Baugh et al 2003, class SET, 429 genes

Gene list file name:Baugh2003_classSET.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, class SET  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_B0564.10 Aff_B0564.10 P W
AFF_C09G5.8 Aff_C09G5.8 P W
AFF_F17C11.1 Aff_F17C11.1 P W
AFF_F40F12.2 Aff_F40F12.2 P W
AFF_K08B12.3 Aff_K08B12.3 P W
AFF_R52.10 Aff_R52.10 P W
AFF_T08B6.1 Aff_T08B6.1 P W
AFF_T21C12.4 Aff_T21C12.4 P W
AFF_T28A11.14 Aff_T28A11.14 P W
AFF_W09G12.3 Aff_W09G12.3 P W
AFF_Y106G6H.10 Aff_Y106G6H.10 P W
AFF_Y106G6H.10_G Aff_Y106G6H.10_G P W
AFF_Y116F11.ZZ17 Aff_Y116F11.ZZ17 P W
AFF_Y13C8_223.B Aff_Y13C8_223.B P W
AFF_Y41E3.5 Aff_Y41E3.5 P W
AFF_Y45F10A.3 Aff_Y45F10A.3 P W
AFF_Y47D3A.O Aff_Y47D3A.O P W
AFF_Y49F6A_1689.C Aff_Y49F6A_1689.C P W
AFF_Y56A3A.W Aff_Y56A3A.W P W
AFF_Y71A12B.A Aff_Y71A12B.A P W
B0024.14 Aff_B0024.14 P W All gene names: crm-1; B0024.14; B0024.14c.1; B0024.14c.2; 5K804; CE31276; CE31277; CE31278; CE31279; CE36907; NM_171529; NM_171530; NM_171531; NM_171935; WBGene00007103; WP:CE31276; WP:CE31277; WP:CE31278; WP:CE31279; WP:CE36907 WormBase description: pro-collagen domains
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

B0207.12 Aff_B0207.12 P W All gene names: avr-14; gbr-2; B0207.12; 1G544; CE26421; CE30227; CE32092; WBGene00000232; WP:CE26421; WP:CE30227; WP:CE32092 WormBase description: avr-14 encodes an alpha-type subunit of a glutamate-gated chloride channel homologous to human GLRA2, which when mutated leads to hyperekplexia (OMIM:149400); AVR-14 affects sensitivity to the antiparisitic drug, ivermectin, in parallel with avr-15 and glc-1 and in a genetic pathway with unc-9; it functions in the extrapharyngeal nervous system, and is expressed in a subset of neurons in the ring ganglia, ventral cord, and some mechanosensory neurons.
B0238.1 Aff_B0238.1 P W All gene names: B0238.1; 5F718; CE07691; WBGene00015067; WP:CE07691 WormBase description: carboxylesterase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ReichertK et al 2005 T1                                         

B0252.2 Aff_B0252.2 P W All gene names: asm-1; B0252.2; 2H201; CE30230; NM_063014; WBGene00000211; WP:CE30230 WormBase description: Spingomyelin phosphodiesterase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

B0303.14 Aff_B0303.14 P W All gene names: B0303.14; 3J804; CE00003; WBGene00015132; WP:CE00003 WormBase description: Giant secretory protein I-C
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0303.8 Aff_B0303.8 P W All gene names: sdz-1; B0303.8; 3J788; CE00001; WBGene00015129; WP:CE00001
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown                                

B0310.2 Aff_B0310.2 P W All gene names: B0310.2; B0310.2.1; B0310.2.2; CE03875; WBGene00015138; WP:CE03875; XB120 WormBase description: C2H2-type zinc fingers
B0462.3 Aff_B0462.3 P W All gene names: fbxb-119; B0462.3; 5S797; CE15556; WBGene00007182; WP:CE15556
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 daf-16 Resveratrol                                                     

B0563.1 Aff_B0563.1 P W All gene names: B0563.1; CE02439; WBGene00015261; WP:CE02439; XJ787
B0563.8 Aff_B0563.8 P W All gene names: B0563.8; CE39467; WBGene00015265; WP:CE39467; XJ788
C01F4.2 Aff_F57C9.8 P W All gene names: C01F4.2; 1F420; CE30414; CE33358; WBGene00015303; WP:CE30414; WP:CE33358
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C02B8.2 Aff_C02B8.2 P W All gene names: C02B8.2; CE03891; WBGene00015321; WP:CE03891; XI761
C05B5.4 Aff_C05B5.4 P W All gene names: C05B5.4; 3L81; CE00880; WBGene00007321; WP:CE00880
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D11.7 Aff_C05D11.7 P W All gene names: C05D11.7; C05D11.7a.1; C05D11.7a.2; 3H506; CE29663; CE30480; WBGene00015484; WP:CE29663; WP:CE30480
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C05D12.4 Aff_C05D12.4 P W All gene names: C05D12.4; 2L721; CE02972; WBGene00007341; WP:CE02972
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C05D12.5 Aff_C05D12.5 P W All gene names: C05D12.5; 2L723; CE02973; WBGene00007342; WP:CE02973
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05E4.1 Aff_C05E4.1 P W All gene names: pes-21; C05E4.1; 5B243; CE07935; NM_070917; WBGene00005643; WP:CE07935 WormBase description: srp-2 encodes an ovalbumin-like serpin (ov-serpin) member of the serine protease inhibitor superfamily that is orthologous to human NEUROSERPIN (OMIM:602445, mutated in familial encephalopathy with neuroserpin inclusion bodies); SRP-2 is predicted to function as a suicide substrate that inhibits the proteolytic activity of serine proteases, and in vitro, recombinant SRP-2 is able to inhibit granzyme B activity; however, as loss of srp-2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of SRP-2 in C. elegans development and/or behavior is not yet known; srp-2 expression is detected in hypodermal cells, particularly in the lateral seam cells. WormBase CDS description: serine protease inhibitor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Wang et al 2003  S6 removed genes of                             
                                              contamination                                                                      

C06G4.2 Aff_C06G4.2 P W All gene names: clp-1; C06G4.2; C06G4.2a.1; C06G4.2a.2; C06G4.2b.1; C06G4.2b.2; C06G4.2b.3; 3J75; CE00517; CE30486; CE37743; CE37744; NM_066339; NM_066340; NM_171201; NM_171886; WBGene00000542; WP:CE00517; WP:CE30486; WP:CE37743; WP:CE37744 WormBase description: clp-1 encodes a calpain homolog that has significant identity to mammalian calpains over its whole length and that contains motifs typical of calpains, including a thiol (cysteine) protease active site and a Ca[2+]-binding domain; CLP-1 is required, in parallel with TRA-3 but in series with ASP-3 and ASP-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C08B11.3 Aff_C08B11.3 P W All gene names: C08B11.3; 2I314; CE01473; WBGene00007433; WP:CE01473 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2 daf-16                            
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C08F1.3 Aff_C08F1.3 P W All gene names: fbxb-13; C08F1.3; 2C79; CE08018; WBGene00015607; WP:CE08018 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
C08F1.8 Aff_C08F1.8 P W All gene names: C08F1.8; 2C92; CE08023; WBGene00015611; WP:CE08023 WormBase description: reverse transcriptase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C08F8.5 Aff_C08F8.5 P W All gene names: fbxb-9; C08F8.5; 4L924; CE05252; WBGene00007447; WP:CE05252 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

C10C6.3 Aff_C10C6.3 P W All gene names: C10C6.3; 4M226; CE35392; WBGene00007512; WP:CE35392
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes                                                          

C10E2.4 Aff_C10E2.4 P W All gene names: C10E2.4; CE08063; WBGene00015674; WP:CE08063; XR360
C11G6.2 Aff_C11G6.2 P W All gene names: C11G6.2; CE05256; WBGene00007523; WP:CE05256; XQ943 WormBase description: helicase like
C13B7.5 Aff_Y45G12C.G P W All gene names: str-119; C13B7.5; C13B7.A; 5C904; CE20503; NM_071265; WBGene00006170; WP:CE20503 WormBase description: 7TM chemoreceptor, str family
C16C4.6 Aff_C16C4.6 P W All gene names: fbxb-98; C16C4.6; 2C131; CE08202; WBGene00015830; WP:CE08202 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C17B7.3 Aff_C17B7.3 P W All gene names: C17B7.3; 5D823; CE16851; WBGene00015877; WP:CE16851
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C17C3.7 Aff_C17C3.7 P W All gene names: hlh-25; C17C3.7; 2F825; CE04027; NM_062662; WBGene00001964; WP:CE04027
C17C3.8 Aff_C17C3.8 P W All gene names: hlh-26; C17C3.8; 2F822; CE04028; NM_062661; WBGene00001965; WP:CE04028
C17G1.7 Aff_C17G1.7 P W All gene names: C17G1.7; C17G1.7.1; C17G1.7.2; CE39223; WBGene00007653; WP:CE39223; XK572 WormBase description: cysteine synthase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C18A11.7 Aff_C18A11.7 P W All gene names: dim-1; C18A11.7; C18A11.7b.1; C18A11.7b.2; C18A11.7b.3; C18A11.7b.4; CE04038; CE27706; WBGene00001000; WP:CE04038; WP:CE27706; XI670
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C                                      

C18D1.1 Aff_C18D1.1 P W All gene names: die-1; C18D1.1; C18D1.1.1; C18D1.1.2; 2K352; CE01501; NM_063774; WBGene00000995; WP:CE01501 WormBase description: die-1 encodes a C2H2 zinc finger protein containing four fingers, homologous to CG18265-PA in Drosophila; DIE-1 is autonomously required in the posterior dorsal hypodermis for intercalation, for morphogenesis in other embryonic tissues, and for normal postembryonic growth and vulval development. WormBase CDS description: Zinc finger, C2H2 type (3 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

C23H4.6 Aff_C23H4.6 P W All gene names: C23H4.6; CE08332; WBGene00007694; WP:CE08332; XM859 WormBase description: Yeast RAD18 protein like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol                             

C24H11.2 Aff_C24H11.1 P W All gene names: C24H11.2; 3M880; CE18525; WBGene00007700; WP:CE18525 WormBase description: Protein phosphatase-1 (PP1)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt herm enriched gen, Reinke et al                             
                                              2004, fem3 enriched genes, Reinke et al 2004, wt males                             
                                              vs glp4 male enriched , Reinke et al 2004, mixed sperm                             
                                              soma, Reinke et al 2004, list of genes in cluster D,                               
                                              Reinke et al 2004, GO categories                                                   

C24H11.3 Aff_C24H11.3 P W All gene names: tbx-38; C24H11.3; 3M874; CE18526; NM_067125; WBGene00006557; WP:CE18526 WormBase description: T-box
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

C26B9.1 Aff_C26B9.1 P W All gene names: C26B9.1; CE30880; CE34262; NM_076507; WBGene00016131; WP:CE30880; WP:CE34262
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C27C7.7 Aff_C27C7.7 P W All gene names: C27C7.7; 1M11; CE18537; WBGene00007769; WP:CE18537
C28G1.4 Aff_C28G1.4 P W All gene names: C28G1.4; CE04121; WBGene00016189; WP:CE04121; XJ468 WormBase description: zinc finger
C29F7.6 Aff_C29F7.6 P W All gene names: C29F7.6; CE08447; WBGene00007813; WP:CE08447; XO59
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C30G4.3 Aff_C30G4.3 P W All gene names: gcy-11; C30G4.3; CE39901; NM_078354; WBGene00001537; WP:CE39901; XR660 WormBase description: guanylate cyclase receptor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C31H2.4 Aff_C31H2.4 P W All gene names: C31H2.4; CE04132; WBGene00016294; WP:CE04132; XF772 WormBase description: C31H2.4 is orthologous to human 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (HPD; OMIM:276710), which when mutated leads to tyrosinemia type III; C31H2.4 is somewhat less similar to human HPD than C. elegans HPD-1 (to which C31H2.4 is paralogous).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C32B5.14 Aff_C32B5.14 P W All gene names: C32B5.14; 2B254; CE08522; WBGene00016307; WP:CE08522
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C32B5.16 Aff_C32B5.16 P W All gene names: sdz-4; C32B5.16; 2B251; CE08524; WBGene00016309; WP:CE08524
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C32B5.5 Aff_C32B5.5 P W All gene names: C32B5.5; 2B261; CE34725; WBGene00016298; WP:CE34725
C32B5.9 Aff_C32B5.9 P W All gene names: C32B5.9; 2B247; CE08517; WBGene00016302; WP:CE08517
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C33A12.12 Aff_C33A12.12 P W All gene names: C33A12.12; 4K248; CE15665; WBGene00007887; WP:CE15665 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C33C12.5 Aff_C33C12.5 P W All gene names: fbxb-38; C33C12.5; 2C458; CE08553; WBGene00016337; WP:CE08553 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

C33E10.1 Aff_C33E10.1 P W All gene names: C33E10.1; CE34265; WBGene00016345; WP:CE34265; XR919 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C34E11.1 Aff_C34E11.1 P W All gene names: rsd-3; C34E11.1; C34E11.1.1; C34E11.1.2; CE03062; NM_077572; WBGene00004682; WP:CE03062; XM421 WormBase description: yeast hypothetical L8167.6 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C34G6.4 Aff_C34G6.4 P W All gene names: pgp-2; C34G6.4; 1G471; CE29212; NM_059306; WBGene00003996; WP:CE29212 WormBase description: pgp-2 encodes a member of the ABC transporter family with highest similarity to the vertebrate MDR (multidrug resistance) family, and is orthologous to human MDR1 (ABCB1; OMIM:171050, mutated in Crohn disease); PGP-2 is expressed at lower levels during the embryonic stages with higher expression later in development. WormBase CDS description: abc transporter
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C                                                                          

C35C5.1 Aff_C35C5.1 P W All gene names: sdc-2; C35C5.1; CE18542; NM_077523; WBGene00004746; WP:CE18542; XM151 WormBase description: The sdc-2 gene encodes a protein that represses transcription of X chromosomes to achieve dosage compensation, and that also represses the male sex-determination gene her-1 to elicit hermaphrodite differentiation.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C35D6.3 Aff_C35D6.3 P W All gene names: C35D6.3; 4R99; CE15682; WBGene00007960; WP:CE15682
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C35E7.3 Aff_C35E7.3 P W All gene names: C35E7.3; 1L415; CE17516; WBGene00016455; WP:CE17516
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C38C6.4 Aff_C38C6.4 P W All gene names: sre-13; C38C6.4; 2O918; CE38042; NM_064641; WBGene00007997; WP:CE38042 WormBase description: 7TM receptor, sre family
C40A11.7 Aff_C40A11.7 P W All gene names: C40A11.7; 2C438; CE19370; WBGene00016550; WP:CE19370
C43D7.8 Aff_Y116F11.I P W All gene names: C43D7.8; 5T784; CE18552; WBGene00008070; WP:CE18552 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C44C8.1 Aff_C44C8.1 P W All gene names: C44C8.1; 4B655; CE17541; WBGene00016646; WP:CE17541 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C44C8.2 Aff_C44C8.2 P W All gene names: C44C8.2; 4B653; CE17542; WBGene00016647; WP:CE17542
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C46C11.2 Aff_C46C11.2 P W All gene names: C46C11.2; CE39005; CE39006; WBGene00016705; WP:CE39005; WP:CE39006; XF253
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C46H11.9 Aff_C46H11.9 P W All gene names: phat-2; C46H11.9; 1F614; CE08791; WBGene00016733; WP:CE08791
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

C47C12.3 Aff_C47C12.3 P W All gene names: C47C12.3; C47C12.3a.1; C47C12.3a.2; CE33037; CE35437; NM_076907; WBGene00004335; WP:CE33037; WP:CE35437; XI361 WormBase description: ref-2 is orthologous to the human gene ZINC FINGER PROTEIN OF CEREBELLUM ZIC2 (ZIC2; OMIM:603073), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C47D12.4 Aff_C47D12.4 P W All gene names: C47D12.4; 2L969; CE20568; WBGene00008138; WP:CE20568 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C47F8.1 Aff_C47F8.1 P W All gene names: C47F8.1; 1M929; CE17570; WBGene00008157; WP:CE17570 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C48D1.1 Aff_C48D1.1 P W All gene names: C48D1.1; 4N958; CE32833; CE39701; WBGene00008177; WP:CE32833; WP:CE39701 WormBase description: C.elegans ZYG-11 like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes                                                                              

C50A2.4 Aff_C50A2.4 P W All gene names: C50A2.4; 4B908; CE17582; WBGene00016798; WP:CE17582
C50E10.4 Aff_C50E10.4 P W All gene names: sop-2; C50E10.4; 2M633; CE32334; NM_064220; WBGene00004945; WP:CE32334
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C50F2.1 Aff_C50F2.1 P W All gene names: C50F2.1; 1E461; CE36635; WBGene00016835; WP:CE36635
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C51E3.2 Aff_C51E3.2 P W All gene names: srsx-27; C51E3.2; 5K627; CE33986; NM_073208; WBGene00008248; WP:CE33986 WormBase description: opoid receptor
C52B11.2 Aff_C52B11.2 P W All gene names: tag-303; C52B11.2; CE04258; WBGene00016871; WP:CE04258; XB927 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C52D10.6 Aff_C52D10.6 P W All gene names: skr-12; C52D10.6; 4S111; CE17590; NM_070644; WBGene00004818; WP:CE17590 WormBase description: skr-12 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-12 has no known function in vivo, since skr-12(RNAi) animals are at least superficially normal. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C52D10.7 Aff_C52D10.7 P W All gene names: skr-9; C52D10.7; 4S107; CE17591; NM_070642; WBGene00004815; WP:CE17591 WormBase description: skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C52D10.8 Aff_C52D10.8 P W All gene names: skr-13; C52D10.8; 4S106; CE17592; NM_070641; WBGene00004819; WP:CE17592 WormBase description: The skr-13 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-13(RNAi) animals are at least superficially normal. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Lund et al 2002  Fig3D Oocyte-en,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              Romagnolo et al 2002  Fig3b Proteases, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C52E2.1 Aff_C52E2.I P W All gene names: fbxb-95; C52E2.1; C52E2.I; 2C127; CE25826; WBGene00016880; WP:CE25826 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

D2096.1 Aff_D2096.1 P W All gene names: D2096.1; 4J163; CE04299; WBGene00017069; WP:CE04299
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

E03E2.1 Aff_E03E2.1 P W All gene names: cyp-43A1; E03E2.1; E03E2.1.1; E03E2.1.2; CE29747; NM_076560; WBGene00017108; WP:CE29747; XG335 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

E04F6.2 Aff_E04F6.2 P W All gene names: E04F6.2; 2H491; CE01214; WBGene00017122; WP:CE01214
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

EEED8.12 Aff_EEED8.12 P W All gene names: EEED8.12; 2F700; CE01885; WBGene00017140; WP:CE01885 WormBase description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F07E5.2 Aff_F07E5.2 P W All gene names: fbxb-35; F07E5.2; 2C343; CE09215; WBGene00017208; WP:CE09215 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F07E5.6 Aff_F07E5.6 P W All gene names: fbxb-36; F07E5.6; 2C348; CE09218; WBGene00017211; WP:CE09218
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

F08D12.10 Aff_F08D12.10 P W All gene names: fbxb-110; sdz-9; F08D12.10; 2D62; CE09243; WBGene00017253; WP:CE09243 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

F08D12.11 Aff_F08D12.11 P W All gene names: fbxb-111; F08D12.11; 2D64; CE09244; WBGene00017254; WP:CE09244 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
F08D12.8 Aff_F08D12.8 P W All gene names: fbxb-105; F08D12.8; 2D58; CE09241; WBGene00017251; WP:CE09241 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

F08D12.9 Aff_F08D12.9 P W All gene names: fbxb-109; sdz-10; F08D12.9; 2D60; CE09242; WBGene00017252; WP:CE09242 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

F08H9.3 Aff_F08H9.3 P W All gene names: F08H9.3; 5O942; CE09267; WBGene00008591; WP:CE09267 WormBase description: F08H9.3 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the larval pharynx and the anterior adult pharynx), and its expression is not strongly induced by heat shock; however, F08H9.3 expression is increased by heat shock (with adult expression in the full pharynx) and probably aids heat shock resistance, since F08H9.3(RNAi) animals have sensitivity to heat shock that is sporadically higher than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, Lund et al 2002 Aging time                                
                                              course Fig2C heatshock, Lund et al 2002  Fig4 Mount 15,                            
                                              Romagnolo et al 2002  Fig2a heat shock                                             

F10D2.10 Aff_F10D2.10 P W All gene names: F10D2.10; 5H634; CE32860; WBGene00017335; WP:CE32860
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes, Wang et al 2003  S4 Early genes,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F10D2.12 Aff_F10D2.8 P W All gene names: F10D2.12; 5H628; CE30746; WBGene00017337; WP:CE30746
F10E7.1 Aff_F10E7.1 P W All gene names: F10E7.1; 2H419; CE39350; WBGene00017343; WP:CE39350
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F13E9.6 Aff_F13E9.6 P W All gene names: sdz-13; F13E9.6; 4L642; CE05608; WBGene00008755; WP:CE05608
F14B6.1 Aff_F14B6.1 P W All gene names: sdz-14; F14B6.1; 1M808; CE17663; WBGene00008782; WP:CE17663
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F14B6.3 Aff_F14B6.3 P W All gene names: F14B6.3; 1M823; CE17665; WBGene00008784; WP:CE17665
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F14E5.4 Aff_F14E5.4 P W All gene names: F14E5.4; 2I720; CE03207; WBGene00008802; WP:CE03207 WormBase description: acid phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, fem3 enriched genes, Reinke et al 2004, wt                                
                                              males vs glp4 male enriched , Reinke et al 2004, mixed                             
                                              sperm soma, Reinke et al 2004, list of genes in cluster                            
                                              D, Reinke et al 2004, herm soma enriched genes, Reinke                             
                                              et al 2004, GO categories                                                          

F15A4.2 Aff_F15A4.2 P W All gene names: F15A4.2; 2M755; CE15839; WBGene00008838; WP:CE15839 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F16H11.2 Aff_F16H11.2 P W All gene names: F16H11.2; CE04397; WBGene00017531; WP:CE04397; XF281
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F17C11.2 Aff_F17C11.2 P W All gene names: F17C11.2; F17C11.2.1; F17C11.2.2; 5L427; CE05649; WBGene00008914; WP:CE05649
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F17E9.13 Aff_F35H10.1 P W All gene names: his-33; F17E9.13; 4J100; NM_069007; WBGene00001907 WormBase description: his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F19C6.5 Aff_F19C6.5 P W All gene names: F19C6.5; CE01558; WBGene00008954; WP:CE01558; XK598
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C                               

F19C7.3 Aff_F19C7.3 P W All gene names: F19C7.3; 4F361; CE04417; WBGene00017593; WP:CE04417
F19F10.1 Aff_F19F10.1 P W All gene names: F19F10.1; 5I41; CE09481; WBGene00017598; WP:CE09481 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Reinke et al 2004, wt herm vs wt herm enriched gen,                            
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              IVb male soma enriched genes, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

F19F10.5 Aff_F19F10.5 P W All gene names: F19F10.5; 5I36; CE09485; WBGene00017601; WP:CE09485 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F21D9.1 Aff_F21D9.1 P W All gene names: F21D9.1; 5T745; CE18627; WBGene00009015; WP:CE18627 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F21D9.5 Aff_F21D9.5 P W All gene names: F21D9.5; 5T721; CE18631; WBGene00009019; WP:CE18631
F22E5.1 Aff_F22E5.1 P W All gene names: F22E5.1; 2C965; CE09553; WBGene00017703; WP:CE09553
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Wang et al 2003                            
                                               S5 genes common to feeding ANOVA, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA                                                           

F22E5.17 Aff_F34D6.1 P W All gene names: F22E5.17; 2C969; CE27992; WBGene00017712; WP:CE27992
F22G12.3 Aff_F22G12.3 P W All gene names: F22G12.3; 1N737; CE15890; WBGene00009063; WP:CE15890 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F22G12.5 Aff_F22G12.5 P W All gene names: F22G12.5; 1N773; CE15892; WBGene00009065; WP:CE15892
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F22H10.4 Aff_F22H10.4 P W All gene names: F22H10.4; CE09573; WBGene00017728; WP:CE09573; XR296
F23A7.1 Aff_F23A7.1 P W All gene names: F23A7.1; CE09576; WBGene00009067; WP:CE09576; XQ831
F23F12.4 Aff_F23F12.4 P W All gene names: sdz-15; F23F12.4; 3H587; CE01251; WBGene00017752; WP:CE01251 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F25G6.3 Aff_F25G6.3 P W All gene names: acr-16; F25G6.3; 5J43; CE09639; CE32878; Ce21; NM_072806; WBGene00000055; WP:CE09639; WP:CE32878 WormBase description: acr-16 encodes an alpha-7-like homomer-forming subunit of the nicotinic acetylcholine receptor (nAChR) superfamily orthologous to human nicotinic cholinergic receptor alpha 7 (CHRNA7; OMIM:118511; possibly associated with schizophrenia and juvenile myoclonic epilepsy); ACR-16 functions as a ligand-gated ion channel that probably regulates fast action of acetylcholine at neuromuscular junctions and in the nervous system; ACR-16 is active as a homomeric receptor and responds robustly to acetylcholine when expressed in Xenopus oocytes.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3B neuro-specific                             
                                              genes, Romagnolo et al 2002  Fig3b signaling, Wang et                              
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F26A1.2 Aff_F26A1.2 P W All gene names: fkh-5; F26A1.2; 3F935; CE02683; NM_065602; WBGene00001437; WP:CE02683 WormBase description: fkh-5 encodes a member of the forkhead domain transcription factor family.
F28H1.1 Aff_F28H1.1 P W All gene names: F28H1.1; 1E565; CE09766; WBGene00017908; WP:CE09766
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F29A7.1 Aff_F29A7.1 P W All gene names: fbxb-106; F29A7.1; 2D53; CE09772; WBGene00017911; WP:CE09772 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

F29A7.2 Aff_F29A7.2 P W All gene names: fbxb-107; F29A7.2; 2D51; CE36834; WBGene00017912; WP:CE36834
F31D5.6 Aff_F31D5.6 P W All gene names: F31D5.6; 2E501; CE19829; WBGene00017949; WP:CE19829 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F31E9.4 Aff_F31E9.4 P W All gene names: sdz-16; F31E9.4; 5R806; CE15938; WBGene00009297; WP:CE15938 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F32A11.6 Aff_F32A11.6 P W All gene names: moe-3; F32A11.6; 2N452; CE18657; NM_064394; WBGene00003388; WP:CE18657 WormBase description: Zinc finger C-x8-C-x5-C-x3-H type (and similar).
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F32B6.6 Aff_F32B6.6 P W All gene names: msp-77; F32B6.6; 4K659; CE09861; NM_069380; WBGene00003464; WP:CE09861 WormBase description: msp-77 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

F35C11.6 Aff_F35C11.6 P W All gene names: F35C11.6; 2I548; CE02212; WBGene00009405; WP:CE02212
F35E2.8 Aff_F35E2.8 P W All gene names: F35E2.8; 1M309; CE17777; WBGene00009415; WP:CE17777 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F35H8.7 Aff_F35H8.7 P W All gene names: wee-1.1; F35H8.7; 2J872; CE09940; NM_063657; WBGene00006938; WP:CE09940 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F36A2.3 Aff_F36A2.3 P W All gene names: F36A2.3; 1J377; CE15964; WBGene00009453; WP:CE15964
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F36A4.8 Aff_F36A4.8 P W All gene names: F36A4.8; F36A4.8.1; F36A4.8.2; 4F11; CE07184; WBGene00018085; WP:CE07184
F37D6.4 Aff_F37D6.4 P W All gene names: F37D6.4; 1L65; CE05821; WBGene00009510; WP:CE05821 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

F38C2.5 Aff_F38C2.5 P W All gene names: F38C2.5; 4R43; CE16004; WBGene00009537; WP:CE16004 WormBase description: Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F38C2.7 Aff_F38C2.7 P W All gene names: F38C2.7; 4R32; CE16006; WBGene00009539; WP:CE16006 WormBase description: Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F38H4.2 Aff_F38H4.2 P W All gene names: fbxb-3; F38H4.2; 4M605; CE10060; WBGene00009546; WP:CE10060 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F39F10.4 Aff_F39F10.4 P W All gene names: F39F10.4; CE07206; WBGene00018204; WP:CE07206; XR516
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

F40F4.1 Aff_F40F4.1 P W All gene names: fbxb-71; F40F4.1; CE04531; WBGene00018236; WP:CE04531; XD883 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Romagnolo et al 2002  Fig3b Unkown, Romagnolo                            
                                              et al 2002 Fig5 genes in let-60 timecour, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F40G9.12 Aff_F40G9.12 P W All gene names: F40G9.12; 3A789; CE19859; WBGene00018247; WP:CE19859
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40G9.9 Aff_F40G9.9 P W All gene names: F40G9.9; 3A784; CE32413; WBGene00018245; WP:CE32413 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F40H6.4 Aff_F40H6.4 P W All gene names: CE-TBX-11; tbx-11; F40H6.4; 3H134; CE01281; NM_065916; WBGene00006547; WP:CE01281 WormBase description: tbx-11 encodes a T-box transcription factor that is orthologous to members of the Tbx2 subfamily of T-box transcription factors; by homology, TBX-11 is predicted to function in transcriptional regulation during cellular differentiation, potentially as both an activator and a repressor; however, as loss of tbx-11 function via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of tbx-11 in C. elegans development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

F42E11.1 Aff_F42E11.1 P W All gene names: pgp-4; F42E11.1; F42E11.1.1; F42E11.1.2; CE03308; NM_077501; WBGene00003998; WP:CE03308; XL981 WormBase description: pgp-4 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; PGP-4 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-4 activity via deletion mutations or RNAi results in no obvious defects, the precise role of PGP-4 in C. elegans development and/or behavior is not yet known; pgp-4 promoter-gfp fusion proteins are expressed in the larval excretory cell. WormBase CDS description: p-glycoprotein
F43G6.5 Aff_F43G6.5 P W All gene names: F43G6.5; 2M106; CE23726; WBGene00009658; WP:CE23726 WormBase description: poly (A) polymerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F44A2.7 Aff_F44A2.7 P W All gene names: F44A2.7; 5J799; CE35308; WBGene00018406; WP:CE35308
F44E5.2 Aff_F44E5.2 P W All gene names: F44E5.2; 2M63; CE18677; WBGene00009689; WP:CE18677 WormBase description: Leucine Rich Repeat (2 copies)
F44E5.4 Aff_F44E5.4 P W All gene names: F44E5.4; F44E5.4.1; F44E5.4.2; 2M48; CE18679; WBGene00009691; WP:CE18679 WormBase description: Heat shock hsp70 proteins
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress, Lund                            
                                              et al 2002 Aging time course Fig2C heatshock, Reinke et                            
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, Romagnolo et al 2002                             
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F44F1.4 Aff_F44F1.4 P W All gene names: F44F1.4; 1N856; CE10418; WBGene00009696; WP:CE10418
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F44F1.5 Aff_F44F1.5 P W All gene names: F44F1.5; 1N848; CE10420; WBGene00009697; WP:CE10420
F44F1.7 Aff_F44F1.7 P W All gene names: vet-6; F44F1.7; 1N863; CE10424; NM_060931; WBGene00006902; WBGene00009699; WP:CE10424 WormBase description: vet-6 encodes a protein that contains a spectrin repeat; vet-6 is preferentially transcribed in embryos prior to gastrulation.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45C12.11 Aff_F45C12.11 P W All gene names: bath-32; sdz-18; F45C12.11; 2B994; CE10456; WBGene00018442; WP:CE10456
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45C12.13 Aff_F45C12.13 P W All gene names: fbxb-48; F45C12.13; 2C6; CE10460; WBGene00018444; WP:CE10460
F45C12.14 Aff_F45C12.14 P W All gene names: fbxb-5; F45C12.14; 2C8; CE36850; WBGene00018445; WP:CE36850 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
F45C12.6 Aff_F45C12.6 P W All gene names: F45C12.6; 2C13; CE10446; WBGene00018437; WP:CE10446
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F45D11.13 Aff_F45D11_40.E P W All gene names: fbxb-30; F45D11.13; 2B292; CE35933; WBGene00018458; WP:CE35933
F45D11.5 Aff_F45D11_40.I P W All gene names: F45D11.5; F45D11.M; 2B293; CE35934; WBGene00018452; WP:CE35934
F45D11.6 Aff_F45D11_40.H P W All gene names: F45D11.6; 2B289; CE35935; WBGene00018453; WP:CE35935
F45D3.1 Aff_F45D3.1 P W All gene names: F45D3.1; 5N7; CE10468; WBGene00009721; WP:CE10468
F46A9.6 Aff_C17E4.11 P W All gene names: mec-8; F46A9.6; F46A9.6.1; F46A9.6.2; F46A9.6.3; 1K18; CE08260; NM_060107; WBGene00003172; WP:CE08260 WormBase description: mecanosensory gene mec-8
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F47A4.2 Aff_F47A4.2 P W All gene names: dpy-22; mdt-12; psa-6; sop-1; F47A4.2; CE16058; NM_077244; WBGene00001081; WP:CE16058; XK430 WormBase description: dpy-22 encodes a broadly expressed protein, homologous to the human transcriptional mediator protein TRAP230, which is involved in WNT and RAS signaling, as well as in dosage compensation; DPY-22 has a C-terminal glutamine-rich domain that is dispensable for inhibition of RAS-dependent cell differentiation, but is required for inhibition of BAR-1-dependent gene expression.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen                                                                       

F48E8.1 Aff_F48E8.1 P W All gene names: lon-1; F48E8.1; 3G567; CE01953; CE29046; CE30996; NM_065765; NM_065766; NM_171866; WBGene00003055; WP:CE01953; WP:CE29046; WP:CE30996 WormBase description: The lon-1 gene encodes a protein belonging to the PR-protein superfamily that is a target of DBL-1 (TGF-beta) signaling, and that regulates polyploidization and body length.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F49B2.1 Aff_F49B2.1 P W All gene names: fbxb-8; F49B2.1; 1O891; CE28559; WBGene00009861; WP:CE28559 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes                                                                              

F49B2.2 Aff_F49B2.2 P W All gene names: fbxb-67; F49B2.2; 1O885; CE16073; WBGene00009862; WP:CE16073 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F49H6.5 Aff_F49H6.5 P W All gene names: F49H6.5; 5R501; CE18715; WBGene00009908; WP:CE18715 WormBase description: The F49H6.5 gene encodes a homolog of the human gene MOCS1A, which when mutated leads to molybdenum cofactor deficiency (OMIM:252150).
F52G3.5 Aff_F52G3.5 P W All gene names: F52G3.5; CE35720; WBGene00018713; WP:CE35720; XR588
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F52H3.5 Aff_F52H3.5 P W All gene names: F52H3.5; 2K321; CE03401; WBGene00009947; WP:CE03401
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F53C3.11 Aff_F53C3.11 P W All gene names: F53C3.11; 2E196; CE19449; WBGene00018754; WP:CE19449
F53C3.2 Aff_F53C3.2 P W All gene names: fbxb-103; F53C3.2; 2E197; CE19440; WBGene00018746; WP:CE19440 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

F53F8.5 Aff_F53F8.5 P W All gene names: F53F8.5; 5V168; CE17859; WBGene00010002; WP:CE17859
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes                                        

F53G2.6 Aff_F53G2.6 P W All gene names: tsr-1; F53G2.6; 2C752; CE37021; NM_061878; WBGene00006647; WP:CE37021 WormBase description: tsr-1 encodes a homolog of human transportin-SR, a nuclear transport receptor, and affects embryonic viability.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

F53H2.3 Aff_F53H2.3 P W All gene names: F53H2.3; 5U866; CE19888; WBGene00010006; WP:CE19888
F53H8.3 Aff_F53H8.3 P W All gene names: F53H8.3; CE04656; WBGene00018779; WP:CE04656; XB557 WormBase description: glucose transporter
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Early genes, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F54A5.1 Aff_F54A5.E P W All gene names: F54A5.1; F54A5.1.1; F54A5.1.2; F54A5.E; 1B465; CE20859; WBGene00018786; WP:CE20859
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster B, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F54E7.5 Aff_F54E7.5 P W All gene names: sdz-21; F54E7.5; 3G744; CE01316; WBGene00018828; WP:CE01316
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F55A4.8 Aff_F55A4.8 P W All gene names: F55A4.8; F55A4.8c.1; F55A4.8c.2; CE19463; CE31182; CE31183; WBGene00018860; WP:CE19463; WP:CE31182; WP:CE31183; XB658
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

F55A8.1 Aff_Y48A5B.B P W All gene names: egl-18; elt-5; pvl-3; F55A8.1; F55A8.1.1; F55A8.1.2; F55A8.1.3; 4C681; CE28339; NM_067742; WBGene00001186; WP:CE28339 WormBase description: egl-18 encodes a member of the GATA-family of transcription factors that affects cell migration, cell fate specification; expressed in the head, in hypodermal seam cells, VC neurons, and vulval precursor cells. WormBase CDS description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F55B11.1 Aff_F55B11.1 P W All gene names: F55B11.1; 4P166; CE16116; WBGene00010083; WP:CE16116 WormBase description: The F55B11.1 gene encodes an ortholog of the human gene XANTHINE DEHYDROGENASE (XDH), which when mutated leads to xanthinuria (OMIM:278300). WormBase CDS description: xanthine dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F55C10.2 Aff_F55C10.2 P W All gene names: col-154; F55C10.2; 5L865; CE05952; NM_073485; WBGene00000727; WP:CE05952 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F55C9.1 Aff_F55C9.1 P W All gene names: fbxb-117; F55C9.1; 5T759; CE18733; WBGene00010099; WP:CE18733 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.10 Aff_F55C9.10, Aff_Y116F11.H P W All gene names: fbxb-61; F55C9.10; 5T775; CE18742; WBGene00010106; WP:CE18742 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.13 Aff_F55C9.9 P W All gene names: fbxb-63; F55C9.13; F55C9.9; CE18741; WBGene00044197; WP:CE18741
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F55C9.3 Aff_F55C9.3 P W All gene names: F55C9.3; 5T762; CE18735; WBGene00010100; WP:CE18735
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F55C9.4 Aff_F55C9.4 P W All gene names: fbxb-57; F55C9.4; 5T763; CE18736; WBGene00010101; WP:CE18736 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.5 Aff_F55C9.5 P W All gene names: F55C9.5; 5T764; CE18737; WBGene00010102; WP:CE18737
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F55C9.7 Aff_F55C9.7, Aff_Y116F11.F P W All gene names: fbxb-60; F55C9.7; 5T771; CE18739; WBGene00010104; WP:CE18739 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55D12.1 Aff_F55D12.1 P W All gene names: F55D12.1; 1I459; CE05955; WBGene00010110; WP:CE05955
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

F55G7.2 Aff_F55G7.2 P W All gene names: F55G7.2; CE03424; WBGene00010120; WP:CE03424; XM546
F56A11.3 Aff_F56A11.3 P W All gene names: efn-4; mab-26; F56A11.3; 4B319; CE29503; NM_067546; WBGene00001165; WP:CE29503 WormBase description: efn-4 encodes a member of the ephrin family of ligands that affects neuroblast migrations during closure of the ventral gastrulation cleft and subsequent epidermal morphogenesis, possibly functioning independently of EFN-1, EFN-2, EFN-3, and the VAB-1 receptor during morphogenesis; can interact with VAB-1 in vitro, and is expressed in neural and epidermal precursors at the 100-cell stage, in head neurons, pharyngeal cells, lateral and tail neurons, and in the ectoderm during epidermal enclosure.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order                                  

F56A6.2 Aff_F56A6.2 P W All gene names: hum-7; F56A6.2; 1B60; CE23779; NM_058354; WBGene00002040; WP:CE23779 WormBase description: hum-7 encodes a class IX unconventional myosin heavy chain that contains a myosin motor domain in the head region and zinc-finger and rhoGAP (rho GTPase activating protein) domains in the tail region; HUM-7 is required during embryogenesis for cytokinesis and normal cytoplasmic rearrangements, and by homology, may function in organization of the actin cytoskeleton; the precise expression and localization patterns of HUM-7 are not yet known. WormBase CDS description: myosin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56B3.2 Aff_F56B3.2 P W All gene names: F56B3.2; 4B518; CE29402; CE31545; WBGene00018928; WP:CE29402; WP:CE31545
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F56B3.4 Aff_F56B3.4 P W All gene names: skr-18; F56B3.4; 4B540; CE29969; CE37243; WBGene00004824; WP:CE29969; WP:CE37243 WormBase description: skr-18 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-18 has no known function in vivo, since skr-18(RNAi) animals are at least superficially normal.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S5                                 
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

F56C11.6 Aff_F56C11.6 P W All gene names: F56C11.6; 1A647; CE17905; CE33402; WBGene00018958; WP:CE17905; WP:CE33402 WormBase description: carboxylesterases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt herm                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster D, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F56F4.1 Aff_F56F4.1 P W All gene names: sdz-22; F56F4.1; 1G727; CE39020; WBGene00018978; WP:CE39020
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F56H1.3 Aff_C04F1.3 P W All gene names: F56H1.3; 1G306; CE17914; WBGene00018994; WP:CE17914
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

F56H6.2 Aff_F56H6.2 P W All gene names: F56H6.2; 1M871; CE28567; WBGene00010163; WP:CE28567
F57F4.2 Aff_F57F4.2 P W All gene names: F57F4.2; 5G868; CE11340; WBGene00019016; WP:CE11340
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

F57F4.3 Aff_F57F4.3 P W All gene names: gfi-1; F57F4.3; 5G882; CE11342; NM_072225; WBGene00001581; WP:CE11342 WormBase description: gfi-1 encodes a protein that contains 21 ET modules; interacts with unc-68 in yeast two-hybrid assays.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, list                            
                                              of genes in cluster C                                                              

F57G9.3 Aff_F57G9.3 P W All gene names: F57G9.3; 2M700; CE17919; WBGene00010219; WP:CE17919
F58D2.1 Aff_F58D2.1 P W All gene names: F58D2.1; 4N951; CE18782; WBGene00010240; WP:CE18782 WormBase description: C.elegans ZYG-11 protein like
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

F58E1.10 Aff_F58E1.10 P W All gene names: F58E1.10; 2B980; CE11390; WBGene00019041; WP:CE11390
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

F58E1.11 Aff_F58E1.11 P W All gene names: F58E1.11; 2B982; CE36171; WBGene00019042; WP:CE36171
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              daf-16 Resveratrol                                                                 

F58E1.12 Aff_F58E1.12 P W All gene names: F58E1.12; 2B984; CE11394; WBGene00019043; WP:CE11394
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Romagnolo et al 2002  Fig3b Unkown                                  

F58E1.14 Aff_F58E1.14 P W All gene names: fbxb-47; F58E1.14; 2B992; CE11398; WBGene00019045; WP:CE11398 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

F58E1.3 Aff_F58E1.3 P W All gene names: fbxb-26; F58E1.3; 2B971; CE11376; WBGene00019035; WP:CE11376 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F58E1.5 Aff_F58E1.5 P W All gene names: fbxb-17; F58E1.5; 2B965; CE11380; WBGene00019037; WP:CE11380 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F58E1.8 Aff_F58E1.8 P W All gene names: fbxb-18; F58E1.8; 2B974; CE11386; WBGene00019039; WP:CE11386 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains leucine-rich repeats.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F58E1.9 Aff_F58E1.9 P W All gene names: fbxb-19; F58E1.9; 2B976; CE11388; WBGene00019040; WP:CE11388 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F58E10.2 Aff_F58E10.2 P W All gene names: end-1; F58E10.2; 5O467; CE18784; NM_074074; WBGene00001310; WP:CE18784 WormBase description: end-1 encodes a GATA-like transcription factor sufficient to initiate endoderm differentiation and binds to the canonical target DNA sequence WGATAR with specificity similar to GATA-1 and D4 transcription factors; its expression bypasses requirement for maternal SKN-1 and the maternal Wnt signaling pathway in endoderm formation and it activates endoderm differentiation in isolated Xenopus ectoderm. WormBase CDS description: GATA family of transcription factors
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F58E10.7 Aff_F58E10.7 P W All gene names: F58E10.7; 5O473; CE18789; WBGene00010262; WP:CE18789
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Romagnolo et al 2002  Fig3b Unkown,                                
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

F58G4.4 Aff_F58G4.4 P W All gene names: sdz-23; F58G4.4; 5I575; CE07309; WBGene00019066; WP:CE07309
F58G6.1 Aff_F58G6.1 P W All gene names: F58G6.1; F58G6.1.1; F58G6.1.2; 4K410; CE03428; WBGene00010272; WP:CE03428 WormBase description: amphiphysin like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F59A1.10 Aff_F59A1.10 P W All gene names: F59A1.10; 5S141; CE18794; WBGene00010296; WP:CE18794
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen                                                                       

F59F5.8 Aff_F59F5.2 P W All gene names: F59F5.8; CE26716; WBGene00010346; WP:CE26716
F59G1.5 Aff_F59G1.5 P W All gene names: ptp-2; stp-1; F59G1.5; F59G1.5.1; F59G1.5.2; 2G211; CE02705; NM_062783; WBGene00004214; WP:CE02705 WormBase description: PROTEIN-TYROSINE PHOSPHATASE
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

H24O09.2 Aff_H24O09.B P W All gene names: fbxb-72; H24O09.2; 5B202; CE23825; WBGene00019243; WP:CE23825
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt males vs glp4 male enriched , Reinke et al                             
                                              2004, mixed sperm soma, Reinke et al 2004, wt herm vs                              
                                              wt herm enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster D, Reinke et al 2004, fem3 enriched genes                               

H28G03.1 Aff_H28G03.1 P W All gene names: H28G03.1; H28G03.1a.1; H28G03.1a.2; H28G03.1c.1; H28G03.1c.2; CE30079; CE30080; CE31190; WBGene00019249; WP:CE30079; WP:CE30080; WP:CE31190; XF837 WormBase description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

H38K22.1 Aff_H38K22.1 P W All gene names: evl-14; H38K22.1; 3F394; CE33526; NM_065464; WBGene00001352; WP:CE33526 WormBase description: evl-14 encodes a homolog of the yeast sister cohesion protein Pds5p that functions during both mitosis and meiosis and is implicated in the maintenance of sister chromatid cohesion in late prophase, and affects vulval morphology, meiotic germline development, embryonic and larval viability, fertility, and cell divisions in the germ line as well as in vulval and somatic gonad lineages; some of the defects, such as somatic gonad defects, are due at least partially to cell division defects.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

K02B12.2 Aff_K02B12.2 P W All gene names: K02B12.2; 1J88; CE06063; WBGene00010495; WP:CE06063
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, list                            
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

K02D3.1 Aff_K02D3.1 P W All gene names: K02D3.1; CE06069; WBGene00010504; WP:CE06069; XO323
K02E2.4 Aff_K02E2.4 P W All gene names: ins-35; K02E2.4; 5U845; CE18839; NM_075525; WBGene00002118; WP:CE18839 WormBase description: ins-35 encodes one of several insulin-related peptides.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

K02E7.9 Aff_K02E7.9 P W All gene names: K02E7.9; 2B350; CE11638; WBGene00019313; WP:CE11638
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

K05F6.1 Aff_K05F6.1 P W All gene names: fbxb-49; K05F6.1; 2B861; CE17159; WBGene00019412; WP:CE17159
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

K05F6.4 Aff_K05F6.4 P W All gene names: K05F6.4; 2B837; CE17162; WBGene00019415; WP:CE17162 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

K05F6.7 Aff_K05F6.7 P W All gene names: fbxb-54; K05F6.7; 2B846; CE28588; WBGene00019418; WP:CE28588
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

K05F6.9 Aff_K05F6.9 P W All gene names: fbxb-46; K05F6.9; 2B858; CE17167; WBGene00019420; WP:CE17167 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

K07F5.1 Aff_K07F5.1 P W All gene names: msp-81; K07F5.1; 4K600; NM_069358; WBGene00003467 WormBase description: msp-81 encodes a member of the major sperm protein family. WormBase CDS description: major sperm protein
K07F5.2 Aff_K07F5.2 P W All gene names: msp-10; K07F5.2; 4K603; CE03853; NM_069359; WBGene00003425; WP:CE03853 WormBase description: msp-10 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

K08B12.2 Aff_K08B12.2 P W All gene names: K08B12.2; 5G731; CE29814; CE30817; WBGene00019521; WP:CE29814; WP:CE30817
K08B5.1 Aff_K08B5.1 P W All gene names: K08B5.1; CE35740; WBGene00019518; WP:CE35740; XR175
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K08D10.8 Aff_K08D10.8 P W All gene names: K08D10.8; K08D10.8.1; K08D10.8.2; 4E929; CE07360; WBGene00019531; WP:CE07360 WormBase description: K08D10.7 encodes a homolog of human scramblase (PLSCR1; OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis; a close paralog of K08D10.8 is K08D10.7, and other paralogs include F46A8.9, F46A8.10, and Y50E8A.9> Exposure of phosphatidylserine on the surface of apoptotic cells occurs because of a phospholipid scramblase and inactivation of an aminophospolipid translocase that would normally keep the PS on the interior of the cell; by virtue of its similarity to mammalian scramblase, K08D10.8 may promote clearage of apoptotic cells by phagocytosis.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

K08F4.8 Aff_K08F4.8 P W All gene names: msp-38; K08F4.8; 4K908; CE06156; NM_069448; WBGene00003434; WP:CE06156 WormBase description: msp-38 encodes a member of the major sperm protein family; msp-38 has a C. briggsae homolog as predicted by the Wobble Bulk Aware Bulk Aligner (WABA). WormBase CDS description: major sperm protein MSP-38
K09C4.8 Aff_K09C4.8 P W All gene names: sul-1; tag-37; K09C4.8; CE04736; NM_076159; WBGene00006308; WP:CE04736; XD886 WormBase description: sul-1 encodes a member of the sulfatase family. WormBase CDS description: sulfatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT, Wang et al 2003  S4 TransientList, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K09C6.6 Aff_K09C6.6 P W All gene names: K09C6.6; 5B323; CE11998; WBGene00019560; WP:CE11998
K09F6.8 Aff_K09F6.8 P W All gene names: K09F6.8; 2C584; CE12038; WBGene00019591; WP:CE12038
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K09H9.7 Aff_K09H9.7 P W All gene names: K09H9.7; 1D718; CE39596; WBGene00019598; WP:CE39596
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

K12B6.1 Aff_K12B6.1 P W All gene names: K12B6.1; 5G787; CE12164; WBGene00019666; WP:CE12164
K12H6.11 Aff_K12H6.11 P W All gene names: K12H6.11; 2D109; CE20014; WBGene00019690; WP:CE20014
K12H6.7 Aff_K12H6.7 P W All gene names: K12H6.7; 2D126; CE20010; WBGene00019687; WP:CE20010
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M01D1.1 Aff_M01D1.1 P W All gene names: str-148; M01D1.1; 2B337; CE21071; NM_061497; WBGene00006195; WP:CE21071 WormBase description: 7TM chemoreceptor, str family
M01D1.3 Aff_F45D11_40.A, Aff_M01D1.3 P W All gene names: M01D1.3; 2B314; CE23871; WBGene00019700; WP:CE23871
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M01D1.8 Aff_M01D1.8 P W All gene names: fbxb-41; M01D1.8; 2B332; CE12256; WBGene00019703; WP:CE12256 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

M01D1.9 Aff_M01D1.9 P W All gene names: fbxb-40; M01D1.9; 2B340; CE12258; WBGene00019704; WP:CE12258 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
M01D7.1 Aff_M01D7.1 P W All gene names: M01D7.1; 1C330; CE12260; WBGene00019706; WP:CE12260 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

M01E5.6 Aff_M01E5.6 P W All gene names: M01E5.6; 1N890; CE12286; WBGene00010808; WP:CE12286
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

M05D6.7 Aff_M05D6.7 P W All gene names: gbh-2; M05D6.7; 2I777; CE35896; NM_063392; WBGene00001523; WP:CE35896 WormBase description: gbh-2 encodes an ortholog of human gamma butyrobetaine hydroxilase 2 involved in carnitine biosynthesis; RNA interference of gbh-2 results in malformation of the gonad and accumulation of fat in the pseudocoelomic cavity and in intestinal cells; the GBH-2-GFP fusion protein is predominantly expressed in intestinal cells from early embryogenesis. WormBase CDS description: gamma-butyrobetaine,2-oxoglutarate dioxygenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M110.4 Aff_M110.4 P W All gene names: ifg-1; M110.4; 2I511; CE02277; CE35745; WBGene00002066; WP:CE02277; WP:CE35745 WormBase description: ifg-1 encodes, by alternative splicing, two orthologs of the translational initiation factor eIF4 (eIF-4) gamma.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

M117.5 Aff_M117.5 P W All gene names: fbxb-4; M117.5; 4M595; CE18086; WBGene00010921; WP:CE18086 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

M151.5 Aff_M151.5 P W All gene names: fbxb-31; M151.5; 2D922; CE12442; WBGene00019797; WP:CE12442
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

M151.8 Aff_M151.6 P W All gene names: fbxb-33; M151.8; CE38623; WBGene00044314; WP:CE38623
M153.1 Aff_M153.1 P W All gene names: M153.1; CE03511; WBGene00010924; WP:CE03511; XM767 WormBase description: pyrroline-5-carboxylate reductase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster B,                                
                                              Romagnolo et al 2002  Fig3b Metabolism, Wang et al 2003                            
                                               S3  genes pass one-way ANOVA, Wang et al 2003  S4                                 
                                              genes pass two-wayANOVA P0, Wang et al 2003  S4                                    
                                              LateList                                                                           

R02C2.1 Aff_R02C2.1 P W All gene names: R02C2.1; 5A716; CE33150; WBGene00019814; WP:CE33150 WormBase description: protein kinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R04B3.2 Aff_R04B3.2 P W All gene names: R04B3.2; CE28745; WBGene00019867; WP:CE28745; XD90 WormBase description: The R04B3.2 gene encodes an ortholog of the human gene LYSOSOMAL GLYCOSYLASPARAGINASE (AGA; OMIM:208400), which when mutated leads to aspartylglucosaminuria (OMIM:208400). WormBase CDS description: glycosylasparaginase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R04B5.5 Aff_R04B5.5 P W All gene names: R04B5.5; 5K569; CE06215; WBGene00011003; WP:CE06215 WormBase description: sorbitol dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

R06A4.6 Aff_R06A4.6 P W All gene names: sdz-26; R06A4.6; 2O669; CE18113; WBGene00011049; WP:CE18113 WormBase description: similar to PES-10
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

R06C7.3 Aff_R06C7.3 P W All gene names: CeCRMP/DHP-1; dhp-1; R06C7.3; R06C7.3.1; R06C7.3.2; 1H816; CE30293; NM_170899; WBGene00000963; WP:CE30293 WormBase description: The R06C7.3 gene encodes a homolog of the human gene DPYS, which when mutated leads to dihydropyrimidinuria (OMIM:222748). WormBase CDS description: dihydropyrimidinase
R06F6.6 Aff_R06F6.6 P W All gene names: R06F6.6; 2L101; CE01622; WBGene00011069; WP:CE01622 WormBase description: Homeobox domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R07B5.9 Aff_R07B5.8 P W All gene names: R07B5.9; CE31575; WBGene00011086; WP:CE31575
R07C3.6 Aff_R07C3.6 P W All gene names: R07C3.6; 2B213; CE12532; WBGene00019922; WP:CE12532
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R07C3.7 Aff_R07C3.7 P W All gene names: R07C3.7; 2B207; CE12534; WBGene00019923; WP:CE12534
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R07C3.9 Aff_R07C3.9 P W All gene names: R07C3.9; 2B203; CE12538; WBGene00019925; WP:CE12538
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R07H5.4 Aff_R07H5.4 P W All gene names: sdz-27; R07H5.4; 4L953; CE12556; WBGene00011124; WP:CE12556
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, herm soma enriched genes, Reinke et                             
                                              al 2004, fem3 enriched genes, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S6 removed genes                              
                                              of contamination                                                                   

R07H5.9 Aff_R07H5.9 P W All gene names: R07H5.9; 4L975; CE39953; WBGene00011129; WP:CE39953
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R08B4.2 Aff_R08B4.2 P W All gene names: alr-1; sns-10; R08B4.2; CE03536; WBGene00011138; WBGene00044330; WP:CE03536; XL742 WormBase description: homeobox protein (otd subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

R08E5.3 Aff_R08E5.3 P W All gene names: R08E5.3; R08E5.3.1; R08E5.3.2; 5E251; CE12576; WBGene00019963; WP:CE12576
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R10D12.1 Aff_R10D12.1 P W All gene names: R10D12.1; 5O414; CE12672; WBGene00011185; WP:CE12672 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Shen et al 2005  T1 hif-1 depend                                   
                                              hypoxia, Wang et al 2003  S3  genes pass one-way ANOVA,                            
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R11A5.3 Aff_R11A5.3 P W All gene names: R11A5.3; 1I438; CE12726; WBGene00011231; WP:CE12726
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R13A5.5 Aff_R13A5.5 P W All gene names: ceh-13; R13A5.5; 3I647; CE28767; NM_066254; WBGene00000437; WP:CE28767 WormBase description: a homolog of Hox genes of labial/Hox1 type; affects viability, body shape and anterior patterning during embryogenesis, interacts genetically with hox genes; and is expressed in A, D, E and MS lineages in the early embryo, and in the anterior dorsal hypodermal cells, anterior body wall muscle cells, and in the cells of the prospective ventral nerve cord at the comma stage; and in the ventral nerve cord and and ventral and dorsal hypodermal cells in L1 larvae.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S6 removed genes of                                      
                                              contamination, Wang et al 2003  S7 SAGE genes in the                               
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

R148.4 Aff_R148.4 P W All gene names: R148.4; 3E261; CE12854; WBGene00020103; WP:CE12854
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, Fig2b shared                                   
                                              gemlines, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

R17.1 Aff_R17.1 P W All gene names: fbxb-85; R17.1; 3L936; CE16314; WBGene00011267; WP:CE16314 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R52.1 Aff_R52.1 P W All gene names: bath-16; sdz-28; R52.1; 2C421; CE12824; WBGene00020073; WP:CE12824
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R52.8 Aff_R52.8 P W All gene names: math-36; R52.8; 2C404; CE12838; WBGene00020079; WP:CE12838
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

T01C4.2 Aff_T01C4.2 P W All gene names: odr-2; T01C4.2; 5H593; CE28348; CE28349; CE28350; WBGene00003849; WP:CE28348; WP:CE28349; WP:CE28350 WormBase description: odr-2 encodes three isoforms of a predicted membrane-associated protein related to the Ly-6 (leukocyte antigen-6) family of GPI (glycosylated phosphatidylinositol)-linked signaling proteins; ODR-2 activity is required for proper functioning of the AWC olfactory neurons and thus for chemotaxis in response to AWC-sensed odorants; ODR-2 is expressed at high levels in sensory neurons, motor neurons, and interneurons, where it appears to be enriched in axons.
T01H10.8 Aff_T01H10.8 P W All gene names: T01H10.8; CE03607; WBGene00011361; WP:CE03607; XM748 WormBase description: Yeast hypothetical protein YCR32 like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T02G6.6 Aff_T02G6.6 P W All gene names: T02G6.6; 1M413; CE18177; WBGene00011389; WP:CE18177
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T03D8.6 Aff_T03D8.6 P W All gene names: T03D8.6; 5V288; CE37271; WBGene00011393; WP:CE37271 WormBase description: Gamma-glutamyltranspeptidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T04B8.3 Aff_T04B8.3 P W All gene names: T04B8.3; 2A919; CE39176; WBGene00020205; WP:CE39176
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

T04D3.2 Aff_T04D3.2 P W All gene names: sdz-30; T04D3.2; 1N899; CE13155; WBGene00011432; WP:CE13155
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T05B4.2 Aff_T05B4.2 P W All gene names: nhr-57; T05B4.2; 5E613; CE13195; NM_071752; WBGene00003647; WP:CE13195 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

T05D4.2 Aff_T05D4.2 P W All gene names: T05D4.2; 3O650; CE16342; WBGene00011475; WP:CE16342
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

T05E7.1 Aff_T05E7.1 P W All gene names: T05E7.1; 1G781; CE13231; WBGene00020258; WP:CE13231
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, herm soma enriched                               
                                              genes, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

T05E7.5 Aff_T05E7.5 P W All gene names: T05E7.5; 1G778; CE13239; NM_059386; WBGene00020261; WP:CE13239
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T05H10.3 Aff_T05H10.3 P W All gene names: T05H10.3; 2I340; CE01640; WBGene00011508; WP:CE01640
T06C10.4 Aff_T06C10.4 P W All gene names: flp-10; T06C10.4; T06C10.4.1; T06C10.4.2; 4I635; CE04902; NM_068905; WBGene00001453; WP:CE04902
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T06E6.13 Aff_T06E6.13 P W All gene names: fbxa-104; T06E6.13; 5P900; CE18215; WBGene00011542; WP:CE18215
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T07D1.4 Aff_T07D1.4 P W All gene names: fox-1; T07D1.4; T07D1.4.1; T07D1.4.2; CE25105; NM_076045; WBGene00001484; WP:CE25105; XD66 WormBase description: fox-1 encodes an RNA-binding protein of the RNA recognition motif (RRM) superfamily of ribonucleic acid binding proteins; during C. elegans development, FOX-1 functions redundantly with other numerator elements to effect proper dosage compensation in the early embryo; in influencing dosage compensation, FOX-1 likely acts via post-transcriptional regulation of xol-1 mRNA levels; in addition to its role in dosage compensation, fox-1 activity is also required for normal male mating behavior; Western analysis and lacZ reporter constructs indicate that FOX-1 is expressed throughout the life cycle, beginning at the 18-20-cell stage of embryogenesis and continuing on through larval stages and into adult hermaphrodites and males; while early embryonic expression of fox-1 is ubiquitous, postembryonic expression is limited to a subset of head and tail neurons. WormBase CDS description: RNA-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

T07D3.7 Aff_T07D3.7 P W All gene names: alg-2; T07D3.7; TO7D3.7; 2B167; CE13367; CE32063; NM_061436; NM_182192; WBGene00000106; WP:CE13367; WP:CE32063 WormBase description: alg-2 encodes a PAZ and PIWI-domain containing protein that is a member of the highly conserved eukaryotic RDE-1/AGO1/PIWI family of proteins that regulate posttranscriptional gene silencing (PTGS); ALG-2 functions with ALG-1 to control specific developmental timing events by positively regulating expression of small temporal RNAs (stRNAs) encoded by lin-4 and let-7; ALG-2 and ALG-1 are also required for RNAi in the germline, although they are not required for RNAi in the soma.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T07E3.4 Aff_T07E3.4 P W All gene names: T07E3.4; T07E3.4a.1; T07E3.4a.2; T07E3.4b.1; T07E3.4b.2; 3H989; CE01385; CE32717; WBGene00020315; WP:CE01385; WP:CE32717 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

T08B1.6 Aff_T08B1.6 P W All gene names: T08B1.6; 5C451; CE27444; WBGene00020343; WP:CE27444 WormBase description: long-chain fatty-acid CoA ligase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Metabolism, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

T08E11.5 Aff_T08E11.5 P W All gene names: T08E11.5; 2C113; CE33448; WBGene00020361; WP:CE33448
T08E11.6 Aff_T08E11.6 P W All gene names: fbxb-10; T08E11.6; 2C104; CE19573; WBGene00020362; WP:CE19573 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

T08G5.3 Aff_T08G5.3 P W All gene names: T08G5.3; 5O506; CE18945; WBGene00011624; WP:CE18945
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T10B10.3 Aff_T10B10.3 P W All gene names: T10B10.3; T10B10.3.1; T10B10.3.2; CE06401; WBGene00011680; WP:CE06401; XP798
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T10C6.10 Aff_T10C6.10 P W All gene names: T10C6.10; 5Q517; CE16385; WBGene00011691; WP:CE16385 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated                                                      

T10C6.12 Aff_T10C6.12 P W All gene names: his-3; T10C6.12; 5Q521; CE04501; NM_074631; WBGene00001877; WP:CE04501 WormBase description: his-3 encodes an H2A histone; by homology, HIS-3 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-3 is a replication-dependent histone locus that resides in the HIS1 cluster on chromosome V. WormBase CDS description: histone H2A
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T10C6.14 Aff_T10C6.14 P W All gene names: his-1; T10C6.14; 5Q523; CE03252; NM_074633; WBGene00001875; WP:CE03252 WormBase description: his-1 encodes an H4 histone; his-1 is contained within the histone gene cluster HIS1; transcript analysis suggests that it encodes the major class of H4 transcripts. WormBase CDS description: histone H4
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

T11A5.5 Aff_T11A5.5 P W All gene names: sdz-31; T11A5.5; 5K359; CE06411; WBGene00011704; WP:CE06411
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T14G8.2 Aff_T14G8.2 P W All gene names: T14G8.2; CE03658; WBGene00011770; WP:CE03658; XN477 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
T15B7.5 Aff_T15B7.5 P W All gene names: col-141; T15B7.5; 5H311; CE13656; NM_072334; WBGene00000714; WP:CE13656 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T15H9.6 Aff_T15H9.6 P W All gene names: T15H9.6; 2J898; CE01669; WBGene00011791; WP:CE01669 WormBase description: poly(A) polymerase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T16A1.8 Aff_T16A1.8 P W All gene names: fbxb-37; T16A1.8; 2C376; CE13716; WBGene00020537; WP:CE13716 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

T17A3.4 Aff_T17A3.4 P W All gene names: fbxb-82; T17A3.4; 3A756; CE19582; WBGene00020542; WP:CE19582 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, list of                             
                                              genes in cluster E                                                                 

T17A3.6 Aff_T17A3.6 P W All gene names: fbxb-83; T17A3.6; 3A758; CE29343; WBGene00020543; WP:CE29343
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

T17A3.7 Aff_T17A3.7 P W All gene names: fbxb-84; T17A3.7; 3A764; CE19584; NM_064756; WBGene00020544; WP:CE19584 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T19C3.5 Aff_T19C3.5 P W All gene names: T19C3.5; 3B242; CE29347; WBGene00020563; WP:CE29347
T19C4.1 Aff_T19C4.1 P W All gene names: T19C4.1; 5L629; CE06465; WBGene00011838; WP:CE06465
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S3  genes pass one-way ANOVA, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

T20B12.6 Aff_T20B12.6 P W All gene names: mml-1; T20B12.6; 3I460; CE30186; CE32727; MYC; WBGene00003378; WP:CE30186; WP:CE32727; mio
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T20D4.15 Aff_T20D4.15 P W All gene names: T20D4.15; 5D868; CE13806; WBGene00020620; WP:CE13806
T20G5.4 Aff_T20G5.4 P W All gene names: T20G5.4; 3L303; CE28844; WBGene00011868; WP:CE28844 WormBase description: Putative membrane protein
T22B2.1 Aff_T22B2.1 P W All gene names: T22B2.1; CE13928; WBGene00020665; WP:CE13928; XE545
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T22F7.5 Aff_T22F7.3 P W All gene names: T22F7.5; 3B132; CE30305; WBGene00020704; WP:CE30305
T22H2.4 Aff_T22H2.4 P W All gene names: T22H2.4; 1M288; CE14002; WBGene00011934; WP:CE14002
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T22H6.2 Aff_T22H6.2 P W All gene names: T22H6.2; T22H6.2a.1; T22H6.2a.2; CE03697; CE26824; WBGene00011938; WP:CE03697; WP:CE26824; XN405 WormBase description: 1-pyroline-5-carboxylate synthetase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

T24B8.6 Aff_T24B8.6 P W All gene names: hlh-3; T24B8.6; 2J377; CE03714; NM_063537; WBGene00001950; WP:CE03714 WormBase description: hlh-3 encodes a basic helix-loop-helix transcription factor homologous to Drosophila Achaete-scute; in vitro, HLH-3 can heterodimerize, and bind an E-box-containing probe, with HLH-2, the C. elegans E/daughterless ortholog with which it is coexpressed in the nuclei of embryonic neuronal precursors. WormBase CDS description: helix-loop-helix protein
T24C2.3 Aff_T24C2.3 P W All gene names: T24C2.3; CE03717; WBGene00011982; WP:CE03717; XP161
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T24C4.2 Aff_T24C4.2 P W All gene names: T24C4.2; 3B482; CE19593; WBGene00020758; WP:CE19593
T25G12.8 Aff_T25G12.8 P W All gene names: T25G12.8; CE07545; WBGene00020814; WP:CE07545; XR852
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 TransientList,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T26E3.5 Aff_T26E3.5 P W All gene names: T26E3.5; 1N254; CE14192; WBGene00012038; WP:CE14192 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

T26E3.8 Aff_T26E3.8 P W All gene names: T26E3.8; 1N250; CE21207; WBGene00012041; WP:CE21207
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T26H2.1 Aff_T26H2.1 P W All gene names: fbxb-1; T26H2.1; 5T711; CE16487; WBGene00012063; WP:CE16487 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
T26H2.2 Aff_T26H2.2 P W All gene names: fbxb-115; T26H2.2; 5T708; CE16488; WBGene00012064; WP:CE16488 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T26H2.3 Aff_T26H2.3 P W All gene names: fbxb-2; T26H2.3; 5T706; CE16489; WBGene00012065; WP:CE16489 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T26H2.4 Aff_T26H2.4 P W All gene names: fbxb-116; T26H2.4; 5T705; CE16490; WBGene00012066; WP:CE16490 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T26H2.7 Aff_T26H2.7 P W All gene names: T26H2.7; 5T697; CE16492; WBGene00012068; WP:CE16492
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T27A10.3 Aff_T27A10.3 P W All gene names: ckc-1; T27A10.3; T27A10.3a.1; T27A10.3a.2; CE07553; CE33710; WBGene00000515; WP:CE07553; WP:CE33710; XE193 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Early genes,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T27C4.4 Aff_T27C4.4 P W All gene names: egr-1; T27C4.4; 5E189; CE21211; CE21212; CE33330; CE33331; NM_071630; NM_071631; NM_182323; NM_182324; WBGene00001219; WP:CE21211; WP:CE21212; WP:CE33330; WP:CE33331 WormBase description: egr-1 encodes a homolog of human MTA1, part of an ATP-dependent complex with nucleosome remodelling and histone deacetylation activities that may promote tumor metastasis; in conjunction with its paralog egl-27, egr-1 is required for proper organization in all parts of the embryo, and for the embryonic expression of hlh-8.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

T27D12.1 Aff_T27D12.1 P W All gene names: T27D12.1; T27D12.1.1; T27D12.1.2; T27D12.1.3; 2M135; CE06516; WBGene00012085; WP:CE06516 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

T27E4.1 Aff_T27E4.1 P W All gene names: T27E4.1; 5J573; CE29357; WBGene00020861; WP:CE29357
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T27E4.9 Aff_T27E4.3 P W All gene names: hsp-16.49; T27E4.9; 5J570; NM_072955; WBGene00002020 WormBase description: hsp-16.49 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.48; HSP-16.49 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein HSP16-48
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T27E9.6 Aff_T27E9.6 P W All gene names: T27E9.6; 3O564; CE34099; WBGene00012096; WP:CE34099
W02H5.8 Aff_W02H5_1932.J P W All gene names: W02H5.8; W02H5.A; W02H5_1932.A; 5D126; CE21240; WBGene00020962; WP:CE21240
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

W03D2.1 Aff_W03D2.1 P W All gene names: pqn-75; W03D2.1; 4E841; CE14506; CE28501; CE31729; NM_171311; NM_171312; NM_171903; WBGene00004157; WP:CE14506; WP:CE28501; WP:CE31729 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
W04A8.3 Aff_W04A8.3 P W All gene names: W04A8.3; 1O436; CE16537; WBGene00012238; WP:CE16537
W04A8.5 Aff_W04A8.5 P W All gene names: W04A8.5; 1O442; CE16539; WBGene00012240; WP:CE16539 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

W04D2.1 Aff_W04D2.1 P W All gene names: atn-1; W04D2.1; 5M963; CE06539; CE21256; NM_073726; NM_073727; WBGene00000228; WP:CE06539; WP:CE21256 WormBase description: atn-1 encodes an alpha-actinin homolog.
W05H7.4 Aff_W05H7.4 P W All gene names: W05H7.4; CE33719; CE35046; CE35047; CE38431; CE38432; WBGene00021047; WP:CE33719; WP:CE35046; WP:CE35047; WP:CE38431; WP:CE38432; XC60
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W05H9.3 Aff_W05H9.3 P W All gene names: W05H9.3; W05H9.3.1; W05H9.3.2; CE05038; WBGene00021050; WP:CE05038; XG873
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

W06D4.5 Aff_T06D10.C P W All gene names: tag-157; W06D4.5; 1J640; CE16547; WBGene00006503; WP:CE16547 WormBase description: PhoX homologous domain, present in p47phox and p40phox.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

W08G11.3 Aff_W08G11.3 P W All gene names: W08G11.3; 5Q849; CE39423; CE39424; WBGene00012347; WP:CE39423; WP:CE39424
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

W09D6.4 Aff_W09D6.4 P W All gene names: W09D6.4; 3M169; CE19018; WBGene00012357; WP:CE19018
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

W09G12.1 Aff_W09G12.1 P W All gene names: dsl-2; W09G12.1; 4B956; CE23182; NM_067651; WBGene00001104; WP:CE23182
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E                                             

W09G12.4 Aff_W09G12.4 P W All gene names: dsl-1; W09G12.4; 4B960; CE18343; NM_067653; WBGene00001103; WP:CE18343
W10C8.2 Aff_W03D8.4, Aff_W10C8.2 P W All gene names: pop-1; sys-2; W10C8.2; 1D392; CE26031; NM_058652; WBGene00004077; WP:CE26031 WormBase description: pop-1 encodes an HMG box-containing protein that is the sole C. elegans member of the TCF/LEF family of transcription factors; in C. elegans, POP-1 functions as a component of the canonical and noncanonical Wnt signaling pathways that are required for cell migrations and binary cell fate decisions associated with asymmetric cell division, respectively; in yeast two-hybrid assays, the POP-1 N-terminal beta-catenin binding domain interacts with BAR-1/beta-catenin as well as with the more divergent beta-catenin, SYS-1; when coexpressed with SYS-1, POP-1 is able to activate transcription from a promoter with TCF binding sites; during development, maternally provided POP-1 is first detected in the nuclei of maturing oocytes and then in nearly all cells of the early embryo; in sister blastomeres in the early embryo, POP-1 is detected at lower levels in posterior blastomeres, such as E and P3, than in corresponding anterior blastomeres, MS and C; in later developmental stages, POP-1 is detected in a subset of tissues including hypodermal seam cells, gonadal precursors, and the developing vulva; in the vulva, POP-1 also exhibits an asymmetric staining pattern, with sister cells showing high or low levels of POP-1 depending upon their orientation along the anterior/posterior axis of the vulva.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E                                                                          

Y105C5B.13 Aff_Y105C5.KK, Aff_Y105C5.LL P W All gene names: skr-10; Y105C5B.13; 4Q711; CE24062; NM_070501; WBGene00004816; WP:CE24062 WormBase description: skr-10 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-10 is required for posterior body morphogenesis, embryonic and larval development, and cell proliferation; SKR-10 is expressed in the tip and end regions of the intestine and can interact in vivo with CUL-1 and CUL-2, C. elegans cullin homologs.
Y106G6D.1 Aff_Y106G6D.1 P W All gene names: Y106G6D.1; 1K682; CE19299; WBGene00013698; WP:CE19299
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y106G6D.2 Aff_Y106G6D.2 P W All gene names: Y106G6D.2; 1K687; CE19300; WBGene00013699; WP:CE19300
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y106G6H.4 Aff_Y106G6H.4 P W All gene names: Y106G6H.4; 1L14; CE20414; WBGene00013717; WP:CE20414
Y106G6H.9 Aff_Y106G6H.9 P W All gene names: Y106G6H.9; 1L30; CE20419; WBGene00013721; WP:CE20419 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

Y113G7B.8 Aff_Y113G7B.F P W All gene names: fbxb-59; Y113G7B.8; 5U674; CE23290; WBGene00013759; WP:CE23290 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Y116A8B.1 Aff_Y116A8B.1 P W All gene names: Y116A8B.1; 4S161; CE16679; WBGene00013779; WP:CE16679
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y116A8C.19 Aff_Y116A8A.G P W All gene names: Y116A8A.G; Y116A8C.19; 4R982; CE23328; WBGene00013796; WP:CE23328
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y116A8C.20 Aff_Y116A8A.F P W All gene names: Y116A8A.F; Y116A8C.20; 4R985; CE23329; WBGene00013797; WP:CE23329
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y25C1A.6 Aff_Y25C1A.I P W All gene names: Y25C1A.6; Y25C1A.6.1; Y25C1A.6.2; Y25C1A.I; CE21473; WBGene00021293; WP:CE21473
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y37A1B.5 Aff_Y37A1B.5 P W All gene names: Y37A1B.5; 4O819; CE19075; WBGene00012538; WP:CE19075
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y38F2AL.1 Aff_Y38F2A_5743.J P W All gene names: Y38F2AL.1; 4D91; CE39822; WBGene00021415; WP:CE39822 WormBase description: Y38F2AL.1 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; Y38F2AL.1 is worm-specific, with obvious homologs only in C. elegans; Y38F2AL.1 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

Y38H6C.10 Aff_Y38H6C.10 P W All gene names: Y38H6C.10; 5U988; CE19104; WBGene00012623; WP:CE19104 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Y38H6C.11 Aff_Y38H6C.11 P W All gene names: Y38H6C.11; 5U995; CE19105; WBGene00012624; WP:CE19105 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes                                                                              

Y39A1A.16 Aff_Y39A1A.16 P W All gene names: Y39A1A.16; 3L769; CE19136; WBGene00012654; WP:CE19136 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y39B6A.11 Aff_Y39B6.V P W All gene names: Y39B6A.11; Y39B6B.V; 5T605; CE21697; WBGene00012673; WP:CE21697
Y39G10AR.10 Aff_Y39G10A_246.A P W All gene names: Y39G10AR.10; Y39G10AR.10.1; Y39G10AR.10.2; 1C869; CE26989; WBGene00021468; WP:CE26989
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

Y40B10B.2 Aff_Y40B10B.A P W All gene names: srj-15; Y40B10B.2; Y40B10B.A; 5C440; CE21799; NM_071138; WBGene00005603; WP:CE21799 WormBase description: 7TM chemoreceptor, srj family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y43F11A.1 Aff_Y43F11.A P W All gene names: Y43F11A.1; 2M402; CE21916; WBGene00012841; WP:CE21916
Y44A6C.2 Aff_Y44A6C.2 P W All gene names: Y44A6C.2; 5V193; CE18389; WBGene00012851; WP:CE18389
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

Y46E12A.4 Aff_Y119D3_463.A P W
Y46H3A.1 Aff_Y32G9B_366.D P W All gene names: srt-42; Y46H3A.1; 5C285; CE35804; CE38004; WBGene00021599; WP:CE35804; WP:CE38004 WormBase description: 7TM chemoreceptor, srt family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y46H3A.2 Aff_Y46H3A.E P W All gene names: hsp-16.41; HSP16-41; Y46H3A.2; Y46H3A.E; 5C283; CE22003; NM_071107; WBGene00002018; WP:CE22003 WormBase description: hsp-16.41 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; an hsp-16.41 reporter fusion, expressed broadly but strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; expression is detectable in somatic tissues in post-gastrulation embryos, all larval stages, and in adults; HSP-16.41 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Link et al 2003  T3 Abeta highly                                    
                                              induced, Link et al 2003  T2 Abeta induced, Reinke et                              
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y46H3A.3 Aff_Y46H3A.D P W All gene names: hsp-16.2; Y46H3A.3; Y46H3A.D; 5C282; CE22002; NM_071106; WBGene00002016; WP:CE22002 WormBase description: hsp-16.2 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; hsp-16.2 expression, strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; HSP-16.2 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease; HSP-16.2 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, daf-2 differentially                             
                                              expressed , Link et al 2003  T3 Abeta highly induced,                              
                                              Link et al 2003  T2 Abeta induced, Murphy et al 2003                               
                                              Fig2 Class1 elongate lifespan, Romagnolo et al 2002                                
                                              Fig2a heat shock, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

Y47H9B.2 Aff_Y47H9B.1 P W All gene names: Y47H9B.2; 1M339; CE34123; WBGene00012946; WP:CE34123
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

Y48G1C.6 Aff_Y48G1B_55.E P W All gene names: Y48G1C.6; 1A558; CE22175; WBGene00021679; WP:CE22175
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y49F6B.5 Aff_Y49F6B_110.F P W All gene names: sdz-32; Y49F6B.5; 2D765; CE25339; WBGene00021717; WP:CE25339
Y50D4B.2 Aff_Y50D4B_10.A P W All gene names: Y50D4B.2; 5B579; CE24401; WBGene00021741; WP:CE24401
Y51B9A.3 Aff_Y51B9A.3 P W All gene names: Y51B9A.3; 2J696; CE19213; WBGene00013085; WP:CE19213
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt males vs glp4 male enriched , Reinke et al                             
                                              2004, mixed sperm soma, Reinke et al 2004, wt herm vs                              
                                              wt herm enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster D, Reinke et al 2004, fem3 enriched genes                               

Y51H7BR.2 Aff_Y51H7B_6.B P W All gene names: fbxb-43; Y51H7BR.2; 2B827; CE22356; WBGene00021774; WP:CE22356
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes                                                   

Y53C10A.5 Aff_Y53C10A.B P W All gene names: Y53C10A.5; 1M593; CE22373; WBGene00013136; WP:CE22373
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y54E10A.15 Aff_Y54E10A_156.A P W All gene names: cdt-1; Y54E10A.15; 1D792; CE22447; NM_058725; NM_182086; WBGene00000413; WP:CE22447
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, herm                              
                                              soma enriched genes                                                                

Y55B1AR.1 Aff_Y55B1A_120.D P W All gene names: lec-6; Y55B1AR.1; Y55B1AR.1.1; Y55B1AR.1.2; 3B218; CE22493; NM_064814; WBGene00002269; WP:CE22493 WormBase description: lec-6 encodes a 'proto' type galectin (beta-galactosyl-binding lectin) containing a single carbohydrate recognition domain; by homology, LEC-6 may play roles in cell adhesion and aggregation, proliferation, or programmed cell death, but as loss of lec-6 activity via large-scale RNAi screens does not result in obvious abnormalities, the precise role of LEC-6 in C. elegans development and/or behavior is not yet known; in vitro, LEC-6 can interact with several types of blood group precursor oligosaccharides and gangliosides.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, IVb male soma enriched genes                                                 

Y55B1BR.3 Aff_Y55B1B_119.B P W All gene names: Y55B1BR.3; 3B49; CE24463; WBGene00021913; WP:CE24463
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

Y55F3AM.15 Aff_Y55F3A_739.A P W All gene names: csn-4; Y55F3AM.15; 4B832; CE25482; NM_067633; WBGene00000816; WP:CE25482 WormBase description: csn-4 encodes a protein with similarity to human COP9 proteasome subunit 4.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

Y55F3BR.8 Aff_Y55F3A_747.E P W All gene names: Y55F3BR.8; 4B602; CE31657; CE37730; WBGene00021945; WP:CE31657; WP:CE37730
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, Romagnolo et al 2002  Fig3b Unkown,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y56A3A.15 Aff_Y56A3A.M P W All gene names: fbxb-24; Y56A3A.15; Y56A3A.G; 3M999; CE22582; WBGene00013234; WP:CE22582 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y57A10C.1 Aff_Y57A10C.1 P W All gene names: Y57A10C.1; 2M702; CE22632; WBGene00013280; WP:CE22632
Y57G11C.8 Aff_Y57G11C.8 P W All gene names: Y57G11C.8; 4P547; CE39974; WBGene00013306; WP:CE39974
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

Y57G7A.2 Aff_Y57G7A.2 P W All gene names: Y57G7A.2; 2B587; CE19631; WBGene00021966; WP:CE19631
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y58G8A.4 Aff_Y58G8A_208.A P W All gene names: Y58G8A.4; 5A756; CE33345; CE36962; WBGene00021983; WP:CE33345; WP:CE36962
Y60A3A.1 Aff_Y60A3.W P W All gene names: unc-51; Y60A3.W; Y60A3A.1; Y60A3A.1.1; Y60A3A.1.2; 5U466; CE24516; NM_075468; WBGene00006786; WP:CE24516 WormBase description: The unc-51 gene encodes an activity required for both axonogenesis and sex myoblast migration. WormBase CDS description: serine/threonine protein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y69A2AR.29 Aff_Y69A2A_7278.I P W All gene names: ngn-1; Y69A2AR.29; 4D392; CE26560; NM_067835; WBGene00003595; WP:CE26560 WormBase description: ngn-1 encodes a member of the neurogenein family that is required for axonal guidance and connectivity of a subset of neurons, and also affects locomotion.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

Y70D2A.2 Aff_Y70D2.A P W All gene names: Y70D2.A; Y70D2A.2; CE34134; WBGene00013497; WP:CE34134; XP520
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y71A12B.3 Aff_Y71A12B.M P W All gene names: Y71A12B.3; 1O485; WBGene00013501
Y71F9B.8 Aff_Y71F9B_297.C P W All gene names: Y71F9B.8; 1D304; CE25571; WBGene00022129; WP:CE25571
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y71H2AM.13 Aff_Y71H2_390.F P W All gene names: Y71H2AM.13; 3D824; CE22953; WBGene00022178; WP:CE22953
Y71H2AM.17 Aff_Y71H2_390.A P W All gene names: Y71H2AM.17; 3D854; CE39070; WBGene00022182; WP:CE39070
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y73C8C.3 Aff_Y73C8C.3 P W All gene names: Y73C8C.3; 5D597; CE20359; WBGene00022262; WP:CE20359
Y73F8A.16 Aff_Y73F8A.O P W All gene names: tbx-39; Y73F8A.16; 4Q89; CE22985; NM_070450; WBGene00006558; WP:CE22985
Y73F8A.17 Aff_Y73F8A.P P W All gene names: tbx-40; Y73F8A.17; 4Q90; CE22986; NM_070451; WBGene00006559; WP:CE22986
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y75B12A.2 Aff_Y75B12A.2 P W All gene names: Y75B12A.2; 5P591; CE19269; WBGene00013566; WP:CE19269
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y75B8A.26 Aff_Y75B8A.FF P W All gene names: mrp-8; Y75B8A.26; 3N372; CE23037; NM_067197; WBGene00003414; WP:CE23037 WormBase description: mrp-8 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCC subfamily of ABC transporters that includes the multidrug resistance-associated proteins and the cystic fibrosis transmembrane conductance regulator; by homology, MRP-8 is predicted to function as an ATP-dependent organic anion transporter that transports molecules across the plasma membrane into the extracellular space; at present, the precise role of MRP-8 in C. elegans development and/or behavior is not yet known. WormBase CDS description: ABC transporters ; ABC transporter transmembrane region.
Y76B12C.8 Aff_Y76B12C_67.D P W All gene names: Y76B12C.8; Y76B12C.8.1; Y76B12C.8.2; 4C743; CE23063; WBGene00022302; WP:CE23063
Y82E9BL.2 Aff_Y119D3_465.D P W All gene names: Y82E9BL.2; 3C442; CE23418; WBGene00022319; WP:CE23418
Y82E9BL.3 Aff_Y119D3_465.E P W All gene names: Y82E9BL.3; 3C440; CE23419; WBGene00022320; WP:CE23419
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y82E9BL.5 Aff_Y119D3_465.F P W All gene names: Y82E9BL.5; 3C436; CE27547; WBGene00022322; WP:CE27547
Y9C9A.13 Aff_Y9C9A_54.B P W All gene names: Y9C9A.13; 4F722; CE25647; WBGene00021180; WP:CE25647
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC204.3 Aff_ZC204.3 P W All gene names: ZC204.3; 2B945; CE36349; WBGene00022555; WP:CE36349
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

ZC204.7 Aff_ZC204.7 P W All gene names: fbxb-15; ZC204.7; 2B942; CE29615; WBGene00022557; WP:CE29615
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma                                     

ZC204.9 Aff_ZC204.9 P W All gene names: fbxb-20; ZC204.9; 2B938; CE15100; WBGene00022559; WP:CE15100 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK1058.6 Aff_ZK1058.6 P W All gene names: nit-1; ZK1058.6; 3F11; CE01106; WBGene00014206; WP:CE01106 WormBase description: Nitrilase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

ZK1193.5 Aff_ZK1193.5 P W All gene names: ZK1193.5; CE33746; CE33747; CE33748; WBGene00022861; WP:CE33746; WP:CE33747; WP:CE33748; XB46 WormBase description: ZK1193.5 encodes, by alternative splicing, three proteins with a COMPASS (CMP) domain and two homeodomains; the CMP domain is found in the N-terminus of SATB-class CUT homeodomain proteins (e.g. human SATB1), and in Drosophila DEFECTIVE PROVENTRICULUS (DVE), to which ZK1193.5 may be orthologous; both DVE and ZK1193.5 encode two homeodomains which are highly divergent, but homologous between species, and probably derived by intragenic duplication; ZK1193.5 is required for a normally high rate of growth, fluid excretion, and larval viability in in mass RNAi assays.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

ZK1251.6 Aff_ZK1251.6 P W All gene names: msp-76; ZK1251.6; 4K453; NM_069321; WBGene00003463 WormBase description: msp-76 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein (MSP1)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK1320.10 Aff_ZK1320.10 P W All gene names: nlp-11; ZK1320.10; ZK1320.10.1; ZK1320.10.2; 2J978; CE01699; NM_063690; WBGene00003749; WP:CE01699
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK185.1 Aff_ZK185.1 P W All gene names: ZK185.1; 4F315; CE17310; WBGene00022681; WP:CE17310
ZK185.2 Aff_ZK185.2 P W All gene names: ZK185.2; 4F305; CE31747; WBGene00022682; WP:CE31747
ZK287.8 Aff_ZK287.8 P W All gene names: her-1; ZK287.8; 5K181; CE06617; CE37304; WBGene00001842; WP:CE06617; WP:CE37304 WormBase description: The autosomal gene her-1 is repressed by SDC-2 to elicit hermaphrodite differentiation; SDC-2 also represses transcription of X chromosomes to achieve dosage compensation.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes                                                                              

ZK354.1 Aff_ZK354.1 P W All gene names: msp-65; ZK354.1; 4G81; NM_068379; WBGene00003458 WormBase description: msp-65 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein (MSP-65)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK380.1 Aff_Y75D11B_91.A, Aff_ZK380.1 P W All gene names: tbx-32; ZK380.1; CE26339; NM_075903; WBGene00006551; WP:CE26339; XC271 WormBase description: DNA-binding protein
ZK430.5 Aff_ZK430.5 P W All gene names: ZK430.5; 2E703; CE05081; WBGene00022741; WP:CE05081
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

ZK546.4 Aff_ZK546.4 P W All gene names: ZK546.4; 2F229; CE02918; WBGene00022761; WP:CE02918
ZK637.4 Aff_ZK637.4 P W All gene names: ZK637.4; 3J983; CE00435; WBGene00014024; WP:CE00435
ZK673.5 Aff_ZK673.5 P W All gene names: ZK673.5; 2K751; CE02394; WBGene00014061; WP:CE02394
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK899.6 Aff_ZK899.6 P W All gene names: ZK899.6; CE01123; WBGene00014144; WP:CE01123; XK81
ZK909.5 Aff_ZK909.5 P W All gene names: fbxb-70; ZK909.5; 1P546; CE15481; WBGene00014149; WP:CE15481
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

ZK938.2 Aff_ZK938.2 P W All gene names: ZK938.2; 2K128; CE02397; WBGene00014159; WP:CE02397
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol