Programs and bioinformatic odds and ends

These are Perl programs. Run them without parameters to see usage information.



Calculates the probability a gene set shows average expression response different from a random group of genes sampled from the input dataset.

Comparative Genomic Analysis Tools (CGAT)

As part of my thesis project in Roger Reeves's lab at Johns Hopkins University, I developed a package of genomic DNA analysis tools, CGAT.

CGAT site 2.

You can download the current version, CGAT_0.910.tar.gz.