Hill et al 2000, developmentally modulated cluster, 135 genes

Gene list file name:Hill2000_T1_cluster2-4.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,4)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_H23N18.A Aff_H23N18.A P W
AFF_T10E10.2 Aff_T10E10.2 P W
B0213.5 Aff_B0213.5 P W All gene names: nlp-30; B0213.5; CE16776; NM_071707; WBGene00003768; WP:CE16776 WormBase description: nlp-30 encodes five predicted neuropeptide-like proteins; in C. elegans, nlp-30 is part of the YGGWamide neuropeptide family that also contains nlp-24, nlp-25, and nlp-27-32; nlp-30 is expressed in the hypodermis, suggesting that the peptides it encodes may have a non-neuronal function; as loss of nlp-30 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of the nlp-30-encoded peptides in development and/or behavior is not yet known.
B0213.6 Aff_B0213.6 P W All gene names: nlp-31; B0213.6; 5E459; CE16777; NM_071706; WBGene00003769; WP:CE16777 WormBase description: nlp-31 encodes five predicted neuropeptide-like proteins; in C. elegans, nlp-31 is part of the YGGWamide neuropeptide family that also contains nlp-24, nlp-25, and nlp-27-32; nlp-31 is expressed in the hypodermis, suggesting that the peptides it encodes may have a non-neuronal function; nlp-31 expression is also detected in precomma-stage embryos; as loss of nlp-31 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of the nlp-31-encoded peptides in development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Reinke                            
                                              et al 2004, IVb male soma enriched genes                                           

B0222.7 Aff_B0222.7 P W All gene names: col-145; B0222.7; 5J642; CE06698; NM_072974; WBGene00000718; WP:CE06698
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

B0361.9 Aff_B0361.9 P W All gene names: B0361.9; 3I388; CE00838; WBGene00015163; WP:CE00838
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

B0554.1 Aff_B0554.1 P W All gene names: B0554.1; 5A917; CE07773; WBGene00015254; WP:CE07773
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C03A7.4 Aff_C03A7.4 P W All gene names: pqn-5; C03A7.4; 5F633; CE07862; NM_071981; WBGene00004099; WP:CE07862 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  T1 pqn genes                                   

C03A7.8 Aff_C03A7.8 P W All gene names: abu-7; pqn-7; C03A7.8; 5F638; CE07866; NM_071983; WBGene00000030; WP:CE07866 WormBase description: abu-7 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-7 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-7 may help protect the organism from damage by improperly folded nascent protein.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  T1 pqn genes,                                  
                                              ViswanathanM et al 2005  Fig6A Resveratrol                                         

C06G8.1 Aff_C06G8.1 P W All gene names: C06G8.1; 4L544; CE05229; WBGene00007384; WP:CE05229
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C08F11.8 Aff_C08F11.8 P W All gene names: ugt-22; C08F11.8; 4O407; CE17385; WBGene00007455; WP:CE17385 WormBase description: UDP-glucoronosyl and UDP-glucosyl transferases
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Romagnolo et al 2002  Fig3b Detoxification,                              
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C09G5.3 Aff_C09G5.3 P W All gene names: col-79; C09G5.3; 2K993; CE01483; NM_063907; WBGene00000655; WP:CE01483 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C09G5.6 Aff_C09G5.6 P W All gene names: bli-1; C09G5.6; 2L1; CE35827; NM_063910; WBGene00000251; WP:CE35827 WormBase description: The bli-1 gene encodes an unusual cuticular collagen that is required for proper strut formation within the unique medial layer of the adult cuticle; bli-1 interacts genetically with other cuticular collagens such as bli-2 and rol-1, and may be processed for secretion by BLI-4, a Kex2/subtilisin serine endoproteinase; consistent with its role in adult cuticle formation, bli-1 mRNA is highly expressed only during the L4 larval stage. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C10H11.3 Aff_C10H11.3 P W All gene names: ugt-25; C10H11.3; 1F303; CE08092; WBGene00015692; WP:CE08092 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, mixed sperm soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, fem3                                 
                                              enriched genes                                                                     

C15A11.1 Aff_C15A11.1 P W All gene names: col-35; C15A11.1; 1H962; CE08169; NM_059685; WBGene00000612; WP:CE08169 WormBase description: col-35 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-35 are most closely related to those of COL-8, COL-19, and COL-39. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C17H12.8 Aff_C17H12.8 P W All gene names: C17H12.8; 4H583; CE19360; WBGene00015933; WP:CE19360
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              A, Reinke et al 2004, list of genes in cluster order,                              
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 Early genes,                               
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

C18H7.3 Aff_C18H7.3 P W All gene names: col-102; C18H7.3; 4B353; CE17428; NM_067556; WBGene00000676; WP:CE17428 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C23H5.9 Aff_C23H5.9 P W All gene names: grl-20; C23H5.9; 4C892; CE17442; NM_067766; WBGene00001729; WP:CE17442
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C27H5.5 Aff_C27H5.5 P W All gene names: col-36; C27H5.5; 2H458; CE06893; NM_063086; WBGene00000613; WP:CE06893 WormBase description: col-36 encodes a collagen protein; expressed during the L1 to L2 and L2 to dauer larval stage molts. WormBase CDS description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C28H8.5 Aff_C28H8.5 P W All gene names: C28H8.5; 3G973; CE01827; CE39681; WBGene00016196; WP:CE01827; WP:CE39681
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C29E4.1 Aff_C29E4.1 P W All gene names: col-90; C29E4.1; 3J39; CE00083; NM_066328; WBGene00000665; WP:CE00083 WormBase description: Cuticle collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster B,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

C29F9.2 Aff_C29F9.2 P W All gene names: C29F9.2; 3A339; 3A749; CE08450; WBGene00016217; WP:CE08450
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C29H12.2 Aff_C29H12.2 P W All gene names: C29H12.2; C29H12.2.1; C29H12.2.2; C29H12.2.3; 2G415; CE02516; WBGene00016235; WP:CE02516
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

C39E9.8 Aff_C39E9.8 P W All gene names: C39E9.8; 4N847; CE05391; CE27838; WBGene00008032; WP:CE05391; WP:CE27838
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

C40H1.4 Aff_C40H1.4 P W All gene names: elo-4; C40H1.4; 3K420; CE00112; NM_066655; WBGene00001242; WP:CE00112 WormBase description: The elo-4 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase; its function in vivo is unknown. WormBase CDS description: Yeast hypothetical YCR34W
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, wt herm vs wt herm enriched gen, Reinke et al                             
                                              2004, fem3 enriched genes                                                          

C42D4.3 Aff_C42D4.3 P W All gene names: C42D4.3; 4H945; CE04191; WBGene00016596; WP:CE04191
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C44C10.1 Aff_C44C10.1 P W All gene names: col-180; C44C10.1; CE05408; NM_077559; WBGene00000753; WP:CE05408; XM332 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C45B2.2 Aff_C45B2.2 P W All gene names: C45B2.2; CE02552; WBGene00016659; WP:CE02552; XG703
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

C46A5.3 Aff_C46A5.3 P W All gene names: col-14; C46A5.3; 4I519; CE08753; CE29723; NM_068872; WBGene00000603; WP:CE08753; WP:CE29723; col14 WormBase description: col-14 encodes a collagen protein that affects vulval morphology in a large-scale RNAi screen; mRNA expressed in embryos and transcript levels peak during each larval stage.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Jones et al 2001  T3 20 most abundant                                      
                                              Mixed-stage, ReichertK et al 2005  T2 xenobiotic                                   
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

C49G7.3 Aff_C49G7.3 P W All gene names: C49G7.3; 5E525; CE08861; WBGene00016781; WP:CE08861
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C52E4.5 Aff_C52E4.5 P W All gene names: C52E4.5; 5M464; CE08947; WBGene00008258; WP:CE08947 WormBase description: alpha 1,2, mannosidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C54D10.3 Aff_C54D10.3 P W All gene names: C54D10.3; C54D10.3.1; C54D10.3.2; 5M899; CE05499; WBGene00008298; WP:CE05499
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C55B7.4 Aff_C55B7.4 P W All gene names: acdh-1; dod-12; C55B7.4; C55B7.4b.1; C55B7.4b.2; C55B7.4b.3; C55B7.4b.4; 1H75; CE09015; CE32840; NM_059470; NM_181994; WBGene00016943; WP:CE09015; WP:CE32840 WormBase description: acyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Golden et al 2004, N2 differentially                                  
                                              expressed gen, Golden et al 2004, N2 vs daf-2 different                            
                                              genes at , McCarroll et al 2004  SFig1-4 conserved w/                              
                                              Drosoph, Reinke et al 2004, herm soma enriched genes,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C56A3.1 Aff_C56A3.1 P W All gene names: grl-17; C56A3.1; 5O42; CE09029; NM_073958; WBGene00001726; WP:CE09029
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

D1086.3 Aff_D1086.3 P W All gene names: D1086.3; 5O573; CE09061; WBGene00008390; WP:CE09061
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, fem1 enriched                                
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, wt herm vs wt herm enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

D2023.7 Aff_D2023.7 P W All gene names: col-158; D2023.7; 5M311; CE09077; NM_073580; WBGene00000731; WP:CE09077 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

D2024.8 Aff_D2024.8 P W All gene names: col-114; D2024.8; 4I10; CE27897; NM_068749; WBGene00000688; WP:CE27897 WormBase description: cuticle collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

E01G4.3 Aff_E01G4.3 P W All gene names: E01G4.3; 2N752; CE09110; WBGene00008446; WP:CE09110
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                            
                                               S4 Dauer Enriched                                                                 

E01G4.6 Aff_E01G4.6 P W All gene names: E01G4.6; 2N775; CE15755; WBGene00008448; WP:CE15755
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C                               

E02A10.2 Aff_E02A10.2 P W All gene names: grl-23; E02A10.2; 5N52; CE09116; NM_073745; WBGene00001732; WP:CE09116
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol                             

F01D5.5 Aff_F01D5.5 P W All gene names: F01D5.5; 2O294; CE18562; WBGene00008495; WP:CE18562
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Wang et al 2003  S4 Early genes, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F08A8.2 Aff_F08A8.2 P W All gene names: F08A8.2; 1N537; CE17634; WBGene00008565; WP:CE17634 WormBase description: ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F08C6.6 Aff_F08C6.6 P W All gene names: F08C6.6; CE27925; WBGene00017244; WP:CE27925; XI186
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig1-4                                    
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F08G5.4 Aff_F08G5.4 P W All gene names: col-130; F08G5.4; 4N192; CE05574; NM_069971; WBGene00000704; WP:CE05574 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Jones et al 2001  T3 20 most abundant                                      
                                              Mixed-stage, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F09B12.3 Aff_F09B12.3 P W All gene names: F09B12.3; CE31469; WBGene00008607; WP:CE31469; XP714
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F11C7.2 Aff_F11C7.2 P W All gene names: F11C7.2; CE07051; WBGene00017376; WP:CE07051; XS11
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

F11G11.10 Aff_F11G11.10 P W All gene names: col-17; F11G11.10; 2F156; CE31783; NM_062477; WBGene00000606; WP:CE31783 WormBase description: col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster C,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

F14E5.5 Aff_F14E5.5 P W All gene names: F14E5.5; 2I731; CE03208; WBGene00008803; WP:CE03208
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F15A4.6 Aff_F15A4.6 P W All gene names: F15A4.6; 2M763; CE15843; WBGene00008841; WP:CE15843 WormBase description: Toxocara surface glycoprotein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

F17C8.2 Aff_F17C8.2 P W All gene names: col-89; F17C8.2; 3F837; CE00956; NM_065574; WBGene00000664; WP:CE00956 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F19C7.7 Aff_F19C7.7 P W All gene names: col-110; F19C7.7; 4F372; CE04421; NM_068197; WBGene00000684; WP:CE04421 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F22B8.6 Aff_F22B8.6 P W All gene names: F22B8.6; F22B8.6.1; F22B8.6.2; 5Q581; CE15884; WBGene00009048; WP:CE15884 WormBase description: cystathione gamma-lyase like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F23B2.11 Aff_F23B2.11 P W All gene names: pcp-3; F23B2.11; F23B2.11.1; F23B2.11.2; 4J920; CE09591; NM_069197; WBGene00003958; WP:CE09591 WormBase description: lysosomal carboxypeptidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F26G1.5 Aff_F26G1.5 P W All gene names: F26G1.5; 2F60; CE02697; WBGene00017841; WP:CE02697
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F27C1.8 Aff_F27C1.8 P W All gene names: dpy-5; F27C1.8; F27C1.8.1; F27C1.8.2; 1G0; CE09720; NM_059194; WBGene00001067; WP:CE09720 WormBase description: dpy-5 encodes a cuticle collagen that affects body length and cuticle structure and specifically affects the formation of annuli and the expression of dpy-7, dpy-13, and col-19; mRNA abundance increases two hours prior to the secretion of each new cuticle, and mRNA levels appear to increase at and after the L2 larval stages. WormBase CDS description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F29B9.9 Aff_F29B9.9 P W All gene names: col-111; F29B9.9; 4F420; CE34831; NM_068206; WBGene00000685; WP:CE34831 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

F32A5.4 Aff_F32A5.4 P W All gene names: F32A5.4; F32A5.4a.1; F32A5.4a.2; 2H519; CE01274; CE32640; WBGene00017970; WP:CE01274; WP:CE32640 WormBase description: Immunodominant antigen
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F32E10.3 Aff_F32E10.3 P W All gene names: F32E10.3; 4I337; CE37227; WBGene00017991; WP:CE37227 WormBase description: LDL-receptor ligand-binding repeat
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

F33D11.3 Aff_F33D11.3 P W All gene names: col-54; F33D11.3; 1G421; CE09893; NM_059293; WBGene00000631; WP:CE09893 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

F38B6.5 Aff_F38B6.5 P W All gene names: col-172; F38B6.5; F38B6.5b.1; F38B6.5b.2; CE04518; CE34552; WBGene00000745; WP:CE04518; WP:CE34552; XH293 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40A3.3 Aff_F40A3.3 P W All gene names: F40A3.3; F40A3.3b.1; F40A3.3b.2; 5I359; CE10146; CE38516; WBGene00018218; WP:CE10146; WP:CE38516 WormBase description: phosphatidylethanolamine binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, list                             
                                              of genes in cluster B, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 LateList, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

F41C6.5 Aff_F41C6.5 P W All gene names: col-173; F41C6.5; CE04542; NM_076761; WBGene00000746; WP:CE04542; XH494 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F41E6.2 Aff_F41E6.2 P W All gene names: grd-5; F41E6.2; 5J99; CE10246; NM_072822; WBGene00001694; WP:CE10246 WormBase description: grd-5 encodes a predicted secreted protein that is a member of the C. elegans groundhog gene family; by homology, GRD-5 is predicted to be involved in cell communication; loss of grd-5 activity via RNA-mediated interference (RNAi) can result in low levels of embryonic lethality, suggesting a possible role in embryogenesis; a grd-5 reporter gene is expressed in adults in anterior and posterior hypodermal seam cells, in a pattern that overlaps that of grd-3.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F44A6.5 Aff_F44A6.5 P W All gene names: F44A6.5; CE03326; WBGene00009677; WP:CE03326; XK834
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

F45D3.3 Aff_F45D3.3 P W All gene names: F45D3.3; 5N30; CE10472; WBGene00009723; WP:CE10472
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F45D3.4 Aff_F45D3.4 P W All gene names: F45D3.4; 5N32; CE10474; CE38518; WBGene00009724; WP:CE10474; WP:CE38518
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Romagnolo et al 2002  Fig3b Unkown,                             
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Shen et al 2005  T1 hif-1indepen hypoxia, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F47B8.2 Aff_F47B8.2 P W All gene names: F47B8.2; 5O796; CE10634; WBGene00009803; WP:CE10634
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

F47G4.3 Aff_F47G4.3 P W All gene names: F47G4.3; 1O669; CE18701; WBGene00009824; WP:CE18701 WormBase description: F47G4.3 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases; although loss of F47G4.3 activity via large-scale RNAi screens results in no obvious defects, F47G4.3 mRNA expression is upregulated in response to hypertonicity, suggesting that the F47G4.3 gene product does play a role in osmotic stress adaptation in C. elegans. WormBase CDS description: NAD-dependent glycerol-3-phosphate dehydrogenase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, Reinke et al 2004, wt herm vs                             
                                              wt herm enriched gen, ViswanathanM et al 2005  Fig6A                               
                                              Ethanol Paraquat                                                                   

F49D11.8 Aff_F49D11.8 P W All gene names: cpn-4; F49D11.8; 1L516; CE17082; NM_060448; WBGene00000780; WP:CE17082 WormBase description: cpn-4 encodes a calponin homolog, most closely related to its paralog CPN-3 in C. elegans; CPN-4 is somewhat more similar to calponins per se (such as CLP1 and CLP2 in humans) than to the to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F52H3.5 Aff_F52H3.5 P W All gene names: F52H3.5; 2K321; CE03401; WBGene00009947; WP:CE03401
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F53G12.7 Aff_F53G12.7 P W All gene names: col-45; F53G12.7; 1A589; CE11018; NM_058278; WBGene00000622; WP:CE11018 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

F54B11.2 Aff_F54B11.2 P W All gene names: col-44; F54B11.2; CE05926; NM_077873; WBGene00000621; WP:CE05926; XO211 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F55A12.9 Aff_F55A12.9 P W All gene names: pqn-44; F55A12.9; F55A12.9d.1; F55A12.9d.2; F55A12.9d.3; F55A12.9d.4; F55A12.9d.5; 1F942; CE08345; CE26925; CE30809; CE33399; NM_059179; NM_059180; NM_170865; NM_182025; WBGene00004131; WP:CE08345; WP:CE26925; WP:CE30809; WP:CE33399 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  S2 daf-16                                    
                                              Resveratrol                                                                        

F55G11.5 Aff_F55G11.5 P W All gene names: dod-22; F55G11.5; 4N731; CE18751; NM_070081; WBGene00010125; WP:CE18751
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              A, Reinke et al 2004, list of genes in cluster order,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F56D3.1 Aff_F56D3.1 P W All gene names: F56D3.1; F56D3.1.1; F56D3.1.2; F56D3.1.3; 2E439; CE29410; WBGene00018969; WP:CE29410
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Reinke et al 2004, IVb male soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F57B7.3 Aff_F57B7.3 P W All gene names: col-156; F57B7.3; 5L930; CE05991; NM_073501; WBGene00000729; WP:CE05991 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster C,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

F58E6.1 Aff_F58E6.2 P W All gene names: STAT-B; F58E6.1; CE20893; CE25921; WBGene00010251; WP:CE20893; WP:CE25921 WormBase description: The F58E6.1 encodes a protein that may be involved in apoptosis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F59B10.5 Aff_F59B10.5 P W All gene names: F59B10.5; 2K810; CE01594; WBGene00010321; WP:CE01594
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F59E12.12 Aff_F59E12.12 P W All gene names: bli-2; F59E12.12; 2F940; CE11540; NM_062703; WBGene00000252; WP:CE11540 WormBase description: A cuticle collagen involved in strut assembly in the adult cuticle.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

H05L03.3 Aff_H05L03.3 P W All gene names: H05L03.3; H05L03.3.1; H05L03.3.2; CE34043; WBGene00019160; WP:CE34043; XG523
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated                                                                          

H10E21.4 Aff_H10E21.4 P W All gene names: H10E21.4; 3A636; CE19489; WBGene00019184; WP:CE19489 WormBase description: calcium-binding protein
H43E16.1 Aff_H43E16.1 P W All gene names: H43E16.1; 2G969; CE19949; WBGene00019273; WP:CE19949
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

K02E2.4 Aff_K02E2.4 P W All gene names: ins-35; K02E2.4; 5U845; CE18839; NM_075525; WBGene00002118; WP:CE18839 WormBase description: ins-35 encodes one of several insulin-related peptides.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

K02F3.3 Aff_K02F3.3 P W All gene names: far-8; K02F3.3; 3B461; CE34046; NM_064872; WBGene00001392; WP:CE34046
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen                                                                       

K03B8.7 Aff_K03B8.7 P W All gene names: grl-3; K03B8.7; 5L889; CE06081; NM_073495; WBGene00001712; WP:CE06081
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

K04A8.8 Aff_K04A8.8 P W All gene names: spp-20; K04A8.8; 5H36; CE30812; NM_072264; WBGene00005005; WP:CE30812 WormBase description: 7TM chemoreceptor, spp family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

K04E7.2 Aff_K04E7.2 P W All gene names: opt-2; pep-2; K04E7.2; CE25039; NM_076686; WBGene00003877; WP:CE25039; XH79 WormBase description: Oligopeptide transporter
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, herm soma enriched genes, Romagnolo                             
                                              et al 2002  Fig3b Transporters, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S3  genes pass                             
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

K10H10.2 Aff_K10H10.2 P W All gene names: K10H10.2; K10H10.2.1; K10H10.2.2; 2O780; CE16252; WBGene00010759; WP:CE16252 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: beta-synthase
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, GO categories, Reinke                            
                                              et al 2004, herm soma enriched genes, Shen et al 2005                              
                                              T1 hif-1 depend hypoxia, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated                                                                  

K11G12.1 Aff_K11G12.1 P W All gene names: nas-11; K11G12.1; CE36313; CE37260; WBGene00003530; WP:CE36313; WP:CE37260; XH333
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K12D12.3 Aff_K12D12.3 P W All gene names: col-84; K12D12.3; 2M159; CE02272; NM_064134; WBGene00000659; WP:CE02272 WormBase description: cuticle collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen                                                                       

M01H9.1 Aff_M01H9.1 P W All gene names: M01H9.1; 4F253; CE34580; WBGene00019717; WP:CE34580
R02D3.6 Aff_R02D3.6 P W All gene names: grl-19; R02D3.6; 4B4; CE18100; NM_067484; WBGene00001728; WP:CE18100
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R03D7.1 Aff_R03D7.1 P W All gene names: R03D7.1; 2L219; CE01609; WBGene00010988; WP:CE01609 WormBase description: R03D7.1 is orthologous to the human gene METHIONINE SYNTHASE (MTR; OMIM:156570), which when mutated leads to disease. WormBase CDS description: 5-methyltetrahydrofolate-homocysteine methyltransferase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R06C7.10 Aff_R06C7.10 P W All gene names: let-75; myo-1; R06C7.10; R06C7.10.1; R06C7.10.2; 1H836; CE06253; NM_059652; WBGene00002348; WP:CE06253; myosin I WormBase description: let-75 encodes a pharynx-specific type II myosin heavy chain (MHC D); LET-75 is required for pharyngeal muscle contraction and thus for normal feeding behavior and post-embryonic development; in vitro, the LET-75 tail domain interacts with ITR-1, an IP3 receptor, and this interaction has been proposed to mediate, in vivo, increased pharnygeal pumping in response to food; LET-75 is expressed exclusively in pharyngeal muscle. WormBase CDS description: myosin heavy chain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R09B5.9 Aff_R09B5.9 P W All gene names: cnc-4; R09B5.9; 5B925; CE12634; NM_071015; WBGene00000558; WP:CE12634
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Jones et al 2001  T3 20 most abundant                                      
                                              Mixed-stage, Reinke et al 2004, IVb male soma enriched                             
                                              genes                                                                              

T01D1.3 Aff_T01D1.3 P W All gene names: T01D1.3; 2A464; CE12946; WBGene00020148; WP:CE12946
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

T03F1.11 Aff_T03F1.11 P W All gene names: T03F1.11; 1E423; CE37040; WBGene00020192; WP:CE37040
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T05B4.3 Aff_T05B4.3 P W All gene names: phat-4; T05B4.3; 5E609; CE13197; WBGene00020237; WP:CE13197
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T05C12.10 Aff_T05C12.10 P W All gene names: qua-1; T05C12.10; 2I493; CE34989; M110; NM_063324; WBGene00004264; WP:CE34989 WormBase description: hedgehog-like protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

T05E12.6 Aff_T05E12.5 P W All gene names: T05E12.6; 5R566; CE32485; WBGene00011487; WP:CE32485
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

T05G5.6 Aff_T05G5.6 P W All gene names: ech-6; T05G5.6; T05G5.6.1; T05G5.6.2; 3K842; CE00318; NM_066755; WBGene00001155; WP:CE00318 WormBase description: Enoyl-CoA hydratase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              Reinke et al 2004, GO categories, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 Climbing, Wang                             
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

T06D8.1 Aff_T06D8.1 P W All gene names: T06D8.1; 2L509; CE21154; CE32930; WBGene00011522; WP:CE21154; WP:CE32930
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T06G6.6 Aff_T06G6.6 P W All gene names: T06G6.6; 1N307; CE37143; WBGene00011548; WP:CE37143
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T07E3.4 Aff_T07E3.4 P W All gene names: T07E3.4; T07E3.4a.1; T07E3.4a.2; T07E3.4b.1; T07E3.4b.2; 3H989; CE01385; CE32717; WBGene00020315; WP:CE01385; WP:CE32717 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

T10H9.5 Aff_T10H9.5 P W All gene names: pmp-5; T10H9.5; T10H9.5c.1; T10H9.5c.2; 5H144; CE18253; CE36505; CE38546; NM_072288; NM_182335; WBGene00004062; WP:CE18253; WP:CE36505; WP:CE38546 WormBase description: ABC transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, GO categories, Reinke et                             
                                              al 2004, herm soma enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                    
                                              Climbing, Wang et al 2003  S3  genes pass one-way                                  
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

T11F9.9 Aff_T11F9.9 P W All gene names: col-157; T11F9.9; 5L963; CE06421; NM_073512; WBGene00000730; WP:CE06421 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T13B5.3 Aff_T13B5.3 P W All gene names: T13B5.3; 2B388; CE13607; WBGene00020471; WP:CE13607 WormBase description: acid phosphatase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Reinke et al 2004, herm soma enriched genes,                             
                                              Reinke et al 2004, GO categories, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 Climbing, Wang                             
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

T17H7.1 Aff_T17H7.1 P W All gene names: T17H7.1; 3B359; CE07502; WBGene00020550; WP:CE07502
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T19C3.2 Aff_T19C3.2 P W All gene names: T19C3.2; 3B234; CE02053; WBGene00020560; WP:CE02053
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T21D9.1 Aff_F49H12.J P W All gene names: col-164; T21D9.1; CE04989; NM_075985; WBGene00000737; WP:CE04989; XC713 WormBase description: procollagen alpha
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Lund et al 2002  Fig1 aging-regulated genes,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T22B7.3 Aff_T22B7.2 P W All gene names: T22B7.3; CE31242; WBGene00020672; WP:CE31242; XG273
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, IVb male soma enriched genes, Romagnolo et al                             
                                              2002  Fig3b Unkown                                                                 

T22H6.2 Aff_T22H6.2 P W All gene names: T22H6.2; T22H6.2a.1; T22H6.2a.2; CE03697; CE26824; WBGene00011938; WP:CE03697; WP:CE26824; XN405 WormBase description: 1-pyroline-5-carboxylate synthetase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

T27F2.4 Aff_T27F2.4 P W All gene names: T27F2.4; 5M130; CE06522; WBGene00012101; WP:CE06522
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  Fig6A Ethanol HS                             

T28F2.6 Aff_T28F2.6 P W All gene names: col-50; T28F2.6; 1E218; CE14361; NM_058793; WBGene00000627; WP:CE14361 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

W01B6.7 Aff_W01B6.7 P W All gene names: col-2; W01B6.7; 4K848; CE03759; NM_069428; WBGene00000593; WP:CE03759 WormBase description: col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals. WormBase CDS description: cuticle collagen (CC02)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

W06D12.3 Aff_W06D12.3 P W All gene names: fat-5; W06D12.3; 5S205; CE16551; NM_075081; WBGene00001397; WP:CE16551 WormBase description: fat-5 encodes a delta-9 fatty acid desaturase that is predicted to be mitochondrial; when expressed heterologously in S. cerevisiae, FAT-5 rescues the fatty acid auxotrophy of the yeast delta-9 desaturase mutant ole1. WormBase CDS description: Fatty acid desaturase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

W08D2.6 Aff_W08D2.6 P W All gene names: col-123; W08D2.6; 4K587; CE06561; NM_069355; WBGene00000697; WP:CE06561 WormBase description: col-123 is homologous to the human gene A TYPE IV COLLAGEN (COL6A1; OMIM:303631), which when mutated is sometimes associated with diffuse leiomyomatosis. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W08E12.4 Aff_W08E12_12.G P W All gene names: W08E12.4; 4E67; CE21277; WBGene00021085; WP:CE21277
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W09C5.4 Aff_W09C5.4 P W All gene names: ins-33; W09C5.4; 1O228; CE20166; NM_060988; WBGene00002116; WP:CE20166 WormBase description: ins-33 encodes an insulin-like peptide of the insulin superfamily of proteins (OMIM:176730, 147440); INS-33 is one of 38 insulin-like peptides in C. elegans; loss of INS-33 function can result in embryonic lethality, slow growth, and lack of coordination; additionally, INS-33 appears to be a direct downstream target of LIN-14, a nuclear protein and key regulator of the temporal sequence of postembryonic developmental events.
Y19D2B.1 Aff_Y19D2B.1 P W All gene names: Y19D2B.1; 2L210; CE19055; WBGene00012489; WP:CE19055
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

Y37D8A.3 Aff_Y37D8A.3 P W All gene names: Y37D8A.3; 3N927; CE20208; WBGene00012545; WP:CE20208
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit, Wang et al 2003  S4 genes pass two-wayANOVA                            
                                              P0                                                                                 

Y38C1BA.3 Aff_Y38C1_87.A P W All gene names: col-109; Y38C1BA.3; Y38C1BA.A; 4C582; CE21569; NM_067737; WBGene00000683; WP:CE21569 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  Fig6A Resveratrol,                             
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                            
                                               S4 LateList                                                                       

Y39G8B.7 Aff_Y39G8B.H P W All gene names: Y39G8B.7; 2O282; CE24248; WBGene00012727; WP:CE24248
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

Y45G12C.2 Aff_F56A4.I, Aff_Y45G12C.M P W All gene names: gst-10; Y45G12C.2; Y45G12C.M; 5D41; CE21937; NM_071300; WBGene00001758; WP:CE21937 WormBase description: gst-10 encodes a predicted glutathione S-transferase with similarity to human glutathione S-transferase P. WormBase CDS description: glutathione S-transferase
Y47G6A.15 Aff_Y47G6A_247.E P W All gene names: Y47G6A.15; 1E40; CE22105; WBGene00021641; WP:CE22105
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

Y52B11B.1 Aff_Y52B11B.1 P W All gene names: Y52B11B.1; 1L715; CE19220; WBGene00013130; WP:CE19220
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

Y54E10BL.2 Aff_Y54E10B_152.D P W All gene names: col-48; Y54E10BL.2; 1D579; CE25434; NM_058687; WBGene00000625; WP:CE25434 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order                                                                              

Y57E12B.1 Aff_Y57E12_249.A P W All gene names: Y57E12B.1; 5H429; CE22642; WBGene00021961; WP:CE22642
Y66A7A.6 Aff_Y66A7A.6 P W All gene names: gly-8; Y66A7A.6; Y66A7A.6.1; Y66A7A.6.2; Y66A7A.6.3; 3M717; CE15691; NM_067103; WBGene00001633; WP:CE15691 WormBase description: gly-8 encodes a predicted transmembrane polypeptide N-acetylgalactosaminyl transferase (ppGaNTase) similar to the essential Drosophila ppGaNTase encoded by Pgant35A; by homology, GLY-8 is predicted to function as a Golgi enzyme that catalyzes transfer of N-acetylgalactosamine to serine and threonine-containing acceptor peptides, thus initiating mucin-type O-glycosylation; as loss of gly-8 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GLY-8 in C. elegans development and/or behavior is not yet known. WormBase CDS description: Glycosyl transferases
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

ZK1010.7 Aff_ZK1010.7 P W All gene names: col-97; ZK1010.7; 3O82; CE15507; NM_067299; WBGene00000672; WP:CE15507 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

ZK1290.3 Aff_ZK1290.3 P W All gene names: rol-8; ZK1290.3; 2H835; CE29156; CE32085; NM_063181; NM_182112; WBGene00004398; WP:CE29156; WP:CE32085; col6 WormBase description: rol-8 encodes a collagen that is enriched in dauer larvae; mutations cause adults to become left-handed rollers.
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

ZK678.5 Aff_ZK678.5 P W All gene names: wrt-4; ZK678.5; ZK678.5.1; ZK678.5.2; CE24735; NM_078192; WBGene00006950; WP:CE24735; XQ372 WormBase description: Hint module
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

ZK836.1 Aff_ZK836.1 P W All gene names: lon-3; ZK836.1; 5M678; CE15415; WBGene00003057; WP:CE15415 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ReichertK et al 2005  T2 xenobiotic induced                                
                                              Collag, Wang et al 2003  S3  genes pass one-way ANOVA,                             
                                              Wang et al 2003  S4 LateList, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

ZK863.2 Aff_ZK863.2 P W All gene names: col-37; ZK863.2; 5M646; CE15437; NM_073652; WBGene00000614; WP:CE15437 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

ZK909.3 Aff_ZK909.3 P W All gene names: ZK909.3; 1P545; CE30581; WBGene00014148; WP:CE30581 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: guanosine-3',5'-bis(diphosphate)-pyrophosphohydrolase like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol