Hill et al 2000, developmentally modulated cluster, 239 genes

Gene list file name:Hill2000_T1_cluster6-5.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,5)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_C04E12.1 Aff_C04E12.1 P W
AFF_C16C2.2 Aff_C16C2.2 P W
AFF_K08B12.5 Aff_K08B12.5 P W
AFF_M02G9.1_3 Aff_M02G9.1_3 P W
AFF_R02D1.1 Aff_R02D1.1 P W
AFF_R09A1.4 Aff_R09A1.4 P W
AFF_T02H6.B Aff_T02H6.B P W
AFF_T27C5.1 Aff_T27C5.1 P W
Aff_TRP5 Aff_TRP5 P W
AFF_Y113G7B.M Aff_Y113G7B.M P W
AFF_Y39A1A.8 Aff_Y39A1A.8 P W
AFF_Y49E10.G Aff_Y49E10.G P W
AFF_Y49E10.X Aff_Y49E10.X P W
AFF_Y51A2D.16 Aff_Y51A2D.16 P W
AFF_Y52B11A.11 Aff_Y52B11A.11 P W
AFF_Y53G8B_93.A Aff_Y53G8B_93.A P W
AFF_Y71G12A_188.A Aff_Y71G12A_188.A P W
B0240.1 Aff_B0240.1 P W All gene names: rhr-2; B0240.1; B0240.1.1; B0240.1.2; 5M208; CE05172; NM_073560; WBGene00004359; WP:CE05172 WormBase description: rhr-2 encodes a predicted transmembrane protein with similarity to human Rh blood group antigens proposed to function in inorganic ion transport and metabolism; the role of RHR-2 in C. elegans development or behavior remains unclear, as loss of RHR-2 function via RNA-mediated interference does not result in any abnormalities. WormBase CDS description: erythrocyte plasma membrane glycoprotein like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

B0285.7 Aff_B0285.7 P W All gene names: B0285.7; 3F453; CE00646; WBGene00007139; WP:CE00646 WormBase description: Aminopeptidase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0336.4 Aff_B0336.4 P W All gene names: rgs-5; B0336.4; 3G791; CE32098; NM_065828; WBGene00004348; WBGene00015144; WP:CE32098 WormBase description: rgs-5 encodes a regulator of G protein signaling; by homology, RGS-5 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling; loss of rgs-5 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-5 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability; an rgs-5 transcriptional reporter is expressed in head neurons in larvae and adults.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

B0507.1 Aff_B0507.1 P W All gene names: B0507.1; 5J259; CE28815; WBGene00015218; WP:CE28815
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 LateList, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

B0513.1 Aff_B0513.1 P W All gene names: gei-5; lin-66; B0513.1; 4O657; CE15557; NM_070273; WBGene00001562; WP:CE15557 WormBase description: gei-5 encodes a novel protein that was identified in screens for molecules that interact with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1, that is essential for ventral enclosure during embryonic development; as loss of gei-5 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of GEI-5 in C. elegans development and/or behavior is not yet known; GEI-5 is expressed in body wall and vulval muscles, and is also detected in the intestine, neurons, and probably the hypodermis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

B0554.7 Aff_B0554.7 P W All gene names: B0554.7; B0554.8; B0554.9; 5A916; CE25744; WBGene00015260; WP:CE25744
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C01B7.6 Aff_C01B7.6 P W All gene names: rpm-1; rpm-3; sad-3; sam-1; syd-3; C01B7.6; 5J282; CE06730; NM_072866; WBGene00004457; WP:CE06730
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C02F12.7 Aff_C02F12.7 P W All gene names: tag-278; C02F12.7; CE03901; WBGene00015356; WP:CE03901; XE304
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C03C10.5 Aff_C03C10.5 P W All gene names: C03C10.5; 3F180; CE00876; WBGene00007271; WP:CE00876
C04E12.4 Aff_C04E12.4 P W All gene names: C04E12.4; CE30721; WBGene00015434; WP:CE30721
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C06A5.2 Aff_C06A5.2 P W All gene names: C06A5.2; 1G583; CE07949; WBGene00015500; WP:CE07949
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, shared sperm                                                    

C06G1.5 Aff_C06G1.5 P W All gene names: C06G1.5; CE37187; WBGene00015548; WP:CE37187; XR254 WormBase description: protein phosphatase PP2A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C08B6.4 Aff_C08B6.4 P W All gene names: C08B6.4; 5K597; CE05241; CE37189; WBGene00007425; WP:CE05241; WP:CE37189 WormBase description: chitinase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C08D8.2 Aff_C08D8.2 P W All gene names: tmd-2; C08D8.2; 5I819; CE35225; CE36976; NM_072750; NM_182343; WBGene00006582; WP:CE35225; WP:CE36976
C09F5.1 Aff_C09F5.1 P W All gene names: C09F5.1; 3B279; CE29572; WBGene00015647; WP:CE29572
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C09H5.4 Aff_C09H5.4 P W All gene names: str-143; C09H5.4; 5I546; CE08046; NM_072680; WBGene00006190; WP:CE08046 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C10G8.6 Aff_C10G8.6 P W All gene names: ceh-34; C10G8.6; 5F794; CE20496; NM_072018; WBGene00000455; WP:CE20496 WormBase description: ceh-34 encodes a homeodomain protein, homologous to human SIX2 (OMIM:604994), that is expressed very weakly in the pharynxes of late embryos and early larvae; it has no known function. WormBase CDS description: homeobox protein
C13A2.5 Aff_C13A2.5 P W All gene names: C13A2.5; 5H751; CE08117; WBGene00015722; WP:CE08117
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen                                                                       

C14B9.6 Aff_C14B9.5 P W All gene names: gei-8; pqn-12; C14B9.6; 3J202; CE29577; CE30603; CE36784; NM_066371; NM_066372; NM_171207; WBGene00001565; WP:CE29577; WP:CE30603; WP:CE36784 WormBase description: gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains; interacts with GEX-3 in yeast two-hybrid assays.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C14C6.1 Aff_C14C6.1 P W All gene names: srx-7; C14C6.1; 5B39; CE36375; NM_070844; WBGene00005898; WP:CE36375 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C14F5.3 Aff_C14F5.3 P W All gene names: tnt-3; C14F5.3; C14F5.3c.1; C14F5.3c.2; CE37089; CE37090; CE37091; NM_076936; NM_076937; NM_171736; WBGene00006588; WP:CE37089; WP:CE37090; WP:CE37091; XI556 WormBase description: tnt-3 is orthologous to the human gene TROPONIN T (TNNT2; OMIM:191045), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C15C8.2 Aff_C15C8.2 P W All gene names: cky-1; C15C8.2; 5N221; CE30427; NM_073783; WBGene00000521; WP:CE30427 WormBase description: cky-1 encodes a member of the basic-helix-loop-helix-PAS (bHLH-PAS) protein family; it is likely that CKY-1 together with AHA-1, another bHLH-PAS protein, has a role in pharyngeal function; CKY-1 is expressed in most non-neuronal pharyngeal cells. WormBase CDS description: Human ARNT-interacting protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C15H11.2 Aff_C15H11.2 P W All gene names: C15H11.2; 5O891; CE08179; WBGene00007614; WP:CE08179 WormBase description: G-protein coupled receptor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C16D9.6 Aff_C16D9.6 P W All gene names: C16D9.6; 5I726; CE35240; WBGene00015861; WP:CE35240
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C18C4.1 Aff_C18C4.1 P W All gene names: C18C4.1; 5G45; CE36271; WBGene00015964; WP:CE36271
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C23G10.5 Aff_C23G10.5 P W All gene names: C23G10.5; 3H281; CE39897; WBGene00016012; WP:CE39897
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Wang et al 2003  S4 Climbing, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C24A1.2 Aff_C24A1.2 P W All gene names: C24A1.2; 3B333; CE27722; CE38587; NM_064841; WBGene00016029; WP:CE27722; WP:CE38587
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C25F9.1 Aff_C25F9.1 P W All gene names: srw-85; C25F9.1; 5T900; CE31883; NM_075380; WBGene00005832; WP:CE31883 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              A, Reinke et al 2004, list of genes in cluster order                               

C26C6.5 Aff_C26C6.5 P W All gene names: dcp-66; C26C6.5; 1I114; CE08399; CE32312; NM_059710; NM_182031; WBGene00000938; WP:CE08399; WP:CE32312
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C29G2.3 Aff_C29G2.3 P W All gene names: C29G2.3; 5D59; CE08464; WBGene00016231; WP:CE08464
C31H5.5 Aff_C31H5.5 P W All gene names: C31H5.5; 1J624; CE17485; WBGene00007856; WP:CE17485
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C32E8.7 Aff_C32E8.7 P W All gene names: ric-19; C32E8.7; 1E346; CE39089; NM_058815; WBGene00004368; WP:CE39089 WormBase description: The ric-19 gene encodes an evolutionarily conserved cytosolic protein involved in neuroendocrine secretion via association with secretory vesicles.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C34B2.9 Aff_C34B2.9 P W All gene names: C34B2.9; 1L276; CE27816; WBGene00016394; WP:CE27816
C34H3.1 Aff_C34H3.C P W All gene names: tag-275; C34H3.1; CE35421; WBGene00016423; WP:CE35421; XG762
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, Wang et al 2003  S4 TransientList,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

C36F7.1 Aff_C36F7.1 P W All gene names: irx-1; C36F7.1; 1K114; CE17526; WBGene00007984; WP:CE17526 WormBase description: Homeobox domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C39F7.2 Aff_Y50D4A_25.A P W All gene names: C39F7.2; C39F7.2.1; C39F7.2.2; 5B704; CE27581; WBGene00016539; WP:CE27581
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C43D7.2 Aff_Y116F11.M P W All gene names: fbxb-65; C43D7.2; 5T805; CE18547; WBGene00008066; WP:CE18547 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C43E11.6 Aff_C43E11.6 P W All gene names: nab-1; C43E11.6; C43E11.6d.1; C43E11.6d.2; C43E11.6d.3; C43E11.6e.1; C43E11.6e.2; 1E803; CE08684; CE27846; CE27847; CE29717; CE37753; NM_058931; NM_058932; NM_058933; NM_171836; WBGene00003516; WP:CE08684; WP:CE27846; WP:CE27847; WP:CE29717; WP:CE37753 WormBase description: nab-1 encodes a PDZ and SAM domain-containing protein that is the sole C. elegans ortholog of the mammalian Neurabin/Spinophilin proteins; by homology, NAB-1 is predicted to interact with F-actin, ZYG-8/Doublecortin and the SAD-1 serine/threonine kinase to regulate interactions between the actin and microtubule networks during cell migration, growth cone guidance, and cell division; loss of nab-1 activity via RNAi has been reported to result in early embryonic lethality, dumpy and left-handed roller animals, as well as abnormalities in germ-line development and vulval morphogenesis; in large-scale screens, nab-1 RNAi did not result in any obvious abnormalities; NAB-1 translational reporter fusions show expression in hypodermal cells, neurons, and muscle.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C45H4.7 Aff_C45H4.7 P W All gene names: srbc-21; C45H4.7; 5C633; CE38050; NM_071183; WBGene00016689; WP:CE38050 WormBase description: 7TM chemoreceptor, srbc family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C47F8.7 Aff_C47F8.7 P W All gene names: C47F8.7; 1M904; CE17576; WBGene00008163; WP:CE17576
C48E7.5 Aff_C48E7.5 P W All gene names: cof-2; col-57; ofm-2; C48E7.5; 1G827; CE36279; NM_059403; WBGene00000583; WP:CE36279 WormBase description: ofm-2 encodes a homolog of human GLC1A, which when mutated leads to glaucome primary open angle (OMIM:137750)
C54G10.3 Aff_C54G10.3 P W All gene names: pmp-3; C54G10.3; 5P133; CE05518; NM_074219; WBGene00004060; WP:CE05518 WormBase description: peroxisomal membrane protein (PMP70)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C56C10.4 Aff_C56C10.4 P W All gene names: C56C10.4; 2G873; CE02569; WBGene00016962; WP:CE02569
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

D1081.5 Aff_D1081.5 P W All gene names: D1081.5; 1J53; CE05537; WBGene00008383; WP:CE05537 WormBase description: ankyrin motif
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

DY3.4 Aff_DY3.4 P W All gene names: trt-1; DY3.4; DY3.4a.1; DY3.4a.2; DY3.4b.1; DY3.4b.2; DY3.4b.3; DY3.4b.4; DY3.4b.5; 1J347; CE15748; CE27901; CETERT; NM_059972; NM_059973; WBGene00006618; WP:CE15748; WP:CE27901 WormBase description: trt-1 encodes C. elegans telomerase reverse transcriptase that affects fertility, maintenance of telomere length, and chromosome nondisjunction. WormBase CDS description: Reverse transcriptase (RNA-dependent DNA polymerase)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

F01E11.1 Aff_F01E11.1 P W All gene names: ugt-57; F01E11.1; CE04327; WBGene00017154; WP:CE04327; XH611 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F02D8.1 Aff_F02D8.1 P W All gene names: F02D8.1; 5P450; CE36124; WBGene00008520; WP:CE36124
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F07A5.4 Aff_F07A5.4 P W All gene names: F07A5.4; F07A5.4.1; F07A5.4.2; 1H934; CE28905; WBGene00008543; WP:CE28905
F07C3.3 Aff_F07C3.3 P W All gene names: F07C3.3; 5J708; CE07025; WBGene00017194; WP:CE07025
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F07C6.4 Aff_F07C6.5 P W All gene names: F07C6.4; F07C6.4b.1; F07C6.4b.2; F07C6.4c.1; F07C6.4c.2; 4N593; CE20653; CE35454; CE38699; WBGene00008555; WP:CE20653; WP:CE35454; WP:CE38699
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

F10F2.6 Aff_F10F2.6 P W All gene names: F10F2.6; 3F723; CE00951; WBGene00008658; WP:CE00951 WormBase description: C-lectin binding domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt males vs glp4 male enriched , Reinke et al                             
                                              2004, mixed sperm soma, Reinke et al 2004, list of                                 
                                              genes in cluster D, Reinke et al 2004, fem3 enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F10G2.6 Aff_F10G2.6 P W All gene names: srx-92; F10G2.6; F10G2.6a.1; F10G2.6a.2; 5H802; CE35273; CE38169; WBGene00005983; WP:CE35273; WP:CE38169 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F10G8.9 Aff_F10G8.9 P W All gene names: F10G8.9; 1K625; CE09344; CE30752; WBGene00008667; WP:CE09344; WP:CE30752 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

F11E6.8 Aff_F11E6.8 P W All gene names: F11E6.8; 4S388; CE19788; WBGene00008711; WP:CE19788 WormBase description: Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F13A2.4 Aff_F13A2.4 P W All gene names: F13A2.4; 5E874; CE09366; WBGene00017413; WP:CE09366
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F13D11.2 Aff_F13D11.2 P W All gene names: hbl-1; lin-57; F13D11.2; CE23646; CE27956; NM_076575; WBGene00001824; WP:CE23646; WP:CE27956; XG445 WormBase description: hbl-1 encodes a protein that contains nine putative zinc finger domains of the C2H2 type and affects embryonic viability, locomotion, egg laying, body morphology, and hypodermal differentiation; expressed in hypodermal precursor cells, neuronal precursor cells, and pharyngeal cells during embryogenesis and is primarily expressed in neurons during larval development.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F13D12.7 Aff_F13D12.7 P W All gene names: gpb-1; F13D12.7; F13D12.7.1; F13D12.7.2; F13D12.7.3; 2M34; CE02186; NM_064107; WBGene00001679; WP:CE02186 WormBase description: gpb-1 encodes a heterotrimeric G protein beta subunit that is required during embryonic development for the proper orientation of the mitotic spindle during early cell divisions and thus affects the orientation of early cell division axes, and is also required for larval viability, negatively regulates locomotion and egg-laying, and may affect germline development and osmotic balance; expressed in early embryos with highest expression at cell membranes and colocalizes with asters just before and during early cell divisions (this localization is dependent upon G alpha subunits); adults display high levels of expression in neurons with lower expression in the somatic gonad, vulva, and hypodermal seam cells and expression is also detected in the intestine, pharynx, body wall muscles and in the germline. WormBase CDS description: guanine nucleotide-binding protein beta subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F14H12.1 Aff_F14H12.1 P W All gene names: col-165; F14H12.1; CE07061; NM_076346; WBGene00000738; WP:CE07061; XE973 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F15B9.7 Aff_F15B9.7 P W All gene names: cdh-6; F15B9.7; 5N513; CE37969; NM_073855; WBGene00000398; WP:CE37969 WormBase description: cdh-6 encodes a cadherin homolog, with a domain resembling seven transmembrane-sequence receptors, that may be orthologous to the Drosophila cadherin STAN; both CDH-6 and STAN are homologous to secretin-type receptors, have extracellular domains of similar lengths and domain compositions (with similar numbers of cadherin, EGF, laminin G, GFS, and HormR domains); however, the cytoplasmic domains of CDH-6 and STAN are dissimilar. WormBase CDS description: cadherin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

F17A9.6 Aff_F17A9.6 P W All gene names: ceh-49; F17A9.6; 5G600; CE27970; WBGene00017538; WP:CE27970 WormBase description: F17A9.6 encodes a divergent ONECUT class CUT homeobox protein with a single N-terminal cut domain; F17A9.6 has an atypical tyrosine residue at position 48 of its homeodomain rather than a phenylalanine or tryptophan residue; the cut domain may be a compact DNA-binding domain composed of alpha helices; phylogenetically, F17A9.6 is (somewhat distantly) affiliated with C17H12.9, Drosophila ONECUT, and mammalian HNF6 proteins; F17A9.6 has no obvious function in mass RNAi assays. WormBase CDS description: homeobox protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F20D6.10 Aff_F20D6.10 P W All gene names: F20D6.10; 5I672; CE35282; WBGene00017639; WP:CE35282
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 TransientList,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F21A3.1 Aff_F21A3.1 P W All gene names: srh-276; F21A3.1; 5Q5; CE09515; NM_074462; WBGene00005481; WP:CE09515
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F21C10.5 Aff_F21C10.5 P W All gene names: F21C10.5; 5J607; CE07120; WBGene00017655; WP:CE07120
F21F3.4 Aff_F21F3.4 P W All gene names: F21F3.4; 1F465; CE09534; WBGene00017674; WP:CE09534
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, intrinsic,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F22B5.3 Aff_F22B5.3 P W All gene names: cut-3; F22B5.3; 2I736; CE02198; WBGene00009041; WP:CE02198 WormBase description: cuticulin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order                                  

F22F7.6 Aff_F22F7.6 P W All gene names: F22F7.6; 5C592; CE35286; WBGene00017723; WP:CE35286
F26H9.1 Aff_F26H9.1 P W All gene names: chis-1; F26H9.1; 1J865; CE09706; WBGene00009173; WP:CE09706
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F28B1.5 Aff_F28B1.5 P W All gene names: F28B1.5; 5R537; CE15917; WBGene00009199; WP:CE15917
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F28B3.1 Aff_F28B3.1 P W All gene names: F28B3.1; 1F517; CE36644; WBGene00017882; WP:CE36644
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

F29F11.5 Aff_F29F11.5 P W All gene names: ceh-22; F29F11.5; 5L155; CE05771; NM_073331; WBGene00000445; WP:CE05771 WormBase description: The ceh-22 gene encodes a NK-2 family homeodomain factor homologous to Drosophila TINMAN and vertebrate Nkx2-5 proteins. WormBase CDS description: homeobox protein (NK-2 subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S4 Early genes,                               
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F31F4.6 Aff_F31F4.6 P W All gene names: srh-266; F31F4.6; 5B143; CE09826; NM_070884; WBGene00005472; WP:CE09826 WormBase description: 7TM chemoreceptor, srh family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F31F4.7 Aff_F31F4.7 P W All gene names: ugt-42; F31F4.7; 5B127; CE36837; WBGene00017959; WP:CE36837 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F32A7.3 Aff_F32A7.3 P W All gene names: tag-271; F32A7.3; 1P422; CE36144; CE36145; WBGene00009304; WP:CE36144; WP:CE36145 WormBase description: G-protein coupled receptor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F33D11.1 Aff_F33D11.1 P W All gene names: F33D11.1; 1G427; CE09891; WBGene00018000; WP:CE09891 WormBase description: LIM protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, shared sperm, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

F33H1.1 Aff_F33H1.1 P W All gene names: daf-19; daf-24; F33H1.1; 2K448; CE17763; CE28019; WBGene00000914; WP:CE17763; WP:CE28019 WormBase description: DNA binding transcription factor
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McCarroll et al 2004  SFig5 conserved w/ yeast,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph                                 

F35E8.11 Aff_F35E8.11 P W All gene names: cdr-1; F35E8.11; 5Q403; CE15961; NM_074585; WBGene00000412; WP:CE15961 WormBase description: cdr-1 encodes a member of the cadmium-inducible lysosomal family that affects susceptibility to cadmium toxicity; expressed in intestinal cells. WormBase CDS description: glutathione S-transferases
                                              
Member of lists (Publications lists):
                                              McElwee et al 2003  T1 targets of                                 
                                              daf-16, Wang et al 2003  S5 genes common to feeding                                
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F36D4.1 Aff_F36D4.1 P W All gene names: F36D4.1; 5J899; CE33072; WBGene00018087; WP:CE33072
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, mixed sperm soma, Reinke et al 2004, wt herm                              
                                              vs wt herm enriched gen, Reinke et al 2004, fem3                                   
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated                                                                          

F38A6.1 Aff_F38A6.1 P W All gene names: Ce-fkh-1; fkh-1; pha-4; F38A6.1; 5V229; CE15998; NM_075605; WBGene00004013; WP:CE15998 WormBase description: Fork head domain, eukaryotic transcription factors
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F39G3.6 Aff_F39G3.6 P W All gene names: F39G3.6; 5F189; CE32186; WBGene00018211; WP:CE32186
F40F11.2 Aff_F40F11.2 P W All gene names: F40F11.2; 4M365; CE28557; WBGene00009587; WP:CE28557
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40F12.3 Aff_F40F12.3 P W All gene names: F40F12.3; 3L10; CE00618; WBGene00009592; WP:CE00618
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

F40G12.11 Aff_F40G12.11 P W All gene names: F40G12.11; 5O767; CE10196; WBGene00009606; WP:CE10196
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E                                                   

F40G12.5 Aff_F40G12.5 P W All gene names: F40G12.5; 5O750; CE10184; WBGene00009600; WP:CE10184
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F41A4.1 Aff_F41A4.1 P W All gene names: F41A4.1; 4B441; CE37517; WBGene00018256; WP:CE37517
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Romagnolo et al 2002  Fig3b Adhesion,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

F41E6.4 Aff_F41E6.3 P W All gene names: F41E6.4; 5J95; CE33782; CE37911; CE37912; WBGene00018285; WP:CE33782; WP:CE37911; WP:CE37912
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F43B10.2 Aff_F43B10.2 P W All gene names: tag-343; F43B10.2; CE35536; WBGene00018374; WP:CE35536; XR280
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

F46B3.4 Aff_F46B3.4 P W All gene names: F46B3.4; 5V78; CE18687; WBGene00009759; WP:CE18687 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, GO categories,                                  
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, shared sperm, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F47D12.1 Aff_F47D12.2 P W All gene names: gar-2; F47D12.1; F47D12.1b.1; F47D12.1b.2; 3H409; CE01946; CE24987; CE30134; CE30135; CE32893; WBGene00001518; WP:CE01946; WP:CE24987; WP:CE30134; WP:CE30135; WP:CE32893 WormBase description: G-protein-linked acetylcholine receptor GAR-2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F48C1.7 Aff_F48C1.7 P W All gene names: spe-11; F48C1.7; 1F900; CE10744; NM_059168; WBGene00004965; WP:CE10744 WormBase description: spe-11 encodes a novel protein that is required for early embryonic development and for regulating the dynamic morphology of sperm pseudopods; although the precise biological role of SPE-11 is not yet known, SPE-11 is one of the few paternally provided proteins known to be essential for embryogenesis, and may constitute a sperm-associated factor required for oocyte activation; SPE-11 is first detected in the nuclei of primary spermatocytes and then remains tightly associated with sperm chromatin until fertilization at which point it appears to be degraded.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F48C1.8 Aff_F48C1.8 P W All gene names: F48C1.8; 1F904; CE10746; WBGene00018600; WP:CE10746
F48E8.2 Aff_F48E8.2 P W All gene names: F48E8.2; 3G555; CE39157; WBGene00018609; WP:CE39157
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F49D11.6 Aff_F49D11.6 P W All gene names: F49D11.6; 1L496; CE17080; WBGene00018630; WP:CE17080
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

F49E11.1 Aff_F49E11.1 P W All gene names: mbk-2; F49E11.1; F49E11.1d.1; F49E11.1d.2; F49E11.1d.3; 4N799; CE05897; CE19878; CE23751; CE39735; CE39938; NM_070091; WBGene00003150; WP:CE05897; WP:CE19878; WP:CE23751; WP:CE39735; WP:CE39938 WormBase description: mbk-2 encodes one of two C. elegans members of the DYRK (dual-specificity Yak1-related kinase) family of proteins that includes S. cerevisiae Yak1 and the Drosophila minibrain and DYRK2 kinases; MBK-2 activity is required maternally for the egg-to-embryo transition that occurs during the earliest stages of embryonic development; specifically, MBK-2 is required for: 1) posterior localization of the germ plasm components PIE-1, POS-1, and PGL-1, and 2) postfertilization degradation of a subset of maternal proteins including the MEI-1 and MEI-2 meiosis-specific katanin subunits, the OMA-1 oocyte maturation factor, and residual PIE-1 that remains anteriorly localized after its normal posterior segregation; genetic analyses suggest that, in regulating the segregation and degradation of maternal proteins, mbk-2 lies downstream of the initial embryonic polarity cues established by the PAR/MEX proteins; MBK-2, whose activity appears to depend upon progression through the meiotic divisions, is expressed uniformly in the cortex of oocytes and newly fertilized zygotes; in later zygotes, just prior to the second meiotic division, MBK-2 becomes localized to discrete cortical foci, and by the first mitosis it is found predominantly on centrosomes and chromosomes; MBK-2 is also associated with P granules in the germline blastomeres P2, P3, and P4.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes                                        

F52A8.2 Aff_F52A8.2 P W All gene names: eat-11; gpb-2; F52A8.2; 1H896; CE17845; NM_059671; WBGene00001680; WP:CE17845 WormBase description: gpb-2 encodes an ortholog of Gbeta(5), that is dispensable for viability, but required for normal egg-laying, locomotion, and pharyngeal pumping; GBP-2 may regulate the interaction between the GOA-1 and EGL-30 signaling pathways based on genetic analysis; gpb-2 is expressed throughout development in the nervous system and in muscle, and expression is dependent upon expression of both EAT-16 and EGL-10. WormBase CDS description: guanine nucleotide-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan                                                                  

F52H3.1 Aff_F52H3.1 P W All gene names: let-268; F52H3.1; F52H3.1.1; F52H3.1.2; F52H3.1.3; 2K324; CE03397; NM_063769; WBGene00002497; WP:CE03397 WormBase description: let-268 encodes a procollagen lysyl hydroxylase that processes type IV collagen, a collagen secreted and incorporated into the basement membrane during embryogenesis (and encoded partly by emb-9); LET-268 activity is essential for type IV collagen processing and secretion and for the stability, but not the formation of, the basement membrane that provides mechanical support to body wall muscle once contraction begins; LET-268 also appears to be required for pharyngeal muscle contraction. WormBase CDS description: procollagen-lysine,2-oxoglutarate 5-dioxygenase precusor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F53H1.4 Aff_F53H1.4 P W All gene names: F53H1.4; 4C91; CE31539; CE33651; CE33652; WBGene00018778; WP:CE31539; WP:CE33651; WP:CE33652
F53H2.1 Aff_F53H2.1 P W All gene names: F53H2.1; 5U859; CE19886; WBGene00010004; WP:CE19886
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F54B8.1 Aff_F54B8.1 P W All gene names: F54B8.1; 5Q291; CE16103; WBGene00010016; WP:CE16103
F54D8.6 Aff_F54D8.6 P W All gene names: F54D8.6; 3G195; CE31000; WBGene00018802; WP:CE31000
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 daf-16 Resveratrol                                                     

F54E2.2 Aff_F54E2.2 P W All gene names: F54E2.2; R05D8.O; 5D275; CE17106; WBGene00018824; WP:CE17106
                                              
Member of lists (Publications lists):
                                              Zhang et al 2002, T1 mec-3 dependent                              
                                              genes, Zhang et al. 2002, Fig2b overexpressed in                                   
                                              mec-3MT                                                                            

F55H2.5 Aff_F55H2.5 P W All gene names: F55H2.5; 3K601; CE00212; WBGene00010131; WP:CE00212 WormBase description: Cytochrome B561
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F57A8.1 Aff_F57A8.1 P W All gene names: F57A8.1; F57A8.1.1; F57A8.1.2; F57A8.1.3; 5K529; CE34035; WBGene00010177; WP:CE34035 WormBase description: ETS domain
F57A8.7 Aff_F57A8.7 P W All gene names: F57A8.7; 5K557; CE05988; WBGene00010182; WP:CE05988
F57C7.3 Aff_F57C7.3 P W All gene names: sdn-1; F57C7.3; CE05996; CE32681; NM_171769; NM_171972; WBGene00004749; WP:CE05996; WP:CE32681; XL210 WormBase description: sdn-1 encodes a homolog of vertebrate syndecan-2, a type I transmembrane heparan sulfate proteoglycan; by homology, SDN-1 is predicted to play a role in cell-cell and cell-matrix adhesion; loss of sdn-1 activity via RNA-mediated interference (RNAi) indicates that SDN-1 is required for backward locomotion and for normal development of the egg-laying system, particularly gonadal and vulval structures; SDN-1 is expressed in a subset of neuronal cell bodies and their associated processes in the nerve ring, and also in select tail neurons. WormBase CDS description: syndecan like protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F58B6.2 Aff_F58B6.2 P W All gene names: tag-268; F58B6.2; 3C201; CE19472; WBGene00019030; WP:CE19472
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F58E6.10 Aff_F58E6.10 P W All gene names: unc-42; F58E6.10; 5K244; CE39164; NM_073118; WBGene00006778; WP:CE39164 WormBase description: unc-42 encodes a paired-like homeodomain protein of the Q50 class; UNC-42 is required to specify the fate of ASH sensory neurons, AVA, AVD, and AVE interneurons, and a subset of motor neurons; unc-42 mutants fail to express cell-surface receptors required for differentiated neuronal function (sra-6, srb-6, glr-1, glr-5, and glr-6); UNC-42 is also required for AVKR and HSNL growth cones to follow the PVPR and PVQL pioneer axons, for axonal outgrowth in the backward command interneurons AVA, AVD, and AVE, and for inhibition of ectopic FMRFamide-positive and GABAergic axons; unc-42 mutants are defective in mechanosensation, backward motion, and regulation of egg-laying. WormBase CDS description: Homeobox domain
F59B2.9 Aff_F59B2.9 P W All gene names: F59B2.9; 3K98; CE33287; WBGene00010311; WP:CE33287 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. WormBase CDS description: F-box domain.
F59C6.7 Aff_F59C6.9 P W All gene names: che-13; che-9; F59C6.7; 1L82; CE31704; NM_060348; WBGene00000492; WP:CE31704 WormBase description: che-13 encodes a novel protein homologous to mammalian IFT57/Hippi (OMIM:606621, protein interactor of Huntingtin-interacting protein 1 that is implicated in neuronal apoptosis in the Huntington disease state); CHE-13 is a proposed component of the intraflagellar transport (IFT) complex B, and is required for the construction and maintenance of cilia on a subset of sensory neurons; in addition, CHE-13 is required for proper localization of OSM-5, a murine polaris homolog, to IFT complex B; CHE-13 is expressed in ciliated sensory neurons including the amphids, phasmids, inner and outer labial neurons, and sensory rays of the male tail, localizing to the cilia base (transition zone) as well as to the axoneme; che-13 expression, like that of ciliogenic genes osm-1, osm-5, osm-6, and che-2, is positively regulated by the DAF-19 RFX-type transcription factor.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F59E11.1 Aff_F59E11.1 P W All gene names: srx-1; F59E11.1; 5J483; CE35886; NM_072927; WBGene00005892; WP:CE35886 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F59G1.5 Aff_F59G1.5 P W All gene names: ptp-2; stp-1; F59G1.5; F59G1.5.1; F59G1.5.2; 2G211; CE02705; NM_062783; WBGene00004214; WP:CE02705 WormBase description: PROTEIN-TYROSINE PHOSPHATASE
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

H09G03.1 Aff_H09G03.1 P W All gene names: H09G03.1; 3E319; CE34570; WBGene00019174; WP:CE34570
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown                                

H14N18.4 Aff_H14N18.4 P W All gene names: H14N18.4; 5J406; CE17976; CE30811; WBGene00019204; WP:CE17976; WP:CE30811 WormBase description: transpeptidase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Reinke et al 2004, wt herm vs wt herm                                 
                                              enriched gen, Wang et al 2003  S6 removed genes of                                 
                                              contamination                                                                      

H25P06.4 Aff_H25P06.4 P W All gene names: H25P06.4; 1L898; CE18825; WBGene00010417; WP:CE18825
H32K16.1 Aff_H32K16.1 P W All gene names: H32K16.1; 1J729; CE16186; WBGene00010421; WP:CE16186
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

H39E23.1 Aff_H39E23.1 P W All gene names: par-1; zyg-14; H39E23.1; 5O592; CE23838; CE27768; WBGene00003916; WP:CE23838; WP:CE27768 WormBase description: par-1 encodes a serine-threonine kinase; maternally provided PAR-1 is essential for establishing early embryonic polarity; PAR-1 is membrane-associated and asymmetrically localized to the posterior cortex of late one-cell stage embryos; PAR-1 is continuously asymmetrically localized to the P lineage (germline blastomeres) at each subsequent division, and evenly distributed to the Z2 and Z3 germline precursors before eventually fading at embryonic morphogenesis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K01A11.1 Aff_K01A11.1 P W All gene names: K01A11.1; 3E516; CE33529; WBGene00010449; WP:CE33529
K01D12.1 Aff_K01D12.1 P W All gene names: K01D12.1; 5M855; CE06040; WBGene00010461; WP:CE06040
K02F3.2 Aff_K02F3.2 P W All gene names: K02F3.2; 3B467; CE39385; WBGene00019326; WP:CE39385 WormBase description: The K02F3.2 gene encodes a homolog of human SLC25A13, which when mutated leads to adult onset type II citrullinaemia (OMIM:603471).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

K03E6.5 Aff_K03E6.5 P W All gene names: unc-1; unc-102; K03E6.5; CE28585; NM_075801; WBGene00006741; WP:CE28585; XB678 WormBase description: unc-1 encodes a homolog of human stomatin (OMIM:133090; deficient in stomatocytosis); UNC-1 protein is found in major nerve tracts, particularly in the nerve ring; unc-1 is required for anesthetic sensitivity; unc-24, which also encodes a stomatin homolog, is epistatic to unc-1 and is required for UNC-1 localization to the nerve ring. WormBase CDS description: Erythrocyte band 7 intergral membrane protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

K06H7.2 Aff_K06H7.2 P W All gene names: K06H7.2; 3J185; CE00253; WBGene00019456; WP:CE00253 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K07C11.10 Aff_K07C11.10 P W All gene names: K07C11.10; 5I706; CE35335; WBGene00019482; WP:CE35335
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K07C6.11 Aff_K07C6.11 P W All gene names: srx-68; K07C6.11; 5E385; CE17182; NM_071681; WBGene00005959; WP:CE17182 WormBase description: 7TM chemoreceptor, srx family
K07C6.9 Aff_K07C6.9 P W All gene names: srx-66; K07C6.9; 5E391; CE35336; NM_071684; WBGene00005957; WP:CE35336 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K08G2.7 Aff_K08G2.7 P W All gene names: srz-12; K08G2.7; 5Q338; CE11968; NM_074560; WBGene00010688; WP:CE11968
K09C6.3 Aff_K09C6.3 P W All gene names: K09C6.3; 5B329; CE11992; WBGene00019557; WP:CE11992
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K09E2.4 Aff_K09E2.4 P W All gene names: rig-1; K09E2.4; CE02817; CE34053; WBGene00004369; WP:CE02817; WP:CE34053; XJ289
K11C4.3 Aff_K11C4.3 P W All gene names: bgs-1; unc-70; K11C4.3; 5H371; CE28604; CE30159; WBGene00006803; WP:CE28604; WP:CE30159 WormBase description: unc-70 encodes two isoforms of a beta-spectrin ortholog required for normal body curvature and shape, normal movement, and correct localization of the alpha-spectrin SPC-1; the predominant UNC-70 isoform is expressed in all embryonic cells except the intestine, at the plasma membrane at sites of intercellular contact; UNC-70 becomes largely restricted to muscles and neurons from hatching to adulthood, with expression in adult spermetheca and hypodermis as well; conversely, the minor isoform is predominantly expressed in gut, and is also apposed to intercellular membrane junctions in embryos; sma-1 mutations (which impair the one beta-H-spectrin ortholog in C. elegans) enhance the unc-70 phenotype; UNC-70 is dispensable for viability (under undemanding laboratory culture conditions).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M01D7.7 Aff_M01D7.7 P W All gene names: egl-30; gqa-1; M01D7.7; 1C313; CE12272; CE30556; NM_170806; WBGene00001196; WP:CE12272; WP:CE30556 WormBase description: The egl-30 gene encodes an ortholog of the heterotrimeric G protein alpha subunit Gq (Gq/G11 class) that affects viability, locomotion, egg laying, synaptic transmission, and pharyngeal pumping; it genetically interacts with the goa-1 pathway, and is probably expressed ubiquitously, with highest expression in excitable cells. WormBase CDS description: guanine nucleotide-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

M01E10.2 Aff_M01E10.2 P W All gene names: M01E10.2; 3D126; CE19534; WBGene00019708; WP:CE19534
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

M03A8.2 Aff_M03A8.2 P W All gene names: M03A8.2; CE30679; WBGene00019748; WP:CE30679; XH435
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M03D4.4 Aff_M03D4.4 P W All gene names: M03D4.4; M03D4.4b.1; M03D4.4b.2; 4G888; CE29432; CE37783; WBGene00019751; WP:CE29432; WP:CE37783 WormBase description: zinc-finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

M162.5 Aff_M162.5 P W All gene names: M162.5; M162.5.1; M162.5.2; 5U235; CE23879; WBGene00010931; WP:CE23879
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, Wang et al 2003                            
                                               S6 removed genes of contamination                                                 

R01B10.5 Aff_R01B10.5 P W All gene names: R01B10.5; R01B10.5.1; R01B10.5.2; 5G528; CE26750; WBGene00019807; WP:CE26750
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R01H10.5 Aff_R01H10.5 P W All gene names: R01H10.5; 3L346; CE20023; WBGene00010973; WP:CE20023
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R03H4.5 Aff_R03H4.5 P W All gene names: R03H4.5; 5J500; CE07408; WBGene00019851; WP:CE07408
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R04F11.4 Aff_R04F11.4 P W All gene names: twk-13; twk-15; R04F11.4; 5M800; CE30561; NM_073690; WBGene00006668; WP:CE30561 WormBase description: twk-13 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains; as loss of TWK-13 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of TWK-13 in C. elegans development and/or behavior is not yet known; however, TWK-13 likely functions redundantly with other TWK channels; the TWK-13 expression pattern has not been determined. WormBase CDS description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Reinke                            
                                              et al 2004, wt herm vs wt herm enriched gen, Reinke et                             
                                              al 2004, IVb male soma enriched genes, Wang et al 2003                             
                                              S3  genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                            
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

R10E4.5 Aff_R10E4.5 P W All gene names: R10E4.5; 3F380; CE03559; WBGene00011201; WP:CE03559 WormBase description: endonuclease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, GO categories,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

R13F6.4 Aff_R13F6.4 P W All gene names: tag-152; ten-1; R13F6.4; 3H935; CE29452; CE32707; CE38629; WBGene00006498; WP:CE29452; WP:CE32707; WP:CE38629 WormBase description: This gene encodes a homolog of mammalian TNX
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order                                                                   

R13F6.6 Aff_R13F6.6 P W All gene names: zak-1; R13F6.6; 3H944; CE32708; CE39026; NM_066089; NM_181912; WBGene00006971; WP:CE32708; WP:CE39026
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T01C4.2 Aff_T01C4.2 P W All gene names: odr-2; T01C4.2; 5H593; CE28348; CE28349; CE28350; WBGene00003849; WP:CE28348; WP:CE28349; WP:CE28350 WormBase description: odr-2 encodes three isoforms of a predicted membrane-associated protein related to the Ly-6 (leukocyte antigen-6) family of GPI (glycosylated phosphatidylinositol)-linked signaling proteins; ODR-2 activity is required for proper functioning of the AWC olfactory neurons and thus for chemotaxis in response to AWC-sensed odorants; ODR-2 is expressed at high levels in sensory neurons, motor neurons, and interneurons, where it appears to be enriched in axons.
T01G9.3 Aff_T01G9.3 P W All gene names: T01G9.3; 1I859; CE06340; WBGene00011345; WP:CE06340 WormBase description: leucine rich repeats
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T03D3.2 Aff_T03D3.2 P W All gene names: srj-50; T03D3.2; 5D311; CE13070; NM_071366; WBGene00005629; WP:CE13070 WormBase description: 7TM chemoreceptor, srj family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T03D3.4 Aff_T03D3.4 P W All gene names: srh-36; T03D3.4; 5D296; CE25098; NM_071363; WBGene00005259; WP:CE25098 WormBase description: 7TM chemoreceptor, srh family
T04B8.5 Aff_T04B8.5 P W All gene names: T04B8.5; T04B8.5c.1; T04B8.5c.2; T04B8.5c.3; 2A906; CE18193; CE37041; CE39764; WBGene00020207; WP:CE18193; WP:CE37041; WP:CE39764
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

T04D3.2 Aff_T04D3.2 P W All gene names: sdz-30; T04D3.2; 1N899; CE13155; WBGene00011432; WP:CE13155
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T05A10.1 Aff_T05A10.1 P W All gene names: sma-9; T05A10.1; T05A10.1h.1; T05A10.1h.2; T05A10.1k.1; T05A10.1k.2; T05A10.1k.3; CE36395; CE36396; CE36397; CE36398; CE36399; CE36400; CE36401; CE36402; CE36403; CE36404; CE39627; NM_171771; NM_171772; WBGene00004862; WP:CE36395; WP:CE36396; WP:CE36397; WP:CE36398; WP:CE36399; WP:CE36400; WP:CE36401; WP:CE36402; WP:CE36403; WP:CE36404; WP:CE39627; XL401 WormBase description: sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain; SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396); SMA-9 proteins are required for growth to normally large body size.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T05B4.11 Aff_T05B4.11 P W All gene names: phat-5; T05B4.11; 5E600; CE13213; WBGene00020242; WP:CE13213
T05C3.7 Aff_T05C3.4 P W All gene names: srg-66; T05C3.7; 5F954; CE33305; NM_072048; WBGene00005223; WP:CE33305 WormBase description: 7TM chemoreceptor, srg family
T05G11.1 Aff_T05G11.1 P W All gene names: T05G11.1; 5Q408; CE18930; WBGene00011505; WP:CE18930 WormBase description: Zinc finger, C2H2 (2 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T06D10.1 Aff_T06D10.E P W All gene names: T06D10.1; 1J648; CE25101; WBGene00011531; WP:CE25101
T07E3.2 Aff_T07E3.2 P W All gene names: T07E3.2; 3H995; CE01383; WBGene00020313; WP:CE01383
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T08H4.1 Aff_T08H4.1 P W All gene names: tag-127; T08H4.1; 2E417; CE04926; WBGene00006476; WP:CE04926
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T10H10.1 Aff_T10H10.1 P W All gene names: hum-6; T10H10.1; CE13575; NM_076019; WBGene00002039; WP:CE13575; XC931 WormBase description: hum-6 is orthologous to the human gene MYOSIN VIIA (MYO7A; OMIM:276903), which when mutated leads to Usher syndrome type IB. WormBase CDS description: myosin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T10H4.4 Aff_T10H4.4 P W All gene names: T10H4.4; 5P750; CE16389; WBGene00011697; WP:CE16389
T12G3.4 Aff_T12G3.4 P W All gene names: T12G3.4; 4M813; CE06440; WBGene00011739; WP:CE06440 WormBase description: strictosidine synthase like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T15B7.11 Aff_T15B7.11 P W All gene names: T15B7.11; 5H296; CE13666; WBGene00020523; WP:CE13666
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T16G1.6 Aff_T16G1.6 P W All gene names: T16G1.6; 5N416; CE36202; WBGene00011800; WP:CE36202
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

T18H9.5 Aff_T18H9.5 P W All gene names: inx-10; opu-10; T18H9.5; 5J682; CE04973; CE37047; WBGene00002132; WP:CE04973; WP:CE37047 WormBase description: inx-10 encodes an innexin, an integral transmembrane channel protein that is a structural component of invertebrate gap junctions; as loss of INX-10 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of INX-10 in C. elegans development and/or behavior is not yet known; INX-10 is broadly expressed and detected in the developing embryonic pharynx and in larvae and adults in the pharyngeal corpus and terminal bulb, the sheath, several ventral cord neurons, rectal epithelial cells, the developing spermathecum, and in a few vulval cells.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

T19B4.7 Aff_T19B4.7 P W All gene names: unc-40; unc-91; T19B4.7; 1G248; CE25115; NM_059263; WBGene00006776; WP:CE25115 WormBase description: The unc-40 gene encodes a netrin receptor that is required to guide dorsal-ventral cell and axon migrations, and is required for correct polarization and migration of the neuroblasts QL and QR. WormBase CDS description: membrane protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E                                                   

T19H12.4 Aff_T19H12.4 P W All gene names: srd-33; T19H12.4; 5F351; CE13758; NM_071903; WBGene00005111; WP:CE13758 WormBase description: 7TM chemoreceptor, srd family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T20D4.16 Aff_T20D4.16 P W All gene names: T20D4.16; 5D870; CE13808; WBGene00020621; WP:CE13808
T20F5.4 Aff_T20F5.4 P W All gene names: T20F5.4; 1E482; CE13822; WBGene00020626; WP:CE13822
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Reinke et al 2004, list of genes in                                   
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

T23G5.6 Aff_T23G5.6 P W All gene names: T23G5.6; 3K331; CE37794; WBGene00011964; WP:CE37794
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T23H2.4 Aff_T23H2.4 P W All gene names: T23H2.4; 1H30; CE34377; WBGene00020743; WP:CE34377
T27A3.5 Aff_T27A3.5 P W All gene names: T27A3.5; 1G676; CE34379; WBGene00020841; WP:CE34379
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, shared sperm,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T27B1.2 Aff_T27B1.2 P W All gene names: T27B1.2; T27B1.2.1; T27B1.2.2; CE38558; WBGene00020848; WP:CE38558; XR153 WormBase description: zinc finger
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T28A11.16 Aff_T28A11.16 P W All gene names: T28A11.16; 5D734; CE14309; WBGene00020878; WP:CE14309
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Romagnolo et al 2002  Fig3b Unkown, Wang et al                              
                                              2003  S4 TransientList, Wang et al 2003  S3  genes pass                            
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

T28B11.1 Aff_T28B11.1 P W All gene names: T28B11.1; T28B11.1.1; T28B11.1.2; 5L194; CE14335; WBGene00012117; WP:CE14335 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

W01C9.3 Aff_W01C9.3 P W All gene names: pqn-73; W01C9.3; 2I835; CE02369; NM_063403; WBGene00004155; WP:CE02369 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

W02A11.1 Aff_W02A11.1 P W All gene names: W02A11.1; 1N322; CE18988; WBGene00012192; WP:CE18988
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Wang et al 2003  S5                              
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

W02B9.1 Aff_W02B9.1 P W All gene names: hmr-1; W02B9.1; Y52B11B.2; 1L668; CE25133; CE30357; WBGene00001980; WP:CE25133; WP:CE30357 WormBase description: hmr-1 encodes two isoforms of a classical cadherin that contain extracellular cadherin, EGF-like, and laminin G domains as well as a highly conserved intracellular domain that binds beta-catenin; by homology, the HMR-1 proteins are predicted to function as calcium-dependent, homophilic cell-cell adhesion receptors; in vivo, HMR-1A activity is required for mediating the cell migrations, cell shape changes, and presumably actin cytoskeleton rearrangements that occur during embryonic morphogenesis; HMR-1B is required for fasciculation and outgrowth of a subset of motor neuron processes; HMR-1 antibodies detect expression in all embryonic blastomeres at early stages of development but as hypodermal adherens junctions form and morphogenesis begins, HMR-1 becomes highly expressed in the apical junctions of all hypodermal cells; later, HMR-1 is expressed primarily at the apical margins of hypodermal, pharyngeal, and intestinal cells in a pattern consistent with localization to adherens junctions; an HMR-1B reporter fusion is expressed in neurons, including the DD, VD, and AS class of motor neurons; HMR-1 activity is required for proper localization of other junctional components, such as HMP-1/alpha-catenin and HMP-2/beta-catenin, but not for localization of AJM-1, the junctional component recognized by the MH27 antibody. WormBase CDS description: cadherin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

W03F9.4 Aff_W03F9.4 P W All gene names: W03F9.4; 5A626; CE21255; WBGene00021002; WP:CE21255 WormBase description: acetyltransferase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

W04E12.5 Aff_W04E12.5 P W All gene names: W04E12.5; 5U215; CE34101; WBGene00012250; WP:CE34101
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

W06H12.1 Aff_W06H12.1, Aff_Y53H1A.A P W All gene names: ztf-6; W06H12.1; W06H12.1.1; W06H12.1.2; 1L803; CE25145; WBGene00012317; WP:CE25145
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

W08E3.4 Aff_W08E3.4 P W All gene names: W08E3.4; 1N928; CE32508; WBGene00012345; WP:CE32508
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched                                                              

Y106G6E.6 Aff_Y106G6E.6 P W All gene names: Y106G6E.6; Y106G6E.6.1; Y106G6E.6.2; 1K804; CE29604; WBGene00013709; WP:CE29604 WormBase description: casein kinase like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

Y113G7A.10 Aff_Y113G7A.C P W All gene names: spe-19; Y113G7A.10; 5U510; CE34113; WBGene00013747; WP:CE34113
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, mixed sperm soma, Reinke et al 2004, wt herm                              
                                              vs wt herm enriched gen, Reinke et al 2004, fem3                                   
                                              enriched genes                                                                     

Y113G7B.23 Aff_Y113G7B.L P W All gene names: psa-1; Y113G7B.23; 5U710; CE25208; NM_075505; WBGene00004203; WP:CE25208 WormBase description: psa-1 encodes an ortholog of SWI3, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; psa-1 is probably required during mitosis of the T cells for asymmetric cell division, and in addition, is required for embryonic and larval development, as well as normal levels of fertility; psa-1 exhibits strong genetic interactions with lin-35/Rb, as psa-1 larval lethality and sterility at 20 degrees C are greatly enhanced in lin-35;psa-1 double mutants. WormBase CDS description: SWI/SNF protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y16B4A.1 Aff_Y16B4A.1 P W All gene names: unc-3; Y16B4A.1; CE29366; NM_078052; WBGene00006743; WP:CE29366; XP401 WormBase description: The unc-3 gene encodes a protein with homology to immunoglobulin (Ig) domain-containing transcription factors such as OLF-1 or SU(H). WormBase CDS description: transcription factor OLF-1 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y17G9A.4 Aff_Y17G9A_2.E P W All gene names: Y17G9A.4; 4F624; CE24178; WBGene00021197; WP:CE24178
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster D, Reinke et al 2004, fem3                                
                                              enriched genes, Reinke et al 2004, IVb male soma                                   
                                              enriched genes                                                                     

Y18D10A.8 Aff_Y18D10A.H P W All gene names: Y18D10A.8; Y18D10A.H; 1N443; CE21404; WBGene00012478; WP:CE21404 WormBase description: KH domain family of RNA binding proteins.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C                               

Y18H1A.8 Aff_Y18H1A_67.I P W All gene names: Y18H1A.8; 1B233; CE30211; WBGene00021212; WP:CE30211
Y19D10A.5 Aff_C01B4.G P W All gene names: Y19D10A.5; 5C859; WBGene00021220
                                              
Member of lists (Publications lists):
                                              Shen et al 2005  T1 hif-1 depend                                  
                                              hypoxia, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

Y23H5A.5 Aff_Y23H5A.5 P W All gene names: ctn-1; Y23H5A.5; Y23H5A.5d.1; Y23H5A.5d.2; 1D185; CE24191; CE30315; CE30316; CE31096; NM_058607; NM_058608; NM_170829; NM_170830; WBGene00000832; WP:CE24191; WP:CE30315; WP:CE30316; WP:CE31096 WormBase description: ctn-1 encodes a protein that belongs to the alpha-catulin family of catenin-like proteins; the precise function of ctn-1 is not yet known; the CTN-1 promoter-GFP fusion protein is expressed in body wall, vulval and anal muscle tissues.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y23H5B.8 Aff_Y74C10A_158.B P W All gene names: Y23H5B.8; 1D108; CE23004; WBGene00021279; WP:CE23004
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

Y24D9A.6 Aff_Y24D9A_29.B P W All gene names: Y24D9A.6; 4F164; CE21457; WBGene00021284; WP:CE21457
Y32F6A.3 Aff_Y32F6A.3 P W All gene names: pap-1; Y32F6A.3; 5K925; CE20204; NM_073282; WBGene00012528; WP:CE20204 WormBase description: POLY(A) POLYMERASE (EC 2.7.7.19) (PAP) (POLYNUCLEOTIDE ADENYLYLTRANSFERASE)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y37A1B.15 Aff_Y37A1B.15 P W All gene names: gei-18; Y37A1B.15; 4O730; CE36232; NM_070280; WBGene00001575; WP:CE36232 WormBase description: Src homology domain 3
Y37D8A.13 Aff_Y37D8A.13 P W All gene names: adm-1; max-3; unc-71; Y37D8A.13; 3N972; CE20217; NM_067279; WBGene00006804; WP:CE20217 WormBase description: unc-71 encodes an ADAM, a disintegrin and metalloprotease-containing transmembrane protein that is a member of the metzincin superfamily of proteases; UNC-71 is required non-cell autonomously for motor axon guidance and sex myoblast migration; UNC-71 does not appear to have an active metalloprotease domain, but functions with UNC-6/netrin and integrins INA-1/PAT-3 to provide guidance cues during axonal migration; UNC-71 is expressed in a restricted pattern in the excretory and excretory gland cells, some head neurons, the sphincter muscles, and hypodermal cells surrounding the vulva. WormBase CDS description: Disintegrin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E                                                   

Y40B10A.8 Aff_Y40B10A_107.B P W All gene names: nhr-86; Y40B10A.8; 5C540; CE31110; NM_071160; WBGene00003676; WP:CE31110
Y40D12A.3 Aff_Y40D12A.3 P W All gene names: srh-40; Y40D12A.3; 3H701; CE26695; NM_066058; WBGene00005263; WP:CE26695 WormBase description: 7TM chemoreceptor, srh family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y43F4B.3 Aff_Y43F4B.3 P W All gene names: Y43F4B.3; CE16628; WBGene00012802; WP:CE16628
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

Y45F3A.8 Aff_Y45F3A.8 P W All gene names: Y45F3A.8; 3L680; CE37285; WBGene00012863; WP:CE37285
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

Y47D3B.4 Aff_Y47D38.4 P W All gene names: Y47D3B.4; 3M497; CE37289; WBGene00012941; WP:CE37289
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

Y48G1C.8 Aff_Y48G1B_55.C P W All gene names: Y48G1C.8; CE36240; WBGene00021681; WP:CE36240
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes                                                  

Y48G8AL.7 Aff_Y48G8A_3945.D P W All gene names: Y48G8AL.7; 1B635; CE27275; WBGene00021687; WP:CE27275
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y51A2B.4 Aff_Y51A2B.4 P W All gene names: Y51A2B.4; 5S858; CE35101; WBGene00013068; WP:CE35101
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, mixed sperm soma, Reinke et al 2004, GO                                   
                                              categories, Reinke et al 2004, fem3 enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y51H1A.4 Aff_Y51H1A.4 P W All gene names: Y51H1A.4; Y51H1A.4.1; Y51H1A.4.2; CE20286; WBGene00013095; WP:CE20286 WormBase description: Y51H1A.4 is orthologous to the human gene P33ING1B (ING1; OMIM:601566), which when mutated leads to disease. WormBase CDS description: PHD-finger.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

Y51H7C.7 Aff_Y51H7C_255.E P W All gene names: Y51H7C.7; 2B693; CE22363; WBGene00021785; WP:CE22363
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

Y54E5A.3 Aff_Y105E8A.BB P W All gene names: Y54E5A.3; CE24455; WBGene00013199; WP:CE24455
Y55F3C.5 Aff_Y55F3C_751.E P W All gene names: Y55F3C.5; 4B469; CE22562; WBGene00021949; WP:CE22562
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen                                                                       

Y57G11A.1 Aff_Y57G11A.1 P W All gene names: tag-273; Y57G11A.1; 4P252; CE14908; CE33893; WBGene00013289; WP:CE14908; WP:CE33893 WormBase description: LIM domain containing proteins
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y63D3A.4 Aff_Y63D3A.4 P W All gene names: Y63D3A.4; 1O690; CE20335; WBGene00013405; WP:CE20335
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

Y65B4BR.4 Aff_Y65B4B_11.A P W All gene names: wwp-1; Y65B4BR.4; 1B15; CE31384; CE31385; CeWWP1; NM_170794; NM_171831; WBGene00007009; WP:CE31384; WP:CE31385
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y69H2.9 Aff_Y69H2.L P W All gene names: Y69H2.9; 5T183; CE22827; WBGene00013484; WP:CE22827
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

Y6B3A.1 Aff_Y87G2A.V P W All gene names: Y6B3A.1; 1O196; CE24576; CE36249; WBGene00012386; WP:CE24576; WP:CE36249 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

Y6B3B.7 Aff_Y6B3B.7 P W All gene names: Y6B3B.7; 1O341; CE20181; WBGene00012391; WP:CE20181
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, mixed sperm soma, Reinke et al 2004, wt herm                              
                                              vs wt herm enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, fem3 enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y6E2A.1 Aff_Y6E2A.1 P W All gene names: Y6E2A.1; 5Q190; CE16578; WBGene00012397; WP:CE16578
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y71H2AM.14 Aff_Y71H2_390.E P W All gene names: Y71H2AM.14; 3D832; CE38656; WBGene00022179; WP:CE38656
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y75B8A.5 Aff_Y75B8A.F P W All gene names: Y75B8A.5; Y75B8A.F; 3N202; CE23017; WBGene00013542; WP:CE23017 WormBase description: Leucine Rich Repeat (2 copies)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y76A2B.2 Aff_Y76A2B.2 P W All gene names: Y76A2B.2; 3O627; CE32279; WBGene00013574; WP:CE32279 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
Y79H2A.11 Aff_Y75B8A.A P W All gene names: apo-1; zyg-8; Y79H2A.11; Y79H2A.G; 3N161; CE31133; NM_067170; WBGene00006993; WP:CE31133 WormBase description: The zyg-8 gene encodes a protein with a doublecortin-like domain and a protein kinase domain; mutations of zyg-8 impair mitosis at the one-cell embryonic stage, which is normally asymmetrical, but which fails to show proper asymmetry in zyg-8 mutant embryos.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Unkown                                                                             

ZC449.5 Aff_ZC449.5 P W All gene names: ZC449.5; ZC449.5.1; ZC449.5.2; CE27350; WBGene00022615; WP:CE27350; XF654
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

ZK1025.4 Aff_ZK1025.4 P W All gene names: ZK1025.4; 1M48; CE37173; WBGene00014184; WP:CE37173
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b Unkown, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

ZK1098.10 Aff_ZK1098.10 P W All gene names: egl-39; unc-16; ZK1098.10; 3K645; CE00363; CE31846; NM_171221; WBGene00006755; WP:CE00363; WP:CE31846 WormBase description: unc-16 encodes a homolog of murine JIP3/JSAP and Drosophila SUNDAY DRIVER that is involved in vesicle transport, and that affects egg laying, locomotion, and defecation and physically interacts with JNK and JNK kinases; UNC-16 is expressed in neurons of the ventral cord, retrovesicular and preanal ganglia, the nerve ring, intestinal cells, seam and hypodermal cells, body wall and head muscle, and pharynx.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

ZK1098.3 Aff_ZK1098.3 P W All gene names: ZK1098.3; 3K626; CE01108; WBGene00014220; WP:CE01108 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: ribonuclease D
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

ZK1098.6 Aff_ZK1098.6 P W All gene names: ZK1098.6; 3K617; CE00369; WBGene00014223; WP:CE00369 WormBase description: ZK1098.6 encodes a coiled-coil protein that is individually dispensable for viability and gross morphology in RNAi assays, but is cotranscribed with ZK1098.1 and thus might act in concert with it. WormBase CDS description: Coiled coil protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

ZK1248.2 Aff_ZK1248.2 P W All gene names: col-74; ZK1248.2; 2G121; CE02902; NM_062758; WBGene00000650; WP:CE02902
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

ZK1307.6 Aff_ZK1307.6 P W All gene names: fzr-1; ZK1307.6; 2J930; CE01695; NM_063674; WBGene00001510; WP:CE01695 WormBase description: fzr-1 encodes a WD repeat-containing protein homologous to Cdh1/Hct1/FZR (OMIM:603619), a regulatory subunit of the anaphase-promoting complex/cyclosome (APC/C) required for anaphase initiation and exit from mitosis; FZR-1 is required for fertility, and also functions redundantly with lin-35/Rb to for normal embryogensis and control of postembryonic cell proliferation; FZR-1 probably regulates the levels of G1 cyclins, degradation of which is critical for G1 arrest. WormBase CDS description: CDC20 protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

ZK287.1 Aff_ZK287.1 P W All gene names: ZK287.1; ZK287.1.1; ZK287.1.2; 5K149; CE06610; WBGene00013962; WP:CE06610
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

ZK512.5 Aff_ZK512.5 P W All gene names: ZK512.5; ZK512.5.1; ZK512.5.2; 3K219; CE00411; WBGene00013985; WP:CE00411
ZK867.1 Aff_ZK867.1 P W All gene names: tag-239; ZK867.1; CE28198; CE29652; CE29653; CE35819; WBGene00022828; WBGene00044068; WP:CE28198; WP:CE29652; WP:CE29653; WP:CE35819; XH845 WormBase description: zinc finger
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol