Best Alignments for NP_510002_1

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1rg9A	6.0961e-57	1rg9A/NP_510002_1-1rg9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.130.1.1 d.130.1.1 d.130.1.1
2p02A	5.0738e-56	2p02A/NP_510002_1-2p02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qm4A	1.5353e-28	1qm4A/NP_510002_1-1qm4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.130.1.1 d.130.1.1 d.130.1.1
3ckdA	3.5513e+01	3ckdA/NP_510002_1-3ckdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qebA	4.8681e+01	2qebA/NP_510002_1-2qebA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qysA	6.0251e+01	1qysA/NP_510002_1-1qysA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.41.1.1
1e6eB	6.1000e+01	1e6eB/NP_510002_1-1e6eB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
1ayfA	6.1622e+01	1ayfA/NP_510002_1-1ayfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
1i7hA	6.1927e+01	1i7hA/NP_510002_1-1i7hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
2j8mA	6.6434e+01	2j8mA/NP_510002_1-2j8mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yvoA	6.6957e+01	1yvoA/NP_510002_1-1yvoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
1qnaA	7.6890e+01	1qnaA/NP_510002_1-1qnaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.1.1 d.129.1.1
1p2hA	8.3077e+01	1p2hA/NP_510002_1-1p2hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fdrA	8.4203e+01	3fdrA/NP_510002_1-3fdrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3dfzA	8.5283e+01	3dfzA/NP_510002_1-3dfzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2zpsA	8.7805e+01	2zpsA/NP_510002_1-2zpsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fvtA	8.8387e+01	3fvtA/NP_510002_1-3fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3gazA	9.0820e+01	3gazA/NP_510002_1-3gazA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e87A	9.1099e+01	2e87A/NP_510002_1-2e87A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z8uA	9.1787e+01	2z8uA/NP_510002_1-2z8uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001