Hill et al 2000, developmentally modulated cluster, 93 genes

Gene list file name:Hill2000_T1_cluster1-6.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,6)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

Aff_BIOB5 Aff_BIOB5 P W
AFF_F07H5.4 Aff_F07H5.4 P W
AFF_K09F5.3 Aff_K09F5.3 P W
AFF_ZK1025.5 Aff_ZK1025.5 P W
B0024.1 Aff_B0024.1 P W All gene names: col-149; B0024.1; 5K772; CE05146; NM_073245; WBGene00000722; WP:CE05146 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

B0035.13 Aff_B0035.13 P W All gene names: B0035.13; 4M70; CE05168; WBGene00007112; WP:CE05168 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0491.2 Aff_B0491.2 P W All gene names: rol-5; sqt-1; B0491.2; B0491.2.1; B0491.2.2; 2L626; CE02104; NM_064020; Rol; WBGene00005016; WP:CE02104 WormBase description: sqt-1 encodes a cuticle collagen; during larval and adult development, sqt-1 activity is required, likely redundantly, for normal cuticle, and hence organismal, morphology; sqt-1 mRNA abundance oscillates during larval development, peaking at one point during each larval stage and peaking again in adults; sqt-1 transcripts are also detected in animals at the L1-L2d molt; in the temporally distinct waves of collagen gene expression that occur during larval development, sqt-1 mRNA appears to be synthesized during the second, or intermediate, stage, just very slightly earlier than sqt-3/col-1 and dpy-13; SQT-1 protein is detected in cuticle extracts from L2, L3, and L4 larvae, and from adults, but is not detected in extracts from L1 or dauer larvae; sqt-1 interacts genetically with a number of genes also required for normal cuticle and organismal morphology, e.g., rol-6 and lon-3, which also encode cuticular collagens. WormBase CDS description: cuticle collagen SQT-1
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C01B12.1 Aff_C01B12.1 P W All gene names: sqt-2; C01B12.1; 2A315; CE07789; NM_061234; WBGene00005017; WP:CE07789 WormBase description: Uncloned locus that affects alae formation and body morphology such that mutants exhibit a slightly dumpy phenotype and the bodies of mutants are helically twisted. WormBase CDS description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

C01C4.1 Aff_C01C4.1 P W All gene names: nlp-1; C01C4.1; CE29554; NM_076239; WBGene00003739; WP:CE29554; XE347 WormBase description: nlp-1 encodes a predicted neuropeptide-like protein of the MSFamide family with similarity to Aplysia californica (sea hare) buccalin, a neuropeptide that regulates acetylcholine-induced muscle contraction; NLP-1 is expressed in the phasmid PHB tail sensory neuron, lateral neurons, head neurons, and the intestine; the precise role of NLP-1 in nervous system function and development is not yet known. WormBase CDS description: A. californica buccalin precursor (weak)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

C01G10.6 Aff_C01G10.6 P W All gene names: C01G10.6; 5P569; CE07815; WBGene00007233; WP:CE07815
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C09H5.2 Aff_C09H5.2 P W All gene names: C09H5.2; 5I559; CE24797; CE32578; WBGene00015660; WP:CE24797; WP:CE32578 WormBase description: ATPase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C24A1.1 Aff_C24A1.1 P W All gene names: flp-24; C24A1.1; C24A1.1.1; C24A1.1.2; 3B343; CE38488; WBGene00016028; WP:CE38488
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes                                                                              

C27C7.4 Aff_ZK1025.10 P W All gene names: nhr-73; C27C7.4; 1M22; CE18535; NM_060520; WBGene00003663; WP:CE18535 WormBase description: nhr-73 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain; expression studies using GFP fusions indicate that nhr-73 is expressed exclusively in lateral seam cells; expression of nhr-73 is seen in early embryonic lateral hypodermal cells and continues to persist in the daughter cell that continues to divide and is lost in the daughter cell that differentiates; nhr-73 expression is diminished by knocking down genes (via RNA interference) that are involved in seam cell development like elt-5 and ceh-16/engrailed. WormBase CDS description: Zinc finger, C4 type (two domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C31H2.2 Aff_C31H2.2 P W All gene names: dpy-8; C31H2.2; CE04130; NM_076472; WBGene00001070; WP:CE04130; XF768 WormBase description: dpy-8 encodes a collagen with a nematode-specific N-terminal domain that is required for normal body morphology and (perhaps) for a normal embryonic cell division rate; dpy-8 interacts genetically with emb-5 and glp-1. WormBase CDS description: collagen alpha (weak)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster B,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

C36H8.3 Aff_C36H8.3 P W All gene names: flp-9; C36H8.3; 4N520; CE39568; NM_070035; WBGene00001452; WP:CE39568 WormBase description: flp-9 encodes a predicted FMRFamide-like peptide neurotransmitter that inhibits action potentials in the pharyngeal muscle when applied to the pharynx of dissected worms and inhibits movement when injected into A. suum; expressed at highest levels prior to adulthood.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, IVb male soma enriched genes, Wang                              
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

C44B11.3 Aff_C44B11.3 P W All gene names: Alpha-tubulin; mec-12; tba-3; C44B11.3; C44B11.3.1; C44B11.3.2; 3E222; CE24843; NM_065262; WBGene00003175; WP:CE24843 WormBase description: mec-12 encodes a novel C. elegans alpha-tubulin that is unique amongst C. elegans alpha tubulins in that it may be subject to post-translational acetylation; MEC-12 is required for normal mechanosensory response to gentle touch, and specifically for formation of the 15-protofilament microtubule bundle present in the touch receptor neurons; mec-12 interacts genetically with mec-5, which encodes a unique C. elegans collagen secreted by the hypodermis; MEC-12 is highly expressed in the touch neurons as well as in several other neurons that do not contains the microfilament bundle, such as the ventral cord motorneurons. WormBase CDS description: alpha tubulin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt herm                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C45B11.3 Aff_C45B11.3 P W All gene names: dhs-18; C45B11.3; C45B11.3.1; C45B11.3.2; 5L526; CE05427; NM_073411; WBGene00000981; WP:CE05427 WormBase description: alcohol dehydrogenase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

F01D4.4 Aff_F01D4.4 P W All gene names: egl-21; F01D4.4; F01D4.4.1; F01D4.4.2; F01D4.4.3; F01D4.4.4; F01D4.4.5; F01D4.4.6; 4L244; CE09156; NM_069534; WBGene00001189; WP:CE09156 WormBase description: Uncloned locus that affects egg laying. WormBase CDS description: zinc carboxypeptidase
F07C4.7 Aff_F07C4.7 P W All gene names: grsp-4; F07C4.7; 5I105; CE09206; WBGene00017201; WP:CE09206
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F11C3.3 Aff_F11C3.3 P W All gene names: myo-4; unc-54; F11C3.3; F11C3.3.1; F11C3.3.2; F11C3.3.3; F11C3.3.4; F11C3.3.5; 1P454; CE09349; NM_061195; WBGene00006789; WP:CE09349 WormBase description: unc-54 encodes a muscle myosin class II heavy chain (MHC B); UNC-54 is the major myosin heavy chain expressed in C. elegans and is required for locomotion and egg-laying; in vivo and in vitro, UNC-54 interacts with ITR-1, an IP3 receptor, and this interaction may provide a link between calcium signaling and the muscle cytoskeleton; UNC-54 is a thick filament component that is expressed in multiple muscle cell classes including body wall, intestinal, anal depressor, and sphincter muscles as well as sex-specific muscles that develop postembryonically. WormBase CDS description: myosin heavy chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Roy et al 2002  S2                                           
                                              positivecontrol L1 muscle, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

F15B9.1 Aff_F15B9.1 P W All gene names: far-3; F15B9.1; 5N476; CE09406; NM_073850; WBGene00001387; WP:CE09406 WormBase description: O.volvulus antigen peptide like
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F17C11.2 Aff_F17C11.2 P W All gene names: F17C11.2; F17C11.2.1; F17C11.2.2; 5L427; CE05649; WBGene00008914; WP:CE05649
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F19H8.2 Aff_F19H8.2 P W All gene names: F19H8.2; 2O888; CE15871; WBGene00008963; WP:CE15871
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

F20A1.1 Aff_F20A1.1 P W All gene names: F20A1.1; 5H533; CE07091; WBGene00017613; WP:CE07091
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

F21F3.1 Aff_F21F3.1 P W All gene names: F21F3.1; 1F479; CE32870; WBGene00017671; WP:CE32870
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F21F8.4 Aff_F21F8.4 P W All gene names: F21F8.4; F21F8.4.1; F21F8.4.2; 5I751; CE09540; WBGene00017678; WP:CE09540 WormBase description: protease
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen                                                                      

F23B2.5 Aff_F23B2.5 P W All gene names: flp-1; F23B2.5; 4J909; CE09585; CE32045; CE32046; NM_069191; NM_182277; NM_182278; WBGene00001444; WP:CE09585; WP:CE32045; WP:CE32046 WormBase description: flp-1 can encode up to seven distinct, yet highly similar, FMRFamide-related peptides (FaRPs), small neuromodulatory peptides that are characterized by a C-terminal Arg-Phe-amide motif; in C. elegans, FLP-1 peptides are required for regulation of several behaviors, including well-coordinated, sinusoidal movement and the transition between active and inactive states of egg-laying; receptors for the FLP-1 peptides have not yet been identified, but genetic studies indicate that FLP-1 peptides may act through G-protein coupled receptors; flp-1 mRNAs are detected at all developmental stages, and a FLP-1 translational reporter fusion detects expression in the anteriorly positioned neurons AVK, AVA, AVE, RIG, RMG, AIY, AIA, and M5
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F32A5.3 Aff_F32A5.3 P W All gene names: F32A5.3; 2H525; CE01273; WBGene00017969; WP:CE01273 WormBase description: Serine carboxypeptidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, GO categories, Reinke et                             
                                              al 2004, herm soma enriched genes, Wang et al 2003  S4                             
                                              TransientList, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

F35B12.9 Aff_F35B12.1 P W All gene names: F35B12.9; 5M83; CE31931; WBGene00009388; WP:CE31931
F36H12.1 Aff_F36H12.1 P W All gene names: F36H12.1; 4G59; CE09973; WBGene00018117; WP:CE09973
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F37B4.2 Aff_F37B4.2 P W All gene names: ifc-1; F37B4.2; F37B4.2.1; F37B4.2.2; 5D361; CE27378; Cel IF C1; CelIF c1; NM_071382; WBGene00002055; WP:CE27378 WormBase description: ifc-1 encodes a nonessential intermediate filament protein; IFC-1 is predicted to function as a structural component of the cytoskeleton; IFC-1 has no function in RNAi assays. WormBase CDS description: intermediate filament protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F37H8.5 Aff_F37H8.5 P W All gene names: F37H8.5; CE15997; WBGene00009514; WP:CE15997
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F40F8.4 Aff_F40F8.4 P W All gene names: F40F8.4; 2L430; CE05844; WBGene00009577; WP:CE05844
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen                                                                                

F41C3.5 Aff_F41C3.5 P W All gene names: F41C3.5; F41C3.5.1; F41C3.5.2; 2F29; CE02733; WBGene00018271; WP:CE02733 WormBase description: Serine carboxypeptidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              Reinke et al 2004, GO categories, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 Climbing, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

F41E7.4 Aff_F41E7.4 P W All gene names: F41E7.4; CE03304; WBGene00009620; WP:CE03304; XK921
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F41E7.5 Aff_F41E7.5 P W All gene names: F41E7.5; CE03305; WBGene00009621; WP:CE03305; XK923 WormBase description: collagen-like repeats
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F43H9.4 Aff_F43H9.4 P W All gene names: F43H9.4; 5I507; CE27381; WBGene00018400; WP:CE27381
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Murphy et al 2003  Fig2 Class1                                   
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F46F2.3 Aff_F46F2.3 P W All gene names: F46F2.3; CE05880; WBGene00009787; WP:CE05880; XP878
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Lund et al 2002  Fig1 aging-regulated genes,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

F47B10.2 Aff_F47B10.2 P W All gene names: F47B10.2; CE03352; WBGene00009813; WP:CE03352; XL512 WormBase description: F47B10.2 is orthologous to the human gene HISTIDASE (HAL; OMIM:235800), which when mutated leads to disease. WormBase CDS description: histidine ammonia-lyase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F52C6.12 Aff_F52C6.12 P W All gene names: F52C6.12; F52C6.12.1; F52C6.12.2; 2C220; CE35975; WBGene00018669; WP:CE35975
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F53F4.13 Aff_F53F4.13 P W All gene names: F53F4.13; 5O92; CE10978; WBGene00009995; WP:CE10978
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

F54C9.1 Aff_F54C9.1 P W All gene names: iff-2; F54C9.1; F54C9.1.1; F54C9.1.2; F54C9.1.3; 2I850; CE02249; NM_063406; WBGene00002065; WP:CE02249 WormBase description: initiation factor 5A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B                               

F54F3.4 Aff_F54F3.4 P W All gene names: F54F3.4; 5N403; CE19894; WBGene00010063; WP:CE19894 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F57H12.7 Aff_F57H12.7 P W All gene names: mec-17; F57H12.7; 4I750; CE17128; NM_068936; WBGene00003178; WP:CE17128 WormBase description: mec-17 encodes a protein that has no clearly recognizable motifs yet shares a domain of similarity with an additional C. elegans protein as well as proteins from Drosophila, mouse, and human; MEC-17 activity is required for maintaining the differentiated state of the touch receptors, and hence the animal's touch sensitivity, during later stages of larval development; mec-17 is expressed solely in the touch receptor cells from late embryogenesis through adulthood, and this expression is dependent upon the MEC-3 LIM homeodomain transcription factor; in turn, as MEC-17 is necessary for maintaining differentiated touch receptors, its activity is required for continued expression of MEC-3 and the MEC-7 beta-tubulin.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, Zhang et al 2002, T1 mec-3 dependent                            
                                              genes                                                                              

F58A6.1 Aff_F58A6.1 P W All gene names: F58A6.1; 2F429; CE04675; WBGene00019022; WP:CE04675
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F58B4.5 Aff_F58B4.5 P W All gene names: F58B4.5; 5L413; CE06015; WBGene00010238; WP:CE06015
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F58H1.7 Aff_F58H1.7 P W All gene names: F58H1.7; 5M444; CE11412; CE20895; WBGene00010290; WP:CE11412; WP:CE20895 WormBase description: low-density lipoprotein receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

F59A2.3 Aff_F59A2.3 P W All gene names: F59A2.3; F59A2.3.1; F59A2.3.2; 3E487; CE17940; WBGene00010303; WP:CE17940 WormBase description: Splicing factor-associated 32K chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

F59A7.2 Aff_F59A7.2 P W All gene names: F59A7.2; 5C494; CE11438; WBGene00019090; WP:CE11438
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M01D7.5 Aff_M01D7.5 P W All gene names: nlp-12; M01D7.5; 1C317; CE12268; NM_058507; WBGene00003750; WP:CE12268 WormBase description: nlp-12 encodes two predicted neuropeptide-like proteins; nlp-12 is part of a LQFamide neuropeptide family that has members in at least one other nematode species; nlp-12 is expressed in one tail neuron; as loss of nlp-12 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-12-encoded peptides in development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes                                                                     

R06F6.11 Aff_R06F6.11 P W All gene names: tag-209; R06F6.11; 2L77; CE01617; WBGene00011072; WP:CE01617
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R06F6.9 Aff_R06F6.9 P W All gene names: acbp-2; ech-4; R06F6.9; 2L111; CE01625; NM_063929; WBGene00001153; WP:CE01625 WormBase description: enoyl CoA hydratase/isomerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Metabolism,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

R07H5.2 Aff_R07H5.2 P W All gene names: cpt-2; R07H5.2; R07H5.2.1; R07H5.2.2; 4L947; CE18907; WBGene00011122; WP:CE18907 WormBase description: R07H5.2 is orthologous to the human gene CARNITINE PALMITOYLTRANSFERASE II (CPT2; OMIM:600650), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R09B5.8 Aff_R09B5.8 P W All gene names: cnc-3; R09B5.8; 5B927; CE12632; NM_071016; WBGene00000557; WP:CE12632
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

R102.2 Aff_R102.2 P W All gene names: R102.2; 4L453; CE23912; WBGene00011289; WP:CE23912
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes                                                                              

R13A5.10 Aff_R13A5.10 P W All gene names: R13A5.10; 3I668; CE01371; WBGene00020052; WP:CE01371
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, list of genes in cluster D, Reinke                              
                                              et al 2004, fem3 enriched genes, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

R57.2 Aff_R57.2 P W All gene names: R57.2; CE35753; WBGene00020083; WP:CE35753; XA917
T01B7.7 Aff_T01B7.7 P W All gene names: rol-6; T01B7.7; 2J23; CE03591; NM_063457; WBGene00004397; WP:CE03591 WormBase description: The rol-6 gene encodes a cuticle collagen related to human collagen alpha 1 (III) chain precursor (OMIM:120180), and is required for normal cuticular morphology; ROL-6 interacts with SQT-1, a closely related cuticle collagen, and is expressed at all stages from L2 to adult with transcripts detected at each of the molts preceding these stages. WormBase CDS description: cuticle collagen ROL-6
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

T03D8.3 Aff_T03D8.3 P W All gene names: sbt-1; T03D8.3; 5V298; CE18921; WBGene00011392; WP:CE18921 WormBase description: neuroendocrine protein 7B2
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              neuronal, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster A,                            
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S5 genes common to feeding ANOVA, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA                                              

T04C12.3 Aff_T04C12.3 P W All gene names: T04C12.3; T04C12.3.1; T04C12.3.2; 5L544; CE13146; WBGene00011428; WP:CE13146
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, IVb male soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T05A8.3 Aff_T05A8.3 P W All gene names: T05A8.3; 2D6; CE18199; WBGene00020229; WP:CE18199
T05D4.1 Aff_T05D4.1 P W All gene names: T05D4.1; T05D4.1.1; T05D4.1.2; 3O652; CE16341; WBGene00011474; WP:CE16341 WormBase description: T05D4.1 is orthologous to the human gene ALDOLASE A, FRUCTOSE-BISPHOSPHATE (ALDOA; OMIM:103850), which when mutated leads to aldolase A deficiency. WormBase CDS description: Fructose-bisphosphate aldolase class-I
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Reinke et al 2004, GO categories, Reinke                             
                                              et al 2004, IVb male soma enriched genes, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

T07E3.6 Aff_T07E3.6 P W All gene names: T07E3.6; 3I0; CE30165; CE30166; WBGene00020317; WP:CE30165; WP:CE30166
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T10B10.1 Aff_T10B10.1 P W All gene names: col-41; T10B10.1; CE06399; NM_078121; WBGene00000618; WP:CE06399; XP794 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T10G3.3 Aff_T10G3.3 P W All gene names: T10G3.3; 5N968; CE37988; WBGene00011694; WP:CE37988
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

T13B5.1 Aff_T13B5.1 P W All gene names: snf-3; T13B5.1; T13B5.1.1; T13B5.1.2; 2B387; CE30176; NM_061509; WBGene00004902; WP:CE30176 WormBase description: sodium/chloride-dependent GABA transporter
T19C3.3 Aff_T19C3.3 P W All gene names: T19C3.3; 3B228; CE30183; WBGene00020561; WP:CE30183
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 LateList, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

T21D12.2 Aff_T21D12.2 P W All gene names: col-100; dpy-9; T21D12.2; 4B12; CE35021; NM_067488; WBGene00001071; WP:CE35021 WormBase description: dpy-9 encodes a cuticular collagen family member with similarity to human collagen alpha 5, type IV, and affects body length. WormBase CDS description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

T22E5.5 Aff_T22E5.5 P W All gene names: mup-2; tnt-1; T22E5.5; T22E5.5.1; T22E5.5.2; CE04994; NM_076675; WBGene00003495; WP:CE04994; XH28 WormBase description: mup-2 encodes the muscle contractile protein troponin T ( TnT ) homologous to vertebrate and invertebrate TnT and contains an invertebrate- specific COOH -terminal tail; mup-2 affects embryonic body wall muscle cell contraction, sarcomere organization, cell positioning, regulated muscle contraction in larval and adult body wall muscle, epidermal morphogenesis, and is required for proper function of the hermaphrodite nonstriated oviduct myoepithelial sheath, proper growth, and fertility. WormBase CDS description: troponin T-like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C                                                                          

T23B12.8 Aff_T23B12.8 P W All gene names: T23B12.8; 5I952; CE14040; WBGene00020722; WP:CE14040
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T24F1.5 Aff_T24F1.5 P W All gene names: T24F1.5; 2L608; CE02365; WBGene00011997; WP:CE02365
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

W10G6.3 Aff_W10G6.3 P W All gene names: ifa-2; mua-6; W10G6.3; W10G6.3.1; W10G6.3.2; CE18354; Cel IF A2; CelIF a2; NM_078247; WBGene00003485; WP:CE18354; XQ878 WormBase description: mua-6 encodes an essential intermediate filament protein (MUA-6/IFA-2) that is coexpressed with the essential IF protein IFB-1; MUA-6 is required for hypodermal integrity and for lasting attachment of muscles to the body wall; MUA-6 is also required for normal positioning of excretory canals and muscles; MUA-6 forms heteropolymeric intermediate filaments in vitro with an equimolar mixture of IFB-1; mua-6 is transcribed from L1 larval to adult stages; MUA-6 resides in main body hypodermal desmosomes, but not in seam cells. WormBase CDS description: intermediate filament protein
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, IVb male soma enriched                               
                                              genes, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S3  genes pass one-way ANOVA, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

Y37D8A.2 Aff_Y37D8A.2 P W All gene names: Y37D8A.2; Y37D8A.2.1; Y37D8A.2.2; 3N913; CE20207; WBGene00012544; WP:CE20207
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y39A1A.9 Aff_Y39A1A.9 P W All gene names: Y39A1A.9; 3L720; CE38117; WBGene00012648; WP:CE38117
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Reinke et al 2004, IVb male soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

Y39E4A.3 Aff_Y39E4A.3 P W All gene names: Y39E4A.3; Y39E4A.3a.1; Y39E4A.3a.2; Y39E4A.3a.3; 3O58; CE33866; CE38987; WBGene00012713; WP:CE33866; WP:CE38987 WormBase description: Y39E4A.3 is orthologous to the human gene MAPLE SYRUP URINE DISEASE, TYPE IA (MSUD, TYPE IA; E1-alpha subunit of branched-chain keto acid dehydrogenase; OMIM:248600), which when mutated leads to maple syrup urine disease; Y39E4A.3 protein is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S4 Climbing,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

Y41E3.10 Aff_Y41E3.10 P W All gene names: Y41E3.10; 4P803; CE37568; WBGene00012768; WP:CE37568 WormBase description: Elongation factor 1 (beta/delta chain)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

Y41E3.2 Aff_Y41E3.2 P W All gene names: col-134; dpy-4; Y41E3.2; 4P750; CE18370; NM_070407; WBGene00001066; WP:CE18370 WormBase description: dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. WormBase CDS description: CUTICLE COLLAGEN 1
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

Y44A6D.2 Aff_Y44A6D.2 P W All gene names: Y44A6D.2; 5V259; CE19160; WBGene00012853; WP:CE19160
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen                                                                                

Y51A2D.11 Aff_Y51A2D.11 P W All gene names: Y51A2D.11; 5T40; CE19207; WBGene00013079; WP:CE19207 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, GO categories, Reinke et al                              
                                              2004, IVb male soma enriched genes, ViswanathanM et al                             
                                              2005  S2 daf-16 Resveratrol                                                        

Y51A2D.9 Aff_Y51A2D.9 P W All gene names: Y51A2D.9; 5T36; CE19205; WBGene00013077; WP:CE19205 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y54G2A.45 Aff_Y94H6A_1.D P W All gene names: Y54G2A.45; CE38897; WBGene00044488; WP:CE38897
Y57A10C.6 Aff_Y57A10C.6 P W All gene names: P-44; Y57A10C.6; 2M714; CE18418; WBGene00013284; WP:CE18418 WormBase description: 3-keto-acyl-CoA thiolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y69H2.3 Aff_Y69H2.G P W All gene names: Y69H2.3; Y69H2.3a.1; Y69H2.3a.2; Y69H2.3d.1; Y69H2.3d.2; 5T136; CE32543; CE32544; CE32545; CE32546; WBGene00013481; WP:CE32543; WP:CE32544; WP:CE32545; WP:CE32546
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 daf-16                                 
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y73F4A.2 Aff_Y73F4A.2 P W All gene names: Y73F4A.2; 4J806; CE20368; WBGene00013515; WP:CE20368
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

Y73F8A.6 Aff_Y73F8A.F P W All gene names: ccg-1; Y73F8A.6; 4Q36; CE25600; NM_070441; WBGene00000370; WP:CE25600
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

ZC412.3 Aff_ZC412.3 P W All gene names: ZC412.3; ZC412.3.1; ZC412.3.2; ZC412.3.3; 5P350; CE15215; WBGene00013884; WP:CE15215
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, IVb male soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              Dauer Enriched                                                                     

ZK1025.2 Aff_ZK1025.2 P W All gene names: ZK1025.2; 1M42; CE19329; WBGene00014182; WP:CE19329
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

ZK1025.3 Aff_ZK1025.3 P W All gene names: ZK1025.3; 1M52; CE23491; WBGene00014183; WP:CE23491
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C                               

ZK1248.16 Aff_ZK1248.16 P W All gene names: lec-5; ZK1248.16; 2G130; CE29634; NM_062762; WBGene00002268; WP:CE29634
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, mixed sperm soma, ViswanathanM et al 2005                              
                                              S2 daf-16 Resveratrol, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

ZK154.3 Aff_ZK154.3 P W All gene names: mec-7; ZK154.3; CE15257; NM_076912; WBGene00003171; WP:CE15257; XI394 WormBase description: mec-7 encodes a beta-tubulin required for touch sensitivity along the body wall, and for normal levels of locomotor activity; it is strongly expressed in six touch receptor neurons, with weak expression in FLP, PVD, and BDU cells. WormBase CDS description: beta tubulin
                                              
Member of lists (Publications lists):
                                              Roy et al 2002  S3 muscle genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK525.1 Aff_ZK525.1 P W All gene names: flp-15; ZK525.1; 3O754; CE16731; NM_067419; WBGene00001458; WP:CE16731 WormBase description: flp-15 encodes two FMRFamide-related short peptide neurotransmitter; the precise roles for these peptides in C. elegans neurotransmission are not yet known.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK673.7 Aff_ZK673.7 P W All gene names: tnc-2; ZK673.7; 2K757; CE01719; NM_063850; WBGene00006583; WP:CE01719 WormBase description: tnc-2 encodes pharyngeal muscle troponin C, the calcium-binding component of the troponin complex of actin thin filaments; TNC-2 is essential for postembryonic development, and by homology, likely functions to regulate pharyngeal muscle contraction in response to changes in intracellular calcium; TNC-2 is expressed exclusively in pharyngeal muscle. WormBase CDS description: troponin C
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

ZK822.4 Aff_ZK822.4 P W All gene names: ZK822.4; 4M691; CE27357; WBGene00014091; WP:CE27357
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated