Best Alignments for NP_510002_1

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1rg9A	1.0482e-54	1rg9A/NP_510002_1-1rg9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.130.1.1 d.130.1.1 d.130.1.1
2p02A	6.6143e-54	2p02A/NP_510002_1-2p02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qm4A	5.4353e-53	1qm4A/NP_510002_1-1qm4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.130.1.1 d.130.1.1 d.130.1.1
1kssA	2.6505e+01	1kssA/NP_510002_1-1kssA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ayfA	2.9754e+01	1ayfA/NP_510002_1-1ayfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.4.1
2bfdA	3.0756e+01	2bfdA/NP_510002_1-2bfdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1p2hA	3.5049e+01	1p2hA/NP_510002_1-1p2hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ujqA	3.6465e+01	1ujqA/NP_510002_1-1ujqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qebA	3.9650e+01	2qebA/NP_510002_1-2qebA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mz9A	4.6512e+01	1mz9A/NP_510002_1-1mz9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ze3A	4.7320e+01	2ze3A/NP_510002_1-2ze3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zoyA	4.8377e+01	1zoyA/NP_510002_1-1zoyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g45A	5.0090e+01	2g45A/NP_510002_1-2g45A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vdfA	5.2426e+01	1vdfA/NP_510002_1-1vdfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1omrA	5.2834e+01	1omrA/NP_510002_1-1omrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3b6zA	5.4578e+01	3b6zA/NP_510002_1-3b6zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gv8A	5.5943e+01	2gv8A/NP_510002_1-2gv8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.3.1.5 c.3.1.5
2as0A	5.6332e+01	2as0A/NP_510002_1-2as0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f48A	5.7695e+01	2f48A/NP_510002_1-2f48A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.89.1.1
3gazA	5.7786e+01	3gazA/NP_510002_1-3gazA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001