Gene list file name: | Hill2000_T1_cluster4-1.txt |
---|---|
Type of gene identifier: | Affymetrix custom chip |
Description: | Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,1) |
Organism: | Caenorhabditis elegans (nematode) |
Gene list type: | Experimental |
Gene name Source Gene ID Annotation Date Added by
AFF_Y48G1A_53.D Aff_Y48G1A_53.D P W
B0238.12 Aff_B0238.12 P W All gene names: B0238.12; 5F745; CE07702; WBGene00015076; WP:CE07702
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 daf-16 Resveratrol
B0273.2 Aff_B0273.2 P W All gene names: puf-7; B0273.2; B0273.2.1; B0273.2.2; 4G253; CE16788; NM_068419; WBGene00004243; WP:CE16788 WormBase description: puf-7 encodes a protein 97% identical to PUF-6 and functions redundantly with the other PUF genes, fbf-1, fbf-2, puf-6, and puf-8, during primordial germ cell development, based on combinatorial RNAi; interacts with NOS-2 in yeast two-hybrid screens.
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
B0414.3 Aff_B0414.3 P W All gene names: hil-5; B0414.3; 1G351; CE07733; NM_059277; WBGene00001856; WP:CE07733 WormBase description: histone H1
Member of lists (Publications lists):
Lund et al 2002 Fig3C Germline-intrinsic, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
B0414.5 Aff_B0414.5 P W All gene names: cpb-3; B0414.5; 1G366; CE07735; NM_059279; WBGene00000772; WP:CE07735 WormBase description: The cbp-3 gene encodes a cytoplasmic polyadenylation element binding (CPEB) protein homolog. WormBase CDS description: RNA binding protein
Member of lists (Publications lists):
Lund et al 2002 Fig3C Germline-intrinsic, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated
C01G8.1 Aff_C01G8.1 P W All gene names: C01G8.1; 1F842; CE07801; WBGene00015312; WP:CE07801
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C03H12.1 Aff_C03H12.1 P W All gene names: C03H12.1; CE35380; WBGene00007284; WP:CE35380; XQ313
C05C10.5 Aff_C05C10.5 P W All gene names: C05C10.5; C05C10.5c.1; C05C10.5c.2; C05C10.5c.3; 2K235; CE01469; CE35822; CE39217; WBGene00007332; WP:CE01469; WP:CE35822; WP:CE39217
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C08C3.4 Aff_C08C3.4 P W All gene names: C08C3.4; 3I884; CE00069; CE39671; WBGene00015591; WP:CE00069; WP:CE39671
C18G1.5 Aff_C18G1.5 P W All gene names: hil-4; C18G1.5; C18G1.5.1; C18G1.5.2; H1.4; 5F233; CE17421; NM_071876; WBGene00001855; WP:CE17421 WormBase description: histone H1
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C25A1.8 Aff_C25A1.8 P W All gene names: C25A1.8; 1K760; CE08374; WBGene00007709; WP:CE08374 WormBase description: lectin
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
C25A1.9 Aff_C25A1.9 P W All gene names: C25A1.9; 1K763; CE18532; WBGene00007710; WP:CE18532
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C29A12.1 Aff_C29A12.1 P W All gene names: C29A12.1; 5L292; CE05326; WBGene00007797; WP:CE05326
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C30F12.4 Aff_C30F12.4 P W All gene names: C30F12.4; 1H548; CE16884; WBGene00016263; WP:CE16884
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C35D10.7 Aff_C35D10.7 P W All gene names: C35D10.7; C35D10.7b.1; C35D10.7b.2; 3F947; CE32160; CE32161; WBGene00016444; WP:CE32160; WP:CE32161
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
C47E12.2 Aff_C47E12.2 P W All gene names: C47E12.2; C47E12.2.1; C47E12.2.2; 4K766; CE05446; WBGene00008147; WP:CE05446 WormBase description: ADP/ATP carrier protein
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Lund et al 2002 Fig3C Germline-intrinsic, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated
C48B4.7 Aff_C48B4.7 P W All gene names: C48B4.7; 3K648; CE00483; WBGene00008170; WP:CE00483
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
C50F7.2 Aff_C50F7.2 P W All gene names: clx-1; col-4; C50F7.2; 4I499; CE39705; NM_068868; WBGene00000551; WP:CE39705 WormBase description: clx-1 encodes a protein that contains 23 copies of a 15 amino acid repeat, possibly derived from a collagen triplet; there is no transcript evidence for this locus.
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
D2005.4 Aff_D2005.4 P W All gene names: D2005.4; 1I393; CE17619; WBGene00008399; WP:CE17619
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
F14H3.6 Aff_F14H3.6 P W All gene names: F14H3.6; 5Q538; CE23652; WBGene00008825; WP:CE23652
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E
F32D1.7 Aff_F32D1.7 P W All gene names: F32D1.7; 5E854; CE09871; WBGene00017986; WP:CE09871
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F32H2.3 Aff_F32H2.3 P W All gene names: spd-2; F32H2.3; F32H2.3.1; F32H2.3.2; 1J544; CE09878; NM_060013; WBGene00004953; WP:CE09878 WormBase description: spd-2 encodes a protein with three predicted coiled-coil domains; SPD-2 activity is essential for centrosome maturation and duplication, and hence for proper mitotic spindle assembly; in regulating the early steps of centrosome maturation, SPD-2 acts together with the coiled-coil protein SPD-5, the Aurora-A kinase AIR-1, and the cytoplasmic dynein DHC-1; in regulating centrosome duplication, SPD-2 likely acts together with the ZYG-1 kinase; in both processes, SPD-2 may function to recruit centrosomal components such as ZYG-9 and microtubule-nucleating gamma-tubulin complexes to the developing centrosome; within centrosomes, SPD-2 localizes to both centrioles and the pericentriolar material; efficient centrosomal localization depends upon AIR-1 and DHC-1, while localization specifically to the pericentriolar material depends upon SPD-5.
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
F33H1.2 Aff_F33H1.2 P W All gene names: gpd-4; F33H1.2; F33H1.2.1; F33H1.2.2; 2K461; CE01568; NM_063791; WBGene00001686; WP:CE01568 WormBase description: gpd-4 encodes one of four C. elegans glyceraldehyde-3-phosphate dehydrogenases (GAPDHs); by homology, GPD-4 is predicted to reversibly catalyze the oxidation and phosphorylation of glyceraldehyde-3-phosphate to 1,3-diphosphoglycerate during glycolysis; GPD-4 is required for embryonic and larval development; in C. elegans, GPD-4 and GPD-1 constitute the minor GAPDH isoenzymes and are expressed primarily in embryos, in all cell types. WormBase CDS description: glyceraldehyde 3-phosphate dehydrogenase 4
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated
F37B1.8 Aff_F37B1.8 P W All gene names: gst-19; F37B1.8; 2N916; CE09995; NM_064463; WBGene00001767; WP:CE09995 WormBase description: glutathione S-transferase
Member of lists (Publications lists):
Bishop et al 2004 T1 Upregulated in vhl-1 vs WT, Custodia et al 2001 T2 Glut-S-transferase, Wang et al 2003 S6 removed genes of contamination
F40F12.5 Aff_F40F12.5 P W All gene names: F40F12.5; 3K988; CE36647; WBGene00009594; WP:CE36647 WormBase description: F40F12.5 is orthologous to the human gene CYLINDROMATOSIS (TURBAN TUMOR SYNDROME) (CYLD; OMIM:605018), which when mutated leads to disease. WormBase CDS description: Ubiquitin carboxyl-terminal hydrolases family 2
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
F43D9.4 Aff_F43D9.4 P W All gene names: sec-1; sip-1; F43D9.4; F43D9.4.1; F43D9.4.2; 3L596; CE00994; NM_066915; SIP/1; WBGene00004798; WP:CE00994 WormBase description: Heat shock hsp20 proteins
Member of lists (Publications lists):
ReichertK et al 2005 T3 xenobiotic downregulated, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, list of genes in cluster E, Romagnolo et al 2002 Fig2a heat shock, ViswanathanM et al 2005 S2 sir-2.1 regulated
F46A9.4 Aff_F46A9.4 P W All gene names: skr-2; F46A9.4; 1K47; CE10578; NM_060111; WBGene00004808; WP:CE10578 WormBase description: skr-2 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-2 is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis; SKR-2::GFP is detected exclusively in the intestine. WormBase CDS description: cyclin A/CDK2-associated protein P19 like
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F48E8.7 Aff_F48E8.7 P W All gene names: skpt-1; F48E8.7; 3G536; CE01959; CE28404; WBGene00018613; WP:CE01959; WP:CE28404 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains leucine-rich repeats.
Member of lists (Publications lists):
Jiang et al 2001 Fig2 cyclin-genes, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F52E1.1 Aff_F52E1.1 P W All gene names: pos-1; F52E1.1; 5I895; CE04629; NM_072771; WBGene00004078; WP:CE04629 WormBase description: pos-1 encodes a CCCH-type zinc-finger protein; during embryogenesis, maternally provided POS-1 is essential for proper fate specification of germ cells, intestine, pharynx, and hypodermis; POS-1's role in cell fate specification is likely as a translational regulator, as POS-1 is required, in posterior blastomeres, for positive regulation of apx-1 mRNA translation and negative regulation of glp-1 mRNA translation via direct binding to the spatial control region (SCR) in the glp-1 mRNA 3' UTR; in regulating mRNA translation, POS-1 interacts with SPN-4, an RNP-type RNA binding protein, that may function to negatively regulate POS-1 activity; pos-1 mRNA is first detected in the gonads of L4 and adult animals, and is present uniformly in oocytes and newly fertilized embryos; during early embryonic divisions, pos-1 mRNA is present at higher levels in germline blastomeres until it disappears following the division of P4; POS-1 protein is first apparent at low levels in 1-cell embryos, with subsequent expression mirroring that of pos-1 mRNA: high levels in germline blastomeres until its disappearance after the P4 division; in the germline blastomeres P1, P2, P3, and P4, POS-1 colocalizes with cytoplasmic and perinuclear P granules. WormBase CDS description: zinc-finger protein
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class2 shorten lifespan, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
F54C9.8 Aff_F54C9.8 P W All gene names: puf-5; F54C9.8; 2I867; CE02258; NM_063413; WBGene00004241; WP:CE02258 WormBase description: Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (6 domains)
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
F55C12.5 Aff_F55C12.5 P W All gene names: F55C12.5; 2G158; CE28453; CE28454; CE31960; WBGene00018872; WP:CE28453; WP:CE28454; WP:CE31960
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 sir-2.1 regulated
F56A3.2 Aff_F56A3.2 P W All gene names: F56A3.2; 1F753; CE11216; WBGene00018909; WP:CE11216
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F56D1.7 Aff_F56D1.5 P W All gene names: daz-1; F56D1.7; 2F747; CE27175; NM_062635; WBGene00000935; WP:CE27175 WormBase description: daz-1 encodes a protein containing an RNA recognition motif that is required for the progression of meiosis during oogenesis; expressed in the germline and expression levels peak in the proximal pachytene region.
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
H11L12.1 Aff_H11L12.1 P W All gene names: H11L12.1; CE20957; WBGene00019189; WP:CE20957; XS322
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
K10H10.4 Aff_K10H10.4 P W All gene names: K10H10.4; 2O787; CE16254; WBGene00010760; WP:CE16254
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Shen et al 2005 T1 hif-1 depend hypoxia, ViswanathanM et al 2005 S2 sir-2.1 regulated
R03C1.1 Aff_R03C1.1 P W All gene names: R03C1.1; 2P194; CE35358; WBGene00010987; WP:CE35358
R09B3.2 Aff_R09B3.2 P W All gene names: R09B3.2; 1M500; CE16307; WBGene00011155; WP:CE16307 WormBase description: RNA recognition motif. (aka RRM, RBD, or RNP domain)
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
R144.10 Aff_R144.6 P W All gene names: R144.10; 3G92; CE26946; WBGene00020098; WP:CE26946
T02C12.3 Aff_T02C12.3 P W All gene names: T02C12.3; 3F113; CE01063; WBGene00011368; WP:CE01063
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
T02G5.11 Aff_T02G5.11 P W All gene names: T02G5.11; 2H370; CE37039; WBGene00020167; WP:CE37039
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
T04D3.1 Aff_T04D3.1 P W All gene names: T04D3.1; 1N894; CE13153; WBGene00011431; WP:CE13153
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
T07C4.3 Aff_T07C4.3 P W All gene names: T07C4.3; 3L443; CE00602; CE21158; WBGene00011560; WP:CE00602; WP:CE21158
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
T10A3.1 Aff_T10A3.1 P W All gene names: rim-1; unc-10; T10A3.1; CE30169; CE31234; NM_171720; WBGene00006750; WP:CE30169; WP:CE31234; XH892 WormBase description: unc-10 encodes a protein with zinc-finger, Q/N-rich, PDZ, and C2 domains that is homologous to vertebrate Rim1, a presynaptic protein which binds, and effects the activity of, synaptic vesicle-associated GTP-Rab3; UNC-10 is required for normal locomotion and synaptic transmission, and localizes to a subdomain of presynaptic termini, where it probably acts to regulate the priming step of presynaptic vesicle fusion by promoting conformational changes in syntaxin.
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
T16G1.8 Aff_T16G1.8 P W All gene names: grl-2; T16G1.8; 5N425; CE20078; NM_073837; WBGene00001711; WP:CE20078
Member of lists (Publications lists):
Lund et al 2002 Fig1 aging-regulated genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
T16G12.5 Aff_T16G12.5 P W All gene names: T16G12.5; 3L157; CE23986; WBGene00011806; WP:CE23986
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
T23B12.6 Aff_T23B12.6 P W All gene names: T23B12.6; 5I938; CE14036; WBGene00020721; WP:CE14036
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
T24D1.2 Aff_T24D1.2 P W All gene names: T24D1.2; T24D1.2.1; T24D1.2.2; 1K530; CE29600; WBGene00011985; WP:CE29600 WormBase description: Zinc finger, C3HC4 type (RING finger) (2 domains)
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
W02A2.7 Aff_W02A2.G P W All gene names: mex-5; W02A2.7; 4O119; CE21237; NM_070165; WBGene00003230; WP:CE21237 WormBase description: mex-5 encodes a novel protein that contains two CCCH zinc finger motifs; maternally provided MEX-5, which functions partly redundantly with the highly similar CCCH finger protein MEX-6, is essential for transducing polarity cues and establishing soma/germline asymmetry in the early embryo; in regulating soma/germline asymmetry, MEX-5 interacts with, and activates, the SOCS-box protein ZIF-1, which functions as part of an E3 ubiquitin ligase complex that degrades germ plasm proteins in somatic blastomeres; accordingly, ectopic expression of MEX-5 throughout the early embryo results in reduced expression of germline proteins in germline blastomeres; MEX-5 is a cytoplasmic protein expressed at uniform levels in oocytes and newly fertilized eggs; from the 1-cell to 4-cell stages of embryogenesis, MEX-5 expression is dynamic, with highest levels seen in the anterior AB blastomere and, for a time, its daughters, the anterior portion of the P1 blastomere, P1 centrosomes (both, then posterior only), and the EMS and C blastomeres; the asymmetric distribution of MEX-5 in early embryos depends upon wild-type activity of the PAR and OMA-1 proteins. WormBase CDS description: Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
W03C9.7 Aff_W03C9.7 P W All gene names: mel-21; mex-1; W03C9.7; W03C9.7.1; W03C9.7.2; 2M261; CE28097; NM_064150; WBGene00003228; WP:CE28097 WormBase description: mex-1 encodes a CCCH-type zinc-finger protein that is required maternally for segregation of P granules, germ cell formation, and somatic cell differentiation in the early embryo; MEX-1 is expressed cytoplasmically in germ line blastomeres, is a component of P granules, and is required for restricting PIE-1 expression and function to these cells; mex-1 mRNA transcripts are also transiently associated with P granules. WormBase CDS description: Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Jones et al 2001 T3 20 most abundant Mixed-stage, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
W03F11.1 Aff_W03F11.1 P W All gene names: W03F11.1; 1C788; CE14542; WBGene00021005; WP:CE14542
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, herm soma enriched genes, Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated
W05B10.1 Aff_W05B10.1 P W All gene names: W05B10.1; 5N140; CE06544; WBGene00012276; WP:CE06544 WormBase description: Core histones H2A, H2B, H3 and H4
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated
W05F2.3 Aff_W05F2.3 P W All gene names: W05F2.3; 1D936; CE14616; WBGene00021035; WP:CE14616
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Jones et al 2001 T3 20 most abundant Mixed-stage, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
W06B4.1 Aff_W06B4.1 P W All gene names: W06B4.1; 2E763; CE02890; WBGene00021056; WP:CE02890
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
W07A8.2 Aff_W07A8.2 P W All gene names: W07A8.2; 5V188; CE18340; CE32002; WBGene00012319; WP:CE18340; WP:CE32002 WormBase description: Ank repeat (4 domains)
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y14H12B.2 Aff_Y14H12B_90.A P W All gene names: Y14H12B.2; 2E222; CE21366; WBGene00021192; WP:CE21366
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class2 shorten lifespan, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y17G7A.1 Aff_Y17G7A.1 P W All gene names: hmg-12; hmg-I-beta; Y17G7A.1; Y17G7A.1.1; Y17G7A.1.2; 2M207; CE21378; NM_064143; WBGene00001977; WP:CE21378
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y19D10A.16 Aff_C01B4.H P W All gene names: Y19D10A.16; WBGene00044734
Y34D9A.4 Aff_Y34D9A_151.B P W All gene names: spd-1; Y34D9A.4; 1B504; CE37061; NM_058408; WBGene00004952; WBGene00021330; WP:CE37061 WormBase description: spd-1 encodes a homolog of human PRC1, tobacco MAP-65, and S. cerevisiae Ase1p that is required for embryonic viability due to its requirement for mitotic spindle stability during the late stages of cytokinesis; SPD-1 is also required for fertility, gonad development, locomotion, and vulval development.
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y39B6A.12 Aff_B0413.F P W All gene names: Y39B6A.12; Y39B6B.T; Y39B6B.U; 5T594; CE29855; CE38444; WBGene00012674; WP:CE29855; WP:CE38444
Y47G6A.2 Aff_Y47G6A_232.A P W All gene names: inx-22; Y47G6A.2; Y47G6A.2.1; Y47G6A.2.2; 1E179; CE39849; NM_058785; WBGene00002144; WP:CE39849
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster E
Y47G6A.25 Aff_Y47G6A_240.C P W All gene names: Y47G6A.25; Y47G6A_240.C; 1E176; CE34403; WBGene00021649; WP:CE34403
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Reinke et al 2004, intrinsic, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E
Y54G9A.5 Aff_Y54G9A.5 P W All gene names: Y54G9A.5; 2O13; CE20321; WBGene00013208; WP:CE20321
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y65B4BL.2 Aff_Y65B4B_13.B P W All gene names: Y65B4BL.2; Y65B4BL.2.1; Y65B4BL.2.2; 1A981; CE25536; WBGene00022034; WP:CE25536
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
ZC410.3 Aff_ZC410.3 P W All gene names: ZC410.3; 4J842; CE03807; WBGene00013881; WP:CE03807 WormBase description: Man(9)-alpha-mannosidase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
ZK1098.8 Aff_ZK1098.8 P W All gene names: mut-7; ZK1098.8; 3K630; CE00370; NM_066704; WBGene00003504; WP:CE00370 WormBase description: mut-7 encodes a homolog of RnaseD that represses transposition of Tc1, Tc3, Tc4, and Tc5, perhaps by degrading transposon-specific messages; also affects sperm development, sensitivity to RNAi of mainly germline expressed genes, silencing of some germline transgenes, X chromosome loss, and is required for cosuppression (functional silencing of chromosomal loci induced by transgenes) and for silencing induced by antisense RNA oligomers; cellular fractionation experiments indicate that MUT-7 is expressed in adult worms, and resides in a complex in both the cytosol and nucleus; in the cytosolic complex, MUT-7 interacts with RDE-2, a novel protein also required for RNA interference. WormBase CDS description: ribonuclease D
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 daf-16 Resveratrol
ZK1127.1 Aff_ZK1127.1 P W All gene names: nos-2; ZK1127.1; 2H357; CE05121; NM_063051; WBGene00003784; WP:CE05121 WormBase description: nos-2 encodes one of three genes in C. elegans that contains a putative zinc-binding domain similar to the one found in Drosophila nanos; nos-2 affects incorporation of primordial germ cells into the somatic gonad, is required redundantly with nos-1 to prevent primordial germ cells from dividing in starved animals and to maintain germ cell viability during larval development in hermaphrodites and in males, and also functions together with nos-1 and nos-3 in the hermaphrodite switch from spermatogenesis to oogenesis; nos-2 is expressed in the primordial germ cells around the time of gastrulation from a maternal RNA associated with P granules, and it is expressed coordinately with nos-1in a dynamic fashion until the embryonic 200-cell stage.
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, list of genes in cluster E, Wang et al 2003 S6 removed genes of contamination
ZK1248.13 Aff_ZK1248.12 P W All gene names: ZK1248.13; 2G120; CE33497; WBGene00022882; WP:CE33497
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
ZK546.15 Aff_ZK546.15 P W All gene names: try-1; ZK546.15; 2F238; CE36075; NM_062509; WBGene00006619; WP:CE36075 WormBase description: Plasminogen
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
ZK858.3 Aff_ZK858.3 P W All gene names: ZK858.3; 1J702; CE15425; WBGene00014117; WP:CE15425 WormBase description: lectin
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated