View gene model output: PDF
GENSCAN 1.0 Date run: 1-Apr-110 Time: 19:24:44
Sequence /tmp/04_01_10-19:24:43.fasta : 120131 bp : 41.26% C+G : Isochore 1 ( 0 - 43 C+G%)
Parameter matrix: HumanIso.smat
Predicted genes/exons:
Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------
1.04 Intr - 2494 2210 285 1 0 68 80 191 0.713 12.91
1.03 Intr - 19001 18966 36 2 0 98 35 68 0.003 0.04
1.02 Intr - 28898 28712 187 1 1 113 16 107 0.130 4.77
1.01 Init - 40346 40303 44 2 2 96 54 47 0.255 2.06
1.00 Prom - 44392 44353 40 -5.65
2.00 Prom + 46869 46908 40 -3.75
2.01 Init + 50426 50485 60 1 0 83 94 6 0.304 2.00
2.02 Intr + 52008 52120 113 2 2 76 65 61 0.205 0.86
2.03 Intr + 55907 56050 144 2 0 86 52 87 0.209 3.38
2.04 Intr + 56110 56192 83 1 2 32 -2 111 0.068 -5.14
2.05 Intr + 58819 58934 116 2 2 101 90 178 0.960 18.55
2.06 Intr + 62702 62801 100 1 1 91 96 72 0.977 7.06
2.07 Intr + 74531 74616 86 0 2 78 100 51 0.242 3.92
2.08 Intr + 77743 77917 175 0 1 68 67 43 0.240 -1.21
2.09 Term + 80700 80839 140 1 2 62 55 140 0.532 5.24
2.10 PlyA + 81550 81555 6 -0.45
3.05 PlyA - 81582 81577 6 1.05
3.04 Term - 82401 81959 443 1 2 44 49 191 0.377 5.23
3.03 Intr - 87884 87785 100 2 1 63 26 114 0.123 1.46
3.02 Intr - 100188 100000 189 0 0 91 34 103 0.010 4.06
3.01 Init - 103297 103265 33 1 0 57 93 21 0.018 -0.58
3.00 Prom - 111432 111393 40 -5.55
4.04 PlyA - 112672 112667 6 1.05
4.03 Term - 115304 114693 612 2 0 81 49 250 0.432 13.89
4.02 Intr - 116597 116585 13 1 1 117 115 3 0.419 -0.23
4.01 Init - 117995 117907 89 2 2 44 109 60 0.484 3.87
Suboptimal exons with probability > 1.000
Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------
NO EXONS FOUND AT GIVEN PROBABILITY CUTOFF
Predicted peptide sequence(s):
>/tmp/04_01_10-19:24:43.fasta|GENSCAN_predicted_peptide_1|184_aa
MAKWQNVGLGVGGPGDRPNPTFSSGASPPQRKAMAKEEIMFNYKRGTRPSYANCPPPLTN
CYMGPSSKKALSKGIHMGAMTHGTGTDLWFPQVENGDEDCEPHVRQPADPVAPPQRLEQC
SAHSERLIKCQHYYCIRHSARQRVQRFPDRVPGSGAAQAGPAFPAWATGRRCQRGPSGGG
GNRQ
>/tmp/04_01_10-19:24:43.fasta|GENSCAN_predicted_peptide_2|338_aa
MEDGGIVSCSGKARWRVFGEVKQTGHPNGNHMLDQFIVKESGLLNLTLPFEDKSPPLLPR
CCRSGNVPWEGPAKNQLLPVELYEPLRSTRQPCWARPWRSALQLTWLWQPVDFIPFRHEQ
NAEGSFAQDWLHPNTLEDNAQKMQEAAEIYYSKLGELNATSPEFCLVFAGQKVKLEDFSI
CFIPVYRDEPNSKILVLVNPQDRKKVLAVFLNHSWWPIEDIMKTSDPAREGLIKVQSFIE
RIVLFILNHVIFGRLERNLNDDMFFLPHSAKEHAKIFWKNGDAAGFYTLKMKGHTEAVQR
DSGLDLACNFHGFQNGSYDVGIFEVLWLHPGVPYVEEV
>/tmp/04_01_10-19:24:43.fasta|GENSCAN_predicted_peptide_3|254_aa
MGCSGEGVLEKDHKQSNKAACCGSSTVGGASSVTPCSNKAKPLGIKSGNRNTHSNELQSD
KMEKFKERDGKEMHHSLSPHLVPEYQIEDEMHLVDFKHDIVDVFLCSDYCVSLLSDLPSS
SLAPLRSILHSAARLIFLQKRSGHVTPLLKQLQWLPIDLRSKQKLLTLGFKALHHLAPSY
LSSLLSFYRPPHTLRSSAAHLLAVPRSRLSRRRPLGHVLPRSRNALPPHLRQTDSLSLFK
TLLKNHLLQEAFPD
>/tmp/04_01_10-19:24:43.fasta|GENSCAN_predicted_peptide_4|237_aa
MEVAYRSLLLNSKPKSPPLTLSLAAATQHRCSGTARNLGVILDSSLSFTPHILSVTKTCR
FHLYNIAKIRPFLSTQMATLLLRPLVISRLDYCVSLLSDLPSSSLAPLQSILHSAAQLIF
LQKRSGHVTPLLKYLQWLPINLRSKQKLLTLGFKALHHLAPSYLSSLLSFYHPPRTLRSS
AAHLLTVPRSHLSCRRPLGHVLLRSWNALPPHLRQTDSLPLFKTLLKSHLLQEAFPD