Best Alignments for NP_510002_1

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2p02A	1.1105e-55	2p02A/NP_510002_1-2p02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rg9A	7.7286e-53	1rg9A/NP_510002_1-1rg9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.130.1.1 d.130.1.1 d.130.1.1
1qm4A	4.4279e-50	1qm4A/NP_510002_1-1qm4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.130.1.1 d.130.1.1 d.130.1.1
1kyqA	1.9950e+01	1kyqA/NP_510002_1-1kyqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qysA	2.1254e+01	1qysA/NP_510002_1-1qysA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.41.1.1
3en0A	2.1975e+01	3en0A/NP_510002_1-3en0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3iv3A	2.7047e+01	3iv3A/NP_510002_1-3iv3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c96A	3.3087e+01	3c96A/NP_510002_1-3c96A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2jn6A	4.0021e+01	2jn6A/NP_510002_1-2jn6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r3sA	4.8104e+01	2r3sA/NP_510002_1-2r3sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ryiA	4.9811e+01	1ryiA/NP_510002_1-1ryiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ayfA	5.1621e+01	1ayfA/NP_510002_1-1ayfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
1l6uA	5.2148e+01	1l6uA/NP_510002_1-1l6uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
1e6eB	5.2375e+01	1e6eB/NP_510002_1-1e6eB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
1i7hA	5.2426e+01	1i7hA/NP_510002_1-1i7hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
1c9bB	5.7714e+01	1c9bB/NP_510002_1-1c9bB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.1.1 d.129.1.1
1pczA	5.9432e+01	1pczA/NP_510002_1-1pczA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.1.1 d.129.1.1
1bs2A	5.9713e+01	1bs2A/NP_510002_1-1bs2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3ckdA	6.0378e+01	3ckdA/NP_510002_1-3ckdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3dp7A	6.0381e+01	3dp7A/NP_510002_1-3dp7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001