Best Alignments for NP_510002_1

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1rg9A	5.0685e-60	1rg9A/NP_510002_1-1rg9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.130.1.1 d.130.1.1 d.130.1.1
2p02A	1.4970e-57	2p02A/NP_510002_1-2p02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3ckdA	1.6523e+01	3ckdA/NP_510002_1-3ckdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yvoA	2.2464e+01	1yvoA/NP_510002_1-1yvoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
2qebA	3.2794e+01	2qebA/NP_510002_1-2qebA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1i7hA	3.8578e+01	1i7hA/NP_510002_1-1i7hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
3fdrA	4.0515e+01	3fdrA/NP_510002_1-3fdrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e87A	4.2246e+01	2e87A/NP_510002_1-2e87A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2zpsA	4.2419e+01	2zpsA/NP_510002_1-2zpsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j8mA	4.3234e+01	2j8mA/NP_510002_1-2j8mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1e6eB	4.4572e+01	1e6eB/NP_510002_1-1e6eB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
3fvtA	4.8837e+01	3fvtA/NP_510002_1-3fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vl0A	5.3844e+01	1vl0A/NP_510002_1-1vl0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.2
1qnaA	5.7448e+01	1qnaA/NP_510002_1-1qnaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.1.1 d.129.1.1
1yr0A	5.8330e+01	1yr0A/NP_510002_1-1yr0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
1g8pA	6.1842e+01	1g8pA/NP_510002_1-1g8pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xknA	6.6114e+01	1xknA/NP_510002_1-1xknA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.126.1.6
2z2mA	6.8383e+01	2z2mA/NP_510002_1-2z2mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ge3A	6.9613e+01	2ge3A/NP_510002_1-2ge3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
1bjtA	6.9884e+01	1bjtA/NP_510002_1-1bjtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.11.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001