Baugh et al 2003, subclass SE_122min, 91 genes

Gene list file name:Baugh2003_classSEpi_122min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass SE_93min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_C13B9.1 Aff_C13B9.1 P W
AFF_K08F11.6 Aff_K08F11.6 P W
AFF_R05F9.12 Aff_R05F9.12 P W
AFF_R11A5.5 Aff_R11A5.5 P W
AFF_Y50D7_162.A Aff_Y50D7_162.A P W
B0250.9 Aff_B0250.9 P W All gene names: B0250.9; 5U950; CE36579; WBGene00007126; WP:CE36579 WormBase description: B0250.9 is orthologous to the human gene 7-DEHYDROCHOLESTEROL REDUCTASE (DHCR7; OMIM:602858), which when mutated leads to disease. WormBase CDS description: sterol reductase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig5 conserved w/ yeast                              

B0272.4 Aff_B0272.4 P W All gene names: B0272.4; CE00853; WBGene00007130; WP:CE00853; XK47 WormBase description: enoyl-CoA hydratase/isomerase
C01B12.2 Aff_C01B12.2 P W All gene names: C01B12.2; 2A311; CE39124; WBGene00015285; WP:CE39124
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C05D9.3 Aff_C05D9.3 P W All gene names: C05D9.3; CE35381; WBGene00015472; WP:CE35381; XB733
C06G8.1 Aff_C06G8.1 P W All gene names: C06G8.1; 4L544; CE05229; WBGene00007384; WP:CE05229
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C09B8.4 Aff_C09B8.4 P W All gene names: C09B8.4; CE30242; WBGene00015623; WP:CE30242; XG638
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C09B9.1 Aff_C09B9.1 P W All gene names: C09B9.1; 4F805; CE06793; WBGene00015626; WP:CE06793
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C11H1.7 Aff_C11H1.7 P W All gene names: C11H1.7; CE18492; WBGene00007531; WP:CE18492; XO945
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C11H1.9 Aff_C11H1.5 P W All gene names: C11H1.9; CE05264; CE37316; WBGene00023500; WP:CE05264; WP:CE37316; XO938
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C14F11.2 Aff_C14F11.2 P W All gene names: C14F11.2; CE29578; WBGene00015779; WP:CE29578; XG828
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C16H3.3 Aff_C16H3.3 P W All gene names: C16H3.3; CE08237; CE27697; WBGene00015868; WP:CE08237; WP:CE27697; XS216
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

C33D3.1 Aff_C33D3.1 P W All gene names: elt-2; C33D3.1; CE31430; GATA; NM_077354; WBGene00001250; WP:CE31430; XL101 WormBase description: elt-2 encodes a GATA-type transcription factor most similar to the vertebrate GATA4-6 transcription factors required for cardiac and endoderm development (OMIM:601656, 600576); in C. elegans, ELT-2 is required redundantly with ELT-7 for initiating and maintaining terminal differentiation of the intestine; ELT-2 is expressed solely in the intestine, beginning embryonically at the 2E-cell stage and continuing in all intestinal cells throughout the life of the animal; in the regulatory hierarchy controlling endoderm development, ELT-2 lies downstream of the maternal regulators SKN-1 and POP-1 and the embryonic GATA factors MED-1/-2, and END-1/-3; in turn, ELT-2, along with ELT-7, likely regulates transcription of a number of intestine-specific terminal differentiation genes such as ges-1, ifb-2, pha-4, and the stress-induced mtl-2; ELT-2 also positively autoregulates, presumably to ensure maintenance of intestinal differentiation WormBase CDS description: zinc finger protein (GATA type)
C34H3.2 Aff_C34H3.A P W All gene names: odd-2; C34H3.2; CE23571; NM_076631; WBGene00003846; WP:CE23571; XG778 WormBase description: odd-2 encodes a protein with homology to the Drosophila ODD-SKIPPED family members and affects larval viability; expressed in the intestine. WormBase CDS description: C2H2-type zinc finger protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b TF                               

C44B7.9 Aff_C44B7.9 P W All gene names: pmp-2; C44B7.9; 2H174; CE02547; NM_063007; WBGene00004059; WP:CE02547 WormBase description: peroxisomal membrane protein (PMP70, an ATP-binding transport protein)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C44H4.3 Aff_C44H4.3 P W All gene names: sym-1; C44H4.3; CE08724; NM_078025; WBGene00006366; WP:CE08724; XP201 WormBase description: sym-1 encodes a protein containing 15 contiguous leucine-rich repeats (LRRs) that functionally overlaps with sym-5 and interacts with mec-8 with respect to embryonic viability and attachment of body muscle to the extracellular cuticle; expression begins at the time of embryonic elongation and SYM-1 is secreted from the apical hypodermal surface of the embryo WormBase CDS description: Drosophila chaoptin protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C45B11.3 Aff_C45B11.3 P W All gene names: dhs-18; C45B11.3; C45B11.3.1; C45B11.3.2; 5L526; CE05427; NM_073411; WBGene00000981; WP:CE05427 WormBase description: alcohol dehydrogenase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C45G9.11 Aff_C45G9.11 P W All gene names: C45G9.11; 3G154; CE27856; WBGene00016682; WP:CE27856
C46G7.1 Aff_C46G7.1 P W All gene names: C46G7.1; C46G7.1.1; C46G7.1.2; 4G783; CE37213; WBGene00016721; WP:CE37213
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

C54D1.5 Aff_C54D1.5 P W All gene names: C54D1.5; CE30916; WBGene00016913; WP:CE30916; XH764
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

E04A4.1 Aff_E04A4.1 P W All gene names: fbxb-78; E04A4.1; 4F501; CE32346; WBGene00017116; WP:CE32346 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F01G10.2 Aff_F01G10.2 P W All gene names: ech-8; F01G10.2; 4L2; CE35450; NM_069475; WBGene00001157; WP:CE35450 WormBase description: enoyl-CoA hydratase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F08A8.1 Aff_F08A8.1 P W All gene names: F08A8.1; F08A8.1a.1; F08A8.1a.2; F08A8.1b.1; F08A8.1b.2; F08A8.1b.3; F08A8.1b.4; F08A8.1c.1; F08A8.1c.2; 1N533; CE17633; CE36125; CE39570; WBGene00008564; WP:CE17633; WP:CE36125; WP:CE39570 WormBase description: F08A8.1 is orthologous to the human gene ACYL-CoA OXIDASE 1, PALMITOYL (ACOX1; OMIM:264470), which when mutated leads to pseudoneonatal adrenoleukodystrophy.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, GO categories, Reinke et                             
                                              al 2004, herm soma enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

F10C1.5 Aff_F10C1.5 P W All gene names: dmd-5; F10C1.5; 2G62; CE29753; WBGene00017326; WP:CE29753 WormBase description: D. melanogaster doublesex protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S4 Early genes,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F10D2.12 Aff_F10D2.8 P W All gene names: F10D2.12; 5H628; CE30746; WBGene00017337; WP:CE30746
F11A3.1 Aff_F11A3.1 P W All gene names: F11A3.1; F11A3.1.1; F11A3.1.2; 5J989; CE05585; WBGene00008669; WP:CE05585 WormBase description: 4-coumarate-CoA ligase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, GO categories, Reinke et                             
                                              al 2004, herm soma enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

F17C8.4 Aff_F17C8.4 P W All gene names: ras-2; F17C8.4; F17C8.4.1; F17C8.4.2; F17C8.4.3; 3F828; CE00958; NM_065571; Ras2; WBGene00004311; WP:CE00958 WormBase description: ras-2 encodes member of the Ras subfamily of RAS small GTPases with highest similarity to human M-Ras WormBase CDS description: Ras-like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

F18A11.4 Aff_Y38F1A.M P W All gene names: F18A11.4; Y38F1A.M; 2N306; CE20689; WBGene00008931; WP:CE20689
F20C5.2 Aff_F20C5.2 P W All gene names: klp-11; F20C5.2; 4J520; CE03239; CE27986; NM_171407; WBGene00002222; WP:CE03239; WP:CE27986; krp95 WormBase description: klp-11 encodes a predicted kinesin protein with high similarity to OSM-3 in the motor domain and encodes one of the motor subunits of heterotrimeric CeKinesin-II; expressed throughout the nervous system. WormBase CDS description: kinesin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F23F12.9 Aff_F23F12.9 P W All gene names: F23F12.9; 3H569; CE01256; CE32389; WBGene00017755; WP:CE01256; WP:CE32389
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              A, Reinke et al 2004, list of genes in cluster order                               

F30F8.5 Aff_F30F8.5 P W All gene names: F30F8.5; 1I424; CE37511; WBGene00009274; WP:CE37511
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F39B2.8 Aff_Y105E8A.VV P W All gene names: F39B2.8; CE30529; WBGene00009558; WP:CE30529
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F41D9.3 Aff_F41D9.3 P W All gene names: wrk-1; F41D9.3; F41D9.3b.1; F41D9.3b.2; CE30985; CE30986; CE30987; CE34015; CE37643; WBGene00006942; WP:CE30985; WP:CE30986; WP:CE30987; WP:CE34015; WP:CE37643; XJ6
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F41E6.5 Aff_F41E6.5 P W All gene names: F41E6.5; 5J85; CE31936; WBGene00018286; WP:CE31936 WormBase description: glycolate oxidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F43C9.4 Aff_F43C9.4 P W All gene names: mig-13; F43C9.4; CE28324; CE34562; NM_076419; WBGene00003245; WP:CE28324; WP:CE34562; XF416 WormBase description: mig-13 encodes a novel single-pass transmembrane protein with a N-terminal signal sequence and two motifs that have been implicated in protein-protein interactions: a CUB domain and a LDL receptor repeat; mig-13 affects the migration and thus the positioning of the Q neuroblasts and their descendants and also the anterior migration of the BDU neuron and may be a component of a global anterior/posterior migration system; a mig-13-gfp translational fusion protein is expressed in embryonic pharyngeal, hypodermal and anterior body neuronal precursors as well as in the cell bodies and axons of a number of neurons in the retrovascular ganglion and the ventral cord; mig-13 localizes to the plasma membrane; mig-13 expression along the A/P axis is restricted by hox gene activity.
F55B12.5 Aff_F55B12.5 P W All gene names: nrf-5; F55B12.5; F55B12.5.1; F55B12.5.2; 5O309; CE32438; NM_074023; WBGene00003812; WBGene00010090; WP:CE32438
F55C9.3 Aff_F55C9.3 P W All gene names: F55C9.3; 5T762; CE18735; WBGene00010100; WP:CE18735
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F56B3.10 Aff_F56B3.10 P W All gene names: gst-40; F56B3.10; 4B515; CE27168; NM_067580; WBGene00001788; WP:CE27168 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F56B3.7 Aff_F56B3.7 P W All gene names: ugt-52; F56B3.7; 4B535; CE23781; WBGene00018931; WP:CE23781 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F58G1.4 Aff_F58G1.4 P W All gene names: F58G1.4; 2N223; CE17924; WBGene00010266; WP:CE17924
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C                               

F59F5.8 Aff_F59F5.2 P W All gene names: F59F5.8; CE26716; WBGene00010346; WP:CE26716
H10E21.1 Aff_H10E21.1 P W All gene names: H10E21.1; 3A635; CE32456; WBGene00019182; WP:CE32456
H12C20.3 Aff_H12C20.3 P W All gene names: nhr-68; H12C20.3; 5M55; CE18808; NM_073535; WBGene00003658; WP:CE18808 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, herm soma enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K02D7.1 Aff_K02D7.1 P W All gene names: K02D7.1; 4B46; CE17994; WBGene00019298; WP:CE17994 WormBase description: K02D7.1 is orthologous to the human gene PURINE NUCLEOSIDE PHOSPHORYLASE (NP; OMIM:164050), which when mutated leads to disease. WormBase CDS description: phosphorylase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster A,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K05C4.9 Aff_K05C4.9 P W All gene names: K05C4.9; 1P318; CE19977; WBGene00010585; WP:CE19977 WormBase description: Leucine Rich Repeat (2 copies) (3 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

K08B4.4 Aff_K08B4.4 P W All gene names: ugt-20; K08B4.4; 4G846; CE18033; WBGene00019516; WP:CE18033 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

K09H11.1 Aff_K09H11.1 P W All gene names: K09H11.1; 5G231; CE21068; WBGene00019599; WP:CE21068
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

R11F4.1 Aff_R11F4.1 P W All gene names: R11F4.1; R11F4.1.1; R11F4.1.2; 2E383; CE04828; WBGene00020007; WP:CE04828 WormBase description: The R11F4.1 gene encodes a homolog of human glycerol kinase (GK), which when mutated leads to hyperglycerolemia (glycerol kinase deficiency; OMIM:307030). WormBase CDS description: Glycerol kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Wang et al 2003  S3  genes pass one-way ANOVA,                            
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R52.8 Aff_R52.8 P W All gene names: math-36; R52.8; 2C404; CE12838; WBGene00020079; WP:CE12838
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

T03D3.1 Aff_T03D3.1 P W All gene names: ugt-53; T03D3.1; 5D329; CE13068; WBGene00020182; WP:CE13068 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

T04G9.4 Aff_T04G9.4 P W All gene names: T04G9.4; CE04885; WBGene00020215; WP:CE04885; XB393 WormBase description: B. subtilis sfp protein; Anabaena sp. HETI protein
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

T05A10.1 Aff_T05A10.1 P W All gene names: sma-9; T05A10.1; T05A10.1h.1; T05A10.1h.2; T05A10.1k.1; T05A10.1k.2; T05A10.1k.3; CE36395; CE36396; CE36397; CE36398; CE36399; CE36400; CE36401; CE36402; CE36403; CE36404; CE39627; NM_171771; NM_171772; WBGene00004862; WP:CE36395; WP:CE36396; WP:CE36397; WP:CE36398; WP:CE36399; WP:CE36400; WP:CE36401; WP:CE36402; WP:CE36403; WP:CE36404; WP:CE39627; XL401 WormBase description: sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain; SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396); SMA-9 proteins are required for growth to normally large body size.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T05A7.3 Aff_T05A7.3 P W All gene names: T05A7.3; 2E967; CE04889; WBGene00020221; WP:CE04889
T08G5.9 Aff_T08G5.8 P W All gene names: T08G5.9; 5O526; CE18949; WBGene00011628; WP:CE18949
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T18D3.3 Aff_T18D3.3 P W All gene names: T18D3.3; CE03664; WBGene00011821; WP:CE03664; XN84 WormBase description: cobalt uptake like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T19B10.1 Aff_T19B10.1 P W All gene names: cyp-29A2; T19B10.1; 5L699; CE06455; NM_073446; WBGene00011830; WP:CE06455 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, McCarroll et al 2004  SFig5 conserved w/ yeast,                              
                                              Menzel et al 2001  T3 CYP genes, Reinke et al 2004,                                
                                              list of genes in cluster order, Reinke et al 2004, list                            
                                              of genes in cluster C, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

T20B3.1 Aff_T20B3.1 P W All gene names: T20B3.1; 5R299; CE20086; WBGene00011850; WP:CE20086 WormBase description: Carnitate acyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

T20D4.15 Aff_T20D4.15 P W All gene names: T20D4.15; 5D868; CE13806; WBGene00020620; WP:CE13806
T21B6.1 Aff_T21B6.1 P W All gene names: dgn-1; T21B6.1; T21B6.1.1; T21B6.1.2; CE03679; NM_077425; WBGene00000961; WP:CE03679; XL540
T21C12.2 Aff_T21C12.2 P W All gene names: hpd-1; T21C12.2; 3L625; CE02347; NM_066923; WBGene00001993; WP:CE02347 WormBase description: hpd-1 encodes a 4-hydroxyphenylpyruvate dioxygenase that is required for normally short lifespan and negative regulation of the dauer larval stage, with loss of hpd-1 function prolonging lifespan and promoting dauer formation; hpd-1 is a (perhaps evolutionarily conserved) target of transcriptional activation by DAF-16; HPD-1 is orthologous to human HPD (OMIM:276710, mutated in tyrosinemia type III). WormBase CDS description: 4-hydroxyphenylpyruvate dioxygenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

T22B7.3 Aff_T22B7.3 P W All gene names: T22B7.3; CE31242; WBGene00020672; WP:CE31242; XG273
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, IVb male soma enriched genes, Romagnolo et al                             
                                              2002  Fig3b Unkown                                                                 

T24C2.3 Aff_T24C2.3 P W All gene names: T24C2.3; CE03717; WBGene00011982; WP:CE03717; XP161
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T24F1.3 Aff_T24F1.3 P W All gene names: T24F1.3; T24F1.3b.1; T24F1.3b.2; T24F1.3b.3; 2L601; CE02363; CE38227; WBGene00011995; WP:CE02363; WP:CE38227 WormBase description: DAG binding domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

T26H2.9 Aff_T26H2.9 P W All gene names: nhr-79; T26H2.9; 5T682; CE31072; NM_075333; WBGene00003669; WP:CE31072 WormBase description: Zinc finger, C4 type (two domains)
W01B6.1 Aff_W01B6.1 P W All gene names: Wnt-2; cwn-2; W01B6.1; 4K833; CE03753; WBGene00000858; WP:CE03753 WormBase description: cwn-2 encodes a member of the WNT family; expressed at highest levels in embryos and expression declines and is almost absent by the third larval stage. WormBase CDS description: WNT-2 precursor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

W04G3.8 Aff_W04G3.8 P W All gene names: W04G3.8; W04G3.8.1; W04G3.8.2; CE19004; WBGene00012261; WP:CE19004; XL677
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Reinke et al 2004, IVb male soma enriched                               
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 LateList, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

Y110A2AL.4 Aff_Y110A2A_54.H P W All gene names: Y110A2AL.4; 2D131; CE33472; CE33473; WBGene00022441; WP:CE33472; WP:CE33473
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

Y111B2A.1 Aff_Y111B2A.A P W All gene names: Y111B2A.1; 3N580; CE34107; WBGene00013727; WP:CE34107
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

Y119D3B.17 Aff_Y119D3_447.A P W All gene names: pes-4; Y119D3B.17; 3C306; CE32746; NM_064950; WBGene00003978; WP:CE32746 WormBase description: pes-4 encodes a protein that contains two type 1 KH domains, RNA-binding domains that are present in a diverse group of nucleic acid-binding proteins; pes-4 was identified in promoter-trapping screens and by homology, is predicted to function as an RNA-binding protein; however, the precise role of PES-4 in C. elegans development and/or behavior is not yet known; a pes-4 reporter is expressed in three rectal epithelial cells from the L1 larval stage through adulthood and is also seen dispersed throughout the pharynx in all postembryonic stages.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y45G12C.3 Aff_Y45G12C.L P W All gene names: Y45G12C.3; Y45G12C.E; 5D31; WBGene00021566
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2                                           
                                              Glut-S-transferase, Reinke et al 2004, list of genes in                            
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Wang et al 2003  S3  genes pass one-way                              
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y48A6B.9 Aff_Y48A6B.9 P W All gene names: Y48A6B.9; Y48A6B.9.1; Y48A6B.9.2; 3M125; CE19192; WBGene00012970; WP:CE19192 WormBase description: Zinc-binding dehydrogenases
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y48E1B.10 Aff_Y48E1B.10 P W All gene names: gst-20; Y48E1B.10; 2N898; CE14870; NM_064457; WBGene00001768; WP:CE14870 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005 T1 xenobiotic                                
                                              induced GSTs, Reinke et al 2004, wt herm vs wt herm                                
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

Y49F6B.2 Aff_Y49F6B_108.H P W All gene names: Y49F6B.2; 2D793; CE25336; WBGene00021715; WP:CE25336
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y50D4B.2 Aff_Y50D4B_10.A P W All gene names: Y50D4B.2; 5B579; CE24401; WBGene00021741; WP:CE24401
Y53G8AM.7 Aff_Y53G8A_2706.B P W All gene names: Y53G8AM.7; 3E350; CE25413; WBGene00021807; WP:CE25413
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y57A10A.23 Aff_Y57A10A.W P W All gene names: Y57A10A.23; Y57A10A.23.1; Y57A10A.23.2; 2M531; CE22626; WBGene00013263; WP:CE22626
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

Y57A10C.6 Aff_Y57A10C.6 P W All gene names: P-44; Y57A10C.6; 2M714; CE18418; WBGene00013284; WP:CE18418 WormBase description: 3-keto-acyl-CoA thiolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y69H2.9 Aff_Y69H2.L P W All gene names: Y69H2.9; 5T183; CE22827; WBGene00013484; WP:CE22827
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

Y71G12B.11 Aff_Y71G12A_195.A P W All gene names: Y71G12B.11; 1C213; CE27024; CE29914; WBGene00022151; WP:CE27024; WP:CE29914
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y75B8A.13 Aff_Y75B8A.Q P W All gene names: Y75B8A.13; Y75B8A.Q; 3N294; CE23025; WBGene00013549; WP:CE23025
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y75B8A.29 Aff_Y75B8A.LL P W All gene names: Y75B8A.29; 3N421; CE23040; WBGene00013560; WP:CE23040
ZK1193.5 Aff_ZK1193.5 P W All gene names: ZK1193.5; CE33746; CE33747; CE33748; WBGene00022861; WP:CE33746; WP:CE33747; WP:CE33748; XB46 WormBase description: ZK1193.5 encodes, by alternative splicing, three proteins with a COMPASS (CMP) domain and two homeodomains; the CMP domain is found in the N-terminus of SATB-class CUT homeodomain proteins (e.g. human SATB1), and in Drosophila DEFECTIVE PROVENTRICULUS (DVE), to which ZK1193.5 may be orthologous; both DVE and ZK1193.5 encode two homeodomains which are highly divergent, but homologous between species, and probably derived by intragenic duplication; ZK1193.5 is required for a normally high rate of growth, fluid excretion, and larval viability in in mass RNAi assays.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

ZK177.2 Aff_ZK177.2 P W All gene names: ZK177.2; 2F807; CE02091; WBGene00022670; WP:CE02091
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

ZK270.1 Aff_ZK270.1 P W All gene names: ptr-23; ZK270.1; 1P503; CE15305; NM_061202; WBGene00004237; WP:CE15305
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order                                         

ZK550.6 Aff_ZK550.6 P W All gene names: ZK550.6; ZK550.6.1; ZK550.6.2; 4S204; CE20432; WBGene00014000; WP:CE20432 WormBase description: The ZK550.6 gene encodes an ortholog of the human gene PHYTANOYL-COA HYDROXYLASE (PHYH; PAHX; OMIM:602026), which when mutated leads to Refsum disease (OMIM:266500).
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, mixed sperm soma,                            
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, IVb male soma enriched genes                                                 

ZK622.3 Aff_ZK622.3 P W All gene names: phi-40; ZK622.3; ZK622.3a.1; ZK622.3a.2; ZK622.3a.3; ZK622.3c.1; ZK622.3c.10; ZK622.3c.11; ZK622.3c.2; ZK622.3c.3; ZK622.3c.4; ZK622.3c.5; ZK622.3c.6; ZK622.3c.7; ZK622.3c.8; ZK622.3c.9; ZK622.3d.1; ZK622.3d.2; ZK622.3d.3; ZK622.3d.4; ZK622.3d.5; ZK622.3d.6; ZK622.3d.7; ZK622.3d.8; 2F570; CE29162; CE32290; CE33504; CE33505; WBGene00022781; WP:CE29162; WP:CE32290; WP:CE33504; WP:CE33505
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

ZK909.5 Aff_ZK909.5 P W All gene names: fbxb-70; ZK909.5; 1P546; CE15481; WBGene00014149; WP:CE15481
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol