Hill et al 2000, developmentally modulated cluster, 131 genes

Gene list file name:Hill2000_T1_cluster1-1.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,1)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_C24D10.8 Aff_C24D10.8 P W
AFF_R13H4.2 Aff_R13H4.2 P W
AFF_Y4C6A.C Aff_Y4C6A.C P W
C04F12.7 Aff_C04F12.7 P W All gene names: C04F12.7; 1K272; CE19680; WBGene00007301; WP:CE19680
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C04G2.9 Aff_C04G2.9 P W All gene names: C04G2.9; 4K879; CE05217; WBGene00007308; WP:CE05217
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C05D9.2 Aff_C05D9.2 P W All gene names: lmp-2; C05D9.2; CE07928; WBGene00015471; WP:CE07928; XB745
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C07B5.5 Aff_C07B5.5 P W All gene names: nuc-1; C07B5.5; CE00895; NM_077203; WBGene00003828; WP:CE00895; XK159 WormBase description: The nuc-1 gene encodes a DNase II homolog similar to mammalian and Drosophila DNaseII enzymes and is required for DNA degradation during apoptosis as well as for degradation of dietary DNA during normal feeding; during apoptosis, NUC-1 functions in apoptotic cells at an intermediate stage of DNA degradation, after the killing step, but prior to cell-corpse engulfment.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , McCarroll et al 2004                                    
                                              SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C09G5.5 Aff_C09G5.5 P W All gene names: col-80; C09G5.5; 2K997; CE01485; NM_063909; WBGene00000656; WP:CE01485 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C10G11.9 Aff_C10G11.9 P W All gene names: C10G11.9; 1G850; CE08088; WBGene00015689; WP:CE08088
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C14F11.4 Aff_C14F11.4 P W All gene names: C14F11.4; CE37197; CE37198; WBGene00015780; WP:CE37197; WP:CE37198; XG850
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C15A11.5 Aff_C15A11.5 P W All gene names: col-7; C15A11.5; 1H979; CE08173; NM_059689; WBGene00000596; WP:CE08173; col7 WormBase description: col-7 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed during the L2-to-dauer molt and the L4-to-adult molt. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C24D10.7 Aff_C24D10.7 P W All gene names: C24D10.7; 4F928; CE16879; WBGene00016058; WP:CE16879
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt males vs glp4 male                            
                                              enriched , Reinke et al 2004, spermatogenesis enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster D,                              
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, shared sperm                                                                 

C24F3.6 Aff_C24F3.6 P W All gene names: col-124; C24F3.6; 4K981; CE18523; NM_069466; WBGene00000698; WP:CE18523 WormBase description: CUTICLE COLLAGEN 1
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

C24G6.6 Aff_C24G6.6 P W All gene names: C24G6.6; C24G6.6.1; C24G6.6.2; C24G6.6.3; C24G6.6.4; 5F990; CE17462; WBGene00016061; WP:CE17462
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, wt herm vs wt male                            
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C32H11.9 Aff_C32H11.9 P W All gene names: C32H11.9; 4N698; CE19716; WBGene00007872; WP:CE19716
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Murphy et al 2003  Fig2 Class2 shorten                                
                                              lifespan                                                                           

C33F10.9 Aff_C33F10.9 P W All gene names: msp-40; C33F10.9; 2F115; NM_062464; WBGene00003435 WormBase description: msp-40 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

C34D4.3 Aff_C34D4.3 P W All gene names: C34D4.3; 4H919; CE06924; WBGene00016399; WP:CE06924
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster D, Reinke et al 2004, shared sperm,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C34F11.4 Aff_C34F11.4 P W All gene names: msp-50; C34F11.4; 2F491; NM_062571; WBGene00003443 WormBase description: msp-50 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C34F11.6 Aff_C34F11.6 P W All gene names: msp-49; C34F11.6; 2F485; CE04166; NM_062569; WBGene00003442; WP:CE04166 WormBase description: msp-49 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C34F6.2 Aff_C34F6.2 P W All gene names: col-178; C34F6.2; CE15671; NM_077468; WBGene00000751; WP:CE15671; XL819 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

C35D10.11 Aff_C35D10.11 P W All gene names: C35D10.11; 3F958; WBGene00016447
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004, GO                             
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              D, Reinke et al 2004, shared sperm, ViswanathanM et al                             
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C36A4.9 Aff_C36A4.9 P W All gene names: C36A4.9; C36A4.9a.1; C36A4.9a.2; C36A4.9a.3; 3E955; CE03076; CE37209; WBGene00007969; WP:CE03076; WP:CE37209 WormBase description: acetyl-coenzyme A synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Shen et al 2005  T1 hif-1 depend hypoxia,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C40H5.1 Aff_C40H5.1 P W All gene names: nspa-9; C40H5.1; CE08649; WBGene00043187; WP:CE08649
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C48E7.7 Aff_C48E7.7 P W All gene names: C48E7.7; 1G811; CE08822; WBGene00016752; WP:CE08822
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004,                                
                                              list of genes in cluster D, Reinke et al 2004, shared                              
                                              sperm, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C50B6.7 Aff_C50B6.7 P W All gene names: C50B6.7; 5N804; CE08876; WBGene00008220; WP:CE08876 WormBase description: amylase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, GO categories,                                
                                              Reinke et al 2004, herm soma enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster B, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

C50F4.1 Aff_C50F4.1 P W All gene names: C50F4.1; 5K9; CE26799; WBGene00008229; WP:CE26799
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, herm soma enriched genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C52E4.1 Aff_C52E4.1 P W All gene names: cpr-1; gcp-1; C52E4.1; 5M457; CE31896; CPROT/1; NM_073601; WBGene00000781; WP:CE31896 WormBase description: cpr-1 encodes a cysteine protease of the cathepsin B-like cysteine protease family; cpr-1 appears to be required for embryogenesis; cpr-1 is specifically expressed in the gut of all stages except the embryo and around developing embryos in the gonad; expression of cpr-1 is regulated by three promoter GATA motifs. WormBase CDS description: cathepsin-like cysteine protease
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Murphy et al 2003  Fig2 Class1 elongate                             
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

D2007.1 Aff_D2007.1 P W All gene names: D2007.1; 3J247; CE00126; WBGene00017041; WP:CE00126
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

D2096.3 Aff_D2096.3 P W All gene names: D2096.3; D2096.3.1; D2096.3.2; D2096.3.3; 4J139; CE33610; WBGene00017071; WP:CE33610
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, GO categories, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated                                                   

E03H12.10 Aff_E03H12.10 P W All gene names: ssp-9; E03H12.10; E03H12.10.1; E03H12.10.2; 4F758; CE09149; NM_068296; WBGene00006038; WP:CE09149
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004,                                
                                              list of genes in cluster D, Reinke et al 2004, shared                              
                                              sperm, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F08C6.2 Aff_F08C6.2 P W All gene names: F08C6.2; CCT; CE30937; CE39144; WBGene00017241; WP:CE30937; WP:CE39144; XI199 WormBase description: F08C6.2 encodes a lipid-activated CTP:phosphocholine cytidylyltransferase (CCT), with CCT activity in vitro; recombinant F08C6.2 enzyme is most activated by a 1:1 mixture of phosphatidylcholine:oleate vesicles; a inhibitory 21-residue segment (residues 246-266) is critical for specific activation of F08C6.2 by lipids, since deletion or mutation of this segment causes F08C6.2 to be constitutively active without its normal lipid substrate; F08C6.2 has no obvious function in mass RNAi assays.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F08H9.2 Aff_F08H9.2 P W All gene names: F08H9.2; 5O941; CE09266; WBGene00008590; WP:CE09266
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F08H9.7 Aff_F08H9.7 P W All gene names: clec-56; F08H9.7; 5O955; CE37968; WBGene00008595; WP:CE37968 WormBase description: C-type lectin domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F08H9.8 Aff_F08H9.8 P W All gene names: clec-54; F08H9.8; 5O957; CE35853; WBGene00008596; WP:CE35853 WormBase description: C-type lectin domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F09C12.7 Aff_F09C12.7 P W All gene names: msp-74; msp-74ps; F09C12.7; 2F404; CE02603; NM_062548; WBGene00003462; WP:CE02603 WormBase description: msp-74 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

F09C8.1 Aff_F09C8.1 P W All gene names: F09C8.1; CE31470; WBGene00008621; WP:CE31470; XQ774 WormBase description: phospholipase precursor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F11G11.8 Aff_F11G11.8 P W All gene names: F11G11.8; 2F150; CE02882; WBGene00017386; WP:CE02882
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F13A7.1 Aff_F13A7.1 P W All gene names: F13A7.1; 5Q856; CE15808; WBGene00008724; WP:CE15808
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, shared sperm,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F17E9.5 Aff_F17E9.5 P W All gene names: F17E9.5; 4J111; CE07072; WBGene00017542; WP:CE07072
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F21F3.3 Aff_F21F3.3 P W All gene names: F21F3.3; 1F471; CE09533; WBGene00017673; WP:CE09533 WormBase description: protein-S isoprenylsysteine O-methyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm, Wang et al 2003  S3  genes pass one-way                              
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

F22A3.6 Aff_F22A3.6 P W All gene names: F22A3.6; CE04442; CE34002; WBGene00017691; WP:CE04442; WP:CE34002; XH152
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F22D6.10 Aff_F22D6.10 P W All gene names: col-60; F22D6.10; 1H683; CE05691; NM_059612; WBGene00000636; WP:CE05691 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Kwon et al 2004  T1 late-repression                                   
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F25E2.4 Aff_F25E2.4 P W All gene names: ifd-2; F25E2.4; CE07133; IF D2; NM_075759; WBGene00002058; WP:CE07133; XB434 WormBase description: ifd-2 encodes a nonessential intermediate filament protein; IFD-2 is predicted to function as a structural component of the cytoskeleton; IFD-2 has no obvious function in RNAi assays. WormBase CDS description: cytoplasmic intermediate filament
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes                             

F26G1.7 Aff_F26G1.7 P W All gene names: msp-3; F26G1.7; 2F76; CE02699; NM_062457; WBGene00003424; WP:CE02699 WormBase description: msp-3 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-3 is similar in nucleotide sequence to the msp genes from the nematode Onchocerca volvulus; the msp gene family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSP proteins assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: Major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

F27C1.1 Aff_F27C1.1 P W All gene names: F27C1.1; 1G3; CE09714; WBGene00017851; WP:CE09714
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004,                                
                                              list of genes in cluster D, Reinke et al 2004, shared                              
                                              sperm, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F27C8.4 Aff_F27C8.4 P W All gene names: spp-18; F27C8.4; 4K359; CE03269; NM_069303; WBGene00005003; WP:CE03269
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Kwon et al 2004  T1 late-repression                                   
                                              Ethanol-respon, Reinke et al 2004, herm soma enriched                              
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F28G4.1 Aff_F28G4.1 P W All gene names: cyp-37B1; F28G4.1; 5Q759; CE15919; NM_074708; WBGene00009226; WP:CE15919 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, ReichertK et al 2005 T1 xenobiotic induced P450,                             
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order,                                        
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

F32H5.1 Aff_F32H5.1 P W All gene names: F32H5.1; 5N836; CE09885; WBGene00009347; WP:CE09885 WormBase description: cathepsin B like cysteine protease
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

F38A3.1 Aff_F38A3.1 P W All gene names: col-81; F38A3.1; 2L302; CE02213; NM_063960; WBGene00000657; WP:CE02213 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F38B6.4 Aff_F38B6.4 P W All gene names: F38B6.4; CE28304; WBGene00018174; WP:CE28304; XH297 WormBase description: GARS/AIRS/GART
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, herm soma enriched genes,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F40F12.7 Aff_F40F12.7 P W All gene names: F40F12.7; F40F12.7.1; F40F12.7.2; 3L5; CE00570; WBGene00009595; WP:CE00570
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F41F3.4 Aff_F41F3.4 P W All gene names: col-139; F41F3.4; 5F132; CE07218; NM_071851; WBGene00000712; WP:CE07218 WormBase description: cuticle collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

F43G6.11 Aff_F43G6.4 P W All gene names: F43G6.11; 2M91; CE31698; CE31699; NM_171044; NM_171045; WBGene00009663; WP:CE31698; WP:CE31699
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F44D12.5 Aff_F44D12.5 P W All gene names: F44D12.5; 4K795; WBGene00009682
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F46B6.8 Aff_F46B6.8 P W All gene names: F46B6.8; 5K273; CE05874; WBGene00009773; WP:CE05874 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, herm soma enriched genes,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F46H5.7 Aff_F46H5.7 P W All gene names: F46H5.7; F46H5.7a.1; F46H5.7a.2; F46H5.7c.1; F46H5.7c.2; CE04593; CE31170; CE34026; WBGene00018522; WP:CE04593; WP:CE31170; WP:CE34026; XH858
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F47B8.11 Aff_F47B8.11 P W All gene names: sss-2; F47B8.11; 5O827; CE10652; NM_074156; WBGene00006057; WP:CE10652
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004,                                
                                              list of genes in cluster D, Reinke et al 2004, shared                              
                                              sperm, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F47G4.7 Aff_F47G4.7 P W All gene names: smd-1; F47G4.7; F47G4.7.1; F47G4.7.2; 1O640; CE18705; NM_061047; WBGene00004875; WP:CE18705; samdc
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F48D6.4 Aff_F48D6.4 P W All gene names: F48D6.4; CE07261; CE28400; CE29328; WBGene00018602; WP:CE07261; WP:CE28400; WP:CE29328; XE866
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F52B11.4 Aff_F52B11.4 P W All gene names: col-133; F52B11.4; 4O860; CE18724; NM_070299; WBGene00000707; WP:CE18724 WormBase description: CUTICLE COLLAGEN 34
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F53A9.8 Aff_F53A9.8 P W All gene names: F53A9.8; CE02768; WBGene00018731; WP:CE02768; XJ336
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F53B6.4 Aff_F53B6.4 P W All gene names: F53B6.4; 1J524; CE10896; WBGene00009959; WP:CE10896
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, shared sperm,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F54D5.3 Aff_F54D5.3 P W All gene names: F54D5.3; F54D5.3.1; F54D5.3.2; 2L863; CE28033; WBGene00010049; WP:CE28033
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F55C5.1 Aff_F55C5.1 P W All gene names: F55C5.1; 5M744; CE11150; WBGene00010091; WP:CE11150
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster D                                                                          

F58A6.8 Aff_F58A6.8 P W All gene names: msp-45; F58A6.8; 2F446; NM_062558; WBGene00003438 WormBase description: msp-45 encodes a member of the major sperm protein family. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

F58A6.9 Aff_F58A6.9 P W All gene names: F58A6.9; 2F448; WBGene00019026 WormBase description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F58B3.1 Aff_F58B3.1 P W All gene names: lys-4; F58B3.1; 4M386; CE06003; NM_069791; WBGene00003093; WP:CE06003
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

H34I24.2 Aff_H34I24.2 P W All gene names: H34I24.2; Y71H2AR.C; 3D933; CE26681; WBGene00019261; WP:CE26681
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K01D12.15 Aff_K01D12.15 P W All gene names: K01D12.15; 5M867; CE28043; WBGene00010474; WP:CE28043
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

K03A1.2 Aff_K03A1.2 P W All gene names: K03A1.2; K03A1.2.1; K03A1.2.2; CE30088; WBGene00019351; WP:CE30088; XH913 WormBase description: LRR (leucine-rich repeats); FSHR (follicle stimulating hormone receptor)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

K03A1.5 Aff_K03A1.5 P W All gene names: sur-5; K03A1.5; CE04713; NM_076828; WBGene00006351; WP:CE04713; XH920 WormBase description: sur-5 encodes a protein with high similarity to H. sapiens Acetoacetyl-coenzyme A synthetase; sur-5 negatively regulates let-60 during vulval induction, based on genetic analysis, and genetically synergises with lin-45 with respect to larval death, uncoordinated movement and egg-laying defects; sur-5 is strongly expressed in most cells of C. elegans, including the VPCs and is localized primarily to the nucleus. WormBase CDS description: acetyl-coenzyme A synthetase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

K03H6.2 Aff_K03H6.2 P W All gene names: K03H6.2; 4C279; CE39583; WBGene00019368; WP:CE39583
K05F1.2 Aff_K05F1.2 P W All gene names: msp-142; K05F1.2; 2G89; NM_062743; WBGene00003469 WormBase description: msp-142 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: Major sperm protein (msp-142)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

K05F6.11 Aff_K05F6.5 P W All gene names: K05F6.11; CE39512; WBGene00044697; WP:CE39512
K06A5.2 Aff_K06A5.2 P W All gene names: K06A5.2; 1H45; CE11770; WBGene00019430; WP:CE11770
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

K07E3.4 Aff_K07E3.4 P W All gene names: K07E3.4; CE18020; WBGene00019492; WP:CE18020; XI700 WormBase description: tetrahydrofolate synthase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K07F5.5 Aff_K07F5.5 P W All gene names: K07F5.5; 4K609; CE06120; WBGene00010633; WP:CE06120
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

K11D2.2 Aff_K11D2.2 P W All gene names: asah-1; dod-7; K11D2.2; 1N99; CE12120; NM_060772; WBGene00010769; WP:CE12120 WormBase description: K11D2.2 is orthologous to the human gene N-ACYLSPHINGOSINE AMIDOHYDROLASE (ASAH; OMIM:228000), which when mutated leads to Farber lipogranulomatosis. WormBase CDS description: Human PHP32 protein like
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

K12G11.3 Aff_K12G11.3 P W All gene names: dod-11; sodh-1; K12G11.3; K12G11.3.1; K12G11.3.2; K12G11.3.3; 5M369; CE12212; NM_073590; WBGene00010790; WP:CE12212 WormBase description: alcohol dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Murphy et al 2003  Fig2 Class1 elongate                                  
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

M02H5.8 Aff_M02H5.B P W All gene names: M02H5.8; 5A925; CE21073; WBGene00019744; WP:CE21073
M18.1 Aff_M18.1 P W All gene names: col-129; M18.1; 4M874; CE06193; NM_069896; WBGene00000703; WP:CE06193 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M60.2 Aff_M60.1, Aff_M60.2 P W All gene names: M60.2; M60.2.1; M60.2.2; CE28630; WBGene00019779; WP:CE28630; XI865
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, Golden et al 2004, N2 differentially                               
                                              expressed gen, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S4                               
                                              genes pass two-wayANOVA P0                                                         

R05F9.8 Aff_R05F9.8 P W All gene names: msp-33; R05F9.8; 2F182; CE04811; NM_062487; WBGene00003431; WP:CE04811 WormBase description: msp-33 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-33 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the MSP family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

R07B1.10 Aff_R07B1.10 P W All gene names: lec-8; R07B1.10; R07B1.10.1; R07B1.10.2; CE26721; NM_077248; WBGene00002271; WP:CE26721; XK469 WormBase description: galaptin domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R08F11.4 Aff_R08F11.4 P W All gene names: R08F11.4; 5E282; CE12586; WBGene00019968; WP:CE12586
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Wang et al 2003  S4 TransientList, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R09B5.6 Aff_R09B5.6 P W All gene names: hacd-1; R09B5.6; R09B5.6.1; R09B5.6.2; 5B939; CE12628; WBGene00019978; WP:CE12628 WormBase description: 3-hydroxyacyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ReichertK et al 2005  T3 xenobiotic                             
                                              downregulated, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

R09E10.6 Aff_R09E10.6 P W All gene names: R09E10.6; 4L58; CE06288; WBGene00011176; WP:CE06288
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004,                                
                                              list of genes in cluster D, Reinke et al 2004, shared                              
                                              sperm, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T01D3.6 Aff_T01D3.6 P W All gene names: T01D3.6; 5O199; CE12964; CE18164; WBGene00011330; WP:CE12964; WP:CE18164 WormBase description: EGF-like domain, Fibrinogen beta and gamma chains, C-terminal globular domain
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T02B5.1 Aff_T02B5.1 P W All gene names: T02B5.1; 5O644; CE27775; WBGene00011362; WP:CE27775 WormBase description: carboxylesterase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, wt herm vs wt                                
                                              male enriched gen, Reinke et al 2004, herm soma                                    
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

T03F1.5 Aff_T03F1.5 P W All gene names: gsp-4; T03F1.5; 1E406; CE13104; NM_058836; WBGene00020187; WP:CE13104 WormBase description: serine/threonine protein phosphatase PP1
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, shared sperm,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T04A8.5 Aff_T04A8.5 P W All gene names: T04A8.5; 3F781; CE01074; WBGene00011407; WP:CE01074 WormBase description: Amidophosphoribosyltransferase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig5 conserved w/ yeast,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T05A1.2 Aff_T05A1.2 P W All gene names: col-122; T05A1.2; 4K329; CE03622; NM_069299; WBGene00000696; WP:CE03622 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

T10B5.7 Aff_T10B5.7 P W All gene names: T10B5.7; 5C325; CE18237; WBGene00020393; WP:CE18237 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T12B3.3 Aff_T12B3.B P W All gene names: T12B3.3; T12B3.B; 4I141; CE21178; WBGene00020446; WP:CE21178 WormBase description: phosphodiesterase
T12D8.5 Aff_T12D8.5 P W All gene names: T12D8.5; T12D8.5.1; T12D8.5.2; 3O714; CE33832; WBGene00011733; WP:CE33832
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, herm soma enriched genes, Romagnolo et al 2002                            
                                               Fig3b Unkown, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

T15B7.4 Aff_T15B7.4 P W All gene names: col-142; T15B7.4; 5H313; CE13654; NM_072335; WBGene00000715; WP:CE13654 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, Reinke et al 2004, list of                               
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T23B7.1 Aff_T23B7.1 P W All gene names: T23B7.1; 2F133; WBGene00020715
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, Romagnolo et al 2002  Fig3b Unkown,                                  
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T28H11.1 Aff_T28H11.1 P W All gene names: ssq-4; T28H11.1; 4F781; CE30698; NM_068303; WBGene00006053; WP:CE30698
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt males vs glp4 male                            
                                              enriched , Reinke et al 2004, spermatogenesis enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster D,                              
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, shared sperm, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T28H11.5 Aff_T28H11.5 P W All gene names: ssq-2; T28H11.5; 4F761; CE14377; NM_068297; WBGene00006051; WP:CE14377
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt males vs glp4 male                            
                                              enriched , Reinke et al 2004, spermatogenesis enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster D,                              
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, shared sperm, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

W02A2.2 Aff_W02A2.B P W All gene names: far-6; W02A2.2; W02A2.B; 4O91; CE21232; NM_070160; WBGene00001390; WP:CE21232
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 daf-16 Resveratrol                                                     

W05G11.3 Aff_W05G11.3 P W All gene names: col-88; W05G11.3; W05G11.3.1; W05G11.3.2; 3A659; CE14628; NM_064730; WBGene00000663; WP:CE14628 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

W06A7.5 Aff_W06A7.5 P W All gene names: nspa-8; W06A7.5; 5P306; CE14672; NM_074253; WBGene00012294; WP:CE14672
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

W08D2.4 Aff_W08D2.4 P W All gene names: fat-3; W08D2.4; 4K569; CE25153; NM_069351; WBGene00001395; WP:CE25153 WormBase description: The fat-3 gene encodes a delta-6 fatty acid desaturase ('linoleoyl-CoA desaturase') containing an N-terminal cytochrome b5 domain; FAT-3 expressed in yeast uses linoleic and alpha-linolenic acid as substrates; FAT-3 is absolutely required in vivo for synthesis of delta-6 fatty acids, and also required for fully normal synthesis of C20 fatty acids; FAT-3 is required for a normally fast growth rate and movement speed, and for normal defecation rhythms and fertility.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

W09B6.1 Aff_W09B6.1 P W All gene names: phi-47; pod-2; W09B6.1; W09B6.1a.1; W09B6.1a.2; 2B441; CE14734; CE36026; WBGene00004076; WBGene00021102; WP:CE14734; WP:CE36026 WormBase description: pod-2 is required for proper organization of the early embryonic cytoplasm; mutation of pod-2 causes a specific syndrome of embryonic defects both in polarity (maternal defects in anterior-posterior polarity of 1-2 cell stage embryos) and in osmotic resistance (abnormal sensitivity of early embryos to osmotic shock).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

W09C3.6 Aff_W09C3.6 P W All gene names: gsp-3; W09C3.6; 1F278; CE14754; NM_059028; WBGene00021113; WP:CE14754 WormBase description: serine/threonine protein phosphatase PP1
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004, GO                             
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              D, Reinke et al 2004, shared sperm, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

Y106G6H.13 Aff_Y106G6H.13 P W All gene names: Y106G6H.13; 1L47; CE20422; WBGene00013723; WP:CE20422
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004,                                
                                              list of genes in cluster D, Reinke et al 2004, shared                              
                                              sperm, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y11D7A.11 Aff_Y11D7A.11 P W All gene names: col-120; Y11D7A.11; 4K26; CE20194; NM_069216; WBGene00000694; WP:CE20194
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y39B6A.1 Aff_Y39B6.JJ P W All gene names: Y39B6A.1; Y39B6A.1.1; Y39B6A.1.2; 5T676; CE21682; WBGene00012664; WP:CE21682
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

Y46C8AL.2 Aff_Y46C8_95.A P W All gene names: Y46C8AL.2; 4E700; CE39845; WBGene00021580; WP:CE39845
Y47D7A.15 Aff_Y47D7A_143.C P W All gene names: Y47D7A.15; Y47D7A.B; 5E911; CE36236; WBGene00021627; WP:CE36236
Y48A6B.7 Aff_Y48A6B.7 P W All gene names: Y48A6B.7; 3M114; CE19190; WBGene00012968; WP:CE19190 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: Cytidine and deoxycytidylate deaminases zinc-binding region
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y51A2D.4 Aff_Y51A2D.4 P W All gene names: Y51A2D.4; Y51A2D.4.1; Y51A2D.4.2; 5T3; CE19201; WBGene00013073; WP:CE19201 WormBase description: Sugar (and other) transporters
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

Y54G2A.14 Aff_Y94H6A_151.C P W All gene names: clec-83; Y54G2A.14; Y54G2A.14.1; Y54G2A.14.2; Y94H6A_151.C; 4D604; CE39862; WBGene00021879; WP:CE39862
Y57G11A.2 Aff_Y57G11A.2 P W All gene names: Y57G11A.2; 4P282; CE16664; WBGene00013290; WP:CE16664
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y59E9AL.2 Aff_Y59E9_118.A P W All gene names: Y59E9AL.2; WBGene00043743
Y5F2A.2 Aff_Y5F2A.2 P W All gene names: Y5F2A.2; 4L830; CE19023; WBGene00012383; WP:CE19023 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Reinke                            
                                              et al 2004, fem3 enriched genes, Reinke et al 2004,                                
                                              mixed sperm soma, Reinke et al 2004, GO categories,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              Dauer Enriched                                                                     

Y69E1A.1 Aff_Y69E1A.A P W All gene names: Y69E1A.1; 4L712; CE22808; WBGene00013473; WP:CE22808
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y71H2AM.16 Aff_Y71H2_390.B P W All gene names: Y71H2AM.16; 3D846; CE22949; WBGene00022181; WP:CE22949
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

ZC155.1 Aff_ZC155.1 P W All gene names: nex-1; ZC155.1; ZC155.1.1; ZC155.1.2; ZC155.1.3; 3G315; CE01431; NM_065708; WBGene00003588; WP:CE01431 WormBase description: nex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC412.7 Aff_ZC412.7 P W All gene names: nspa-3; ZC412.7; 5P362; NM_074265; WBGene00013888
                                              
Member of lists (Publications lists):
                                              McElwee et al 2003  T1 targets of                                 
                                              daf-16, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZC416.6 Aff_ZC416.6 P W All gene names: ZC416.6; 4E374; CE28160; WBGene00022610; WP:CE28160 WormBase description: protease
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, Wang et al 2003  S4 Early genes, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK1193.1 Aff_ZK1193.1 P W All gene names: col-19; ZK1193.1; CE05126; NM_075699; WBGene00000608; WP:CE05126; XB41; col19 WormBase description: col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals. WormBase CDS description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

ZK1225.6 Aff_ZK1225.6 P W All gene names: ssp-31; ZK1225.6; 1N811; CE19345; NM_060917; WBGene00006048; WP:CE19345
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

ZK1248.6 Aff_ZK1248.6 P W All gene names: msp-64; ZK1248.6; 2G100; NM_062748; WBGene00003457 WormBase description: msp-64 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: Major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK131.9 Aff_ZK131.5 P W All gene names: his-15; ZK131.9; 2O109; NM_064487; WBGene00001889 WormBase description: his-15 encodes an H2B histone. WormBase CDS description: histone H2B
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

ZK1320.2 Aff_ZK1320.2 P W All gene names: ZK1320.2; ZK1320.2.1; ZK1320.2.2; 2J948; CE01700; WBGene00014252; WP:CE01700
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

ZK354.1 Aff_ZK354.1 P W All gene names: msp-65; ZK354.1; 4G81; NM_068379; WBGene00003458 WormBase description: msp-65 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein (MSP-65)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK484.8 Aff_ZK484.8 P W All gene names: ZK484.8; ZK484.8.1; ZK484.8.2; 1G674; CE15351; WBGene00022754; WP:CE15351
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK546.3 Aff_ZK546.3 P W All gene names: ZK546.3; 2F231; CE02917; WBGene00022760; WP:CE02917 WormBase description: Major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster D, Reinke et al 2004, shared sperm,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK546.6 Aff_ZK546.6 P W All gene names: msp-152; ZK546.6; 2F225; CE02920; NM_062500; WBGene00003470; WP:CE02920 WormBase description: msp-152 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: Major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

ZK666.6 Aff_ZK666.6 P W All gene names: clec-60; ZK666.6; 2K770; CE02391; WBGene00014046; WP:CE02391 WormBase description: von Willebrand factor type A domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol