Golden et al 2004, N2 vs daf-2 different genes at , 21 genes

Gene list file name:Golden2004_T3_N2_vs_daf2_differ_19days.txt
Type of gene identifier:MA primer pair (sjj)
Description:Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 19days  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0284.1 B0284.1 P W All gene names: B0284.1; 3F467; CE39550; WBGene00007131; WP:CE39550
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Lund et al 2002  Fig4 Mount 15                                

C03H5.1 C03H5.1 P W All gene names: clec-10; C03H5.1; 2A693; CE32109; WBGene00015403; WP:CE32109 WormBase description: 7TM chemoreceptor, clec family
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Jones et al 2001  Non dauer genes                             
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C36B1.4 C36B1.4 P W All gene names: pas-4; C36B1.4; C36B1.4.1; C36B1.4.2; C36B1.4.3; 1J304; CE05371; NM_059959; WBGene00003925; WP:CE05371 WormBase description: proteasome A-type submit
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig5                                   
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C55B7.4 C55B7.4 P W All gene names: acdh-1; dod-12; C55B7.4; C55B7.4b.1; C55B7.4b.2; C55B7.4b.3; C55B7.4b.4; 1H75; CE09015; CE32840; NM_059470; NM_181994; WBGene00016943; WP:CE09015; WP:CE32840 WormBase description: acyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Golden et al 2004, N2 differentially                                  
                                              expressed gen, Golden et al 2004, N2 vs daf-2 different                            
                                              genes at , McCarroll et al 2004  SFig1-4 conserved w/                              
                                              Drosoph, Reinke et al 2004, herm soma enriched genes,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F01G4.2 F01G4.2 P W All gene names: ard-1; F01G4.2; 4L897; CE03127; NM_069682; WBGene00000181; WP:CE03127 WormBase description: ard-1 encodes a homolog of mammalian 3-hydroxyacyl-CoA dehydrogenase (HADH II)/amyloid-beta binding alcohol dehydrogenase (ABAD) that is predicted to be mitochondrial. WormBase CDS description: short-chain alcohol dehydrogenase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig1-4                                 
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

F23F1.6 F23F1.6 P W All gene names: F23F1.6; 2A326; CE09606; WBGene00017747; WP:CE09606 WormBase description: amino acid permease
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster order, Reinke et al 2004, GO categories,                                
                                              Reinke et al 2004, herm soma enriched genes, Romagnolo                             
                                              et al 2002  Fig3b Transporters, ViswanathanM et al 2005                            
                                               S2 daf-16 Resveratrol, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

F28H6.1 F28H6.1 P W All gene names: akt-2; F28H6.1; F28H6.1b.1; F28H6.1b.2; CE18646; CE29298; NM_077956; WBGene00000103; WP:CE18646; WP:CE29298; XO769 WormBase description: akt-2 encodes a homolog of the serine/threonine kinase Akt/PKB, AKT-2, that is required for progression through the dauer stage of development and for the negative regulation of adult lifespan; inactivation of akt-2 causes animals to arrest constitutively at the dauer stage, while having an increased life span; widely expressed, AKT-2 is activated by the phospholipid products of phosphoinositide 3-kinase AGE-1/PI3K and by PDK-1, a homolog of vertebrate 3-phosphoinositide-dependent kinase-1 (PDK-1) Normal akt-2 (and akt-1) activity is required for excess pdk-1 activity to suppress the dauer-arrest phenotype of age-1, indicating that the 3-phosphoinositide-dependent kinase-1 homolog PDK-1 transduces signals from AGE-1 to AKT-2 (and AKT-1); conversely, the akt-2 loss-of-function phenotype is suppressed by daf-16 null mutations, indicating that the Fork head transcription factor DAF-16 is downstream of AKT-2 (and AKT-1), and that AKT-1 and AKT-2 act primarily to antagonize DAF-16. WormBase CDS description: PH (pleckstrin homology) domain, Protein kinase C terminal domain
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F35C8.8 F35C8.8 P W All gene names: F35C8.8; CE04500; WBGene00018038; WP:CE04500; XF990
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at                                                                 

