Dybbs et al 2005, unc-43 vs wt differ genes, 38 genes

Gene list file name:Dybbs2005_Fig3_unc-43_vs_wt_differ_genes.txt
Type of gene identifier:Affymetrix probe set
Description:Dybbs2005 et al 2005, Fig3, reduced expression in
unc-43(n1186) compared with wt (fold-change <-0.5, p<0.01)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C24G7.2 183713_at P W All gene names: C24G7.2; 1E677; CE37320; WBGene00016064; WP:CE37320
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C29F7.2 178316_at P W All gene names: C29F7.2; CE35414; WBGene00007811; WP:CE35414; XO35
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, fem3 enriched genes                                                       

C35D10.14 190499_s_at P W All gene names: clec-5; C35D10.14; 3F972; CE27828; WBGene00016450; WP:CE27828 WormBase description: 7TM chemoreceptor, clec family
C44B7.8 189898_s_at P W All gene names: pmp-1; C44B7.8; 2H172; CE02546; NM_063006; WBGene00004058; WP:CE02546 WormBase description: ATP-binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C54F6.3 183689_at P W All gene names: C54F6.3; 5I11; CE08975; WBGene00016921; WP:CE08975
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

F01D5.3 178128_at P W All gene names: F01D5.3; 2O290; CE18561; WBGene00008494; WP:CE18561
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F08G5.6 178843_at P W All gene names: F08G5.6; 4N201; CE05576; WBGene00008584; WP:CE05576
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F09B9.2 175840_s_at P W All gene names: unc-115; F09B9.2; CE02176; CE15759; NM_077301; WBGene00006839; WP:CE02176; WP:CE15759; XK771 WormBase description: unc-115 encodes a protein that binds actin filaments and that is required for RAS signalling and UNC-40/netrin activity during axon pathfinding. WormBase CDS description: LIM domains
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F15B9.1 193272_s_at P W All gene names: far-3; F15B9.1; 5N476; CE09406; NM_073850; WBGene00001387; WP:CE09406 WormBase description: O.volvulus antigen peptide like
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F23F12.12 171769_x_at P W All gene names: F23F12.12; 3H599; CE29282; WBGene00017756; WP:CE29282
F25D1.5 188921_at P W All gene names: F25D1.5; 5L26; CE05726; WBGene00009110; WP:CE05726 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response                                                                   

F31F6.4 175166_at, 187903_at P W All gene names: flp-8; F31F6.4; CE05776; CE29960; NM_171805; WBGene00001451; WP:CE05776; WP:CE29960; XP501 WormBase description: flp-8 encodes three copies of a FMRFamide-related short peptide neurotransmitter; although the FLP-8 peptide can increase pharyngeal action potential frequency, loss of FLP-8 function does not result in a mutant phenotype, suggesting that FLP-8 may function redundantly with other FMRFamide-like peptides in the nervous system; FLP-8 expression is detected in embryos and larval stages, but not in adults; FLP-8 is expressed in the sensory neurons ASEL/R, URXL/R, and PVM.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes                                                                              

F35E12.5 179695_at P W All gene names: F35E12.5; 5O218; CE38510; WBGene00009429; WP:CE38510
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

F38A6.3 183824_s_at P W All gene names: hif-1; F38A6.3; F38A6.3e.1; F38A6.3e.2; 5V253; CE18671; CE18672; CE32019; CE38181; CE38182; NM_075607; WBGene00001851; WP:CE18671; WP:CE18672; WP:CE32019; WP:CE38181; WP:CE38182 WormBase description: hif-1 encodes an ortholog of the mammalian hypoxia-induced factor HIF-1, and is required for survival in hypoxic environments (1% oxygen) that have no effect on wild-type C. elegans.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF                                                                                 

F42A10.7 186443_at P W All gene names: F42A10.7; F42A10.7.1; F42A10.7.2; 3H268; CE01298; WBGene00018343; WP:CE01298
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, N2 vs daf-2 age                                  
                                              different gene, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F54F3.3 187964_at P W All gene names: F54F3.3; 5N401; CE18732; WBGene00010062; WP:CE18732 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

H23N18.3 188962_at P W All gene names: ugt-8; H23N18.3; 5F381; CE20985; WBGene00019234; WP:CE20985 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              list of genes in cluster C, Reinke et al 2004, GO                                  
                                              categories, Shen et al 2005  T1 hif-1indepen hypoxia,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K07A1.10 182046_at P W All gene names: K07A1.10; 1K190; CE39387; WBGene00010616; WP:CE39387
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

K07E3.8 188031_s_at P W All gene names: vem-1; K07E3.8; CE21027; CE34578; WBGene00006890; WP:CE21027; WP:CE34578; XI706
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, ReichertK et al 2005 T1 xenobiotic induced                               
                                              P450, ViswanathanM et al 2005  S2 sir-2.1 regulated                                

K09C4.5 189646_at P W All gene names: K09C4.5; CE37126; WBGene00019550; WP:CE37126; XD905 WormBase description: sugar transporter
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

K11E8.1 172058_x_at, 175820_s_at, 175821_s_at, 175824_s_at, 187759_s_at, 193459_s_at, 193463_s_at P W All gene names: dec-8; unc-43; K11E8.1; K11E8.1a.1; K11E8.1a.2; K11E8.1b.1; K11E8.1b.2; K11E8.1b.3; K11E8.1c.1; K11E8.1c.2; K11E8.1d.1; K11E8.1d.2; K11E8.1e.1; K11E8.1e.2; K11E8.1f.1; K11E8.1f.2; K11E8.1g.1; K11E8.1g.2; K11E8.1h.1; K11E8.1h.2; K11E8.1i.1; K11E8.1i.2; K11E8.1k.1; K11E8.1k.2; K11E8.1l.1; K11E8.1l.2; 4L90; CE28051; CE28052; CE28053; CE28054; CE28055; CE28056; CE28057; CE28058; CE28059; CE28060; CE28061; CE35590; WBGene00006779; WP:CE28051; WP:CE28052; WP:CE28053; WP:CE28054; WP:CE28055; WP:CE28056; WP:CE28057; WP:CE28058; WP:CE28059; WP:CE28060; WP:CE28061; WP:CE35590 WormBase description: unc-43(gf) mutants (in which unc-43 is overexpressed) suppress the excess motoneuron branching, and thus the uncoordinated phenotype, induced by an unc-6deltaC transgene. WormBase CDS description: Ca2+/calmodulin-dependent protein kinase
T04C12.3 183970_at P W All gene names: T04C12.3; T04C12.3.1; T04C12.3.2; 5L544; CE13146; WBGene00011428; WP:CE13146
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, IVb male soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T05D4.1 192888_s_at P W All gene names: T05D4.1; T05D4.1.1; T05D4.1.2; 3O652; CE16341; WBGene00011474; WP:CE16341 WormBase description: T05D4.1 is orthologous to the human gene ALDOLASE A, FRUCTOSE-BISPHOSPHATE (ALDOA; OMIM:103850), which when mutated leads to aldolase A deficiency. WormBase CDS description: Fructose-bisphosphate aldolase class-I
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Reinke et al 2004, GO categories, Reinke                             
                                              et al 2004, IVb male soma enriched genes, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

T09H2.1 189343_at P W All gene names: cyp-34A4; T09H2.1; 5E427; CE18231; NM_071696; WBGene00020386; WP:CE18231 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, ViswanathanM et al 2005  S2 sir-2.1 regulated,                               
                                              Wang et al 2003  S6 removed genes of contamination                                 

T21C12.2 193009_at P W All gene names: hpd-1; T21C12.2; 3L625; CE02347; NM_066923; WBGene00001993; WP:CE02347 WormBase description: hpd-1 encodes a 4-hydroxyphenylpyruvate dioxygenase that is required for normally short lifespan and negative regulation of the dauer larval stage, with loss of hpd-1 function prolonging lifespan and promoting dauer formation; hpd-1 is a (perhaps evolutionarily conserved) target of transcriptional activation by DAF-16; HPD-1 is orthologous to human HPD (OMIM:276710, mutated in tyrosinemia type III). WormBase CDS description: 4-hydroxyphenylpyruvate dioxygenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

W03G1.7 192194_s_at P W All gene names: asm-3; W03G1.7; 4B274; CE31626; CE39794; NM_067539; WBGene00000213; WP:CE31626; WP:CE39794 WormBase description: sphingomyelin phosphodiesterase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

W05G11.6 192581_s_at P W All gene names: W05G11.6; W05G11.6a.1; W05G11.6a.2; W05G11.6b.1; W05G11.6b.2; W05G11.6b.3; W05G11.6d.1; W05G11.6d.2; W05G11.6d.3; 3A682; CE14634; CE19610; CE32740; CE32741; WBGene00021043; WP:CE14634; WP:CE19610; WP:CE32740; WP:CE32741 WormBase description: phosphoenolpyruvate carboxykinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y19D10A.4 180813_s_at P W All gene names: Y19D10A.4; 5C871; WBGene00021219
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y37D8A.23 194006_at P W All gene names: unc-25; Y37D8A.23; 3O37; CE20226; CE31832; CE32012; NM_067288; WBGene00006762; WP:CE20226; WP:CE31832; WP:CE32012 WormBase description: Pyridoxal-dependent decarboxylase conserved domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

Y42G9A.3 184843_at P W All gene names: Y42G9A.3; Y42G9A.D; 3H237; CE21870; CE33945; WBGene00021533; WP:CE21870; WP:CE33945
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

Y45G12C.2 187085_s_at P W All gene names: gst-10; Y45G12C.2; Y45G12C.M; 5D41; CE21937; NM_071300; WBGene00001758; WP:CE21937 WormBase description: gst-10 encodes a predicted glutathione S-transferase with similarity to human glutathione S-transferase P. WormBase CDS description: glutathione S-transferase
Y45G12C.3 186819_s_at P W All gene names: Y45G12C.3; Y45G12C.E; 5D31; WBGene00021566
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2                                           
                                              Glut-S-transferase, Reinke et al 2004, list of genes in                            
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Wang et al 2003  S3  genes pass one-way                              
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y47D3B.2 185393_s_at P W All gene names: nlp-21; Y47D3B.2; 3M478; CE19175; CE24343; NM_067065; NM_067066; WBGene00003759; WP:CE19175; WP:CE24343 WormBase description: nlp-21 encodes nine predicted neuropeptide-like proteins; in C. elegans, nlp-21 is part of the GGARAF neuropeptide family that also contains nlp-9; nlp-21 is expressed in a variety of neurons, including AFD, five head neurons, the ventral nerve cord, one anterior pharyngeal neuron, and one tail neuron; nlp-21 expression is also detected in the embryo and the intestine; as loss of nlp-21 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-21-encoded peptides in development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 daf-16                                 
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y48E1B.8 183850_at P W All gene names: Y48E1B.8; 2N877; CE14866; WBGene00013007; WP:CE14866
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, herm soma enriched genes, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                 
                                              daf-16 Resveratrol                                                                 

Y71F9AL.4 192051_at P W All gene names: Y71F9AL.4; 1D475; CE25558; WBGene00022110; WP:CE25558 WormBase description: protein-tyrosine phosphatase
ZC443.6 191418_at P W All gene names: ugt-16; ZC443.6; 5N305; CE06590; WBGene00013901; WP:CE06590 WormBase description: UDP-glucuronosyltransferase
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T1 xenobiotic                               
                                              induced UDP-gl, ViswanathanM et al 2005  S2 daf-16                                 
                                              Resveratrol                                                                        

ZK1058.6 188607_at P W All gene names: nit-1; ZK1058.6; 3F11; CE01106; WBGene00014206; WP:CE01106 WormBase description: Nitrilase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

ZK525.1 172214_x_at P W All gene names: flp-15; ZK525.1; 3O754; CE16731; NM_067419; WBGene00001458; WP:CE16731 WormBase description: flp-15 encodes two FMRFamide-related short peptide neurotransmitter; the precise roles for these peptides in C. elegans neurotransmission are not yet known.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated