Baugh et al 2003, subclass SE_23min, 165 genes

Gene list file name:Baugh2003_classSEpi_23min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass SE_23min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_C09G5.8 Aff_C09G5.8 P W
AFF_F08G12.6 Aff_F08G12.6 P W
AFF_F11D11.9 Aff_F11D11.9 P W
AFF_F21D9.6 Aff_F21D9.6 P W
AFF_F49H12.C Aff_F49H12.C P W
AFF_K09D9.D Aff_K09D9.D P W
AFF_R52.10 Aff_R52.10 P W
AFF_T28A11.14 Aff_T28A11.14 P W
AFF_Y105C5.RR Aff_Y105C5.RR P W
AFF_Y106G6H.10 Aff_Y106G6H.10 P W
AFF_Y106G6H.10_G Aff_Y106G6H.10_G P W
AFF_Y2C2_202.A Aff_Y2C2_202.A P W
AFF_Y49F6A_1689.C Aff_Y49F6A_1689.C P W
AFF_Y56A3A.W Aff_Y56A3A.W P W
B0286.4 Aff_B0286.4 P W All gene names: ntl-2; B0286.4; B0286.4a.1; B0286.4a.2; B0286.4c.1; B0286.4c.2; B0286.4c.3; B0286.4d.1; B0286.4d.2; B0286.4d.3; B0286.4d.4; B0286.4d.5; 2E664; CE03864; CE29537; CE29538; CE39662; NM_062371; NM_062372; NM_062373; WBGene00003825; WP:CE03864; WP:CE29537; WP:CE29538; WP:CE39662
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0303.14 Aff_B0303.14 P W All gene names: B0303.14; 3J804; CE00003; WBGene00015132; WP:CE00003 WormBase description: Giant secretory protein I-C
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0303.8 Aff_B0303.8 P W All gene names: sdz-1; B0303.8; 3J788; CE00001; WBGene00015129; WP:CE00001
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown                                

B0310.2 Aff_B0310.2 P W All gene names: B0310.2; B0310.2.1; B0310.2.2; CE03875; WBGene00015138; WP:CE03875; XB120 WormBase description: C2H2-type zinc fingers
B0462.3 Aff_B0462.3 P W All gene names: fbxb-119; B0462.3; 5S797; CE15556; WBGene00007182; WP:CE15556
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 daf-16 Resveratrol                                                     

B0464.5 Aff_B0464.5 P W All gene names: rsk-1; spk-1; srk-1; B0464.5; B0464.5b.1; B0464.5b.2; B0464.5c.1; B0464.5c.2; 3K551; CE20457; CE36373; CE36580; NM_066679; WBGene00004980; WP:CE20457; WP:CE36373; WP:CE36580 WormBase description: spk-1 encodes a serine/threonine kinase orthologous to the highly conserved serine/arginine-rich protein kinases (SRPKs) that phosphorylate SR proteins, essential components of the pre-mRNA splicing machinery; SPK-1, required for embryogenesis and germline development, can directly bind and phosphorylate RSP-3 (CeSF2/ASF), an SR splicing factor homolog; SPK-1 is expressed predominantly in the adult germline; SPK-1 is homologous to human RSK2, which when mutated leads to Coffin-Lowry syndrome (OMIM:303600). WormBase CDS description: Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0563.1 Aff_B0563.1 P W All gene names: B0563.1; CE02439; WBGene00015261; WP:CE02439; XJ787
C05D11.7 Aff_C05D11.7 P W All gene names: C05D11.7; C05D11.7a.1; C05D11.7a.2; 3H506; CE29663; CE30480; WBGene00015484; WP:CE29663; WP:CE30480
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C05D12.4 Aff_C05D12.4 P W All gene names: C05D12.4; 2L721; CE02972; WBGene00007341; WP:CE02972
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C05D12.5 Aff_C05D12.5 P W All gene names: C05D12.5; 2L723; CE02973; WBGene00007342; WP:CE02973
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C06C3.1 Aff_C06C3.1 P W All gene names: mel-11; C06C3.1; 2J657; CE20486; CE32566; CE32567; CE36682; NM_063593; WBGene00003196; WP:CE20486; WP:CE32566; WP:CE32567; WP:CE36682 WormBase description: ankyrin-like repeats
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C08B11.3 Aff_C08B11.3 P W All gene names: C08B11.3; 2I314; CE01473; WBGene00007433; WP:CE01473 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2 daf-16                            
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C08F1.8 Aff_C08F1.8 P W All gene names: C08F1.8; 2C92; CE08023; WBGene00015611; WP:CE08023 WormBase description: reverse transcriptase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C09H6.2 Aff_C09H6.2 P W All gene names: lin-10; C09H6.2; 1I686; CE15610; CE27060; NM_059825; WBGene00002999; WP:CE15610; WP:CE27060 WormBase description: The lin-10 gene encodes a PDZ and PTB domain-containing protein that is homologous to mammalian Munc interacting proteins (Mint1, OMIM:602414) and is required for polarized protein localization; LIN-10 is required for proper localization of the LET-23 EGF receptor to the basolateral membrane of the vulval precursor cells and for proper postsynaptic localization of GLR-1, an AMPA-type glutamate receptor in interneurons; LIN-10 is detected in the cytoplasm, membrane, and at particularly high levels in the Golgi. WormBase CDS description: Phosphotyrosine interaction domain (PTB/PID)., PDZ domain (Also known as DHR or GLGF). (2 domains)
C13B7.5 Aff_Y45G12C.G P W All gene names: str-119; C13B7.5; C13B7.A; 5C904; CE20503; NM_071265; WBGene00006170; WP:CE20503 WormBase description: 7TM chemoreceptor, str family
C17C3.7 Aff_C17C3.7 P W All gene names: hlh-25; C17C3.7; 2F825; CE04027; NM_062662; WBGene00001964; WP:CE04027
C17C3.8 Aff_C17C3.8 P W All gene names: hlh-26; C17C3.8; 2F822; CE04028; NM_062661; WBGene00001965; WP:CE04028
C17D12.7 Aff_C17D12.7 P W All gene names: C17D12.7; 1M196; CE23554; WBGene00007640; WP:CE23554
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C24H11.3 Aff_C24H11.3 P W All gene names: tbx-38; C24H11.3; 3M874; CE18526; NM_067125; WBGene00006557; WP:CE18526 WormBase description: T-box
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

C33A12.12 Aff_C33A12.12 P W All gene names: C33A12.12; 4K248; CE15665; WBGene00007887; WP:CE15665 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C33E10.1 Aff_C33E10.1 P W All gene names: C33E10.1; CE34265; WBGene00016345; WP:CE34265; XR919 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C35D6.3 Aff_C35D6.3 P W All gene names: C35D6.3; 4R99; CE15682; WBGene00007960; WP:CE15682
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C35E7.3 Aff_C35E7.3 P W All gene names: C35E7.3; 1L415; CE17516; WBGene00016455; WP:CE17516
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C35E7.5 Aff_C35E7.5 P W All gene names: C35E7.5; 1L403; CE17518; CE32817; WBGene00016457; WP:CE17518; WP:CE32817
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C36F7.1 Aff_C36F7.1 P W All gene names: irx-1; C36F7.1; 1K114; CE17526; WBGene00007984; WP:CE17526 WormBase description: Homeobox domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C39B5.2 Aff_C39B5.C P W All gene names: C39B5.2; 3D325; CE23578; WBGene00016520; WP:CE23578
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes                                                                              

C44C8.2 Aff_C44C8.2 P W All gene names: C44C8.2; 4B653; CE17542; WBGene00016647; WP:CE17542
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C47F8.1 Aff_C47F8.1 P W All gene names: C47F8.1; 1M929; CE17570; WBGene00008157; WP:CE17570 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C49A1.4 Aff_C49A1.4 P W All gene names: eya-1; C49A1.4; C49A1.4b.1; C49A1.4b.2; 1O814; CE15722; CE36113; WBGene00001377; WP:CE15722; WP:CE36113 WormBase description: eya-1 encodes a protein orthologous to Drosophila EYES ABSENT (EYA), human EYA1, and human EYA4; the human genes EYA1 and EYA4, when mutated, lead to branchiootorenal dysplasia syndrome (BOR; OMIM:113650) and autosomal dominant nonsyndromic sensorineural (late-onset) deafness (DFNA10; OMIM:601316).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C50E10.4 Aff_C50E10.4 P W All gene names: sop-2; C50E10.4; 2M633; CE32334; NM_064220; WBGene00004945; WP:CE32334
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C52D10.6 Aff_C52D10.6 P W All gene names: skr-12; C52D10.6; 4S111; CE17590; NM_070644; WBGene00004818; WP:CE17590 WormBase description: skr-12 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-12 has no known function in vivo, since skr-12(RNAi) animals are at least superficially normal. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C52D10.8 Aff_C52D10.8 P W All gene names: skr-13; C52D10.8; 4S106; CE17592; NM_070641; WBGene00004819; WP:CE17592 WormBase description: The skr-13 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-13(RNAi) animals are at least superficially normal. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Lund et al 2002  Fig3D Oocyte-en,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              Romagnolo et al 2002  Fig3b Proteases, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

D2096.1 Aff_D2096.1 P W All gene names: D2096.1; 4J163; CE04299; WBGene00017069; WP:CE04299
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

EEED8.12 Aff_EEED8.12 P W All gene names: EEED8.12; 2F700; CE01885; WBGene00017140; WP:CE01885 WormBase description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F08D12.10 Aff_F08D12.10 P W All gene names: fbxb-110; sdz-9; F08D12.10; 2D62; CE09243; WBGene00017253; WP:CE09243 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

F08H9.3 Aff_F08H9.3 P W All gene names: F08H9.3; 5O942; CE09267; WBGene00008591; WP:CE09267 WormBase description: F08H9.3 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the larval pharynx and the anterior adult pharynx), and its expression is not strongly induced by heat shock; however, F08H9.3 expression is increased by heat shock (with adult expression in the full pharynx) and probably aids heat shock resistance, since F08H9.3(RNAi) animals have sensitivity to heat shock that is sporadically higher than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, Lund et al 2002 Aging time                                
                                              course Fig2C heatshock, Lund et al 2002  Fig4 Mount 15,                            
                                              Romagnolo et al 2002  Fig2a heat shock                                             

F13E9.6 Aff_F13E9.6 P W All gene names: sdz-13; F13E9.6; 4L642; CE05608; WBGene00008755; WP:CE05608
F14B6.1 Aff_F14B6.1 P W All gene names: sdz-14; F14B6.1; 1M808; CE17663; WBGene00008782; WP:CE17663
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F19F10.1 Aff_F19F10.1 P W All gene names: F19F10.1; 5I41; CE09481; WBGene00017598; WP:CE09481 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Reinke et al 2004, wt herm vs wt herm enriched gen,                            
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              IVb male soma enriched genes, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

F22G12.3 Aff_F22G12.3 P W All gene names: F22G12.3; 1N737; CE15890; WBGene00009063; WP:CE15890 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F22G12.5 Aff_F22G12.5 P W All gene names: F22G12.5; 1N773; CE15892; WBGene00009065; WP:CE15892
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F23F12.4 Aff_F23F12.4 P W All gene names: sdz-15; F23F12.4; 3H587; CE01251; WBGene00017752; WP:CE01251 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F26A1.2 Aff_F26A1.2 P W All gene names: fkh-5; F26A1.2; 3F935; CE02683; NM_065602; WBGene00001437; WP:CE02683 WormBase description: fkh-5 encodes a member of the forkhead domain transcription factor family.
F28H1.1 Aff_F28H1.1 P W All gene names: F28H1.1; 1E565; CE09766; WBGene00017908; WP:CE09766
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F29G9.1 Aff_F29G9.1 P W All gene names: F29G9.1; 5G519; CE35297; WBGene00017930; WP:CE35297
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              F, Reinke et al 2004, fem1 enriched genes, Reinke et al                            
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen                                                               

F31E9.4 Aff_F31E9.4 P W All gene names: sdz-16; F31E9.4; 5R806; CE15938; WBGene00009297; WP:CE15938 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F38C2.7 Aff_F38C2.7 P W All gene names: F38C2.7; 4R32; CE16006; WBGene00009539; WP:CE16006 WormBase description: Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40G9.12 Aff_F40G9.12 P W All gene names: F40G9.12; 3A789; CE19859; WBGene00018247; WP:CE19859
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40G9.9 Aff_F40G9.9 P W All gene names: F40G9.9; 3A784; CE32413; WBGene00018245; WP:CE32413 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F43G6.5 Aff_F43G6.5 P W All gene names: F43G6.5; 2M106; CE23726; WBGene00009658; WP:CE23726 WormBase description: poly (A) polymerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F44F1.4 Aff_F44F1.4 P W All gene names: F44F1.4; 1N856; CE10418; WBGene00009696; WP:CE10418
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F44F1.5 Aff_F44F1.5 P W All gene names: F44F1.5; 1N848; CE10420; WBGene00009697; WP:CE10420
F44F1.7 Aff_F44F1.7 P W All gene names: vet-6; F44F1.7; 1N863; CE10424; NM_060931; WBGene00006902; WBGene00009699; WP:CE10424 WormBase description: vet-6 encodes a protein that contains a spectrin repeat; vet-6 is preferentially transcribed in embryos prior to gastrulation.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45D11.5 Aff_F45D11_40.I P W All gene names: F45D11.5; F45D11.M; 2B293; CE35934; WBGene00018452; WP:CE35934
F45D3.1 Aff_F45D3.1 P W All gene names: F45D3.1; 5N7; CE10468; WBGene00009721; WP:CE10468
F49B2.2 Aff_F49B2.2 P W All gene names: fbxb-67; F49B2.2; 1O885; CE16073; WBGene00009862; WP:CE16073 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F49H6.5 Aff_F49H6.5 P W All gene names: F49H6.5; 5R501; CE18715; WBGene00009908; WP:CE18715 WormBase description: The F49H6.5 gene encodes a homolog of the human gene MOCS1A, which when mutated leads to molybdenum cofactor deficiency (OMIM:252150).
F53C3.2 Aff_F53C3.2 P W All gene names: fbxb-103; F53C3.2; 2E197; CE19440; WBGene00018746; WP:CE19440 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

F53F8.5 Aff_F53F8.5 P W All gene names: F53F8.5; 5V168; CE17859; WBGene00010002; WP:CE17859
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes                                        

F53G2.6 Aff_F53G2.6 P W All gene names: tsr-1; F53G2.6; 2C752; CE37021; NM_061878; WBGene00006647; WP:CE37021 WormBase description: tsr-1 encodes a homolog of human transportin-SR, a nuclear transport receptor, and affects embryonic viability.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

F54E7.5 Aff_F54E7.5 P W All gene names: sdz-21; F54E7.5; 3G744; CE01316; WBGene00018828; WP:CE01316
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F55C10.2 Aff_F55C10.2 P W All gene names: col-154; F55C10.2; 5L865; CE05952; NM_073485; WBGene00000727; WP:CE05952 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F55C9.10 Aff_Y116F11.H P W All gene names: fbxb-61; F55C9.10; 5T775; CE18742; WBGene00010106; WP:CE18742 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.4 Aff_F55C9.4 P W All gene names: fbxb-57; F55C9.4; 5T763; CE18736; WBGene00010101; WP:CE18736 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.7 Aff_F55C9.7, Aff_Y116F11.F P W All gene names: fbxb-60; F55C9.7; 5T771; CE18739; WBGene00010104; WP:CE18739 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F56B3.4 Aff_F56B3.4 P W All gene names: skr-18; F56B3.4; 4B540; CE29969; CE37243; WBGene00004824; WP:CE29969; WP:CE37243 WormBase description: skr-18 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-18 has no known function in vivo, since skr-18(RNAi) animals are at least superficially normal.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S5                                 
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

F56F4.1 Aff_F56F4.1 P W All gene names: sdz-22; F56F4.1; 1G727; CE39020; WBGene00018978; WP:CE39020
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F57G8.8 Aff_F57G8.2 P W All gene names: srv-36; F57G8.8; 5Q806; CE35184; NM_074725; WBGene00005747; WP:CE35184
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F57G9.3 Aff_F57G9.3 P W All gene names: F57G9.3; 2M700; CE17919; WBGene00010219; WP:CE17919
F58E1.5 Aff_F58E1.5 P W All gene names: fbxb-17; F58E1.5; 2B965; CE11380; WBGene00019037; WP:CE11380 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F58G4.4 Aff_F58G4.4 P W All gene names: sdz-23; F58G4.4; 5I575; CE07309; WBGene00019066; WP:CE07309
F59G1.5 Aff_F59G1.5 P W All gene names: ptp-2; stp-1; F59G1.5; F59G1.5.1; F59G1.5.2; 2G211; CE02705; NM_062783; WBGene00004214; WP:CE02705 WormBase description: PROTEIN-TYROSINE PHOSPHATASE
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

H38K22.1 Aff_H38K22.1 P W All gene names: evl-14; H38K22.1; 3F394; CE33526; NM_065464; WBGene00001352; WP:CE33526 WormBase description: evl-14 encodes a homolog of the yeast sister cohesion protein Pds5p that functions during both mitosis and meiosis and is implicated in the maintenance of sister chromatid cohesion in late prophase, and affects vulval morphology, meiotic germline development, embryonic and larval viability, fertility, and cell divisions in the germ line as well as in vulval and somatic gonad lineages; some of the defects, such as somatic gonad defects, are due at least partially to cell division defects.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

K02B12.2 Aff_K02B12.2 P W All gene names: K02B12.2; 1J88; CE06063; WBGene00010495; WP:CE06063
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, list                            
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

K02E7.9 Aff_K02E7.9 P W All gene names: K02E7.9; 2B350; CE11638; WBGene00019313; WP:CE11638
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

K05C4.9 Aff_Y105E8A.MM P W All gene names: K05C4.9; 1P318; CE19977; WBGene00010585; WP:CE19977 WormBase description: Leucine Rich Repeat (2 copies) (3 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

K05F6.7 Aff_K05F6.7 P W All gene names: fbxb-54; K05F6.7; 2B846; CE28588; WBGene00019418; WP:CE28588
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M01D1.3 Aff_F45D11_40.A P W All gene names: M01D1.3; 2B314; CE23871; WBGene00019700; WP:CE23871
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M01D1.8 Aff_M01D1.8 P W All gene names: fbxb-41; M01D1.8; 2B332; CE12256; WBGene00019703; WP:CE12256 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

M01D7.2 Aff_M01D7.2 P W All gene names: scm-1; M01D7.2; 1C336; CE25946; NM_058510; SCAMP; WBGene00004743; WP:CE25946
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M01E5.6 Aff_M01E5.6 P W All gene names: M01E5.6; 1N890; CE12286; WBGene00010808; WP:CE12286
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

M03A1.1 Aff_M03A1.1 P W All gene names: vab-1; M03A1.1; 2E879; CE25060; CE28617; NM_062405; NM_062406; WBGene00006868; WP:CE25060; WP:CE28617 WormBase description: tyrosine-protein kinase receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

M151.5 Aff_M151.5 P W All gene names: fbxb-31; M151.5; 2D922; CE12442; WBGene00019797; WP:CE12442
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R02C2.1 Aff_R02C2.1 P W All gene names: R02C2.1; 5A716; CE33150; WBGene00019814; WP:CE33150 WormBase description: protein kinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R06A4.6 Aff_R06A4.6 P W All gene names: sdz-26; R06A4.6; 2O669; CE18113; WBGene00011049; WP:CE18113 WormBase description: similar to PES-10
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

R07C3.6 Aff_R07C3.6 P W All gene names: R07C3.6; 2B213; CE12532; WBGene00019922; WP:CE12532
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R07G3.1 Aff_R07G3.1 P W All gene names: cdc-42; R07G3.1; R07G3.1.1; R07G3.1.2; 2H907; CE02020; NM_063197; WBGene00000390; WP:CE02020 WormBase description: The cdc-42 gene encodes a RHO GTPase which controls polarity of both individual cells and developing embryos by regulating the localization of PAR proteins; it is expressed at hypodermal cell boundaries. WormBase CDS description: RAS protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

R107.1 Aff_R107.1 P W All gene names: indy-3; nac-2; nat-1; R107.1; R107.1.1; R107.1.2; 3K130; CE33536; NM_066599; WBGene00003518; WP:CE33536
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

R11A5.3 Aff_R11A5.3 P W All gene names: R11A5.3; 1I438; CE12726; WBGene00011231; WP:CE12726
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R11B5.1 Aff_R11B5.1 P W All gene names: tag-236; R11B5.1; CE28759; WBGene00020002; WBGene00044061; WP:CE28759; XD144
R13A5.5 Aff_R13A5.5 P W All gene names: ceh-13; R13A5.5; 3I647; CE28767; NM_066254; WBGene00000437; WP:CE28767 WormBase description: a homolog of Hox genes of labial/Hox1 type; affects viability, body shape and anterior patterning during embryogenesis, interacts genetically with hox genes; and is expressed in A, D, E and MS lineages in the early embryo, and in the anterior dorsal hypodermal cells, anterior body wall muscle cells, and in the cells of the prospective ventral nerve cord at the comma stage; and in the ventral nerve cord and and ventral and dorsal hypodermal cells in L1 larvae.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S6 removed genes of                                      
                                              contamination, Wang et al 2003  S7 SAGE genes in the                               
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

R13D11.7 Aff_R13D11.7 P W All gene names: R13D11.7; 5B266; CE12794; WBGene00020061; WP:CE12794
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes                                                                              

R148.4 Aff_R148.4 P W All gene names: R148.4; 3E261; CE12854; WBGene00020103; WP:CE12854
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, Fig2b shared                                   
                                              gemlines, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

R17.1 Aff_R17.1 P W All gene names: fbxb-85; R17.1; 3L936; CE16314; WBGene00011267; WP:CE16314 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R52.1 Aff_R52.1 P W All gene names: bath-16; sdz-28; R52.1; 2C421; CE12824; WBGene00020073; WP:CE12824
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T04D3.2 Aff_T04D3.2 P W All gene names: sdz-30; T04D3.2; 1N899; CE13155; WBGene00011432; WP:CE13155
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T05D4.2 Aff_T05D4.2 P W All gene names: T05D4.2; 3O650; CE16342; WBGene00011475; WP:CE16342
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

T05E7.5 Aff_T05E7.5 P W All gene names: T05E7.5; 1G778; CE13239; NM_059386; WBGene00020261; WP:CE13239
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T06E6.13 Aff_T06E6.13 P W All gene names: fbxa-104; T06E6.13; 5P900; CE18215; WBGene00011542; WP:CE18215
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T07C4.8 Aff_T07C4.8 P W All gene names: ced-9; T07C4.8; 3L427; CE25104; NM_066883; WBGene00000423; WP:CE25104 WormBase description: ced-9 is required for control of programmed cell death during development; it encodes the only C. elegans homolog of BCL-2. WormBase CDS description: Apoptosis regulator proteins, Bcl-2 family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T08G5.3 Aff_T08G5.3 P W All gene names: T08G5.3; 5O506; CE18945; WBGene00011624; WP:CE18945
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T10B10.3 Aff_T10B10.3 P W All gene names: T10B10.3; T10B10.3.1; T10B10.3.2; CE06401; WBGene00011680; WP:CE06401; XP798
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T11A5.5 Aff_T11A5.5 P W All gene names: sdz-31; T11A5.5; 5K359; CE06411; WBGene00011704; WP:CE06411
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T15H9.6 Aff_T15H9.6 P W All gene names: T15H9.6; 2J898; CE01669; WBGene00011791; WP:CE01669 WormBase description: poly(A) polymerase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T17A3.6 Aff_T17A3.6 P W All gene names: fbxb-83; T17A3.6; 3A758; CE29343; WBGene00020543; WP:CE29343
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

T17A3.7 Aff_T17A3.7 P W All gene names: fbxb-84; T17A3.7; 3A764; CE19584; NM_064756; WBGene00020544; WP:CE19584 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T19C3.1 Aff_T19C3.1 P W All gene names: T19C3.1; 3B226; CE30182; WBGene00020559; WP:CE30182
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

T22B2.1 Aff_T22B2.1 P W All gene names: T22B2.1; CE13928; WBGene00020665; WP:CE13928; XE545
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T23D8.9 Aff_T23D8.9 P W All gene names: sys-1; T23D8.9; 1K556; CE18959; CE27209; WBGene00006379; WBGene00011946; WP:CE18959; WP:CE27209 WormBase description: sys-1 encodes a novel protein that contains three divergent armadillo repeats; during gonadogenesis, SYS-1 functions in a Wnt/MAPK signaling pathway as a dosage-dependent beta-catenin-like transcriptional coactivator required for specification of distal cell fates; consistent with its role as a beta-catenin, SYS-1 interacts, in yeast two-hybrid and coimmunoprecipitation assays, with the POP-1/TCF transcription factor with which it can stimulate transcription via TCF binding sites; in two hybrid-assays, the POP-1/SYS-1 interaction requires the N-terminal beta-catenin binding domain of POP-1, and most of the SYS-1 protein; the SYS-1 expression pattern is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T24C4.2 Aff_T24C4.2 P W All gene names: T24C4.2; 3B482; CE19593; WBGene00020758; WP:CE19593
T27E9.6 Aff_T27E9.6 P W All gene names: T27E9.6; 3O564; CE34099; WBGene00012096; WP:CE34099
T28F4.4 Aff_T28F4.4 P W All gene names: T28F4.4; 1I62; CE06526; WBGene00012139; WP:CE06526
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

VF13D12L.1 Aff_VF13D12L.A P W All gene names: VF13D12L.1; VF13D12L.1.1; VF13D12L.1.2; 2L990; CE31076; WBGene00012148; WP:CE31076 WormBase description: myo-inisitol-1-phosphate synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

W02B9.1 Aff_W02B9.1 P W All gene names: hmr-1; W02B9.1; Y52B11B.2; 1L668; CE25133; CE30357; WBGene00001980; WP:CE25133; WP:CE30357 WormBase description: hmr-1 encodes two isoforms of a classical cadherin that contain extracellular cadherin, EGF-like, and laminin G domains as well as a highly conserved intracellular domain that binds beta-catenin; by homology, the HMR-1 proteins are predicted to function as calcium-dependent, homophilic cell-cell adhesion receptors; in vivo, HMR-1A activity is required for mediating the cell migrations, cell shape changes, and presumably actin cytoskeleton rearrangements that occur during embryonic morphogenesis; HMR-1B is required for fasciculation and outgrowth of a subset of motor neuron processes; HMR-1 antibodies detect expression in all embryonic blastomeres at early stages of development but as hypodermal adherens junctions form and morphogenesis begins, HMR-1 becomes highly expressed in the apical junctions of all hypodermal cells; later, HMR-1 is expressed primarily at the apical margins of hypodermal, pharyngeal, and intestinal cells in a pattern consistent with localization to adherens junctions; an HMR-1B reporter fusion is expressed in neurons, including the DD, VD, and AS class of motor neurons; HMR-1 activity is required for proper localization of other junctional components, such as HMP-1/alpha-catenin and HMP-2/beta-catenin, but not for localization of AJM-1, the junctional component recognized by the MH27 antibody. WormBase CDS description: cadherin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

W03D2.1 Aff_W03D2.1 P W All gene names: pqn-75; W03D2.1; 4E841; CE14506; CE28501; CE31729; NM_171311; NM_171312; NM_171903; WBGene00004157; WP:CE14506; WP:CE28501; WP:CE31729 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
W04A8.3 Aff_W04A8.3 P W All gene names: W04A8.3; 1O436; CE16537; WBGene00012238; WP:CE16537
W09G12.1 Aff_W09G12.1 P W All gene names: dsl-2; W09G12.1; 4B956; CE23182; NM_067651; WBGene00001104; WP:CE23182
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E                                             

W09G12.4 Aff_W09G12.4 P W All gene names: dsl-1; W09G12.4; 4B960; CE18343; NM_067653; WBGene00001103; WP:CE18343
Y105C5B.13 Aff_Y105C5.KK, Aff_Y105C5.LL P W All gene names: skr-10; Y105C5B.13; 4Q711; CE24062; NM_070501; WBGene00004816; WP:CE24062 WormBase description: skr-10 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-10 is required for posterior body morphogenesis, embryonic and larval development, and cell proliferation; SKR-10 is expressed in the tip and end regions of the intestine and can interact in vivo with CUL-1 and CUL-2, C. elegans cullin homologs.
Y106G6D.1 Aff_Y106G6D.1 P W All gene names: Y106G6D.1; 1K682; CE19299; WBGene00013698; WP:CE19299
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y106G6H.9 Aff_Y106G6H.9 P W All gene names: Y106G6H.9; 1L30; CE20419; WBGene00013721; WP:CE20419 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

Y113G7B.8 Aff_Y113G7B.F P W All gene names: fbxb-59; Y113G7B.8; 5U674; CE23290; WBGene00013759; WP:CE23290 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Y116A8B.1 Aff_Y116A8B.1 P W All gene names: Y116A8B.1; 4S161; CE16679; WBGene00013779; WP:CE16679
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y116A8C.19 Aff_Y116A8A.G P W All gene names: Y116A8A.G; Y116A8C.19; 4R982; CE23328; WBGene00013796; WP:CE23328
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y116A8C.20 Aff_Y116A8A.F P W All gene names: Y116A8A.F; Y116A8C.20; 4R985; CE23329; WBGene00013797; WP:CE23329
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y25C1A.6 Aff_Y25C1A.I P W All gene names: Y25C1A.6; Y25C1A.6.1; Y25C1A.6.2; Y25C1A.I; CE21473; WBGene00021293; WP:CE21473
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y32H12A.5 Aff_Y32H12A_57.D P W All gene names: Y32H12A.5; Y32H12A.5.1; Y32H12A.5.2; 3G466; CE35070; WBGene00021313; WP:CE35070
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y37E11B.5 Aff_Y37E11B.5 P W All gene names: Y37E11B.5; 4E360; CE19615; WBGene00021377; WP:CE19615 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y38H6C.16 Aff_Y38H6C.16 P W All gene names: Y38H6C.16; 5V6; CE19110; WBGene00012628; WP:CE19110
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

Y39A1A.16 Aff_Y39A1A.16 P W All gene names: Y39A1A.16; 3L769; CE19136; WBGene00012654; WP:CE19136 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y39B6A.11 Aff_Y39B6.V P W All gene names: Y39B6A.11; Y39B6B.V; 5T605; CE21697; WBGene00012673; WP:CE21697
Y39G10AR.10 Aff_Y39G10A_246.A P W All gene names: Y39G10AR.10; Y39G10AR.10.1; Y39G10AR.10.2; 1C869; CE26989; WBGene00021468; WP:CE26989
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

Y39G10AR.18 Aff_Y74C10A_151.B P W All gene names: Y39G10AR.18; 1C952; CE36735; CE38003; WBGene00021474; WP:CE36735; WP:CE38003
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y43F11A.1 Aff_Y43F11.A P W All gene names: Y43F11A.1; 2M402; CE21916; WBGene00012841; WP:CE21916
Y44A6C.2 Aff_Y44A6C.2 P W All gene names: Y44A6C.2; 5V193; CE18389; WBGene00012851; WP:CE18389
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

Y49F6B.5 Aff_Y49F6B_110.F P W All gene names: sdz-32; Y49F6B.5; 2D765; CE25339; WBGene00021717; WP:CE25339
Y51H7BR.2 Aff_Y51H7B_6.B P W All gene names: fbxb-43; Y51H7BR.2; 2B827; CE22356; WBGene00021774; WP:CE22356
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes                                                   

Y55B1BR.3 Aff_Y55B1B_119.B P W All gene names: Y55B1BR.3; 3B49; CE24463; WBGene00021913; WP:CE24463
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

Y55F3AM.15 Aff_Y55F3A_739.A P W All gene names: csn-4; Y55F3AM.15; 4B832; CE25482; NM_067633; WBGene00000816; WP:CE25482 WormBase description: csn-4 encodes a protein with similarity to human COP9 proteasome subunit 4.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

Y55F3BR.8 Aff_Y55F3A_747.E P W All gene names: Y55F3BR.8; 4B602; CE31657; CE37730; WBGene00021945; WP:CE31657; WP:CE37730
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, Romagnolo et al 2002  Fig3b Unkown,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y56A3A.15 Aff_Y56A3A.M P W All gene names: fbxb-24; Y56A3A.15; Y56A3A.G; 3M999; CE22582; WBGene00013234; WP:CE22582 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y60A3A.1 Aff_Y60A3.W P W All gene names: unc-51; Y60A3.W; Y60A3A.1; Y60A3A.1.1; Y60A3A.1.2; 5U466; CE24516; NM_075468; WBGene00006786; WP:CE24516 WormBase description: The unc-51 gene encodes an activity required for both axonogenesis and sex myoblast migration. WormBase CDS description: serine/threonine protein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y71H2AM.17 Aff_Y71H2_390.A P W All gene names: Y71H2AM.17; 3D854; CE39070; WBGene00022182; WP:CE39070
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y73C8C.3 Aff_Y73C8C.3 P W All gene names: Y73C8C.3; 5D597; CE20359; WBGene00022262; WP:CE20359
Y73F8A.16 Aff_Y73F8A.O P W All gene names: tbx-39; Y73F8A.16; 4Q89; CE22985; NM_070450; WBGene00006558; WP:CE22985
Y73F8A.17 Aff_Y73F8A.P P W All gene names: tbx-40; Y73F8A.17; 4Q90; CE22986; NM_070451; WBGene00006559; WP:CE22986
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

ZC204.3 Aff_ZC204.3 P W All gene names: ZC204.3; 2B945; CE36349; WBGene00022555; WP:CE36349
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

ZC204.7 Aff_ZC204.7 P W All gene names: fbxb-15; ZC204.7; 2B942; CE29615; WBGene00022557; WP:CE29615
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma                                     

ZK354.1 Aff_ZK354.1 P W All gene names: msp-65; ZK354.1; 4G81; NM_068379; WBGene00003458 WormBase description: msp-65 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein (MSP-65)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK380.1 Aff_Y75D11B_91.A, Aff_ZK380.1 P W All gene names: tbx-32; ZK380.1; CE26339; NM_075903; WBGene00006551; WP:CE26339; XC271 WormBase description: DNA-binding protein
ZK673.5 Aff_ZK673.5 P W All gene names: ZK673.5; 2K751; CE02394; WBGene00014061; WP:CE02394
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated