Hill et al 2000, developmentally modulated cluster, 81 genes

Gene list file name:Hill2000_T1_cluster3-3.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,3)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_F07H5.5 Aff_F07H5.5 P W
AFF_H12D21.5 Aff_H12D21.5 P W
AFF_Y57E12_242.A Aff_Y57E12_242.A P W
B0393.6 Aff_B0393.6 P W All gene names: B0393.6; 3F870; CE33964; WBGene00007171; WP:CE33964 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C05E7.1 Aff_C05E7.1 P W All gene names: C05E7.1; CE23522; WBGene00007343; WP:CE23522; XN560
C08A9.6 Aff_C08A9.6 P W All gene names: C08A9.6; CE06788; WBGene00015586; WP:CE06788; XR708
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C09G4.1 Aff_C09G4.1 P W All gene names: LAG1-1; hyl-1; C09G4.1; C09G4.1.1; C09G4.1.2; 4J307; CE27675; NM_069058; WBGene00002043; WP:CE27675 WormBase description: hyl-1 encodes a predicted transmembrane protein that is related to Saccharomyces cerevisiae LAG1 (longevity assurance gene), a protein preferentially expressed in young yeasts; by homology, HYL-1 is predicted to have several possible functions, including regulation of lipid, particularly ceramide, biosynthesis, regulation of lipid transport, and regulation of protein translocation in the endoplasmic reticulum; in C. elegans, however, neither the precise role of HYL-1 in development and/or behavior nor the hyl-1 expression pattern is yet known.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C09G4.2 Aff_C09G4.2 P W All gene names: C09G4.2; C09G4.2b.1; C09G4.2b.2; C09G4.2d.1; C09G4.2d.2; C09G4.2d.3; C09G4.2d.4; 4J301; CE31156; CE31157; CE31158; CE32576; WBGene00015650; WP:CE31156; WP:CE31157; WP:CE31158; WP:CE32576 WormBase description: cAMP-dependant protein kinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C10B5.3 Aff_C10B5.3 P W All gene names: C10B5.3; 5J64; CE35228; WBGene00015671; WP:CE35228
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C13D9.1 Aff_C13D9.1 P W All gene names: srr-6; C13D9.1; 5F487; CE08134; NM_071945; WBGene00005657; WP:CE08134
C13G3.1 Aff_C13G3.1 P W All gene names: C13G3.1; 5L492; CE05277; WBGene00007553; WP:CE05277
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Lund et al 2002  Fig4 Mount 15,                                  
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

C14C11.6 Aff_C14C11.6 P W All gene names: mut-14; C14C11.6; 5G140; CE06825; NM_072089; WBGene00003507; WP:CE06825 WormBase description: mut-14 mutants exhibit germline transposon activation, a deficient response to RNAi, resistance to co-suppression, and transgene desilencing. WormBase CDS description: helicase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, list of genes in                            
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C15A11.7 Aff_C15A11.7 P W All gene names: C15A11.7; 1H983; CE08175; WBGene00007599; WP:CE08175 WormBase description: amine oxidase
C24A11.9 Aff_C24A11.3, Aff_C30H7.1 P W All gene names: tag-134; C24A11.9; 1F982; CE29183; NM_059187; WBGene00000761; WP:CE29183 WormBase description: hexaprenyl pyrophosphate synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, herm soma enriched genes,                              
                                              Romagnolo et al 2002  Fig3b Metabolism, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Early                                
                                              genes, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

C30H7.2 Aff_C30H7.2 P W All gene names: C30H7.2; C30H7.2a.1; C30H7.2a.2; C30H7.2a.3; C30H7.2a.4; 1F986; CE27807; CE39231; WBGene00016278; WP:CE27807; WP:CE39231
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

C34C12.4 Aff_C34C12.4 P W All gene names: C34C12.4; C34C12.4.1; C34C12.4.2; 3E558; CE31434; WBGene00007923; WP:CE31434
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, list of genes in cluster D, Reinke                              
                                              et al 2004, fem3 enriched genes                                                    

C36A4.1 Aff_C36A4.1 P W All gene names: cyp-25A1; C36A4.1; 3E921; CE37711; NM_065374; WBGene00007963; WP:CE37711 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Menzel et al 2001  T3 CYP genes, ReichertK et                            
                                              al 2005  T3 xenobiotic downregulated, Reinke et al                                 
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, GO categories, Reinke et al 2004, herm soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 daf-16                                 
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

C36A4.4 Aff_C36A4.4 P W All gene names: C36A4.4; C36A4.4.1; C36A4.4.2; 3E932; CE27831; WBGene00007965; WP:CE27831
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C48B4.10 Aff_C48B4.10 P W All gene names: C48B4.10; 3K654; CE33604; WBGene00008173; WP:CE33604
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

D1081.4 Aff_D1081.4 P W All gene names: D1081.4; 1J44; CE28544; WBGene00008382; WP:CE28544 WormBase description: guanine nucleotide binding domains
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, IVb male soma enriched genes, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

F02D8.4 Aff_F02D8.4 P W All gene names: F02D8.4; 5P467; CE39143; WBGene00008521; WP:CE39143 WormBase description: carboxypeptidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, mixed sperm soma,                             
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster D, Reinke et al 2004, fem3                                
                                              enriched genes                                                                     

F07A5.2 Aff_F07A5.2 P W All gene names: F07A5.2; 1H929; CE05555; WBGene00008541; WP:CE05555
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, Fig2b shared gemlines,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, list of genes                              
                                              in cluster D, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F07C3.4 Aff_F07C3.4 P W All gene names: glo-4; F07C3.4; 5J716; CE38062; WBGene00017195; WP:CE38062 WormBase description: The F07C3.4 gene encodes a guanine-nucleotide releasing factor homolog that is homologous to human RP3. WormBase CDS description: guanine-nucleotide releasing factor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, list of genes in cluster D, Reinke                              
                                              et al 2004, fem3 enriched genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

F09F3.6 Aff_F09F3.6 P W All gene names: F09F3.6; 5O334; CE09289; WBGene00008628; WP:CE09289 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F09F7.5 Aff_F09F7.5 P W All gene names: F09F7.5; 3G639; CE01237; CE29259; CE29260; WBGene00017302; WP:CE01237; WP:CE29259; WP:CE29260
F14D7.7 Aff_F14D7.7 P W All gene names: F14D7.7; 5O788; CE09385; WBGene00008794; WP:CE09385
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F15G9.1 Aff_F15G9.1 P W All gene names: F15G9.1; CE01549; CE23660; CE32382; WBGene00008865; WP:CE01549; WP:CE23660; WP:CE32382; XK325
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F18H3.4 Aff_F18H3.4 P W All gene names: F18H3.4; CE23671; WBGene00008940; WP:CE23671; XO149
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F20D6.4 Aff_F20D6.4 P W All gene names: srp-7; F20D6.4; 5I663; CE07109; CE37003; CE37004; WBGene00005648; WP:CE07109; WP:CE37003; WP:CE37004 WormBase description: serine protease inhibitor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F21G4.2 Aff_F21G4.2 P W All gene names: mrp-4; F21G4.2; CE09548; NM_077257; WBGene00003410; WP:CE09548; XK507 WormBase description: The mrp-4 gene encodes a homolog of human CFTR, which when mutated leads to cystic fibrosis (OMIM:219700). WormBase CDS description: multidrug resistance-associated protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004,                                
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, GO categories,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F21H7.1 Aff_F21H7.1 P W All gene names: gst-22; F21H7.1; 5Q712; CE15874; NM_074694; WBGene00001770; WP:CE15874 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2                                           
                                              Glut-S-transferase, Jones et al 2001  Non dauer genes                              
                                              P<0.05                                                                             

F22D6.2 Aff_F22D6.2 P W All gene names: F22D6.2; F22D6.2.1; F22D6.2.2; 1H656; CE05683; WBGene00009050; WP:CE05683
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                            
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F35E12.9 Aff_F35E12.9 P W All gene names: F35E12.9; 5O222; CE32404; CE38514; WBGene00009433; WP:CE32404; WP:CE38514
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F37C12.10 Aff_F37C12.10 P W All gene names: F37C12.10; 3I276; CE00823; WBGene00018153; WP:CE00823
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Lund et al 2002  Fig4 Mount 15,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F39B2.3 Aff_F39B2.3 P W All gene names: F39B2.3; 1P380; CE16009; WBGene00009554; WP:CE16009 WormBase description: Zinc-binding dehydrogenases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

F39H2.3 Aff_F39H2.3 P W All gene names: F39H2.3; 1J241; CE37516; WBGene00009563; WP:CE37516 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: S.pombe hypothetical protein C21E11.07 like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

F47D12.9 Aff_F47D12.9 P W All gene names: F47D12.9; F47D12.9a.1; F47D12.9a.2; F47D12.9b.1; F47D12.9b.2; F47D12.9b.3; F47D12.9b.4; 3H390; CE01952; CE32425; WBGene00018564; WP:CE01952; WP:CE32425
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S5 genes                              
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

F47H4.10 Aff_F47H4.F P W All gene names: skr-5; F47H4.10; 5R829; CE20827; NM_074992; WBGene00004811; WP:CE20827 WormBase description: The skr-5 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-5(RNAi) animals are at least superficially normal.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Murphy                            
                                              et al 2003  Fig2 Class1 elongate lifespan, Romagnolo et                            
                                              al 2002  Fig3b Unkown, ViswanathanM et al 2005  S2                                 
                                              daf-16 Resveratrol                                                                 

F52F12.7 Aff_F52F12.7 P W All gene names: F52F12.7; 1K507; CE10852; WBGene00009940; WP:CE10852 WormBase description: F52F12.7 is orthologous to the human gene STEROIDOGENIC ACUTE REGULATORY PROTEIN (STAR; OMIM:600617), which when mutated leads to disease. WormBase CDS description: steroidogenic acute regulatory protein like
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

F54B8.4 Aff_F54B8.4 P W All gene names: F54B8.4; 5Q295; CE16106; WBGene00010019; WP:CE16106 WormBase description: The F54B8.4 gene encodes a homolog of Death Associated Protein 1 (DAP-1) protein that may be involved in apoptosis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56F3.2 Aff_F56F3.2 P W All gene names: ndg-4; F56F3.2; 3F554; CE01015; CE33658; NM_065506; WBGene00003577; WP:CE01015; WP:CE33658
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 TransientList,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F59B2.3 Aff_F59B2.3 P W All gene names: F59B2.3; 3K88; CE00231; WBGene00010308; WP:CE00231 WormBase description: N-acetyl-glucosamine-6-phosphate deacetylase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F59F4.2 Aff_F59F4.2 P W All gene names: F59F4.2; F59F4.2.1; F59F4.2.2; CE11548; WBGene00010337; WP:CE11548; XQ461
F59G1.1 Aff_F59G1.1 P W All gene names: F59G1.1; F59G1.1b.1; F59G1.1b.2; F59G1.1b.3; F59G1.1c.1; F59G1.1c.2; F59G1.1d.1; F59G1.1d.2; F59G1.1d.3; F59G1.1d.4; F59G1.1d.5; 2G205; CE29810; CE29811; CE30378; CE33409; WBGene00019127; WP:CE29810; WP:CE29811; WP:CE30378; WP:CE33409
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

H10E21.3 Aff_H10E21.3 P W All gene names: nhr-80; H10E21.3; H10E21.3a.1; H10E21.3a.2; 3A630; CE19488; CE28733; NM_064725; NM_181901; WBGene00003670; WP:CE19488; WP:CE28733 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

H12D21.7 Aff_H12D21.7 P W All gene names: H12D21.7; 5P379; CE36178; WBGene00010383; WP:CE36178
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

H19N07.4 Aff_H19N07.4 P W All gene names: H19N07.4; H19N07.4.1; H19N07.4.2; 5L600; CE16185; WBGene00010408; WP:CE16185 WormBase description: H19N07.4 encodes an integral membrane protein with acyl-CoA:diacylglycerol o-acyltransferase activity when expressed in yeast; H19N07.4 belongs to the MBOAT protein family, whose biochemically characterized members transfer fatty acids or acetate to membrane-associated hydroxyl-bearing substrates such as cholesterol, diacylglycerol, long-chain alcohols, or alginate; MBOAT proteins include MOM-1 and its Drosophila homolog PORCUPINE, involved in Wnt signalling; H19N07.4 has no obvious function in mass RNAi assays.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2 daf-16                            
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

H37A05.1 Aff_H37A05.1 P W All gene names: H37A05.1; 5O132; CE19946; WBGene00010425; WP:CE19946
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

K04A8.1 Aff_K04A8.1 P W All gene names: K04A8.1; K04A8.1.1; K04A8.1.2; 5H47; CE21019; WBGene00019373; WP:CE21019
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes                             

K05F1.7 Aff_K05F1.7 P W All gene names: msp-63; K05F1.7; 2G86; CE02811; NM_062742; WBGene00003456; WP:CE02811 WormBase description: msp-63 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: Major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

K07C11.3 Aff_K07C11.3 P W All gene names: K07C11.3; 5I687; CE29510; WBGene00019476; WP:CE29510
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

M01E11.4 Aff_M01E11.4 P W All gene names: pqn-52; M01E11.4; 1G136; CE28610; CE28611; CE37032; NM_059228; NM_059229; WBGene00019713; WP:CE28610; WP:CE28611; WP:CE37032 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

M01F1.3 Aff_M01F1.3 P W All gene names: M01F1.3; M01F1.3.1; M01F1.3.2; M01F1.3.3; CE01031; NM_065321; WBGene00010809; WP:CE01031 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: lipoic acid synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

M01G5.3 Aff_M01G5.3 P W All gene names: M01G5.3; 3C600; CE29983; WBGene00019716; WP:CE29983
M03F4.2 Aff_M03F4.2 P W All gene names: act-4; M03F4.2; M03F4.2a.1; M03F4.2a.2; M03F4.2a.3; M03F4.2b.1; M03F4.2b.2; CE12358; CE28620; CE37134; NM_076440; NM_076441; WBGene00000066; WP:CE12358; WP:CE28620; WP:CE37134; XF583; act4 WormBase description: An actin that is expressed in body wall and vulval muscles and the spermatheca.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt herm enriched                            
                                              gen, Reinke et al 2004, IVb male soma enriched genes,                              
                                              Roy et al 2002  S2 positivecontrol L1 muscle                                       

R02D5.3 Aff_R02D5.3 P W All gene names: R02D5.3; 5O963; CE12490; WBGene00010977; WP:CE12490
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

R02F2.1 Aff_R02F2.1 P W All gene names: R02F2.1; R02F2.1a.1; R02F2.1a.2; R02F2.1a.3; R02F2.1d.1; R02F2.1d.2; R02F2.1d.3; 3G595; CE29436; CE29437; CE32700; CE32701; WBGene00019831; WP:CE29436; WP:CE29437; WP:CE32700; WP:CE32701
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R12E2.11 Aff_R12E2.11 P W All gene names: R12E2.11; 1E740; CE18143; WBGene00020036; WP:CE18143 WormBase description: purine/pyrimidine phosphoribosyl transferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

T02B11.4 Aff_T02B11.4 P W All gene names: T02B11.4; T02B11.4.1; T02B11.4.2; 5B348; CE33302; WBGene00020156; WP:CE33302
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

T02C12.1 Aff_T02C12.1 P W All gene names: hum-5; T02C12.1; 3F120; CE01061; NM_065408; WBGene00002038; WP:CE01061; mceIA WormBase description: myosin IA
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T04A6.1 Aff_T04A6.1 P W All gene names: T04A6.1; 3I725; CE31585; CE31586; WBGene00020200; WP:CE31585; WP:CE31586
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, IVb male soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T06E6.10 Aff_T06E6.10 P W All gene names: T06E6.10; 5P897; CE13331; WBGene00011540; WP:CE13331
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T12A2.8 Aff_T12A2.8 P W All gene names: T12A2.8; T12A2.8.1; T12A2.8.2; 3H336; CE01401; WBGene00020442; WP:CE01401 WormBase description: DNA repair protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

T13A10.11 Aff_T13A10.11 P W All gene names: tag-32; T13A10.11; T13A10.11a.1; T13A10.11a.2; 4H42; CE30175; CE31726; WBGene00006416; WBGene00020470; WP:CE30175; WP:CE31726 WormBase description: S-adenosylmethionine synthetase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, shared sperm, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

T19C9.8 Aff_T19C9.8 P W All gene names: T19C9.8; 5R721; CE16425; WBGene00011844; WP:CE16425
T21C12.1 Aff_T21C12.1 P W All gene names: unc-49; unc-49A; unc-49B; unc-49C; T21C12.1; T21C12.1c.1; T21C12.1c.2; 3L621; CE02346; CE28082; CE28083; CE28084; CE28085; CE28086; CE35949; WBGene00006784; WP:CE02346; WP:CE28082; WP:CE28083; WP:CE28084; WP:CE28085; WP:CE28086; WP:CE35949 WormBase description: gamma-aminobutyric-acid receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Roy et al 2002  S2                                           
                                              positivecontrol L1 muscle, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

T23G11.1 Aff_T23G11.1 P W All gene names: T23G11.1; 1I278; CE14092; WBGene00011968; WP:CE14092
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

W02D3.1 Aff_W02D3.1 P W All gene names: W02D3.1; W02D3.1.1; W02D3.1.2; 1H317; CE14418; WBGene00020931; WP:CE14418 WormBase description: cytochrome B5
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

W02D7.5 Aff_W02D7.5 P W All gene names: W02D7.5; 5I776; CE35793; WBGene00020941; WP:CE35793
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

Y43F8C.2 Aff_Y116F11.YY P W All gene names: nlp-26; Y43F8C.2; Y43F8C.2.1; Y43F8C.2.2; 5U89; CE21900; NM_075401; WBGene00003764; WP:CE21900 WormBase description: nlp-26 encodes a predicted neuropeptide not found in multigene families within C. elegans and is not clearly related to other well-characterized neuropeptides.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y53C10A.5 Aff_Y53C10A.B P W All gene names: Y53C10A.5; 1M593; CE22373; WBGene00013136; WP:CE22373
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y54E5A.1 Aff_Y105E8A.AA P W All gene names: Y54E5A.1; 1P280; CE28791; WBGene00013197; WP:CE28791
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

Y60A3A.16 Aff_Y116F11.ZZ36 P W All gene names: Y60A3A.16; 5U390; CE24522; WBGene00013364; WP:CE24522
Y71G12B.18 Aff_Y71G12A_205.B P W All gene names: Y71G12B.18; 1C129; CE39977; WBGene00022156; WP:CE39977
Y76A2B.5 Aff_Y76A2B.5 P W All gene names: Y76A2B.5; 3O636; CE19277; WBGene00013577; WP:CE19277
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

ZK1058.6 Aff_ZK1058.6 P W All gene names: nit-1; ZK1058.6; 3F11; CE01106; WBGene00014206; WP:CE01106 WormBase description: Nitrilase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

ZK265.9 Aff_ZK265.5 P W All gene names: ZK265.9; 1I830; CE38132; WBGene00044094; WP:CE38132
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Early genes, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

ZK370.5 Aff_ZK370.5 P W All gene names: ZK370.5; ZK370.5.1; ZK370.5.2; 3J828; CE00397; WBGene00022719; WP:CE00397 WormBase description: Phosphoprotein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

ZK484.1 Aff_ZK484.1 P W All gene names: ZK484.1; ZK484.1.1; ZK484.1.2; ZK484.1.3; ZK484.1.4; ZK484.1.5; 1G671; CE15337; WBGene00022748; WP:CE15337
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK525.2 Aff_ZK525.2 P W All gene names: aqp-11; ZK525.2; 3O765; CE33909; NM_067420; WBGene00000179; WP:CE33909
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK856.5 Aff_ZK856.5 P W All gene names: ZK856.5; 5K666; CE38478; WBGene00014106; WP:CE38478
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated