Baugh et al 2003, subclass SE_53min, 336 genes

Gene list file name:Baugh2003_classSEpi_53min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass SE_53min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AC3.3 Aff_AC3.3 P W All gene names: abu-1; pqn-1; AC3.3; 5K858; CE05133; NM_073266; WBGene00000024; WP:CE05133 WormBase description: abu-1 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-1 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-1 may help protect the organism from damage by improperly folded nascent protein.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  Fig6A Resveratrol,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

AFF_C10B5.2 Aff_C10B5.2 P W
AFF_F17C11.1 Aff_F17C11.1 P W
AFF_F40F12.2 Aff_F40F12.2 P W
AFF_H20H17.1 Aff_H20H17.1 P W
AFF_K08B12.3 Aff_K08B12.3 P W
AFF_M03A1.3 Aff_M03A1.3 P W
AFF_T08B6.1 Aff_T08B6.1 P W
AFF_T21C12.4 Aff_T21C12.4 P W
AFF_Y13C8_223.B Aff_Y13C8_223.B P W
AFF_Y17G9B.D Aff_Y17G9B.D P W
AFF_Y40B10A_112.B Aff_Y40B10A_112.B P W
AFF_Y41E3.5 Aff_Y41E3.5 P W
AFF_Y47D3A.O Aff_Y47D3A.O P W
AFF_Y54C5B.1 Aff_Y54C5B.1 P W
B0207.12 Aff_B0207.12 P W All gene names: avr-14; gbr-2; B0207.12; 1G544; CE26421; CE30227; CE32092; WBGene00000232; WP:CE26421; WP:CE30227; WP:CE32092 WormBase description: avr-14 encodes an alpha-type subunit of a glutamate-gated chloride channel homologous to human GLRA2, which when mutated leads to hyperekplexia (OMIM:149400); AVR-14 affects sensitivity to the antiparisitic drug, ivermectin, in parallel with avr-15 and glc-1 and in a genetic pathway with unc-9; it functions in the extrapharyngeal nervous system, and is expressed in a subset of neurons in the ring ganglia, ventral cord, and some mechanosensory neurons.
B0238.1 Aff_B0238.1 P W All gene names: B0238.1; 5F718; CE07691; WBGene00015067; WP:CE07691 WormBase description: carboxylesterase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ReichertK et al 2005 T1                                         

B0252.2 Aff_B0252.2 P W All gene names: asm-1; B0252.2; 2H201; CE30230; NM_063014; WBGene00000211; WP:CE30230 WormBase description: Spingomyelin phosphodiesterase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

B0285.7 Aff_B0285.7 P W All gene names: B0285.7; 3F453; CE00646; WBGene00007139; WP:CE00646 WormBase description: Aminopeptidase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0310.4 Aff_B0310.4 P W All gene names: B0310.4; CE03877; WBGene00015140; WP:CE03877; XB132 WormBase description: repetitive proline-rich cell wall protein
B0563.8 Aff_B0563.8 P W All gene names: B0563.8; CE39467; WBGene00015265; WP:CE39467; XJ788
C02B8.2 Aff_C02B8.2 P W All gene names: C02B8.2; CE03891; WBGene00015321; WP:CE03891; XI761
C05B5.4 Aff_C05B5.4 P W All gene names: C05B5.4; 3L81; CE00880; WBGene00007321; WP:CE00880
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05E4.1 Aff_C05E4.1 P W All gene names: pes-21; C05E4.1; 5B243; CE07935; NM_070917; WBGene00005643; WP:CE07935 WormBase description: srp-2 encodes an ovalbumin-like serpin (ov-serpin) member of the serine protease inhibitor superfamily that is orthologous to human NEUROSERPIN (OMIM:602445, mutated in familial encephalopathy with neuroserpin inclusion bodies); SRP-2 is predicted to function as a suicide substrate that inhibits the proteolytic activity of serine proteases, and in vitro, recombinant SRP-2 is able to inhibit granzyme B activity; however, as loss of srp-2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of SRP-2 in C. elegans development and/or behavior is not yet known; srp-2 expression is detected in hypodermal cells, particularly in the lateral seam cells. WormBase CDS description: serine protease inhibitor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Wang et al 2003  S6 removed genes of                             
                                              contamination                                                                      

C05G5.3 Aff_C05G5.3 P W All gene names: C05G5.3; CE30853; WBGene00007349; WP:CE30853; XP370
C06G4.2 Aff_C06G4.2 P W All gene names: clp-1; C06G4.2; C06G4.2a.1; C06G4.2a.2; C06G4.2b.1; C06G4.2b.2; C06G4.2b.3; 3J75; CE00517; CE30486; CE37743; CE37744; NM_066339; NM_066340; NM_171201; NM_171886; WBGene00000542; WP:CE00517; WP:CE30486; WP:CE37743; WP:CE37744 WormBase description: clp-1 encodes a calpain homolog that has significant identity to mammalian calpains over its whole length and that contains motifs typical of calpains, including a thiol (cysteine) protease active site and a Ca[2+]-binding domain; CLP-1 is required, in parallel with TRA-3 but in series with ASP-3 and ASP-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C07A9.6 Aff_C07A9.6 P W All gene names: ugt-60; C07A9.6; C07A9.6.1; C07A9.6.2; 3K766; CE33970; WBGene00007402; WP:CE33970 WormBase description: UDP-glucuronosyltransferase
C08F1.3 Aff_C08F1.3 P W All gene names: fbxb-13; C08F1.3; 2C79; CE08018; WBGene00015607; WP:CE08018 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
C08F1.6 Aff_C08F1.6 P W All gene names: C08F1.6; 2C78; CE08021; WBGene00015610; WP:CE08021
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C08F8.4 Aff_C08F8.4 P W All gene names: C08F8.4; 4L922; CE05251; WBGene00007446; WP:CE05251
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

C08F8.5 Aff_C08F8.5 P W All gene names: fbxb-9; C08F8.5; 4L924; CE05252; WBGene00007447; WP:CE05252 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

C10F3.4 Aff_C10F3.4 P W All gene names: C10F3.4; 5G449; CE30723; CE37609; WBGene00015678; WP:CE30723; WP:CE37609
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S3  genes pass                                
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

C10G8.6 Aff_C10G8.6 P W All gene names: ceh-34; C10G8.6; 5F794; CE20496; NM_072018; WBGene00000455; WP:CE20496 WormBase description: ceh-34 encodes a homeodomain protein, homologous to human SIX2 (OMIM:604994), that is expressed very weakly in the pharynxes of late embryos and early larvae; it has no known function. WormBase CDS description: homeobox protein
C10H11.3 Aff_C10H11.3 P W All gene names: ugt-25; C10H11.3; 1F303; CE08092; WBGene00015692; WP:CE08092 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, mixed sperm soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, fem3                                 
                                              enriched genes                                                                     

C13C12.2 Aff_C13C12.2 P W All gene names: C13C12.2; 5N4; CE08133; WBGene00007552; WP:CE08133
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Unkown,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

C15C8.1 Aff_C15C8.1 P W All gene names: C15C8.1; 5N215; CE05285; WBGene00007604; WP:CE05285
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C15H9.7 Aff_C15H9.7 P W All gene names: C15H9.7; CE06835; WBGene00015802; WP:CE06835; XG726 WormBase description: kynureninase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Murphy et al 2003  Fig2 Class2 shorten                                   
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C16C4.6 Aff_C16C4.6 P W All gene names: fbxb-98; C16C4.6; 2C131; CE08202; WBGene00015830; WP:CE08202 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C17B7.3 Aff_C17B7.3 P W All gene names: C17B7.3; 5D823; CE16851; WBGene00015877; WP:CE16851
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C17G1.3 Aff_C17G1.3 P W All gene names: ugt-23; C17G1.3; CE08282; WBGene00007650; WP:CE08282; XK542 WormBase description: UDP-glucosyltransferase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, GO categories, Reinke et                             
                                              al 2004, herm soma enriched genes, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

C18D1.1 Aff_C18D1.1 P W All gene names: die-1; C18D1.1; C18D1.1.1; C18D1.1.2; 2K352; CE01501; NM_063774; WBGene00000995; WP:CE01501 WormBase description: die-1 encodes a C2H2 zinc finger protein containing four fingers, homologous to CG18265-PA in Drosophila; DIE-1 is autonomously required in the posterior dorsal hypodermis for intercalation, for morphogenesis in other embryonic tissues, and for normal postembryonic growth and vulval development. WormBase CDS description: Zinc finger, C2H2 type (3 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

C18G1.2 Aff_C18G1.2 P W All gene names: C18G1.2; 5F251; CE17418; WBGene00015981; WP:CE17418 WormBase description: GATA transcription factor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C24B5.4 Aff_C24B5.4 P W All gene names: C24B5.4; 5J674; CE37611; WBGene00016046; WP:CE37611
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C24H11.2 Aff_C24H11.1 P W All gene names: C24H11.2; 3M880; CE18525; WBGene00007700; WP:CE18525 WormBase description: Protein phosphatase-1 (PP1)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt herm enriched gen, Reinke et al                             
                                              2004, fem3 enriched genes, Reinke et al 2004, wt males                             
                                              vs glp4 male enriched , Reinke et al 2004, mixed sperm                             
                                              soma, Reinke et al 2004, list of genes in cluster D,                               
                                              Reinke et al 2004, GO categories                                                   

C26B9.1 Aff_C26B9.1 P W All gene names: C26B9.1; CE30880; CE34262; NM_076507; WBGene00016131; WP:CE30880; WP:CE34262
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C27C7.7 Aff_C27C7.7 P W All gene names: C27C7.7; 1M11; CE18537; WBGene00007769; WP:CE18537
C28A5.4 Aff_C28A5.4 P W All gene names: ceh-43; C28A5.4; 3F536; CE05325; NM_065503; WBGene00000463; WP:CE05325 WormBase description: A homeobox protein of the Distal-less (Dll) class that is required for development of the anterior hypdermis during embryonic morphogenesis for cell adhesion; also affects embryonic and larval viability; it is predominantly expressed in the head hypdodermis, neuronal support cells and CAN neurons. WormBase CDS description: homeobox protein (distal-less subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Portman et al 2004  T1 25                                    
                                              candidate ray genes, Reinke et al 2004, fem1 enriched                              
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C28C12.7 Aff_C28C12.7 P W All gene names: spp-10; C28C12.7; C28C12.7a.1; C28C12.7a.2; 4J243; CE29486; CE31323; NM_171399; NM_171400; WBGene00004995; WP:CE29486; WP:CE31323 WormBase description: spp-10 encodes two protein isoforms that are orthologous to the human gene PROSAPOSIN (PSAP; OMIM:176801, mutated in Gaucher disease and metachromatic leukodystrophy); SPP-10A and -10B are predicted to have 3 and 4 embedded saposin sequences, that are likely to be split into individual saposin peptides by proteolysis; in mammals, saposins activate the enzymes sphingomyelinphosphodiesterase and beta-glucosylceramidase; spp-10 has no obvious function in mass RNAi assays. WormBase CDS description: 7TM chemoreceptor, spp family
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              fem3 enriched genes, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

C28G1.4 Aff_C28G1.4 P W All gene names: C28G1.4; CE04121; WBGene00016189; WP:CE04121; XJ468 WormBase description: zinc finger
C29F7.2 Aff_C29F7.2 P W All gene names: C29F7.2; CE35414; WBGene00007811; WP:CE35414; XO35
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, fem3 enriched genes                                                       

C29F7.6 Aff_C29F7.6 P W All gene names: C29F7.6; CE08447; WBGene00007813; WP:CE08447; XO59
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C30G4.3 Aff_C30G4.3 P W All gene names: gcy-11; C30G4.3; CE39901; NM_078354; WBGene00001537; WP:CE39901; XR660 WormBase description: guanylate cyclase receptor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C32B5.14 Aff_C32B5.14 P W All gene names: C32B5.14; 2B254; CE08522; WBGene00016307; WP:CE08522
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C32B5.16 Aff_C32B5.16 P W All gene names: sdz-4; C32B5.16; 2B251; CE08524; WBGene00016309; WP:CE08524
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C32B5.5 Aff_C32B5.5 P W All gene names: C32B5.5; 2B261; CE34725; WBGene00016298; WP:CE34725
C32E8.7 Aff_C32E8.7 P W All gene names: ric-19; C32E8.7; 1E346; CE39089; NM_058815; WBGene00004368; WP:CE39089 WormBase description: The ric-19 gene encodes an evolutionarily conserved cytosolic protein involved in neuroendocrine secretion via association with secretory vesicles.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C33A12.2 Aff_C33A12.2 P W All gene names: nlp-35; C33A12.2; 4K284; CE05348; WBGene00007881; WP:CE05348
C33C12.5 Aff_C33C12.5 P W All gene names: fbxb-38; C33C12.5; 2C458; CE08553; WBGene00016337; WP:CE08553 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

C34C6.6 Aff_C34C6.6 P W All gene names: PEX-5; prx-5; C34C6.6; 2I995; CE03054; CE36377; WBGene00004194; WP:CE03054; WP:CE36377 WormBase description: prx-5 encodes an ortholog of the human receptor for type I peroxisomal targeting signal protein, PXR1 (or PEX5; OMIM:600414), which when mutated leads to neonatal adrenoleukodystrophy or Zellweger syndrome; PXR1 protein is a component of the peroxisomal import machinery known to exist in organisms like yeast, plants and mammals.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B                               

C35C5.1 Aff_C35C5.1 P W All gene names: sdc-2; C35C5.1; CE18542; NM_077523; WBGene00004746; WP:CE18542; XM151 WormBase description: The sdc-2 gene encodes a protein that represses transcription of X chromosomes to achieve dosage compensation, and that also represses the male sex-determination gene her-1 to elicit hermaphrodite differentiation.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C38C6.4 Aff_C38C6.4 P W All gene names: sre-13; C38C6.4; 2O918; CE38042; NM_064641; WBGene00007997; WP:CE38042 WormBase description: 7TM receptor, sre family
C40A11.4 Aff_C40A11.4 P W All gene names: C40A11.4; 2C429; CE36797; WBGene00016547; WP:CE36797
C40A11.7 Aff_C40A11.7 P W All gene names: C40A11.7; 2C438; CE19370; WBGene00016550; WP:CE19370
C43D7.2 Aff_C43D7.2 P W All gene names: fbxb-65; C43D7.2; 5T805; CE18547; WBGene00008066; WP:CE18547 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C43D7.8 Aff_Y116F11.I P W All gene names: C43D7.8; 5T784; CE18552; WBGene00008070; WP:CE18552 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C44C10.1 Aff_C44C10.1 P W All gene names: col-180; C44C10.1; CE05408; NM_077559; WBGene00000753; WP:CE05408; XM332 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C47D12.4 Aff_C47D12.4 P W All gene names: C47D12.4; 2L969; CE20568; WBGene00008138; WP:CE20568 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C47E12.8 Aff_C47E12.8 P W All gene names: CeCRMP/DHP-2; dhp-2; C47E12.8; 4K745; CE05452; NM_069396; WBGene00000964; WP:CE05452 WormBase description: The dhp-2 gene encodes an ortholog of the human gene DIHYDROPYRIMIDINASE (DPYS), which when mutated leads to dihydropyrimidinuria (OMIM:222748). WormBase CDS description: Ulip like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C48E7.1 Aff_C48E7.1 P W All gene names: C48E7.1; 1G839; CE08816; WBGene00016749; WP:CE08816
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C50F2.1 Aff_C50F2.1 P W All gene names: C50F2.1; 1E461; CE36635; WBGene00016835; WP:CE36635
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C50F2.4 Aff_C50F2.4 P W All gene names: C50F2.4; 1E456; CE08910; WBGene00016838; WP:CE08910
C50F2.7 Aff_C50F2.7 P W All gene names: C50F2.7; 1E468; CE08913; WBGene00016840; WP:CE08913
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C51E3.2 Aff_C51E3.2 P W All gene names: srsx-27; C51E3.2; 5K627; CE33986; NM_073208; WBGene00008248; WP:CE33986 WormBase description: opoid receptor
C52A10.3 Aff_C52A10.3 P W All gene names: C52A10.3; 5F716; CE17584; WBGene00016864; WP:CE17584
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C52E2.1 Aff_C52E2.I P W All gene names: fbxb-95; C52E2.1; C52E2.I; 2C127; CE25826; WBGene00016880; WP:CE25826 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C53H9.2 Aff_C53H9.2 P W All gene names: C53H9.2; C53H9.2b.1; C53H9.2b.2; C53H9.2b.3; C53H9.2b.4; C53H9.2c.1; C53H9.2c.2; C53H9.2c.3; C53H9.2c.4; 1C307; CE08963; CE33575; CE39907; WBGene00016907; WP:CE08963; WP:CE33575; WP:CE39907 WormBase description: C53H9.2 encodes at least three protein isoforms orthologous to the GTP-binding proteins human GNL1 (HSR1; OMIM:143024) and murine MMR1, as well as LSG1 in S. cerevisiae and many other eukaryotic and bacterial proteins; one alternative transcription unit of the C53H9.2 locus, C53H9.2a, has a natural nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that C53H9.2 is a natural substrate for SMG-mediated nonsense suppresssion; C53H9.2 is required in mass RNAi assays for embryonic viability, normally rapid growth, and early embryonic nuclear positioning; since several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-8, rpl-10a, rpl-12) have protein products that are involved in translation, C53H9.2's protein products may function in translation as well, an inference supported by the observed role of LSG1 in cytoplasmic 60S ribosomal subunit biogenesis.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

D1053.1 Aff_D1053.1 P W All gene names: gst-42; D1053.1; CE03099; NM_077561; WBGene00001790; WP:CE03099; XM346 WormBase description: gst-42 is orthologous to the human gene GLUTATHIONE TRANSFERASE ZETA-1 (also known as MALEYLACETOACETATE ISOMERASE; GSTZ1; OMIM:603758), which when mutated is thought to lead to a variety of type I tyrosinemia. WormBase CDS description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, McCarroll et al 2004  SFig1-4 conserved                            
                                              w/ Drosoph, Reinke et al 2004, list of genes in cluster                            
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig3b Oxidation, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                 
                                              Climbing, Wang et al 2003  S3  genes pass one-way                                  
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

D1081.2 Aff_D1081.2 P W All gene names: unc-120; D1081.2; 1J37; CE05534; NM_059895; WBGene00006844; WP:CE05534 WormBase description: unc-120 encodes a member of the MADS-box family of transcription factors that contains human and Drosophila serum response factor (SRF) and Saccharomyces cerevisiae MCM1 and ARG80; UNC-120 is required for locomotion and muscle development and for formation of the normal number of muscle A and I bands; UNC-120 is also required for maintaining wild-type expression levels of the muscle components actin and myosin; UNC-120 is first expressed in the early embryo in body wall muscle precursors and later is expressed in both body wall and vulval muscles. WormBase CDS description: MADS domain
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order                                         

D2045.7 Aff_D2045.7 P W All gene names: D2045.7; 3L565; CE37761; WBGene00008424; WP:CE37761 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, fem3 enriched genes,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

E04F6.2 Aff_E04F6.2 P W All gene names: E04F6.2; 2H491; CE01214; WBGene00017122; WP:CE01214
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F01G10.7 Aff_F01G10.7 P W All gene names: F01G10.7; 4L4; CE09169; WBGene00008510; WP:CE09169 WormBase description: triacylglycerol lipase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

F07E5.2 Aff_F07E5.2 P W All gene names: fbxb-35; F07E5.2; 2C343; CE09215; WBGene00017208; WP:CE09215 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F07E5.6 Aff_F07E5.6 P W All gene names: fbxb-36; F07E5.6; 2C348; CE09218; WBGene00017211; WP:CE09218
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

F08D12.11 Aff_F08D12.11 P W All gene names: fbxb-111; F08D12.11; 2D64; CE09244; WBGene00017254; WP:CE09244 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
F08D12.8 Aff_F08D12.8 P W All gene names: fbxb-105; F08D12.8; 2D58; CE09241; WBGene00017251; WP:CE09241 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

F08D12.9 Aff_F08D12.9 P W All gene names: fbxb-109; sdz-10; F08D12.9; 2D60; CE09242; WBGene00017252; WP:CE09242 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

F08G2.7 Aff_F08G2.7 P W All gene names: F08G2.7; 2O128; CE19779; WBGene00008578; WP:CE19779
F09C3.4 Aff_F09C3.4 P W All gene names: fbxa-103; F09C3.4; 1O876; CE09279; WBGene00008612; WP:CE09279 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F09E5.10 Aff_F09E5.10 P W All gene names: F09E5.10; 2F638; CE02605; WBGene00017288; WP:CE02605
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F10D2.6 Aff_F10D2.6 P W All gene names: ugt-37; F10D2.6; 5H616; CE30747; WBGene00017332; WP:CE30747 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

F13C5.2 Aff_F13C5.2 P W All gene names: F13C5.2; CE19384; WBGene00017423; WP:CE19384; XB213 WormBase description: bromodomain-containing protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              A, Reinke et al 2004, list of genes in cluster order,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F14B6.3 Aff_F14B6.3 P W All gene names: F14B6.3; 1M823; CE17665; WBGene00008784; WP:CE17665
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F14B6.6 Aff_F14B6.6 P W All gene names: F14B6.6; 1M825; CE25856; WBGene00008787; WP:CE25856
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 TransientList,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F14E5.4 Aff_F14E5.4 P W All gene names: F14E5.4; 2I720; CE03207; WBGene00008802; WP:CE03207 WormBase description: acid phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, fem3 enriched genes, Reinke et al 2004, wt                                
                                              males vs glp4 male enriched , Reinke et al 2004, mixed                             
                                              sperm soma, Reinke et al 2004, list of genes in cluster                            
                                              D, Reinke et al 2004, herm soma enriched genes, Reinke                             
                                              et al 2004, GO categories                                                          

F15A4.2 Aff_F15A4.2 P W All gene names: F15A4.2; 2M755; CE15839; WBGene00008838; WP:CE15839 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F16H11.2 Aff_F16H11.2 P W All gene names: F16H11.2; CE04397; WBGene00017531; WP:CE04397; XF281
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F17A9.5 Aff_F17A9.5 P W All gene names: F17A9.5; 5G592; CE09449; WBGene00017537; WP:CE09449
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F17C11.2 Aff_F17C11.2 P W All gene names: F17C11.2; F17C11.2.1; F17C11.2.2; 5L427; CE05649; WBGene00008914; WP:CE05649
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F17E9.13 Aff_F35H10.1 P W All gene names: his-33; F17E9.13; 4J100; NM_069007; WBGene00001907 WormBase description: his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F19C7.3 Aff_F19C7.3 P W All gene names: F19C7.3; 4F361; CE04417; WBGene00017593; WP:CE04417
F19F10.5 Aff_F19F10.5 P W All gene names: F19F10.5; 5I36; CE09485; WBGene00017601; WP:CE09485 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F21D9.1 Aff_F21D9.1 P W All gene names: F21D9.1; 5T745; CE18627; WBGene00009015; WP:CE18627 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F21D9.3 Aff_F21D9.3 P W All gene names: F21D9.3; 5T724; CE18629; WBGene00009017; WP:CE18629
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, shared sperm                                                    

F21D9.5 Aff_F21D9.5 P W All gene names: F21D9.5; 5T721; CE18631; WBGene00009019; WP:CE18631
F22B7.9 Aff_F22B7.9 P W All gene names: F22B7.9; 3J742; CE29771; WBGene00017698; WP:CE29771
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 late-repression                                        
                                              Ethanol-respon, Lund et al 2002  Fig4 Mount 15,                                    
                                              Romagnolo et al 2002  Fig3b Unkown, Romagnolo et al                                
                                              2002 Fig5 genes in let-60 timecour, Wang et al 2003  S3                            
                                               genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                
                                              genes in the dauer exit, Wang et al 2003  S7 SAGE genes                            
                                              in the dataset, Wang et al 2003  S4 Dauer Enriched,                                
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

F22B8.6 Aff_F22B8.6 P W All gene names: F22B8.6; F22B8.6.1; F22B8.6.2; 5Q581; CE15884; WBGene00009048; WP:CE15884 WormBase description: cystathione gamma-lyase like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F22E5.1 Aff_F22E5.1 P W All gene names: F22E5.1; 2C965; CE09553; WBGene00017703; WP:CE09553
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Wang et al 2003                            
                                               S5 genes common to feeding ANOVA, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA                                                           

F22E5.17 Aff_F34D6.1 P W All gene names: F22E5.17; 2C969; CE27992; WBGene00017712; WP:CE27992
F22H10.4 Aff_F22H10.4 P W All gene names: F22H10.4; CE09573; WBGene00017728; WP:CE09573; XR296
F23A7.1 Aff_F23A7.1 P W All gene names: F23A7.1; CE09576; WBGene00009067; WP:CE09576; XQ831
F23D12.5 Aff_F23D12.5 P W All gene names: F23D12.5; CE15893; WBGene00009089; WP:CE15893; XP71
F25B4.6 Aff_F25B4.6 P W All gene names: phi-50; F25B4.6; 5G164; CE09624; WBGene00017769; WP:CE09624 WormBase description: F25B4.6 is orthologous to the human gene 3-HYDROXY-3-METHYLGLUTARYL COA SYNTHASE (HMGCS2; OMIM:600234), which when mutated leads to disease. WormBase CDS description: hydroxymethlglutaryl-CoA synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F25C8.2 Aff_F25C8.2 P W All gene names: amx-3; F25C8.2; 5V368; CE39726; NM_075633; WBGene00000139; WP:CE39726
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F25G6.3 Aff_F25G6.3 P W All gene names: acr-16; F25G6.3; 5J43; CE09639; CE32878; Ce21; NM_072806; WBGene00000055; WP:CE09639; WP:CE32878 WormBase description: acr-16 encodes an alpha-7-like homomer-forming subunit of the nicotinic acetylcholine receptor (nAChR) superfamily orthologous to human nicotinic cholinergic receptor alpha 7 (CHRNA7; OMIM:118511; possibly associated with schizophrenia and juvenile myoclonic epilepsy); ACR-16 functions as a ligand-gated ion channel that probably regulates fast action of acetylcholine at neuromuscular junctions and in the nervous system; ACR-16 is active as a homomeric receptor and responds robustly to acetylcholine when expressed in Xenopus oocytes.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3B neuro-specific                             
                                              genes, Romagnolo et al 2002  Fig3b signaling, Wang et                              
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F26D10.11 Aff_F26D10.11 P W All gene names: F26D10.11; 4S219; CE19811; WBGene00009155; WP:CE19811 WormBase description: F26D10.11 encodes an ortholog of murine TMHS (mutated in hurry-scurry/hscy mice), a predicted tetraspan membrane protein required for stereociliary function and a possible ortholog of human DFNB53; the cysteine mutated in hscy mice is conserved in F26D10.11.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F27D9.6 Aff_F27D9.6 P W All gene names: dhs-29; F27D9.6; CE28011; NM_076893; WBGene00000992; WP:CE28011; XI282
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F27E11.3 Aff_F27E11.3 P W All gene names: cfz-2; F27E11.3; 5D920; CE39149; CE39150; CFZ2; NM_071563; NM_071564; WBGene00000478; WP:CE39149; WP:CE39150 WormBase description: cfz-2 encodes a member of the Frizzled family of membrane receptors.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F29A7.1 Aff_F29A7.1 P W All gene names: fbxb-106; F29A7.1; 2D53; CE09772; WBGene00017911; WP:CE09772 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

F29A7.2 Aff_F29A7.2 P W All gene names: fbxb-107; F29A7.2; 2D51; CE36834; WBGene00017912; WP:CE36834
F31D5.6 Aff_F31D5.6 P W All gene names: F31D5.6; 2E501; CE19829; WBGene00017949; WP:CE19829 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F32A11.6 Aff_F32A11.6 P W All gene names: moe-3; F32A11.6; 2N452; CE18657; NM_064394; WBGene00003388; WP:CE18657 WormBase description: Zinc finger C-x8-C-x5-C-x3-H type (and similar).
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F35C11.6 Aff_F35C11.6 P W All gene names: F35C11.6; 2I548; CE02212; WBGene00009405; WP:CE02212
F35E2.2 Aff_F35E2.2 P W All gene names: F35E2.2; 1M326; CE17772; WBGene00009410; WP:CE17772 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F35E2.8 Aff_F35E2.8 P W All gene names: F35E2.8; 1M309; CE17777; WBGene00009415; WP:CE17777 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F35H8.7 Aff_F35H8.7 P W All gene names: wee-1.1; F35H8.7; 2J872; CE09940; NM_063657; WBGene00006938; WP:CE09940 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F36A2.3 Aff_F36A2.3 P W All gene names: F36A2.3; 1J377; CE15964; WBGene00009453; WP:CE15964
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F36H5.4 Aff_F36H5.4 P W All gene names: F36H5.4; 2C53; CE09961; WBGene00018103; WP:CE09961
F36H5.8 Aff_F36H5.8 P W All gene names: F36H5.8; 2C38; CE09965; WBGene00018106; WP:CE09965 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

F37D6.4 Aff_F37D6.4 P W All gene names: F37D6.4; 1L65; CE05821; WBGene00009510; WP:CE05821 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

F37H8.5 Aff_F37H8.5 P W All gene names: F37H8.5; CE15997; WBGene00009514; WP:CE15997
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F38H4.2 Aff_F38H4.2 P W All gene names: fbxb-3; F38H4.2; 4M605; CE10060; WBGene00009546; WP:CE10060 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F39F10.4 Aff_F39F10.4 P W All gene names: F39F10.4; CE07206; WBGene00018204; WP:CE07206; XR516
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

F39G3.2 Aff_F39G3.2 P W All gene names: F39G3.2; 5F217; CE35304; WBGene00018207; WP:CE35304
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F40F4.1 Aff_F40F4.1 P W All gene names: fbxb-71; F40F4.1; CE04531; WBGene00018236; WP:CE04531; XD883 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Romagnolo et al 2002  Fig3b Unkown, Romagnolo                            
                                              et al 2002 Fig5 genes in let-60 timecour, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F40F9.5 Aff_F40F9.5 P W All gene names: F40F9.5; 5K202; CE37834; WBGene00009582; WP:CE37834 WormBase description: translocase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

F40G9.5 Aff_F40G9.5 P W All gene names: F40G9.5; 3A799; CE19852; WBGene00018241; WP:CE19852
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F40G9.6 Aff_F40G9.6 P W All gene names: F40G9.6; 3A795; CE19853; WBGene00018242; WP:CE19853
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

F40H6.4 Aff_F40H6.4 P W All gene names: CE-TBX-11; tbx-11; F40H6.4; 3H134; CE01281; NM_065916; WBGene00006547; WP:CE01281 WormBase description: tbx-11 encodes a T-box transcription factor that is orthologous to members of the Tbx2 subfamily of T-box transcription factors; by homology, TBX-11 is predicted to function in transcriptional regulation during cellular differentiation, potentially as both an activator and a repressor; however, as loss of tbx-11 function via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of tbx-11 in C. elegans development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

F41C6.1 Aff_F41C6.1 P W All gene names: unc-106; unc-6; F41C6.1; F41C6.1.1; F41C6.1.2; CE04538; NM_076764; WBGene00006746; WP:CE04538; XH515 WormBase description: unc-6 encodes a netrin orthologous to the human and mouse netrin-1 precursor proteins; UNC-6 functions as a guidance molecule that regulates the migrations of pioneer axons and mesodermal cells, such as the gonadal distal tip cell, along the dorsoventral axis; a secreted molecule, UNC-6 is expressed during embryogenesis by epidermoblasts and neurons; UNC-6 is involved in both attractive and repulsive interactions that are mediated by the UNC-40 and UNC-5 netrin receptors, respectively.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

F42E11.1 Aff_F42E11.1 P W All gene names: pgp-4; F42E11.1; F42E11.1.1; F42E11.1.2; CE03308; NM_077501; WBGene00003998; WP:CE03308; XL981 WormBase description: pgp-4 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; PGP-4 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-4 activity via deletion mutations or RNAi results in no obvious defects, the precise role of PGP-4 in C. elegans development and/or behavior is not yet known; pgp-4 promoter-gfp fusion proteins are expressed in the larval excretory cell. WormBase CDS description: p-glycoprotein
F42G2.6 Aff_F42G2.6 P W All gene names: F42G2.6; 2C718; CE32659; WBGene00018355; WP:CE32659
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, Reinke et al 2004, IVb male soma enriched                              
                                              genes, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

F43C11.6 Aff_F43C11_37.D P W All gene names: F43C11.6; 2C633; CE20780; WBGene00018383; WP:CE20780
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F44A2.7 Aff_F44A2.7 P W All gene names: F44A2.7; 5J799; CE35308; WBGene00018406; WP:CE35308
F44C4.5 Aff_F44C4.5 P W All gene names: ppt-1; F44C4.5; 5H104; CE07253; NM_072283; WBGene00004092; WP:CE07253 WormBase description: ppt-1 is orthologous to the human gene PALMITOYL-PROTEIN THIOESTERASE 1 (PPT1; OMIM:600722), which when mutated leads to infantile neuronal ceroid lipofuscinosis 1 (OMIM:256730) and juvenile neuronal ceroid lipofuscinosis with granular osmiophilic deposits (OMIM:600680). WormBase CDS description: palmitoyl-protein thioesterase precursor
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, IVb male soma enriched                                 
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F44E5.2 Aff_F44E5.2 P W All gene names: F44E5.2; 2M63; CE18677; WBGene00009689; WP:CE18677 WormBase description: Leucine Rich Repeat (2 copies)
F45C12.11 Aff_F45C12.11 P W All gene names: bath-32; sdz-18; F45C12.11; 2B994; CE10456; WBGene00018442; WP:CE10456
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45C12.13 Aff_F45C12.13 P W All gene names: fbxb-48; F45C12.13; 2C6; CE10460; WBGene00018444; WP:CE10460
F45C12.14 Aff_F45C12.14 P W All gene names: fbxb-5; F45C12.14; 2C8; CE36850; WBGene00018445; WP:CE36850 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
F45C12.6 Aff_F45C12.6 P W All gene names: F45C12.6; 2C13; CE10446; WBGene00018437; WP:CE10446
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F45D11.13 Aff_F45D11_40.E P W All gene names: fbxb-30; F45D11.13; 2B292; CE35933; WBGene00018458; WP:CE35933
F45D11.6 Aff_F45D11_40.H P W All gene names: F45D11.6; 2B289; CE35935; WBGene00018453; WP:CE35935
F49B2.1 Aff_F49B2.1 P W All gene names: fbxb-8; F49B2.1; 1O891; CE28559; WBGene00009861; WP:CE28559 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes                                                                              

F52E4.8 Aff_F32E4.8 P W All gene names: F32E4.8; F52E4.8; CE09875; WBGene00018704; WP:CE09875; XD718
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F52H3.5 Aff_F52H3.5 P W All gene names: F52H3.5; 2K321; CE03401; WBGene00009947; WP:CE03401
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F53B2.6 Aff_F53B2.6 P W All gene names: ham-1; F53B2.6; 4N309; CE17851; NM_070000; WBGene00001820; WP:CE17851 WormBase description: ham-1 encodes a novel protein with a winged helix DNA-binding motif; ham-1 is required for the asymmetric divisions of several neuroblasts in the developing embryo and may influence their spindle position; ham-1 mutations also exhibit HSN motor neuron migration defects; HAM-1 interacts with itself in a yeast two-hybrid screen and observations suggest that its multimerization is required for its proper localization; HAM-1 is cytoplasmic and is asymmetrically distributed to the posterior of the HSNPHB neuroblast.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S4 Climbing,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F53C3.11 Aff_F53C3.11 P W All gene names: F53C3.11; 2E196; CE19449; WBGene00018754; WP:CE19449
F53H2.3 Aff_F53H2.3 P W All gene names: F53H2.3; 5U866; CE19888; WBGene00010006; WP:CE19888
F53H8.3 Aff_F53H8.3 P W All gene names: F53H8.3; CE04656; WBGene00018779; WP:CE04656; XB557 WormBase description: glucose transporter
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Early genes, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F55A4.8 Aff_F55A4.8 P W All gene names: F55A4.8; F55A4.8c.1; F55A4.8c.2; CE19463; CE31182; CE31183; WBGene00018860; WP:CE19463; WP:CE31182; WP:CE31183; XB658
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

F55A8.1 Aff_Y48A5B.B P W All gene names: egl-18; elt-5; pvl-3; F55A8.1; F55A8.1.1; F55A8.1.2; F55A8.1.3; 4C681; CE28339; NM_067742; WBGene00001186; WP:CE28339 WormBase description: egl-18 encodes a member of the GATA-family of transcription factors that affects cell migration, cell fate specification; expressed in the head, in hypodermal seam cells, VC neurons, and vulval precursor cells. WormBase CDS description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F55C9.1 Aff_F55C9.1 P W All gene names: fbxb-117; F55C9.1; 5T759; CE18733; WBGene00010099; WP:CE18733 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.10 Aff_F55C9.10 P W All gene names: fbxb-61; F55C9.10; 5T775; CE18742; WBGene00010106; WP:CE18742 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.13 Aff_F55C9.9 P W All gene names: fbxb-63; F55C9.13; F55C9.9; CE18741; WBGene00044197; WP:CE18741
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F55C9.5 Aff_F55C9.5 P W All gene names: F55C9.5; 5T764; CE18737; WBGene00010102; WP:CE18737
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F55G7.2 Aff_F55G7.2 P W All gene names: F55G7.2; CE03424; WBGene00010120; WP:CE03424; XM546
F56A12.1 Aff_F56A12.1 P W All gene names: mig-3; unc-39; F56A12.1; 5O855; CE37921; NM_074162; WBGene00006775; WP:CE37921 WormBase description: unc-39 encodes a homeodomain transcription factor that belongs to the Six4/5 family of homeodomain proteins that includes human Six5; UNC-39 is required for axonal pathfinding in anterior-derived neurons and for specification of most mesodermal cell types and may regulate a developmental decision between migration and differentiation; UNC-39 is expressed in the embryo in anterior neurons, posteriorly derived mesoderm (somatic gonad, M mesoblast, and possibly the coelomocytes and muIntR), the CAN neurons, and body wall muscle. WormBase CDS description: so class homeobox protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56B3.2 Aff_F56B3.2 P W All gene names: F56B3.2; 4B518; CE29402; CE31545; WBGene00018928; WP:CE29402; WP:CE31545
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F56H6.2 Aff_F56H6.2 P W All gene names: F56H6.2; 1M871; CE28567; WBGene00010163; WP:CE28567
F58E1.10 Aff_F58E1.10 P W All gene names: F58E1.10; 2B980; CE11390; WBGene00019041; WP:CE11390
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

F58E1.11 Aff_F58E1.11 P W All gene names: F58E1.11; 2B982; CE36171; WBGene00019042; WP:CE36171
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              daf-16 Resveratrol                                                                 

F58E1.12 Aff_F58E1.12 P W All gene names: F58E1.12; 2B984; CE11394; WBGene00019043; WP:CE11394
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Romagnolo et al 2002  Fig3b Unkown                                  

F58E1.14 Aff_F58E1.14 P W All gene names: fbxb-47; F58E1.14; 2B992; CE11398; WBGene00019045; WP:CE11398 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

F58E1.3 Aff_F58E1.3 P W All gene names: fbxb-26; F58E1.3; 2B971; CE11376; WBGene00019035; WP:CE11376 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F58E1.9 Aff_F58E1.9 P W All gene names: fbxb-19; F58E1.9; 2B976; CE11388; WBGene00019040; WP:CE11388 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F58E10.2 Aff_F58E10.2 P W All gene names: end-1; F58E10.2; 5O467; CE18784; NM_074074; WBGene00001310; WP:CE18784 WormBase description: end-1 encodes a GATA-like transcription factor sufficient to initiate endoderm differentiation and binds to the canonical target DNA sequence WGATAR with specificity similar to GATA-1 and D4 transcription factors; its expression bypasses requirement for maternal SKN-1 and the maternal Wnt signaling pathway in endoderm formation and it activates endoderm differentiation in isolated Xenopus ectoderm. WormBase CDS description: GATA family of transcription factors
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F58E10.5 Aff_F58E10.5 P W All gene names: end-3; F58E10.5; 5O495; CE18787; NM_074079; WBGene00001311; WP:CE18787 WormBase description: end-3 encodes a GATA zinc finger protein, paralogous to end-1, that helps specify mesoendodermal (as opposed to mesectodermal) lineages derived from the E blastomere. WormBase CDS description: GATA family of transcription factors
F58E10.7 Aff_F58E10.7 P W All gene names: F58E10.7; 5O473; CE18789; WBGene00010262; WP:CE18789
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Romagnolo et al 2002  Fig3b Unkown,                                
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

F59A1.10 Aff_F59A1.10 P W All gene names: F59A1.10; 5S141; CE18794; WBGene00010296; WP:CE18794
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen                                                                       

H24O09.2 Aff_H24O09.B P W All gene names: fbxb-72; H24O09.2; 5B202; CE23825; WBGene00019243; WP:CE23825
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt males vs glp4 male enriched , Reinke et al                             
                                              2004, mixed sperm soma, Reinke et al 2004, wt herm vs                              
                                              wt herm enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster D, Reinke et al 2004, fem3 enriched genes                               

K02E2.4 Aff_K02E2.4 P W All gene names: ins-35; K02E2.4; 5U845; CE18839; NM_075525; WBGene00002118; WP:CE18839 WormBase description: ins-35 encodes one of several insulin-related peptides.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

K02F2.6 Aff_K02F2.6 P W All gene names: ser-3; K02F2.6; 1H400; CE17158; NM_059553; WBGene00004778; WP:CE17158 WormBase description: ser-3 encodes a predicted G protein-coupled receptor that is a candidate metabotropic serotonin receptor; SER-3 activity is required for fertility and for embryonic development; to date, SER-3 expression has been detected in the pharynx. WormBase CDS description: seven trans-membrane receptor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

K05F1.5 Aff_K05F1.4 P W All gene names: K05F1.5; 2G83; CE28587; WBGene00019407; WP:CE28587
K05F6.1 Aff_K05F6.1 P W All gene names: fbxb-49; K05F6.1; 2B861; CE17159; WBGene00019412; WP:CE17159
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

K05F6.4 Aff_K05F6.4 P W All gene names: K05F6.4; 2B837; CE17162; WBGene00019415; WP:CE17162 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

K05F6.9 Aff_K05F6.9 P W All gene names: fbxb-46; K05F6.9; 2B858; CE17167; WBGene00019420; WP:CE17167 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

K07C5.5 Aff_K07C5.5 P W All gene names: K07C5.5; 5K836; CE06115; WBGene00010628; WP:CE06115 WormBase description: hydrolase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

K07F5.1 Aff_K07F5.1 P W All gene names: msp-81; K07F5.1; 4K600; NM_069358; WBGene00003467 WormBase description: msp-81 encodes a member of the major sperm protein family. WormBase CDS description: major sperm protein
K07F5.2 Aff_K07F5.2 P W All gene names: msp-10; K07F5.2; 4K603; CE03853; NM_069359; WBGene00003425; WP:CE03853 WormBase description: msp-10 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

K08B12.2 Aff_K08B12.2 P W All gene names: K08B12.2; 5G731; CE29814; CE30817; WBGene00019521; WP:CE29814; WP:CE30817
K08B5.1 Aff_K08B5.1 P W All gene names: K08B5.1; CE35740; WBGene00019518; WP:CE35740; XR175
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K08C7.3 Aff_K08C7.3 P W All gene names: egf-3; epi-1; lgx-3; K08C7.3; 4L443; CE06136; CE25049; NM_069569; WBGene00001328; WP:CE06136; WP:CE25049 WormBase description: epi-1 encodes a laminin alpha chain that affects oogenesis due to its affect on gonad development, and also affects cell migrations, axon extension and GABAergic defasciculation, morphology of the VD and DD motor neurons, body morphology, locomotion, gonad sheath epithelialization, body muscle structure, and germ cell proliferation. WormBase CDS description: laminin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

K08D10.8 Aff_K08D10.8 P W All gene names: K08D10.8; K08D10.8.1; K08D10.8.2; 4E929; CE07360; WBGene00019531; WP:CE07360 WormBase description: K08D10.7 encodes a homolog of human scramblase (PLSCR1; OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis; a close paralog of K08D10.8 is K08D10.7, and other paralogs include F46A8.9, F46A8.10, and Y50E8A.9> Exposure of phosphatidylserine on the surface of apoptotic cells occurs because of a phospholipid scramblase and inactivation of an aminophospolipid translocase that would normally keep the PS on the interior of the cell; by virtue of its similarity to mammalian scramblase, K08D10.8 may promote clearage of apoptotic cells by phagocytosis.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

K08F4.8 Aff_K08F4.8 P W All gene names: msp-38; K08F4.8; 4K908; CE06156; NM_069448; WBGene00003434; WP:CE06156 WormBase description: msp-38 encodes a member of the major sperm protein family; msp-38 has a C. briggsae homolog as predicted by the Wobble Bulk Aware Bulk Aligner (WABA). WormBase CDS description: major sperm protein MSP-38
K09C6.6 Aff_K09C6.6 P W All gene names: K09C6.6; 5B323; CE11998; WBGene00019560; WP:CE11998
K09F6.8 Aff_K09F6.8 P W All gene names: K09F6.8; 2C584; CE12038; WBGene00019591; WP:CE12038
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K10D2.7 Aff_K10D2.7 P W All gene names: K10D2.7; 3G285; CE02019; WBGene00019633; WP:CE02019
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

K11D2.3 Aff_K11D2.3 P W All gene names: unc-101; K11D2.3; K11D2.3.1; K11D2.3.2; 1N105; CE28050; NM_060773; WBGene00006829; WP:CE28050 WormBase description: unc-101 encodes an adaptin orthologous to the mu1-I subunit of adaptor protein complex 1 (AP-1) that is involved in motility, egg-laying, negative regulation of LET-23 / EGF-receptor signalling, and localization of the neuronal receptors ODR-10 and GLR-1; it is broadly expressed.
K11G9.1 Aff_K11G9.1 P W All gene names: K11G9.1; 5H159; CE07374; WBGene00019652; WP:CE07374 WormBase description: esterase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S3  genes pass                                
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

K12H6.11 Aff_K12H6.11 P W All gene names: K12H6.11; 2D109; CE20014; WBGene00019690; WP:CE20014
K12H6.7 Aff_K12H6.7 P W All gene names: K12H6.7; 2D126; CE20010; WBGene00019687; WP:CE20010
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M01D1.1 Aff_M01D1.1 P W All gene names: str-148; M01D1.1; 2B337; CE21071; NM_061497; WBGene00006195; WP:CE21071 WormBase description: 7TM chemoreceptor, str family
M01D1.3 Aff_M01D1.3 P W All gene names: M01D1.3; 2B314; CE23871; WBGene00019700; WP:CE23871
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M01D1.9 Aff_M01D1.9 P W All gene names: fbxb-40; M01D1.9; 2B340; CE12258; WBGene00019704; WP:CE12258 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
M01D7.1 Aff_M01D7.1 P W All gene names: M01D7.1; 1C330; CE12260; WBGene00019706; WP:CE12260 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

M05D6.7 Aff_M05D6.7 P W All gene names: gbh-2; M05D6.7; 2I777; CE35896; NM_063392; WBGene00001523; WP:CE35896 WormBase description: gbh-2 encodes an ortholog of human gamma butyrobetaine hydroxilase 2 involved in carnitine biosynthesis; RNA interference of gbh-2 results in malformation of the gonad and accumulation of fat in the pseudocoelomic cavity and in intestinal cells; the GBH-2-GFP fusion protein is predominantly expressed in intestinal cells from early embryogenesis. WormBase CDS description: gamma-butyrobetaine,2-oxoglutarate dioxygenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M110.4 Aff_M110.4 P W All gene names: ifg-1; M110.4; 2I511; CE02277; CE35745; WBGene00002066; WP:CE02277; WP:CE35745 WormBase description: ifg-1 encodes, by alternative splicing, two orthologs of the translational initiation factor eIF4 (eIF-4) gamma.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

M151.8 Aff_M151.6 P W All gene names: fbxb-33; M151.8; CE38623; WBGene00044314; WP:CE38623
M153.1 Aff_M153.1 P W All gene names: M153.1; CE03511; WBGene00010924; WP:CE03511; XM767 WormBase description: pyrroline-5-carboxylate reductase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster B,                                
                                              Romagnolo et al 2002  Fig3b Metabolism, Wang et al 2003                            
                                               S3  genes pass one-way ANOVA, Wang et al 2003  S4                                 
                                              genes pass two-wayANOVA P0, Wang et al 2003  S4                                    
                                              LateList                                                                           

M163.3 Aff_M163.3 P W All gene names: his-24; M163.3; CE12450; HH1; NM_078009; WBGene00001898; WP:CE12450; XP109 WormBase description: The his-24 gene encodes a histone H1 isoform (H1.1) that is essential for chromatin silencing and germline development. WormBase CDS description: histone H1
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              A, Reinke et al 2004, list of genes in cluster order,                              
                                              Reinke et al 2004, IVb male soma enriched genes                                    

R03E9.2 Aff_R03E9.2 P W All gene names: R03E9.2; CE04785; WBGene00019843; WP:CE04785; XH350
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R04B5.5 Aff_R04B5.5 P W All gene names: R04B5.5; 5K569; CE06215; WBGene00011003; WP:CE06215 WormBase description: sorbitol dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

R06C7.3 Aff_R06C7.3 P W All gene names: CeCRMP/DHP-1; dhp-1; R06C7.3; R06C7.3.1; R06C7.3.2; 1H816; CE30293; NM_170899; WBGene00000963; WP:CE30293 WormBase description: The R06C7.3 gene encodes a homolog of the human gene DPYS, which when mutated leads to dihydropyrimidinuria (OMIM:222748). WormBase CDS description: dihydropyrimidinase
R07C3.11 Aff_R07C3.11 P W All gene names: R07C3.11; 2B196; CE12542; WBGene00019927; WP:CE12542
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R07C3.7 Aff_R07C3.7 P W All gene names: R07C3.7; 2B207; CE12534; WBGene00019923; WP:CE12534
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R07C3.9 Aff_R07C3.9 P W All gene names: R07C3.9; 2B203; CE12538; WBGene00019925; WP:CE12538
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R07H5.4 Aff_R07H5.4 P W All gene names: sdz-27; R07H5.4; 4L953; CE12556; WBGene00011124; WP:CE12556
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, herm soma enriched genes, Reinke et                             
                                              al 2004, fem3 enriched genes, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S6 removed genes                              
                                              of contamination                                                                   

R07H5.9 Aff_R07H5.9 P W All gene names: R07H5.9; 4L975; CE39953; WBGene00011129; WP:CE39953
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R10D12.1 Aff_R10D12.1 P W All gene names: R10D12.1; 5O414; CE12672; WBGene00011185; WP:CE12672 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Shen et al 2005  T1 hif-1 depend                                   
                                              hypoxia, Wang et al 2003  S3  genes pass one-way ANOVA,                            
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R12E2.6 Aff_R12E2.6 P W All gene names: R12E2.6; 1E720; CE18138; WBGene00020032; WP:CE18138
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R12H7.2 Aff_R12H7.2 P W All gene names: asp-4; R12H7.2; CE03567; NM_077790; WBGene00000217; WP:CE03567; XN838 WormBase description: asp-4 encodes an aspartyl protease homolog that is required, in parallel with ASP-3 but downstream of CLP-1 and TRA-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf). WormBase CDS description: aspartyl protease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

R12H7.3 Aff_R12H7.3 P W All gene names: skr-19; R12H7.3; CE03568; NM_077792; WBGene00004825; WP:CE03568; XN842 WormBase description: The skr-19 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-19(RNAi) animals are at least superficially normal. WormBase CDS description: RNA polymerase II elongation factor like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R144.4 Aff_R144.4 P W All gene names: R144.4; 3G109; CE34587; CE34588; WBGene00020094; WP:CE34587; WP:CE34588
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T01C4.2 Aff_T01C4.2 P W All gene names: odr-2; T01C4.2; 5H593; CE28348; CE28349; CE28350; WBGene00003849; WP:CE28348; WP:CE28349; WP:CE28350 WormBase description: odr-2 encodes three isoforms of a predicted membrane-associated protein related to the Ly-6 (leukocyte antigen-6) family of GPI (glycosylated phosphatidylinositol)-linked signaling proteins; ODR-2 activity is required for proper functioning of the AWC olfactory neurons and thus for chemotaxis in response to AWC-sensed odorants; ODR-2 is expressed at high levels in sensory neurons, motor neurons, and interneurons, where it appears to be enriched in axons.
T01C8.5 Aff_T01C8.5 P W All gene names: T01C8.5; CE07462; WBGene00020146; WP:CE07462; XR406 WormBase description: aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

T02C1.1 Aff_T02C1.1 P W All gene names: T02C1.1; 3K337; CE00312; WBGene00011365; WP:CE00312 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T02G6.6 Aff_T02G6.6 P W All gene names: T02G6.6; 1M413; CE18177; WBGene00011389; WP:CE18177
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T03D8.6 Aff_T03D8.6 P W All gene names: T03D8.6; 5V288; CE37271; WBGene00011393; WP:CE37271 WormBase description: Gamma-glutamyltranspeptidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T04B8.3 Aff_T04B8.3 P W All gene names: T04B8.3; 2A919; CE39176; WBGene00020205; WP:CE39176
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

T05B11.1 Aff_T05B11.1 P W All gene names: T05B11.1; 5I231; CE07464; WBGene00020245; WP:CE07464 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B                                                                          

T05E7.1 Aff_T05E7.1 P W All gene names: T05E7.1; 1G781; CE13231; WBGene00020258; WP:CE13231
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, herm soma enriched                               
                                              genes, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

T05H10.3 Aff_T05H10.3 P W All gene names: T05H10.3; 2I340; CE01640; WBGene00011508; WP:CE01640
T06C10.4 Aff_T06C10.4 P W All gene names: flp-10; T06C10.4; T06C10.4.1; T06C10.4.2; 4I635; CE04902; NM_068905; WBGene00001453; WP:CE04902
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T07D1.4 Aff_T07D1.4 P W All gene names: fox-1; T07D1.4; T07D1.4.1; T07D1.4.2; CE25105; NM_076045; WBGene00001484; WP:CE25105; XD66 WormBase description: fox-1 encodes an RNA-binding protein of the RNA recognition motif (RRM) superfamily of ribonucleic acid binding proteins; during C. elegans development, FOX-1 functions redundantly with other numerator elements to effect proper dosage compensation in the early embryo; in influencing dosage compensation, FOX-1 likely acts via post-transcriptional regulation of xol-1 mRNA levels; in addition to its role in dosage compensation, fox-1 activity is also required for normal male mating behavior; Western analysis and lacZ reporter constructs indicate that FOX-1 is expressed throughout the life cycle, beginning at the 18-20-cell stage of embryogenesis and continuing on through larval stages and into adult hermaphrodites and males; while early embryonic expression of fox-1 is ubiquitous, postembryonic expression is limited to a subset of head and tail neurons. WormBase CDS description: RNA-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

T07E3.4 Aff_T07E3.4 P W All gene names: T07E3.4; T07E3.4a.1; T07E3.4a.2; T07E3.4b.1; T07E3.4b.2; 3H989; CE01385; CE32717; WBGene00020315; WP:CE01385; WP:CE32717 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

T08B1.6 Aff_T08B1.6 P W All gene names: T08B1.6; 5C451; CE27444; WBGene00020343; WP:CE27444 WormBase description: long-chain fatty-acid CoA ligase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Metabolism, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

T08B2.5 Aff_T08B2.6 P W All gene names: T08B2.5; 1G795; CE13429; CE25984; CE26949; CE30298; CE33171; CE33172; CE38728; WBGene00020346; WP:CE13429; WP:CE25984; WP:CE26949; WP:CE30298; WP:CE33171; WP:CE33172; WP:CE38728
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T08E11.6 Aff_T08E11.6 P W All gene names: fbxb-10; T08E11.6; 2C104; CE19573; WBGene00020362; WP:CE19573 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

T09B4.5 Aff_T09B4.5 P W All gene names: T09B4.5; T09B4.5a.1; T09B4.5a.2; 1G733; CE13465; CE33175; WBGene00020379; WP:CE13465; WP:CE33175
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T10C6.12 Aff_T10C6.12 P W All gene names: his-3; T10C6.12; 5Q521; CE04501; NM_074631; WBGene00001877; WP:CE04501 WormBase description: his-3 encodes an H2A histone; by homology, HIS-3 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-3 is a replication-dependent histone locus that resides in the HIS1 cluster on chromosome V. WormBase CDS description: histone H2A
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T10C6.14 Aff_T10C6.14 P W All gene names: his-1; T10C6.14; 5Q523; CE03252; NM_074633; WBGene00001875; WP:CE03252 WormBase description: his-1 encodes an H4 histone; his-1 is contained within the histone gene cluster HIS1; transcript analysis suggests that it encodes the major class of H4 transcripts. WormBase CDS description: histone H4
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

T12G3.1 Aff_T12G3.1 P W All gene names: T12G3.1; T12G3.1.1; T12G3.1.2; 4M801; CE37554; WBGene00011737; WP:CE37554 WormBase description: Drosphila REF (2)P like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

T14G8.2 Aff_T14G8.2 P W All gene names: T14G8.2; CE03658; WBGene00011770; WP:CE03658; XN477 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
T15B7.5 Aff_T15B7.5 P W All gene names: col-141; T15B7.5; 5H311; CE13656; NM_072334; WBGene00000714; WP:CE13656 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T16A1.8 Aff_T16A1.8 P W All gene names: fbxb-37; T16A1.8; 2C376; CE13716; WBGene00020537; WP:CE13716 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

T17A3.4 Aff_T17A3.4 P W All gene names: fbxb-82; T17A3.4; 3A756; CE19582; WBGene00020542; WP:CE19582 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, list of                             
                                              genes in cluster E                                                                 

T19C3.5 Aff_T19C3.5 P W All gene names: T19C3.5; 3B242; CE29347; WBGene00020563; WP:CE29347
T19C4.1 Aff_T19C4.1 P W All gene names: T19C4.1; 5L629; CE06465; WBGene00011838; WP:CE06465
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S3  genes pass one-way ANOVA, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

T19H12.1 Aff_T19H12.1 P W All gene names: ugt-9; T19H12.1; 5F375; CE13752; WBGene00020587; WP:CE13752 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, list of genes in cluster C, Reinke                              
                                              et al 2004, mixed sperm soma, Reinke et al 2004, GO                                
                                              categories, Romagnolo et al 2002 Fig5 genes in let-60                              
                                              timecour, Romagnolo et al 2002  Fig3b Detoxification,                              
                                              Wang et al 2003  S4 TransientList, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

T20B12.6 Aff_T20B12.6 P W All gene names: mml-1; T20B12.6; 3I460; CE30186; CE32727; MYC; WBGene00003378; WP:CE30186; WP:CE32727; mio
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T20D4.19 Aff_T20D4.19 P W All gene names: T20D4.19; 5D900; CE13814; WBGene00020624; WP:CE13814
T20G5.4 Aff_T20G5.4 P W All gene names: T20G5.4; 3L303; CE28844; WBGene00011868; WP:CE28844 WormBase description: Putative membrane protein
T20G5.7 Aff_T20G5.7 P W All gene names: dod-6; T20G5.7; 3L287; CE00587; NM_066856; WBGene00011869; WP:CE00587
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T22A3.8 Aff_C43H8.3 P W All gene names: lam-3; T22A3.8; 1L197; CE31067; NM_060374; WBGene00002248; WP:CE31067; lama1/2 WormBase description: lam-3 is orthologous to human LAMININ ALPHA-2 (LAMA2; OMIM:156225), which when mutated leads to merosin-deficient congenital muscular dystrophy. WormBase CDS description: laminin B
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

T22F7.5 Aff_T22F7.3 P W All gene names: T22F7.5; 3B132; CE30305; WBGene00020704; WP:CE30305
T22H2.6 Aff_T22H2.6 P W All gene names: T22H2.6; 1M295; CE24004; CE24005; WBGene00011936; WP:CE24004; WP:CE24005 WormBase description: granulin precursor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T22H6.2 Aff_T22H6.2 P W All gene names: T22H6.2; T22H6.2a.1; T22H6.2a.2; CE03697; CE26824; WBGene00011938; WP:CE03697; WP:CE26824; XN405 WormBase description: 1-pyroline-5-carboxylate synthetase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

T24A6.17 Aff_T24A6.17 P W All gene names: T24A6.17; 5E42; WBGene00020754
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

T24B8.6 Aff_T24B8.6 P W All gene names: hlh-3; T24B8.6; 2J377; CE03714; NM_063537; WBGene00001950; WP:CE03714 WormBase description: hlh-3 encodes a basic helix-loop-helix transcription factor homologous to Drosophila Achaete-scute; in vitro, HLH-3 can heterodimerize, and bind an E-box-containing probe, with HLH-2, the C. elegans E/daughterless ortholog with which it is coexpressed in the nuclei of embryonic neuronal precursors. WormBase CDS description: helix-loop-helix protein
T24C12.3 Aff_T24C12.3 P W All gene names: T24C12.3; CE31247; WBGene00020765; WP:CE31247; XC816
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, herm soma                                 
                                              enriched genes                                                                     

T25D10.4 Aff_T25D10.4 P W All gene names: T25D10.4; 2G700; CE02061; WBGene00020801; WP:CE02061
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

T25G12.8 Aff_T25G12.8 P W All gene names: T25G12.8; CE07545; WBGene00020814; WP:CE07545; XR852
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 TransientList,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T26E3.5 Aff_T26E3.5 P W All gene names: T26E3.5; 1N254; CE14192; WBGene00012038; WP:CE14192 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

T26E3.8 Aff_T26E3.8 P W All gene names: T26E3.8; 1N250; CE21207; WBGene00012041; WP:CE21207
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T26H2.1 Aff_T26H2.1 P W All gene names: fbxb-1; T26H2.1; 5T711; CE16487; WBGene00012063; WP:CE16487 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
T26H2.3 Aff_T26H2.3 P W All gene names: fbxb-2; T26H2.3; 5T706; CE16489; WBGene00012065; WP:CE16489 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T26H2.4 Aff_T26H2.4 P W All gene names: fbxb-116; T26H2.4; 5T705; CE16490; WBGene00012066; WP:CE16490 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T26H2.7 Aff_T26H2.7 P W All gene names: T26H2.7; 5T697; CE16492; WBGene00012068; WP:CE16492
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T27A10.3 Aff_T27A10.3 P W All gene names: ckc-1; T27A10.3; T27A10.3a.1; T27A10.3a.2; CE07553; CE33710; WBGene00000515; WP:CE07553; WP:CE33710; XE193 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Early genes,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T27C4.4 Aff_T27C4.4 P W All gene names: egr-1; T27C4.4; 5E189; CE21211; CE21212; CE33330; CE33331; NM_071630; NM_071631; NM_182323; NM_182324; WBGene00001219; WP:CE21211; WP:CE21212; WP:CE33330; WP:CE33331 WormBase description: egr-1 encodes a homolog of human MTA1, part of an ATP-dependent complex with nucleosome remodelling and histone deacetylation activities that may promote tumor metastasis; in conjunction with its paralog egl-27, egr-1 is required for proper organization in all parts of the embryo, and for the embryonic expression of hlh-8.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

T27E4.1 Aff_T27E4.1 P W All gene names: T27E4.1; 5J573; CE29357; WBGene00020861; WP:CE29357
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T27E4.8 Aff_T27E4.2 P W All gene names: hsp-16.1; hsp-16; T27E4.8; 5J568; CE14249; NM_072953; WBGene00002015; WP:CE14249 WormBase description: hsp-16.1 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.11; an hsp-16.1 reporter fusion, expressed broadly but most strongly in muscle and hypodermis, is induced solely in response to heat shock or other environmental stresses; expression is detectable in somatic tissues in post-gastrulation embryos, all larval stages, and in adults; HSP-16.1 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein HSP16-1
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Romagnolo et al 2002  Fig2a heat                                
                                              shock, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T27E4.9 Aff_T27E4.3 P W All gene names: hsp-16.49; T27E4.9; 5J570; NM_072955; WBGene00002020 WormBase description: hsp-16.49 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.48; HSP-16.49 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein HSP16-48
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T28F2.4 Aff_T28F2.4 P W All gene names: T28F2.4; 1E200; CE28497; CE37050; WBGene00020902; WP:CE28497; WP:CE37050
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S4 Early genes,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

W02D3.7 Aff_W02D3.7 P W All gene names: lbp-5; W02D3.7; W02D3.7.1; W02D3.7.2; 1H308; CE14430; NM_059527; WBGene00002257; WP:CE14430 WormBase description: lbp-5 encodes a predicted intracellular fatty acid binding protein (iFABP) that is most similar to the vertebrate muscle and heart FABPs; by homology, LBP-5 is predicted to function as an intracellular transporter for small hydrophobic molecules such as lipids and steroid hormones; loss of lbp-5 activity via large-scale RNAi screens indicates that, in C. elegans, LBP-5 is required for movement. WormBase CDS description: fatty acid-binding protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

W02H5.8 Aff_W02H5_1932.J P W All gene names: W02H5.8; W02H5.A; W02H5_1932.A; 5D126; CE21240; WBGene00020962; WP:CE21240
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

W03C9.6 Aff_W03C9.6 P W All gene names: W03C9.6; W03C9.6.1; W03C9.6.2; 2M251; CE32948; WBGene00012222; WP:CE32948
W04A8.4 Aff_W04A8.4 P W All gene names: W04A8.4; 1O434; CE16538; WBGene00012239; WP:CE16538
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

W04A8.5 Aff_W04A8.5 P W All gene names: W04A8.5; 1O442; CE16539; WBGene00012240; WP:CE16539 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

W05E10.3 Aff_W05E10.3 P W All gene names: ceh-32; W05E10.3; W05E10.3.1; W05E10.3.2; 5M182; CE29364; NM_073557; WBGene00000453; WP:CE29364 WormBase description: ceh-32 encodes a Six/sine oculis-type homeodomain protein most closely related to the Six3/6 subfamily that contains Drosophila OPTIX and human SIX3 (OMIM:603714, which when mutated leads to holoprosencephaly 2); CEH-32 appears to be essential for development and required for proper head morphogenesis; during embryogenesis, CEH-32 is expressed in hypodermal and neuronal precursors, and at later stages, in the descendants of these cells and in gonadal sheath cells; in some hypodermal cells, ceh-32 is a direct transcriptional target of VAB-3, a PAX-6 ortholog sufficient to induce ceh-32 expression in some cell types and able to bind the ceh-32 promoter in vitro. WormBase CDS description: homeobox protein (so subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

W05H12.2 Aff_W05H12.2 P W All gene names: W05H12.2; 1O0; CE14660; WBGene00012290; WP:CE14660
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W05H9.3 Aff_W05H9.3 P W All gene names: W05H9.3; W05H9.3.1; W05H9.3.2; CE05038; WBGene00021050; WP:CE05038; XG873
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

W06D4.5 Aff_T06D10.C P W All gene names: tag-157; W06D4.5; 1J640; CE16547; WBGene00006503; WP:CE16547 WormBase description: PhoX homologous domain, present in p47phox and p40phox.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

W08G11.3 Aff_W08G11.3 P W All gene names: W08G11.3; 5Q849; CE39423; CE39424; WBGene00012347; WP:CE39423; WP:CE39424
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

W09D6.4 Aff_W09D6.4 P W All gene names: W09D6.4; 3M169; CE19018; WBGene00012357; WP:CE19018
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

W10C8.2 Aff_W03D8.4, Aff_W10C8.2 P W All gene names: pop-1; sys-2; W10C8.2; 1D392; CE26031; NM_058652; WBGene00004077; WP:CE26031 WormBase description: pop-1 encodes an HMG box-containing protein that is the sole C. elegans member of the TCF/LEF family of transcription factors; in C. elegans, POP-1 functions as a component of the canonical and noncanonical Wnt signaling pathways that are required for cell migrations and binary cell fate decisions associated with asymmetric cell division, respectively; in yeast two-hybrid assays, the POP-1 N-terminal beta-catenin binding domain interacts with BAR-1/beta-catenin as well as with the more divergent beta-catenin, SYS-1; when coexpressed with SYS-1, POP-1 is able to activate transcription from a promoter with TCF binding sites; during development, maternally provided POP-1 is first detected in the nuclei of maturing oocytes and then in nearly all cells of the early embryo; in sister blastomeres in the early embryo, POP-1 is detected at lower levels in posterior blastomeres, such as E and P3, than in corresponding anterior blastomeres, MS and C; in later developmental stages, POP-1 is detected in a subset of tissues including hypodermal seam cells, gonadal precursors, and the developing vulva; in the vulva, POP-1 also exhibits an asymmetric staining pattern, with sister cells showing high or low levels of POP-1 depending upon their orientation along the anterior/posterior axis of the vulva.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E                                                                          

Y102A5C.12 Aff_Y102A5C.10 P W All gene names: Y102A5C.12; 5R422; CE20384; WBGene00013618; WP:CE20384 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Y106G6D.2 Aff_Y106G6D.2 P W All gene names: Y106G6D.2; 1K687; CE19300; WBGene00013699; WP:CE19300
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y106G6H.4 Aff_Y106G6H.4 P W All gene names: Y106G6H.4; 1L14; CE20414; WBGene00013717; WP:CE20414
Y38F2AL.1 Aff_Y38F2A_5743.J P W All gene names: Y38F2AL.1; 4D91; CE39822; WBGene00021415; WP:CE39822 WormBase description: Y38F2AL.1 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; Y38F2AL.1 is worm-specific, with obvious homologs only in C. elegans; Y38F2AL.1 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

Y38H6C.11 Aff_Y38H6C.11 P W All gene names: Y38H6C.11; 5U995; CE19105; WBGene00012624; WP:CE19105 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes                                                                              

Y38H6C.7 Aff_Y38H6C.7 P W All gene names: Y38H6C.7; 5U985; CE19101; WBGene00012620; WP:CE19101
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress                                                                        

Y39A3CL.5 Aff_Y39A3C_85.A P W All gene names: clp-4; Y39A3CL.5; Y39A3CL.5b.1; Y39A3CL.5b.2; 3C898; CE33219; CE33220; NM_065059; NM_181914; WBGene00000545; WP:CE33219; WP:CE33220 WormBase description: clp-4 encodes a large calpain subunit that is homologous to Drosophila CalpainB and the mammalian muscle-specific Calpain 3 proteins (OMIM:114240, mutations are associated with limb-girdle muscular dystrophy); by homology, CLP-4 is predicted to function as a nonlysosomal, calcium-dependent, cysteine protease that is involved in intracellular proteolysis and peptidolysis; however, as loss of clp-4 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of CLP-4 in C. elegans development and/or behavior is not yet known.
Y39B6A.6 Aff_B0413.A P W All gene names: tsp-13; Y39B6A.6; 5T631; CE21670; NM_171602; WBGene00006639; WP:CE21670
Y40B10B.2 Aff_Y40B10B.A P W All gene names: srj-15; Y40B10B.2; Y40B10B.A; 5C440; CE21799; NM_071138; WBGene00005603; WP:CE21799 WormBase description: 7TM chemoreceptor, srj family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y40B1B.3 Aff_Y40B1B.3 P W All gene names: fbxb-66; tag-228; Y40B1B.3; 1O14; CE20237; WBGene00012737; WBGene00044066; WP:CE20237
Y46H3A.1 Aff_Y32G9B_366.D P W All gene names: srt-42; Y46H3A.1; 5C285; CE35804; CE38004; WBGene00021599; WP:CE35804; WP:CE38004 WormBase description: 7TM chemoreceptor, srt family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y46H3A.2 Aff_Y46H3A.E P W All gene names: hsp-16.41; HSP16-41; Y46H3A.2; Y46H3A.E; 5C283; CE22003; NM_071107; WBGene00002018; WP:CE22003 WormBase description: hsp-16.41 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; an hsp-16.41 reporter fusion, expressed broadly but strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; expression is detectable in somatic tissues in post-gastrulation embryos, all larval stages, and in adults; HSP-16.41 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Link et al 2003  T3 Abeta highly                                    
                                              induced, Link et al 2003  T2 Abeta induced, Reinke et                              
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y46H3A.3 Aff_Y46H3A.D P W All gene names: hsp-16.2; Y46H3A.3; Y46H3A.D; 5C282; CE22002; NM_071106; WBGene00002016; WP:CE22002 WormBase description: hsp-16.2 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; hsp-16.2 expression, strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; HSP-16.2 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease; HSP-16.2 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, daf-2 differentially                             
                                              expressed , Link et al 2003  T3 Abeta highly induced,                              
                                              Link et al 2003  T2 Abeta induced, Murphy et al 2003                               
                                              Fig2 Class1 elongate lifespan, Romagnolo et al 2002                                
                                              Fig2a heat shock, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

Y46H3C.6 Aff_Y46H3C_14.B P W All gene names: Y46H3C.6; 5C176; CE35806; WBGene00021606; WP:CE35806
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y47H9B.2 Aff_Y47H9B.1 P W All gene names: Y47H9B.2; 1M339; CE34123; WBGene00012946; WP:CE34123
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

Y48G1C.6 Aff_Y48G1B_55.E P W All gene names: Y48G1C.6; 1A558; CE22175; WBGene00021679; WP:CE22175
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y51B9A.3 Aff_Y51B9A.3 P W All gene names: Y51B9A.3; 2J696; CE19213; WBGene00013085; WP:CE19213
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt males vs glp4 male enriched , Reinke et al                             
                                              2004, mixed sperm soma, Reinke et al 2004, wt herm vs                              
                                              wt herm enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster D, Reinke et al 2004, fem3 enriched genes                               

Y53C10A.5 Aff_Y53C10A.B P W All gene names: Y53C10A.5; 1M593; CE22373; WBGene00013136; WP:CE22373
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y55B1AR.1 Aff_Y55B1A_120.D P W All gene names: lec-6; Y55B1AR.1; Y55B1AR.1.1; Y55B1AR.1.2; 3B218; CE22493; NM_064814; WBGene00002269; WP:CE22493 WormBase description: lec-6 encodes a 'proto' type galectin (beta-galactosyl-binding lectin) containing a single carbohydrate recognition domain; by homology, LEC-6 may play roles in cell adhesion and aggregation, proliferation, or programmed cell death, but as loss of lec-6 activity via large-scale RNAi screens does not result in obvious abnormalities, the precise role of LEC-6 in C. elegans development and/or behavior is not yet known; in vitro, LEC-6 can interact with several types of blood group precursor oligosaccharides and gangliosides.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, IVb male soma enriched genes                                                 

Y55D5A.1 Aff_Y55D5A_392.F P W All gene names: Y55D5A.1; 3E77; CE27294; CE34131; WBGene00021915; WP:CE27294; WP:CE34131
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y55D5A.6 Aff_Y55D5A_391.A P W All gene names: Y55D5A.6; 3E132; CE22512; WBGene00021919; WP:CE22512
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at                                                                 

Y57A10C.1 Aff_Y57A10C.1 P W All gene names: Y57A10C.1; 2M702; CE22632; WBGene00013280; WP:CE22632
Y57G11C.8 Aff_Y57G11C.8 P W All gene names: Y57G11C.8; 4P547; CE39974; WBGene00013306; WP:CE39974
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

Y57G7A.2 Aff_Y57G7A.2 P W All gene names: Y57G7A.2; 2B587; CE19631; WBGene00021966; WP:CE19631
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y61A9LA.3 Aff_Y61A9LA_71.B P W All gene names: Y61A9LA.3; 5F63; CE27412; CE31122; CE36964; WBGene00022015; WP:CE27412; WP:CE31122; WP:CE36964
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

Y63D3A.3 Aff_Y63D3A.3 P W All gene names: fbxb-101; Y63D3A.3; 1O681; CE25528; WBGene00013404; WP:CE25528
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y69A2AR.29 Aff_Y69A2A_7278.I P W All gene names: ngn-1; Y69A2AR.29; 4D392; CE26560; NM_067835; WBGene00003595; WP:CE26560 WormBase description: ngn-1 encodes a member of the neurogenein family that is required for axonal guidance and connectivity of a subset of neurons, and also affects locomotion.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

Y69H2.6 Aff_Y69H2.I P W All gene names: ubc-19; Y69H2.6; Y69H2.I; 5T168; CE22824; NM_075246; WBGene00006714; WP:CE22824 WormBase description: ubc-19 encodes a predicted conjgating enzyme (UBCs/E2s) of the ubiquitin-conjugation system with a potentially low effect on embryonic viability, based on RNAi analysis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y71A12B.3 Aff_Y71A12B.M P W All gene names: Y71A12B.3; 1O485; WBGene00013501
Y71F9AL.7 Aff_Y71F9A_294.G P W All gene names: Y71F9AL.7; 1D457; CE22861; WBGene00022112; WP:CE22861
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y71H2AM.13 Aff_Y71H2_390.F P W All gene names: Y71H2AM.13; 3D824; CE22953; WBGene00022178; WP:CE22953
Y71H2AM.17 Aff_Y71H2_375.B P W All gene names: Y71H2AM.17; 3D854; CE39070; WBGene00022182; WP:CE39070
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y76B12C.8 Aff_Y76B12C_67.D P W All gene names: Y76B12C.8; Y76B12C.8.1; Y76B12C.8.2; 4C743; CE23063; WBGene00022302; WP:CE23063
Y82E9BL.2 Aff_Y119D3_465.D P W All gene names: Y82E9BL.2; 3C442; CE23418; WBGene00022319; WP:CE23418
Y82E9BL.3 Aff_Y119D3_465.E P W All gene names: Y82E9BL.3; 3C440; CE23419; WBGene00022320; WP:CE23419
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y82E9BL.5 Aff_Y119D3_465.F P W All gene names: Y82E9BL.5; 3C436; CE27547; WBGene00022322; WP:CE27547
Y82E9BR.17 Aff_Y119D3_448.B P W All gene names: Y82E9BR.17; 3C536; CE27337; CE34434; WBGene00022349; WP:CE27337; WP:CE34434
Y9C9A.13 Aff_Y9C9A_54.B P W All gene names: Y9C9A.13; 4F722; CE25647; WBGene00021180; WP:CE25647
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC204.9 Aff_ZC204.9 P W All gene names: fbxb-20; ZC204.9; 2B938; CE15100; WBGene00022559; WP:CE15100 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC455.5 Aff_ZC455.5 P W All gene names: ugt-4; ZC455.5; 5N274; CE06594; WBGene00013905; WP:CE06594 WormBase description: UDP-glucuronysltransferase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

ZK1058.6 Aff_ZK1058.6 P W All gene names: nit-1; ZK1058.6; 3F11; CE01106; WBGene00014206; WP:CE01106 WormBase description: Nitrilase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

ZK1251.6 Aff_ZK1251.6 P W All gene names: msp-76; ZK1251.6; 4K453; NM_069321; WBGene00003463 WormBase description: msp-76 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein (MSP1)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK1320.10 Aff_ZK1320.10 P W All gene names: nlp-11; ZK1320.10; ZK1320.10.1; ZK1320.10.2; 2J978; CE01699; NM_063690; WBGene00003749; WP:CE01699
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK185.1 Aff_ZK185.1 P W All gene names: ZK185.1; 4F315; CE17310; WBGene00022681; WP:CE17310
ZK430.5 Aff_ZK430.5 P W All gene names: ZK430.5; 2E703; CE05081; WBGene00022741; WP:CE05081
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

ZK525.2 Aff_ZK525.2 P W All gene names: aqp-11; ZK525.2; 3O765; CE33909; NM_067420; WBGene00000179; WP:CE33909
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK637.4 Aff_ZK637.4 P W All gene names: ZK637.4; 3J983; CE00435; WBGene00014024; WP:CE00435
ZK792.7 Aff_ZK792.7 P W All gene names: ZK792.7; 4M461; CE03828; WBGene00014079; WP:CE03828 WormBase description: Yeast CC1 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

ZK896.9 Aff_ZK896.9 P W All gene names: ZK896.9; 4N619; CE15465; WBGene00014139; WP:CE15465 WormBase description: CMP-sialic acid transporter
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

ZK899.6 Aff_ZK899.6 P W All gene names: ZK899.6; CE01123; WBGene00014144; WP:CE01123; XK81
ZK930.6 Aff_ZK930.6 P W All gene names: ZK930.6; 2M173; CE06676; WBGene00014156; WP:CE06676
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004,                                
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated