Gene name Source Gene ID Annotation Date Added by
AFF_Y48G1A_53.D Aff_Y48G1A_53.D P W
B0238.12 Aff_B0238.12 P W All gene names: B0238.12; 5F745; CE07702;
WBGene00015076; WP:CE07702
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 daf-16
Resveratrol
B0273.2 Aff_B0273.2 P W All gene names: puf-7; B0273.2; B0273.2.1; B0273.2.2;
4G253; CE16788; NM_068419; WBGene00004243; WP:CE16788
WormBase description: puf-7 encodes a protein 97%
identical to PUF-6 and functions redundantly with the
other PUF genes, fbf-1, fbf-2, puf-6, and puf-8, during
primordial germ cell development, based on
combinatorial RNAi; interacts with NOS-2 in yeast
two-hybrid screens.
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
B0414.3 Aff_B0414.3 P W All gene names: hil-5; B0414.3; 1G351; CE07733;
NM_059277; WBGene00001856; WP:CE07733
WormBase description: histone H1
Member of lists (Publications lists):
Lund et al 2002 Fig3C
Germline-intrinsic, Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, GO categories,
Reinke et al 2004, list of genes in cluster E,
ViswanathanM et al 2005 S2 sir-2.1 regulated
B0414.5 Aff_B0414.5 P W All gene names: cpb-3; B0414.5; 1G366; CE07735;
NM_059279; WBGene00000772; WP:CE07735
WormBase description: The cbp-3 gene encodes a
cytoplasmic polyadenylation element binding (CPEB)
protein homolog.
WormBase CDS description: RNA binding protein
Member of lists (Publications lists):
Lund et al 2002 Fig3C
Germline-intrinsic, McCarroll et al 2004 SFig1-4
conserved w/ Drosoph, Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 daf-16
Resveratrol, ViswanathanM et al 2005 S2 sir-2.1
regulated
C01G8.1 Aff_C01G8.1 P W All gene names: C01G8.1; 1F842; CE07801;
WBGene00015312; WP:CE07801
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, ViswanathanM et al
2005 S2 sir-2.1 regulated
C03H12.1 Aff_C03H12.1 P W All gene names: C03H12.1; CE35380; WBGene00007284;
WP:CE35380; XQ313
C05C10.5 Aff_C05C10.5 P W All gene names: C05C10.5; C05C10.5c.1; C05C10.5c.2;
C05C10.5c.3; 2K235; CE01469; CE35822; CE39217;
WBGene00007332; WP:CE01469; WP:CE35822; WP:CE39217
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes
P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
herm vs wt male enriched gen, Reinke et al 2004, list
of genes in cluster E, ViswanathanM et al 2005 S2
sir-2.1 regulated
C08C3.4 Aff_C08C3.4 P W All gene names: C08C3.4; 3I884; CE00069; CE39671;
WBGene00015591; WP:CE00069; WP:CE39671
C18G1.5 Aff_C18G1.5 P W All gene names: hil-4; C18G1.5; C18G1.5.1; C18G1.5.2;
H1.4; 5F233; CE17421; NM_071876; WBGene00001855;
WP:CE17421
WormBase description: histone H1
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, GO categories,
Reinke et al 2004, list of genes in cluster E,
ViswanathanM et al 2005 S2 sir-2.1 regulated
C25A1.8 Aff_C25A1.8 P W All gene names: C25A1.8; 1K760; CE08374;
WBGene00007709; WP:CE08374
WormBase description: lectin
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1
regulated, Wang et al 2003 S6 removed genes of
contamination
C25A1.9 Aff_C25A1.9 P W All gene names: C25A1.9; 1K763; CE18532;
WBGene00007710; WP:CE18532
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, GO categories,
Reinke et al 2004, list of genes in cluster E,
ViswanathanM et al 2005 S2 sir-2.1 regulated
C29A12.1 Aff_C29A12.1 P W All gene names: C29A12.1; 5L292; CE05326;
WBGene00007797; WP:CE05326
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared
gemlines, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, intrinsic, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
C30F12.4 Aff_C30F12.4 P W All gene names: C30F12.4; 1H548; CE16884;
WBGene00016263; WP:CE16884
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, ViswanathanM et al
2005 S2 sir-2.1 regulated
C35D10.7 Aff_C35D10.7 P W All gene names: C35D10.7; C35D10.7b.1; C35D10.7b.2;
3F947; CE32160; CE32161; WBGene00016444; WP:CE32160;
WP:CE32161
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt herm vs wt male enriched gen, ViswanathanM
et al 2005 S2 sir-2.1 regulated
C47E12.2 Aff_C47E12.2 P W All gene names: C47E12.2; C47E12.2.1; C47E12.2.2;
4K766; CE05446; WBGene00008147; WP:CE05446
WormBase description: ADP/ATP carrier protein
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes
P<0.05, Lund et al 2002 Fig3C Germline-intrinsic,
Reinke et al 2004, fem1 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
vs glp-4 enriched genes, Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, GO categories,
Reinke et al 2004, list of genes in cluster E,
ViswanathanM et al 2005 S2 daf-16 Resveratrol,
ViswanathanM et al 2005 S2 sir-2.1 regulated
C48B4.7 Aff_C48B4.7 P W All gene names: C48B4.7; 3K648; CE00483;
WBGene00008170; WP:CE00483
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, IVb male soma enriched genes, ViswanathanM et
al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005
S2 daf-16 Resveratrol
C50F7.2 Aff_C50F7.2 P W All gene names: clx-1; col-4; C50F7.2; 4I499; CE39705;
NM_068868; WBGene00000551; WP:CE39705
WormBase description: clx-1 encodes a protein that
contains 23 copies of a 15 amino acid repeat, possibly
derived from a collagen triplet; there is no transcript
evidence for this locus.
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class1
elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1
regulated, ViswanathanM et al 2005 S2 daf-16
Resveratrol
D2005.4 Aff_D2005.4 P W All gene names: D2005.4; 1I393; CE17619;
WBGene00008399; WP:CE17619
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, list of genes in cluster F, Reinke et al
2004, wt vs glp-4 enriched genes, Reinke et al 2004,
list of genes in cluster order, ViswanathanM et al 2005
S2 sir-2.1 regulated, ViswanathanM et al 2005 S2
daf-16 Resveratrol
F14H3.6 Aff_F14H3.6 P W All gene names: F14H3.6; 5Q538; CE23652;
WBGene00008825; WP:CE23652
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
males vs glp4 male enriched , Reinke et al 2004, wt
herm vs wt male enriched gen, Reinke et al 2004, list
of genes in cluster E
F32D1.7 Aff_F32D1.7 P W All gene names: F32D1.7; 5E854; CE09871;
WBGene00017986; WP:CE09871
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes
P<0.05, Reinke et al 2004, intrinsic, Reinke et al
2004, wt vs glp-4 enriched genes, Reinke et al 2004,
list of genes in cluster order, Reinke et al 2004, wt
herm vs wt male enriched gen, Reinke et al 2004, list
of genes in cluster E, ViswanathanM et al 2005 S2
sir-2.1 regulated
F32H2.3 Aff_F32H2.3 P W All gene names: spd-2; F32H2.3; F32H2.3.1; F32H2.3.2;
1J544; CE09878; NM_060013; WBGene00004953; WP:CE09878
WormBase description: spd-2 encodes a protein with
three predicted coiled-coil domains; SPD-2 activity is
essential for centrosome maturation and duplication,
and hence for proper mitotic spindle assembly; in
regulating the early steps of centrosome maturation,
SPD-2 acts together with the coiled-coil protein SPD-5,
the Aurora-A kinase AIR-1, and the cytoplasmic dynein
DHC-1; in regulating centrosome duplication, SPD-2
likely acts together with the ZYG-1 kinase; in both
processes, SPD-2 may function to recruit centrosomal
components such as ZYG-9 and microtubule-nucleating
gamma-tubulin complexes to the developing centrosome;
within centrosomes, SPD-2 localizes to both centrioles
and the pericentriolar material; efficient centrosomal
localization depends upon AIR-1 and DHC-1, while
localization specifically to the pericentriolar
material depends upon SPD-5.
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, list of genes in cluster F, Reinke et al
2004, wt vs glp-4 enriched genes, Reinke et al 2004,
list of genes in cluster order, ViswanathanM et al 2005
S2 sir-2.1 regulated, ViswanathanM et al 2005 S2
daf-16 Resveratrol
F33H1.2 Aff_F33H1.2 P W All gene names: gpd-4; F33H1.2; F33H1.2.1; F33H1.2.2;
2K461; CE01568; NM_063791; WBGene00001686; WP:CE01568
WormBase description: gpd-4 encodes one of four C.
elegans glyceraldehyde-3-phosphate dehydrogenases
(GAPDHs); by homology, GPD-4 is predicted to reversibly
catalyze the oxidation and phosphorylation of
glyceraldehyde-3-phosphate to 1,3-diphosphoglycerate
during glycolysis; GPD-4 is required for embryonic and
larval development; in C. elegans, GPD-4 and GPD-1
constitute the minor GAPDH isoenzymes and are expressed
primarily in embryos, in all cell types.
WormBase CDS description: glyceraldehyde 3-phosphate
dehydrogenase 4
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, Reinke et al 2004,
IVb male soma enriched genes, ViswanathanM et al 2005
S2 sir-2.1 regulated
F37B1.8 Aff_F37B1.8 P W All gene names: gst-19; F37B1.8; 2N916; CE09995;
NM_064463; WBGene00001767; WP:CE09995
WormBase description: glutathione S-transferase
Member of lists (Publications lists):
Bishop et al 2004 T1 Upregulated in
vhl-1 vs WT, Custodia et al 2001 T2
Glut-S-transferase, Wang et al 2003 S6 removed genes
of contamination
F40F12.5 Aff_F40F12.5 P W All gene names: F40F12.5; 3K988; CE36647;
WBGene00009594; WP:CE36647
WormBase description: F40F12.5 is orthologous to the
human gene CYLINDROMATOSIS (TURBAN TUMOR SYNDROME)
(CYLD; OMIM:605018), which when mutated leads to
disease.
WormBase CDS description: Ubiquitin carboxyl-terminal
hydrolases family 2
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1
regulated
F43D9.4 Aff_F43D9.4 P W All gene names: sec-1; sip-1; F43D9.4; F43D9.4.1;
F43D9.4.2; 3L596; CE00994; NM_066915; SIP/1;
WBGene00004798; WP:CE00994
WormBase description: Heat shock hsp20 proteins
Member of lists (Publications lists):
ReichertK et al 2005 T3 xenobiotic
downregulated, Reinke et al 2004, Fig2b shared
gemlines, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, intrinsic, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, list of
genes in cluster E, Romagnolo et al 2002 Fig2a heat
shock, ViswanathanM et al 2005 S2 sir-2.1 regulated
F46A9.4 Aff_F46A9.4 P W All gene names: skr-2; F46A9.4; 1K47; CE10578;
NM_060111; WBGene00004808; WP:CE10578
WormBase description: skr-2 encodes a homolog of Skp1
in S. cerevisiae, a core component of the SCF (Skp1p,
Cullin, F-box) ubiquitin-ligase complex that
facilitates ubiquitin-mediated protein degradation;
SKR-2 is required for the restraint of cell
proliferation, progression through the pachytene stage
of meiosis, and the formation of bivalent chromosomes
at diakinesis; SKR-2::GFP is detected exclusively in
the intestine.
WormBase CDS description: cyclin A/CDK2-associated
protein P19 like
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, Fig2b shared gemlines, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, list of
genes in cluster order, Reinke et al 2004, wt males vs
glp4 male enriched , Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
F48E8.7 Aff_F48E8.7 P W All gene names: skpt-1; F48E8.7; 3G536; CE01959;
CE28404; WBGene00018613; WP:CE01959; WP:CE28404
WormBase description: This gene encodes a protein
containing an F-box, a motif predicted to mediate
protein-protein interactions either with homologs of
yeast Skp-1p or with other proteins; this gene's
encoded protein also contains leucine-rich repeats.
Member of lists (Publications lists):
Jiang et al 2001 Fig2 cyclin-genes,
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph,
Reinke et al 2004, fem1 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
vs glp-4 enriched genes, Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
F52E1.1 Aff_F52E1.1 P W All gene names: pos-1; F52E1.1; 5I895; CE04629;
NM_072771; WBGene00004078; WP:CE04629
WormBase description: pos-1 encodes a CCCH-type
zinc-finger protein; during embryogenesis, maternally
provided POS-1 is essential for proper fate
specification of germ cells, intestine, pharynx, and
hypodermis; POS-1's role in cell fate specification is
likely as a translational regulator, as POS-1 is
required, in posterior blastomeres, for positive
regulation of apx-1 mRNA translation and negative
regulation of glp-1 mRNA translation via direct binding
to the spatial control region (SCR) in the glp-1 mRNA
3' UTR; in regulating mRNA translation, POS-1 interacts
with SPN-4, an RNP-type RNA binding protein, that may
function to negatively regulate POS-1 activity; pos-1
mRNA is first detected in the gonads of L4 and adult
animals, and is present uniformly in oocytes and newly
fertilized embryos; during early embryonic divisions,
pos-1 mRNA is present at higher levels in germline
blastomeres until it disappears following the division
of P4; POS-1 protein is first apparent at low levels in
1-cell embryos, with subsequent expression mirroring
that of pos-1 mRNA: high levels in germline blastomeres
until its disappearance after the P4 division; in the
germline blastomeres P1, P2, P3, and P4, POS-1
colocalizes with cytoplasmic and perinuclear P
granules.
WormBase CDS description: zinc-finger protein
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class2 shorten
lifespan, Reinke et al 2004, fem1 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,
wt herm vs wt male enriched gen, Reinke et al 2004,
list of genes in cluster E, ViswanathanM et al 2005 S2
sir-2.1 regulated, Wang et al 2003 S6 removed genes of
contamination
F54C9.8 Aff_F54C9.8 P W All gene names: puf-5; F54C9.8; 2I867; CE02258;
NM_063413; WBGene00004241; WP:CE02258
WormBase description: Pumilio-family RNA binding
domains (aka PUM-HD, Pumilio homology domain) (6
domains)
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared
gemlines, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, intrinsic, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated, Wang et al 2003 S6 removed genes of
contamination
F55C12.5 Aff_F55C12.5 P W All gene names: F55C12.5; 2G158; CE28453; CE28454;
CE31960; WBGene00018872; WP:CE28453; WP:CE28454;
WP:CE31960
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved
w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/
Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke
et al 2004, mixed oogenesis soma, ViswanathanM et al
2005 S2 sir-2.1 regulated
F56A3.2 Aff_F56A3.2 P W All gene names: F56A3.2; 1F753; CE11216;
WBGene00018909; WP:CE11216
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved
w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/
Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt herm
vs wt male enriched gen, Reinke et al 2004, GO
categories, Reinke et al 2004, list of genes in cluster
E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F56D1.7 Aff_F56D1.5 P W All gene names: daz-1; F56D1.7; 2F747; CE27175;
NM_062635; WBGene00000935; WP:CE27175
WormBase description: daz-1 encodes a protein
containing an RNA recognition motif that is required
for the progression of meiosis during oogenesis;
expressed in the germline and expression levels peak in
the proximal pachytene region.
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4
conserved w/ Drosoph, Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, ViswanathanM et al
2005 S2 sir-2.1 regulated
H11L12.1 Aff_H11L12.1 P W All gene names: H11L12.1; CE20957; WBGene00019189;
WP:CE20957; XS322
Member of lists (Publications lists):
Reinke et al 2004, list of genes in
cluster F, Reinke et al 2004, fem1 enriched genes,
Reinke et al 2004, Fig2b shared gemlines, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
vs glp-4 enriched genes, Reinke et al 2004, wt males vs
glp4 male enriched , Reinke et al 2004, wt herm vs wt
male enriched gen, ViswanathanM et al 2005 S2 sir-2.1
regulated
K10H10.4 Aff_K10H10.4 P W All gene names: K10H10.4; 2O787; CE16254;
WBGene00010760; WP:CE16254
Member of lists (Publications lists):
Reinke et al 2004, list of genes in
cluster order, Reinke et al 2004, list of genes in
cluster B, Shen et al 2005 T1 hif-1 depend hypoxia,
ViswanathanM et al 2005 S2 sir-2.1 regulated
R03C1.1 Aff_R03C1.1 P W All gene names: R03C1.1; 2P194; CE35358;
WBGene00010987; WP:CE35358
R09B3.2 Aff_R09B3.2 P W All gene names: R09B3.2; 1M500; CE16307;
WBGene00011155; WP:CE16307
WormBase description: RNA recognition motif. (aka RRM,
RBD, or RNP domain)
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, Fig2b shared gemlines, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, list of
genes in cluster order, Reinke et al 2004, wt males vs
glp4 male enriched , Reinke et al 2004, GO categories,
Reinke et al 2004, list of genes in cluster E,
ViswanathanM et al 2005 S2 sir-2.1 regulated
R144.10 Aff_R144.6 P W All gene names: R144.10; 3G92; CE26946; WBGene00020098;
WP:CE26946
T02C12.3 Aff_T02C12.3 P W All gene names: T02C12.3; 3F113; CE01063;
WBGene00011368; WP:CE01063
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4
conserved w/ Drosoph, Reinke et al 2004, list of genes
in cluster F, Reinke et al 2004, fem1 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,
wt herm vs wt male enriched gen, ViswanathanM et al
2005 S2 sir-2.1 regulated
T02G5.11 Aff_T02G5.11 P W All gene names: T02G5.11; 2H370; CE37039;
WBGene00020167; WP:CE37039
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, ViswanathanM et al
2005 S2 sir-2.1 regulated
T04D3.1 Aff_T04D3.1 P W All gene names: T04D3.1; 1N894; CE13153;
WBGene00011431; WP:CE13153
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, ViswanathanM et al
2005 S2 sir-2.1 regulated
T07C4.3 Aff_T07C4.3 P W All gene names: T07C4.3; 3L443; CE00602; CE21158;
WBGene00011560; WP:CE00602; WP:CE21158
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
males vs glp4 male enriched , Reinke et al 2004, wt
herm vs wt male enriched gen, ViswanathanM et al 2005
S2 sir-2.1 regulated
T10A3.1 Aff_T10A3.1 P W All gene names: rim-1; unc-10; T10A3.1; CE30169;
CE31234; NM_171720; WBGene00006750; WP:CE30169;
WP:CE31234; XH892
WormBase description: unc-10 encodes a protein with
zinc-finger, Q/N-rich, PDZ, and C2 domains that is
homologous to vertebrate Rim1, a presynaptic protein
which binds, and effects the activity of, synaptic
vesicle-associated GTP-Rab3; UNC-10 is required for
normal locomotion and synaptic transmission, and
localizes to a subdomain of presynaptic termini, where
it probably acts to regulate the priming step of
presynaptic vesicle fusion by promoting conformational
changes in syntaxin.
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4
conserved w/ Drosoph, ViswanathanM et al 2005 S2
sir-2.1 regulated
T16G1.8 Aff_T16G1.8 P W All gene names: grl-2; T16G1.8; 5N425; CE20078;
NM_073837; WBGene00001711; WP:CE20078
Member of lists (Publications lists):
Lund et al 2002 Fig1 aging-regulated
genes, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, list of genes in cluster B,
Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al
2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes
common to feeding ANOVA, Wang et al 2003 S3 genes
pass one-way ANOVA
T16G12.5 Aff_T16G12.5 P W All gene names: T16G12.5; 3L157; CE23986;
WBGene00011806; WP:CE23986
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, list of genes in cluster F, Reinke et al
2004, wt vs glp-4 enriched genes, Reinke et al 2004,
list of genes in cluster order, ViswanathanM et al 2005
S2 sir-2.1 regulated, ViswanathanM et al 2005 S2
daf-16 Resveratrol
T23B12.6 Aff_T23B12.6 P W All gene names: T23B12.6; 5I938; CE14036;
WBGene00020721; WP:CE14036
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4
conserved w/ Drosoph, Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, mixed oogenesis soma, Reinke
et al 2004, wt herm vs wt male enriched gen, Reinke et
al 2004, GO categories, Reinke et al 2004, list of
genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
T24D1.2 Aff_T24D1.2 P W All gene names: T24D1.2; T24D1.2.1; T24D1.2.2; 1K530;
CE29600; WBGene00011985; WP:CE29600
WormBase description: Zinc finger, C3HC4 type (RING
finger) (2 domains)
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, ViswanathanM et al
2005 S2 sir-2.1 regulated
W02A2.7 Aff_W02A2.G P W All gene names: mex-5; W02A2.7; 4O119; CE21237;
NM_070165; WBGene00003230; WP:CE21237
WormBase description: mex-5 encodes a novel protein
that contains two CCCH zinc finger motifs; maternally
provided MEX-5, which functions partly redundantly with
the highly similar CCCH finger protein MEX-6, is
essential for transducing polarity cues and
establishing soma/germline asymmetry in the early
embryo; in regulating soma/germline asymmetry, MEX-5
interacts with, and activates, the SOCS-box protein
ZIF-1, which functions as part of an E3 ubiquitin
ligase complex that degrades germ plasm proteins in
somatic blastomeres; accordingly, ectopic expression of
MEX-5 throughout the early embryo results in reduced
expression of germline proteins in germline
blastomeres; MEX-5 is a cytoplasmic protein expressed
at uniform levels in oocytes and newly fertilized eggs;
from the 1-cell to 4-cell stages of embryogenesis,
MEX-5 expression is dynamic, with highest levels seen
in the anterior AB blastomere and, for a time, its
daughters, the anterior portion of the P1 blastomere,
P1 centrosomes (both, then posterior only), and the EMS
and C blastomeres; the asymmetric distribution of MEX-5
in early embryos depends upon wild-type activity of the
PAR and OMA-1 proteins.
WormBase CDS description: Zinc finger C-x8-C-x5-C-x3-H
type (and similar).
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
W03C9.7 Aff_W03C9.7 P W All gene names: mel-21; mex-1; W03C9.7; W03C9.7.1;
W03C9.7.2; 2M261; CE28097; NM_064150; WBGene00003228;
WP:CE28097
WormBase description: mex-1 encodes a CCCH-type
zinc-finger protein that is required maternally for
segregation of P granules, germ cell formation, and
somatic cell differentiation in the early embryo; MEX-1
is expressed cytoplasmically in germ line blastomeres,
is a component of P granules, and is required for
restricting PIE-1 expression and function to these
cells; mex-1 mRNA transcripts are also transiently
associated with P granules.
WormBase CDS description: Zinc finger C-x8-C-x5-C-x3-H
type (and similar). (2 domains)
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes
P<0.05, Jones et al 2001 T3 20 most abundant
Mixed-stage, Reinke et al 2004, Fig2b shared gemlines,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs
glp-4 enriched genes, Reinke et al 2004, wt males vs
glp4 male enriched , Reinke et al 2004, wt herm vs wt
male enriched gen, Reinke et al 2004, list of genes in
cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
W03F11.1 Aff_W03F11.1 P W All gene names: W03F11.1; 1C788; CE14542;
WBGene00021005; WP:CE14542
Member of lists (Publications lists):
Reinke et al 2004, list of genes in
cluster A, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, herm soma enriched genes,
Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al
2005 S2 sir-2.1 regulated
W05B10.1 Aff_W05B10.1 P W All gene names: W05B10.1; 5N140; CE06544;
WBGene00012276; WP:CE06544
WormBase description: Core histones H2A, H2B, H3 and H4
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, GO categories, ViswanathanM et al 2005 S2
sir-2.1 regulated
W05F2.3 Aff_W05F2.3 P W All gene names: W05F2.3; 1D936; CE14616;
WBGene00021035; WP:CE14616
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes
P<0.05, Jones et al 2001 T3 20 most abundant
Mixed-stage, Reinke et al 2004, fem1 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,
wt herm vs wt male enriched gen, Reinke et al 2004,
list of genes in cluster E, ViswanathanM et al 2005 S2
sir-2.1 regulated, Wang et al 2003 S6 removed genes of
contamination
W06B4.1 Aff_W06B4.1 P W All gene names: W06B4.1; 2E763; CE02890;
WBGene00021056; WP:CE02890
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes
P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
herm vs wt male enriched gen, Reinke et al 2004, list
of genes in cluster E, ViswanathanM et al 2005 S2
sir-2.1 regulated
W07A8.2 Aff_W07A8.2 P W All gene names: W07A8.2; 5V188; CE18340; CE32002;
WBGene00012319; WP:CE18340; WP:CE32002
WormBase description: Ank repeat (4 domains)
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, list of genes in cluster F, Reinke et al
2004, wt vs glp-4 enriched genes, Reinke et al 2004,
list of genes in cluster order, Reinke et al 2004, GO
categories, ViswanathanM et al 2005 S2 sir-2.1
regulated
Y14H12B.2 Aff_Y14H12B_90.A P W All gene names: Y14H12B.2; 2E222; CE21366;
WBGene00021192; WP:CE21366
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class2 shorten
lifespan, Reinke et al 2004, list of genes in cluster
F, Reinke et al 2004, Fig2b shared gemlines, Reinke et
al 2004, list of genes in cluster order, Reinke et al
2004, intrinsic, Reinke et al 2004, wt vs glp-4
enriched genes, Reinke et al 2004, wt males vs glp4
male enriched , Reinke et al 2004, wt herm vs wt male
enriched gen, ViswanathanM et al 2005 S2 sir-2.1
regulated
Y17G7A.1 Aff_Y17G7A.1 P W All gene names: hmg-12; hmg-I-beta; Y17G7A.1;
Y17G7A.1.1; Y17G7A.1.2; 2M207; CE21378; NM_064143;
WBGene00001977; WP:CE21378
Member of lists (Publications lists):
Reinke et al 2004, list of genes in
cluster F, Reinke et al 2004, fem1 enriched genes,
Reinke et al 2004, Fig2b shared gemlines, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, oogenesis enriched genes, Reinke et al 2004, wt
vs glp-4 enriched genes, Reinke et al 2004, wt males vs
glp4 male enriched , Reinke et al 2004, wt herm vs wt
male enriched gen, ViswanathanM et al 2005 S2 sir-2.1
regulated
Y19D10A.16 Aff_C01B4.H P W All gene names: Y19D10A.16; WBGene00044734
Y34D9A.4 Aff_Y34D9A_151.B P W All gene names: spd-1; Y34D9A.4; 1B504; CE37061;
NM_058408; WBGene00004952; WBGene00021330; WP:CE37061
WormBase description: spd-1 encodes a homolog of human
PRC1, tobacco MAP-65, and S. cerevisiae Ase1p that is
required for embryonic viability due to its requirement
for mitotic spindle stability during the late stages of
cytokinesis; SPD-1 is also required for fertility,
gonad development, locomotion, and vulval development.
Member of lists (Publications lists):
Reinke et al 2004, list of genes in
cluster F, Reinke et al 2004, Fig2b shared gemlines,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs
glp-4 enriched genes, Reinke et al 2004, wt males vs
glp4 male enriched , Reinke et al 2004, wt herm vs wt
male enriched gen, ViswanathanM et al 2005 S2 sir-2.1
regulated
Y39B6A.12 Aff_B0413.F P W All gene names: Y39B6A.12; Y39B6B.T; Y39B6B.U; 5T594;
CE29855; CE38444; WBGene00012674; WP:CE29855;
WP:CE38444
Y47G6A.2 Aff_Y47G6A_232.A P W All gene names: inx-22; Y47G6A.2; Y47G6A.2.1;
Y47G6A.2.2; 1E179; CE39849; NM_058785; WBGene00002144;
WP:CE39849
Member of lists (Publications lists):
Reinke et al 2004, list of genes in
cluster order, Reinke et al 2004, list of genes in
cluster E
Y47G6A.25 Aff_Y47G6A_240.C P W All gene names: Y47G6A.25; Y47G6A_240.C; 1E176;
CE34403; WBGene00021649; WP:CE34403
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes
P<0.05, Reinke et al 2004, intrinsic, Reinke et al
2004, Fig2b shared gemlines, Reinke et al 2004, wt vs
glp-4 enriched genes, Reinke et al 2004, list of genes
in cluster order, Reinke et al 2004, wt males vs glp4
male enriched , Reinke et al 2004, wt herm vs wt male
enriched gen, Reinke et al 2004, list of genes in
cluster E
Y54G9A.5 Aff_Y54G9A.5 P W All gene names: Y54G9A.5; 2O13; CE20321;
WBGene00013208; WP:CE20321
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, wt vs glp-4 enriched genes, ViswanathanM et
al 2005 S2 sir-2.1 regulated
Y65B4BL.2 Aff_Y65B4B_13.B P W All gene names: Y65B4BL.2; Y65B4BL.2.1; Y65B4BL.2.2;
1A981; CE25536; WBGene00022034; WP:CE25536
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, Fig2b shared gemlines, Reinke
et al 2004, list of genes in cluster order, Reinke et
al 2004, oogenesis enriched genes, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, list of
genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
ZC410.3 Aff_ZC410.3 P W All gene names: ZC410.3; 4J842; CE03807;
WBGene00013881; WP:CE03807
WormBase description: Man(9)-alpha-mannosidase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved
w/ yeast, ViswanathanM et al 2005 S2 sir-2.1
regulated, ViswanathanM et al 2005 S2 daf-16
Resveratrol
ZK1098.8 Aff_ZK1098.8 P W All gene names: mut-7; ZK1098.8; 3K630; CE00370;
NM_066704; WBGene00003504; WP:CE00370
WormBase description: mut-7 encodes a homolog of RnaseD
that represses transposition of Tc1, Tc3, Tc4, and Tc5,
perhaps by degrading transposon-specific messages; also
affects sperm development, sensitivity to RNAi of
mainly germline expressed genes, silencing of some
germline transgenes, X chromosome loss, and is required
for cosuppression (functional silencing of chromosomal
loci induced by transgenes) and for silencing induced
by antisense RNA oligomers; cellular fractionation
experiments indicate that MUT-7 is expressed in adult
worms, and resides in a complex in both the cytosol and
nucleus; in the cytosolic complex, MUT-7 interacts with
RDE-2, a novel protein also required for RNA
interference.
WormBase CDS description: ribonuclease D
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 daf-16
Resveratrol
ZK1127.1 Aff_ZK1127.1 P W All gene names: nos-2; ZK1127.1; 2H357; CE05121;
NM_063051; WBGene00003784; WP:CE05121
WormBase description: nos-2 encodes one of three genes
in C. elegans that contains a putative zinc-binding
domain similar to the one found in Drosophila nanos;
nos-2 affects incorporation of primordial germ cells
into the somatic gonad, is required redundantly with
nos-1 to prevent primordial germ cells from dividing in
starved animals and to maintain germ cell viability
during larval development in hermaphrodites and in
males, and also functions together with nos-1 and nos-3
in the hermaphrodite switch from spermatogenesis to
oogenesis; nos-2 is expressed in the primordial germ
cells around the time of gastrulation from a maternal
RNA associated with P granules, and it is expressed
coordinately with nos-1in a dynamic fashion until the
embryonic 200-cell stage.
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, wt vs glp-4 enriched genes,
Reinke et al 2004, list of genes in cluster order,
Reinke et al 2004, oogenesis enriched genes, Reinke et
al 2004, list of genes in cluster E, Wang et al 2003
S6 removed genes of contamination
ZK1248.13 Aff_ZK1248.12 P W All gene names: ZK1248.13; 2G120; CE33497;
WBGene00022882; WP:CE33497
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke
et al 2004, wt vs glp-4 enriched genes, Reinke et al
2004, list of genes in cluster order, Reinke et al
2004, wt herm vs wt male enriched gen, Reinke et al
2004, list of genes in cluster E, ViswanathanM et al
2005 S2 sir-2.1 regulated
ZK546.15 Aff_ZK546.15 P W All gene names: try-1; ZK546.15; 2F238; CE36075;
NM_062509; WBGene00006619; WP:CE36075
WormBase description: Plasminogen
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4
conserved w/ Drosoph, Reinke et al 2004, fem1 enriched
genes, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, oogenesis enriched genes,
Reinke et al 2004, wt vs glp-4 enriched genes, Reinke
et al 2004, GO categories, Reinke et al 2004, list of
genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1
regulated
ZK858.3 Aff_ZK858.3 P W All gene names: ZK858.3; 1J702; CE15425;
WBGene00014117; WP:CE15425
WormBase description: lectin
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared
gemlines, Reinke et al 2004, list of genes in cluster
order, Reinke et al 2004, intrinsic, Reinke et al 2004,
wt vs glp-4 enriched genes, Reinke et al 2004, wt males
vs glp4 male enriched , Reinke et al 2004, wt herm vs
wt male enriched gen, Reinke et al 2004, list of genes
in cluster E, ViswanathanM et al 2005 S2 daf-16
Resveratrol, ViswanathanM et al 2005 S2 sir-2.1
regulated