F39H11.5 F39H11.5 P W All gene names: pbs-7; F39H11.5; F39H11.5.1; F39H11.5.2; 1J272; CE20761; NM_059953; WBGene00003953; WP:CE20761 WormBase description: pbs-7 encodes a B-type subunit of the 26S proteasome's 20S protease core particle; by homology, PBS-7 is predicted to function in ATP/ubiquitin-dependent nonlysosomal protein degradation; loss of pbs-7 activity via large-scale RNAi screens indicates that, in C. elegans, PBS-7 is required for normal movement and for embryonic, germline, and larval development. WormBase CDS description: Yeast NIP80 protein like
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig5                                   
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F55F3.1 F55F3.1 P W All gene names: aakb-1; F55F3.1; F55F3.1.1; F55F3.1.2; CE18744; WBGene00010115; WP:CE18744; XO377
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, McCarroll et al 2004  SFig1-4 conserved                            
                                              w/ Drosoph, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol                                                                        

F56F10.1 F56F10.1 P W All gene names: F56F10.1; F56F10.1.1; F56F10.1.2; CE34034; WBGene00018984; WP:CE34034; XB493 WormBase description: peptidase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

K07E8.3 K07E8.3 P W All gene names: sdz-24; K07E8.3; 2A949; CE29512; WBGene00019495; WP:CE29512
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S3  genes pass one-way ANOVA, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

R05H5.3 R05H5.3 P W All gene names: R05H5.3; 2K489; CE02290; WBGene00011038; WP:CE02290 WormBase description: thioredoxin
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, fem1 enriched                              
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T02G5.6 T02G5.6 P W All gene names: msh-4; T02G5.6; 2H369; CE04858; WBGene00003420; WP:CE04858 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, intrinsic,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

T05H10.6 T05H10.6 P W All gene names: T05H10.6; T05H10.6a.1; T05H10.6a.2; T05H10.6a.3; T05H10.6a.4; T05H10.6b.1; T05H10.6b.2; CE01643; CE32929; NM_063292; NM_182153; WBGene00011510; WP:CE01643; WP:CE32929 WormBase description: T05H10.6 encodes an ortholog of the human gene PYRUVATE DEHYDROGENASE (LIPOAMIDE) ALPHA 1 (PDHA1; OMIM:312170), which when mutated leads to Leigh syndrome (OMIM:256000); the T05H10.6 protein is predicted to be mitochondrial with 68% accuracy.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig5                                   
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

T24D1.3 T24D1.3 P W All gene names: T24D1.3; 1K536; CE14166; WBGene00011986; WP:CE14166
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, fem1 enriched                              
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T27E9.2 T27E9.2 P W All gene names: T27E9.2; T27E9.2.1; T27E9.2.2; 3O550; CE14265; WBGene00012094; WP:CE14265 WormBase description: ubiquinol-cytochrome c reductase complexn 11 KD protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, daf-2                                      
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene                                                           

W02D3.6 W02D3.6 P W All gene names: tag-194; W02D3.6; 1H306; CE14428; WBGene00007057; WBGene00020934; WP:CE14428 WormBase description: ADP, ATP carrier protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McElwee et al 2003  T1 targets of                             
                                              daf-16, Reinke et al 2004, male germline, Reinke et al                             
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, wt herm vs wt herm enriched gen, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol                                                     

Y38A8.2 Y38A8.2 P W All gene names: pbs-3; Y38A8.2; Y38A8.2.1; Y38A8.2.2; 2F244; CE07571; NM_062512; WBGene00003949; WP:CE07571 WormBase description: pbs-3 encodes a B-type subunit of the 26S proteasome's 20S protease core particle; by homology, PBS-3 is predicted to function in ATP/ubiquitin-dependent nonlysosomal protein degradation; loss of pbs-3 activity via large-scale RNAi screens indicates that, in C. elegans, PBS-3 is required for embryonic and germline development, movement, normal body coloration, and normal body morphology. WormBase CDS description: Peptidase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, Golden et al 2004, N2 differentially                               
                                              expressed gen, McCarroll et al 2004  SFig5 conserved w/                            
                                              yeast, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y40H7A.10 Y40H7A.10 P W All gene names: Y40H7A.10; 4P968; CE21821; WBGene00012747; WP:CE21821 WormBase description: Cysteine protease
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, N2 vs daf-2 different                            
                                              genes at , Jones et al 2001  Non dauer genes P<0.05,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y57G11C.12 Y57G11C.12 P W All gene names: nuo-3; Y57G11C.12; Y57G11C.12.1; Y57G11C.12.2; Y57G11C.12.3; Y57G11C.12.4; 4P560; CE14948; WBGene00013308; WP:CE14948 WormBase description: NADH-ubiquinone oxidoreductase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig1-4                                 
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0