Baugh et al 2003, subclass E_23min, 895 genes

Gene list file name:Baugh2003_classEpi_23min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass E_23min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

6R55.1 Aff_6R55.1 P W All gene names: 6R55.1; CE19652; CE26787; WBGene00007068; WP:CE19652; WP:CE26787; XS331
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

AFF_B0413.D Aff_B0413.D P W
AFF_C09G5.8 Aff_C09G5.8 P W
AFF_F08G12.6 Aff_F08G12.6 P W
AFF_F09E5.4 Aff_F09E5.4 P W
AFF_F11D11.9 Aff_F11D11.9 P W
AFF_F15A4.1 Aff_F15A4.1 P W
AFF_F21D9.6 Aff_F21D9.6 P W
AFF_F36H2.2 Aff_F36H2.2 P W
AFF_F48A11.6 Aff_F48A11.6 P W
AFF_F49H12.C Aff_F49H12.C P W
AFF_F56A11.1 Aff_F56A11.1 P W
AFF_K07F5.14 Aff_K07F5.14 P W
AFF_K09D9.D Aff_K09D9.D P W
AFF_K10C9.2 Aff_K10C9.2 P W
AFF_R144.3 Aff_R144.3 P W
AFF_R52.10 Aff_R52.10 P W
AFF_T01G9.2 Aff_T01G9.2 P W
AFF_T08B2.9 Aff_T08B2.9 P W
AFF_T27E9.7 Aff_T27E9.7 P W
AFF_T28A11.14 Aff_T28A11.14 P W
AFF_Y105C5.RR Aff_Y105C5.RR P W
AFF_Y105E8A.H Aff_Y105E8A.H P W
AFF_Y105E8A.L Aff_Y105E8A.L P W
AFF_Y106G6H.10 Aff_Y106G6H.10 P W
AFF_Y106G6H.10_G Aff_Y106G6H.10_G P W
AFF_Y2C2_202.A Aff_Y2C2_202.A P W
AFF_Y38A10A.B Aff_Y38A10A.B P W
AFF_Y38F2A_6126.E Aff_Y38F2A_6126.E P W
AFF_Y49F6A_1689.C Aff_Y49F6A_1689.C P W
AFF_Y4C6A.J Aff_Y4C6A.J P W
AFF_Y53F4B.H Aff_Y53F4B.H P W
AFF_Y54E10A_159.C Aff_Y54E10A_159.C P W
AFF_Y55B1B_119.E Aff_Y55B1B_119.E P W
AFF_Y56A3A.W Aff_Y56A3A.W P W
AFF_Y81G3A.A Aff_Y81G3A.A P W
B0001.7 Aff_B0001.7 P W All gene names: B0001.7; 4M916; CE05145; WBGene00007092; WP:CE05145
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

B0205.7 Aff_B0205.7 P W All gene names: kin-3; B0205.7; B0205.7.1; B0205.7.2; 1L311; CE17321; NM_060410; WBGene00002191; WP:CE17321 WormBase description: kin-3 encodes an ortholog of the catalytic subunit of casein kinase II alpha, which in Drosophila and mammals is required for normal circadian rhythms, and which directly phosphorylates the Drosophila PERIOD protein (which itself regulates circadian rhythms); by analogy, KIN-3 might be expected to help regulate heterochronic functions dependent on such proteins as LIN-42. WormBase CDS description: casein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0261.2 Aff_B0261.2 P W All gene names: CE-TOR; let-363; B0261.2; 1F831; CE32559; CE32560; CeTor; NM_059148; NM_059151; WBGene00002583; WP:CE32559; WP:CE32560 WormBase description: let-363 encodes, by alternative splicing, two large (>2600-residue) proteins with C-terminal similarity to phosphatidylinositol kinase (PIK); LET-363 proteins are orthologous to S. cerevisiae Tor1p and Tor2p and human FRAP1 (OMIM:601231, mammalian target of FKBP12-rapamycin); LET-363 proteins are required for progression through the L3 stage of larval development and are thought to generally stimulate translation of most or all mRNAs ('global translation'); LET-363 activity is also necessary for normal development and physiology of the intestine; LET-363 proteins are expressed ubiquitously, including a maternal contribution to the early embryo.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

B0281.5 Aff_B0281.5 P W All gene names: B0281.5; 2C588; CE07716; WBGene00015112; WP:CE07716
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001 Fig1                                             
                                              hermaphrodite-enriched neuro, Jones et al 2001  Non                                
                                              dauer genes P<0.05, Murphy et al 2003  Fig2 Class2                                 
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, intrinsic, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

B0285.9 Aff_B0285.9 P W All gene names: ckb-2; B0285.9; 3F459; CE33591; NM_065479; WBGene00000512; WP:CE33591 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b signaling, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, Wang et al 2003  S3                                
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Early                                
                                              genes, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

B0286.4 Aff_B0286.4 P W All gene names: ntl-2; B0286.4; B0286.4a.1; B0286.4a.2; B0286.4c.1; B0286.4c.2; B0286.4c.3; B0286.4d.1; B0286.4d.2; B0286.4d.3; B0286.4d.4; B0286.4d.5; 2E664; CE03864; CE29537; CE29538; CE39662; NM_062371; NM_062372; NM_062373; WBGene00003825; WP:CE03864; WP:CE29537; WP:CE29538; WP:CE39662
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0303.14 Aff_B0303.14 P W All gene names: B0303.14; 3J804; CE00003; WBGene00015132; WP:CE00003 WormBase description: Giant secretory protein I-C
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0303.8 Aff_B0303.8 P W All gene names: sdz-1; B0303.8; 3J788; CE00001; WBGene00015129; WP:CE00001
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown                                

B0310.2 Aff_B0310.2 P W All gene names: B0310.2; B0310.2.1; B0310.2.2; CE03875; WBGene00015138; WP:CE03875; XB120 WormBase description: C2H2-type zinc fingers
B0334.8 Aff_B0334.8 P W All gene names: age-1; daf-23; B0334.8; 2L810; CE23506; NM_064061; WBGene00000090; WP:CE23506 WormBase description: age-1 encodes the C. elegans ortholog of the phosphoinositide 3-kinase (PI3K) p110 catalytic subunit; AGE-1, supplied maternally and embryonically, is a central component of the C. elegans insulin-like signaling pathway, lying downstream of the DAF-2/insulin receptor and upstream of both the PDK-1 and AKT-1/AKT-2 kinases and the DAF-16 forkhead type transcription factor, whose negative regulation is the key output of the insulin signaling pathway; in accordance with its role in insulin signaling, AGE-1 activity is required for regulation of metabolism, life span, dauer formation, stress resistance, fertility, and embryonic development; although the age-1 expression pattern has not yet been reported, ectopic expression studies indicate that pan-neuronal age-1 expression is sufficient to rescue life-span defects, while neuronal, intestinal, or muscle expression can partially rescue dauer formation, and neuronal or muscle expression can rescue metabolic defects. WormBase CDS description: phosphatidylinositol 3-kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated                                                                  

B0336.2 Aff_B0336.2 P W All gene names: arf-1.2; arf-1; B0336.2; B0336.2.1; B0336.2.2; 3G805; ARF/1; CE00696; NM_065834; WBGene00000182; WP:CE00696 WormBase description: arf-1 encodes an ADP-ribosylation factor homolog required in vivo for embryonic development, fertility, locomotion, vulval development, and cuticular synthesis; ARF proteins are N-myristoylated GTPases that regulate membrane traffic and the actin cytoskeleton, and that activate both phospholipase D1 (PLD1) and phosphatidylinositol 4-phosphate 5-kinase. WormBase CDS description: ARF
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

B0336.3 Aff_B0336.3 P W All gene names: B0336.3; 3G803; CE29542; WBGene00015143; WP:CE29542
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

B0336.6 Aff_B0336.6 P W All gene names: B0336.6; B0336.6.1; B0336.6.2; 3G780; CE29545; WBGene00015146; WP:CE29545 WormBase description: B0336.6 encodes an Abl interactor ortholog, with an SH3 domain, required for embryonic development; mammalian Abl interactors are associated with synaptosomes, growth cone particles, and macropinocytic vesicles, and may regulate Rac-dependent cytoskeletal reorganization and Abl kinase activity; B0336.6's orthologs include human SSH3BP1 (ABI1; OMIM:603050, mutated in acute myeloid leukemia), ABI-2 (OMIM:606442), and NESH (OMIM:606363); B0336.6 binds UNC-53 in two-hybrid screens.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

B0393.1 Aff_B0393.1 P W All gene names: rps-0; B0393.1; B0393.1.1; B0393.1.2; 3F842; CE00854; NM_065577; WBGene00004469; WP:CE00854 WormBase description: rps-0 encodes a small ribosomal subunit SA protein that appears to function as both a ribosomal component and a laminin receptor; by homology, RPS-0 is predicted to play roles in protein biosynthesis and cell adhesion; in C. elegans, RPS-0 activity is required for embryonic and germline development, vulval morphogenesis, and the overall health of the animal. WormBase CDS description: 40S ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0403.4 Aff_B0403.4 P W All gene names: tag-320; B0403.4; CE03880; WBGene00015168; WP:CE03880; XH686 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: protein disulfide-isomerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

B0410.2 Aff_B0410.2 P W All gene names: vang-1; B0410.2; CE06708; CE27572; NM_076099; NM_076100; WBGene00015171; WP:CE06708; WP:CE27572; XD507
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0412.3 Aff_B0412.3 P W All gene names: B0412.3; B0412.3.1; B0412.3.2; 3B425; CE03884; WBGene00015173; WP:CE03884
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

B0414.5 Aff_B0414.5 P W All gene names: cpb-3; B0414.5; 1G366; CE07735; NM_059279; WBGene00000772; WP:CE07735 WormBase description: The cbp-3 gene encodes a cytoplasmic polyadenylation element binding (CPEB) protein homolog. WormBase CDS description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

B0414.8 Aff_B0414.8 P W All gene names: B0414.8; 1G380; CE30413; CE36910; WBGene00015176; WP:CE30413; WP:CE36910
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0416.5 Aff_B0416.5 P W All gene names: B0416.5; B0416.5a.1; B0416.5a.2; CE02435; CE29548; WBGene00015181; WP:CE02435; WP:CE29548; XJ888
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

B0457.1 Aff_B0457.1 P W All gene names: lat-1; B0457.1; 2J197; CE02945; CE32789; CE36086; NM_063493; NM_182149; WBGene00002251; WP:CE02945; WP:CE32789; WP:CE36086 WormBase description: lat-1 encodes a predicted latrophilin that affects embryonic elongation, pharyngeal development, and reproductive organ formation; apically localized in developing epithelia and localized to presynaptic surfaces in neurons.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

B0462.3 Aff_B0462.3 P W All gene names: fbxb-119; B0462.3; 5S797; CE15556; WBGene00007182; WP:CE15556
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 daf-16 Resveratrol                                                     

B0464.5 Aff_B0464.5 P W All gene names: rsk-1; spk-1; srk-1; B0464.5; B0464.5b.1; B0464.5b.2; B0464.5c.1; B0464.5c.2; 3K551; CE20457; CE36373; CE36580; NM_066679; WBGene00004980; WP:CE20457; WP:CE36373; WP:CE36580 WormBase description: spk-1 encodes a serine/threonine kinase orthologous to the highly conserved serine/arginine-rich protein kinases (SRPKs) that phosphorylate SR proteins, essential components of the pre-mRNA splicing machinery; SPK-1, required for embryogenesis and germline development, can directly bind and phosphorylate RSP-3 (CeSF2/ASF), an SR splicing factor homolog; SPK-1 is expressed predominantly in the adult germline; SPK-1 is homologous to human RSK2, which when mutated leads to Coffin-Lowry syndrome (OMIM:303600). WormBase CDS description: Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0491.7 Aff_B0491.7 P W All gene names: B0491.7; 2L641; CE02109; WBGene00007194; WP:CE02109 WormBase description: B0491.7 encodes a putative diphthine synthase orthologous to S. cerevisiae DPH5; DPH5 is an S-adenosylmethionine:EF-2 methyltransferase required for the enzymatic conversion of 3-amino-3-carboxypropyl-histidine to diphthine; DPH5 adds at least the last two of the three methyl groups present in diphthine, and is homologous to bacterial AdoMet:uroporphyrinogen III methyltransferases. WormBase CDS description: diphthine synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

B0495.7 Aff_B0495.7 P W All gene names: B0495.7; B0495.7.1; B0495.7.2; 2H992; CE29550; WBGene00015206; WP:CE29550
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

B0511.10 Aff_B0511.10 P W All gene names: eif-3.E; B0511.10; 1L218; CE17349; NM_060384; WBGene00001228; WP:CE17349 WormBase description: eif-3.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

B0511.9 Aff_B0511.9 P W All gene names: B0511.9; 1L216; CE17348; CE26854; WBGene00015235; WP:CE17348; WP:CE26854
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

B0563.1 Aff_B0563.1 P W All gene names: B0563.1; CE02439; WBGene00015261; WP:CE02439; XJ787
C01F1.2 Aff_C01F1.2 P W All gene names: C01F1.2; 2E591; CE06743; WBGene00015297; WP:CE06743 WormBase description: C01F1.2 is orthologous to the human gene SCO (CYTOCHROME OXIDASE DEFICIENT, YEAST) HOMOLOG 1 (SCO1; OMIM:603644), which when mutated leads to early-onset hepatic failure; the C01F1.2 protein is predicted to be mitochondrial with 68% accuracy.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C01F6.5 Aff_C01F6.5 P W All gene names: aly-1; ref-1; C01F6.5; 4J873; CE02954; NM_069187; WBGene00000120; WP:CE02954 WormBase description: RNA recognition motif. (aka RRM, RBD, or RNP domain)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, mixed oogenesis soma, Romagnolo et al 2002                             
                                              Fig3b Metabolism, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C01G12.3 Aff_C01G12.3 P W All gene names: C01G12.3; 2O868; CE15573; WBGene00007244; WP:CE15573
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, wt males vs glp4 male enriched ,                                
                                              Reinke et al 2004, spermatogenesis enriched genes,                                 
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, shared sperm                                                                 

C01G6.5 Aff_C01G6.5 P W All gene names: C01G6.5; 2J566; CE00867; WBGene00007227; WP:CE00867 WormBase description: Forkhead-associated (FHA) domain
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, list of                             
                                              genes in cluster E                                                                 

C01G6.8 Aff_C01G6.8 P W All gene names: cam-1; kin-8; C01G6.8; 2J586; CE24774; CE32563; CE39126; WBGene00000289; WP:CE24774; WP:CE32563; WP:CE39126 WormBase description: The cam-1 gene encodes a receptor tyrosine kinase of the immunoglobulin superfamily that is orthologous to human ROR1 (OMIM:602336) and ROR2 (OMIM:602337, mutation of which leads to type B brachydactyly) and is required for locomotion, cell migration, asymmetric cell division, axon outgrowth, and dauer formation; CAM-1 is broadly expressed during embryogenesis and larval development with expression first appearing at the 200-cell stage of embryogenesis.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C01G8.2 Aff_C01G8.2 P W All gene names: cln-3.2; C01G8.2; C01G8.2.1; C01G8.2.2; 1F844; CE07802; NM_059155; WBGene00000540; WP:CE07802 WormBase description: cln-3.2 encodes a predicted transmembrane protein that comprises one of three C. elegans homologs of human CLN3 (OMIM:607042, mutations are associated with Batten disease (also known as juvenile neuronal ceroid lipofuscinosis), a recessively inherited childhood neurodegenerative lysosomal storage disease); loss of cln-3.2 activity via large-scale RNAi screens has been reported to result in either no defects or in embryonic lethality.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C01H6.9 Aff_C01H6.9 P W All gene names: C01H6.9; 1H806; CE07824; WBGene00007258; WP:CE07824 WormBase description: C01H6.9 encodes a homolog of haploid germ cell-specific nuclear protein kinase (haspin) that specifically binds GOA-1 in yeast two-hybrid assays; C01H6.9 is expressed in PHB sensory neurons and PVT interneurons in the tail, several unidentified neurons in the head (with projections to the nose and nerve ring), and intestinal cells, with mainly nuclear localization; C01H6.9 has no obvious function or phenotype in RNAi assays, either alone or with inactivation of a close paralog (F22H10.5). WormBase CDS description: Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, Romagnolo et al 2002  Fig3b Unkown                                     

C02E11.1 Aff_C02E11.1 P W All gene names: C02E11.1; C02E11.1a.1; C02E11.1a.2; 5B508; CE28528; CE32040; WBGene00015344; WP:CE28528; WP:CE32040
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit, Wang et al 2003  S7 SAGE                             
                                              genes in the dataset                                                               

C02F12.4 Aff_C02F12.4 P W All gene names: tag-52; C02F12.4; CE03899; WBGene00006431; WP:CE03899; XE294 WormBase description: guanine-nucleotide releasing factor of the CDC24 family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C02F5.12 Aff_C02F5.9 P W All gene names: C02F5.12; 3J330; CE39127; WBGene00015352; WP:CE39127
C03B8.4 Aff_C03B8.4 P W All gene names: lin-13; lin-51; C03B8.4; 3I790; CE30419; NM_066277; WBGene00003002; WP:CE30419 WormBase description: Gene Function : lin-13 encodes a large (2248-residue) nuclear protein with multiple zinc fingers of the C2H2 class and a LXCXE retinoblastoma protein-binding motif, that is required for survival through larval development and for negative regulation of vulval fates during postembryonic development. WormBase CDS description: Zinc finger
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C04F12.10 Aff_C04F12.10 P W All gene names: Ce-face-1; fce-1; C04F12.10; 1K288; CE19683; NM_060181; WBGene00001405; WP:CE19683 WormBase description: fce-1 encodes an ortholog of 'farnesylated-proteins converting enzyme 1' (FACE-1), and thus probably enables post-translational processing of proteins (such as LET-60/RAS) carrying a C-terminal CaaX motif; FCE-1 protein probably accounts for the EDTA-sensitive, tosylphenylalanylchloromethane-insensitive component of CaaX-proteolytic activity in membrane extracts from C. elegans, and FCE-1 can cleave a farnesylated peptide in vitro; the S. cerevisiae homolog of FCE-1 (Ste24p) cleaves the precursor of yeast a-factor mating pheromone after its farnesylated cysteine residue, and transgenic FCE-1 rescues a mating defect of mutant yeast lacking both the Ste24p and the Rce1p CaaX-proteases. WormBase CDS description: Zinc-binding metalloprotease domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C04F5.8 Aff_C04F5.8 P W All gene names: C04F5.8; 5F590; CE19672; WBGene00015450; WP:CE19672
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C05C8.4 Aff_C05C8.4 P W All gene names: gei-6; C05C8.4; 5H708; CE07922; NM_072435; WBGene00001563; WP:CE07922
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C05C8.6 Aff_C05C8.6 P W All gene names: C05C8.6; 5H716; CE07924; WBGene00015463; WP:CE07924
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C05D11.12 Aff_C05D11.12 P W All gene names: let-721; C05D11.12; C05D11.12.1; C05D11.12.2; 3H534; CE29662; NM_066014; WBGene00002855; WP:CE29662 WormBase description: The let-721 gene encodes an ortholog of the human gene SIMILAR TO ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE (ETFDH), which when mutated leads to glutaricaciduria type IIC (OMIM:231675). WormBase CDS description: YAAS
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Oxidation,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C05D11.7 Aff_C05D11.7 P W All gene names: C05D11.7; C05D11.7a.1; C05D11.7a.2; 3H506; CE29663; CE30480; WBGene00015484; WP:CE29663; WP:CE30480
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C05D12.4 Aff_C05D12.4 P W All gene names: C05D12.4; 2L721; CE02972; WBGene00007341; WP:CE02972
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C05D12.5 Aff_C05D12.5 P W All gene names: C05D12.5; 2L723; CE02973; WBGene00007342; WP:CE02973
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D2.10 Aff_C05D2.6 P W All gene names: C05D2.10; C05D2.10a.1; C05D2.10a.2; 3G688; CE26861; CE29560; WBGene00015470; WP:CE26861; WP:CE29560
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C05E11.1 Aff_C05E11.1 P W All gene names: C05E11.1; CE29561; WBGene00015492; WP:CE29561; XF209
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

C06C3.1 Aff_C06C3.1 P W All gene names: mel-11; C06C3.1; 2J657; CE20486; CE32566; CE32567; CE36682; NM_063593; WBGene00003196; WP:CE20486; WP:CE32566; WP:CE32567; WP:CE36682 WormBase description: ankyrin-like repeats
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C06E7.1 Aff_C06E7.1 P W All gene names: C06E7.1; 4G615; CE03957; CE32569; CE33515; CE37186; WBGene00015538; WP:CE03957; WP:CE32569; WP:CE33515; WP:CE37186 WormBase description: S-adenosylmethionine synthetase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                 
                                              Early genes, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

C07A12.4 Aff_C07A12.4 P W All gene names: pdi-2; C07A12.4; C07A12.4a.1; C07A12.4a.2; CE03972; CE31878; NM_076377; NM_182439; WBGene00003963; WP:CE03972; WP:CE31878; XF145 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Link et al 2003  T2 Abeta repressed,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C, Roy et                              
                                              al 2002  S3 muscle genes, ViswanathanM et al 2005  S2                              
                                              UPR genes, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C07E3.1 Aff_C07E3.1 P W All gene names: C07E3.1; 2K638; CE02118; CE23526; WBGene00007412; WP:CE02118; WP:CE23526
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C07G2.3 Aff_C07G2.3 P W All gene names: cct-5; C07G2.3; C07G2.3b.1; C07G2.3b.2; C07G2.3b.3; C07G2.3b.4; C07G2.3b.5; C07G2.3b.6; C07G2.3b.7; 3F590; CE02985; CE29569; NM_065514; WBGene00000380; WP:CE02985; WP:CE29569 WormBase description: A homolog of the mouse chaperonin Ccte that affects protein folding; it is expressed at all life stages.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C07G3.9 Aff_C07G3.9 P W All gene names: ugt-64; C07G3.9; 5D982; CE08000; WBGene00015577; WP:CE08000 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, GO                               
                                              categories                                                                         

C07H4.2 Aff_C07H4.2 P W All gene names: clh-5; C07H4.2; C07H4.2.1; C07H4.2.2; 2J386; CE27360; NM_063539; WBGene00000532; WP:CE27360 WormBase description: The clh-5 gene encodes a chloride channel, whose human homologs include CLC1 and CLCN5; the latter homolog is imvolved in receptor-mediated endocytosis. WormBase CDS description: chloride channel protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

C07H6.2 Aff_C07H6.2 P W All gene names: C07H6.2; 3I609; CE00756; WBGene00015579; WP:CE00756
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C07H6.4 Aff_C07H6.4 P W All gene names: C07H6.4; 3I591; CE00755; WBGene00015581; WP:CE00755 WormBase description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C07H6.5 Aff_C07H6.5 P W All gene names: cgh-1; C07H6.5; C07H6.5.1; C07H6.5.2; 3I586; CE00839; NM_066245; WBGene00000479; WP:CE00839 WormBase description: The ortholog of a RNA helicase ste13/ME31B/RCK/p54 that is required for oocyte and sperm function and the prevention of physiological germline-associated apoptosis; it is expressed in the early embryo and germline and localizes to P granules. WormBase CDS description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Murphy et al 2003  Fig2 Class2 shorten                                    
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              F, Reinke et al 2004, fem1 enriched genes, Reinke et al                            
                                              2004, Fig2b shared gemlines, Reinke et al 2004, list of                            
                                              genes in cluster order, Reinke et al 2004, oogenesis                               
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, wt males vs glp4 male                                    
                                              enriched , Reinke et al 2004, wt herm vs wt male                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C08B11.3 Aff_C08B11.3 P W All gene names: C08B11.3; 2I314; CE01473; WBGene00007433; WP:CE01473 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2 daf-16                            
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C08B6.7 Aff_C08B6.7 P W All gene names: C08B6.7; 5K612; CE05244; WBGene00007428; WP:CE05244 WormBase description: 59 protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

C08F1.8 Aff_C08F1.8 P W All gene names: C08F1.8; 2C92; CE08023; WBGene00015611; WP:CE08023 WormBase description: reverse transcriptase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C08H9.2 Aff_C08H9.2 P W All gene names: C08H9.2; 2K178; CE23530; WBGene00007463; WP:CE23530 WormBase description: high-density lipoprotein-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C09B8.7 Aff_C09B8.7 P W All gene names: pak-1; C09B8.7; C09B8.7a.1; C09B8.7a.2; C09B8.7c.1; C09B8.7c.2; C09B8.7e.1; C09B8.7e.2; C09B8.7e.3; CE06792; CE27670; CE33559; CE33561; CePAK; WBGene00003911; WP:CE06792; WP:CE27670; WP:CE33559; WP:CE33561; XG664 WormBase description: pak-1 is orthologous to the human gene P21-ACTIVATED KINASE 3 (PAK3; OMIM:300142), which when mutated leads to nonsyndromic mental retardation.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4 Early                              
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

C09D8.1 Aff_C09D8.1 P W All gene names: ptp-3; ptp-3A; ptp-3B; ypp-1; C09D8.1; 2L301; CE30244; CE30245; CE32793; WBGene00004215; WP:CE30244; WP:CE30245; WP:CE32793; YPP/1 WormBase description: ptp-3 encodes a receptor-like tyrosine phosphatase orthologous to the LAR (Leukocyte Common Antigen Related, OMIM:179590) subfamily of receptor-like tyrosine phosphatases that contain extracellular immunoglobulin-like and fibronectin type III domains and have been implicated in linking cell adhesion to intracellular phosphotyrosine levels; PTP-3 plays a role in gastrulation and epidermal development and functions partly redundantly with the VAB-1 Eph receptor and ephrins VAB-2 and EFN-4 to regulate embryonic morphogenesis; PTP-3 is expressed in many tissues during early embryogenesis, but expression later becomes localized to neuronal processes and epithelial adherens junctions.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C09G4.4 Aff_C09G4.4 P W All gene names: C09G4.4; CE03981; WBGene00044001; WP:CE03981
C09H6.1 Aff_C09H6.1 P W All gene names: spr-4; C09H6.1; 1I685; CE15609; CE30487; WBGene00005009; WP:CE15609; WP:CE30487 WormBase description: Zinc finger, C2H2 type (11 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C09H6.2 Aff_C09H6.2 P W All gene names: lin-10; C09H6.2; 1I686; CE15610; CE27060; NM_059825; WBGene00002999; WP:CE15610; WP:CE27060 WormBase description: The lin-10 gene encodes a PDZ and PTB domain-containing protein that is homologous to mammalian Munc interacting proteins (Mint1, OMIM:602414) and is required for polarized protein localization; LIN-10 is required for proper localization of the LET-23 EGF receptor to the basolateral membrane of the vulval precursor cells and for proper postsynaptic localization of GLR-1, an AMPA-type glutamate receptor in interneurons; LIN-10 is detected in the cytoplasm, membrane, and at particularly high levels in the Golgi. WormBase CDS description: Phosphotyrosine interaction domain (PTB/PID)., PDZ domain (Also known as DHR or GLGF). (2 domains)
C10C6.1 Aff_C10C6.1 P W All gene names: kin-4; C10C6.1; 4M211; CE39132; NM_069760; WBGene00002192; WP:CE39132 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S7 SAGE genes in the dataset                                                 

C10G11.5 Aff_C10G11.5 P W All gene names: pnk-1; C10G11.5; C10G11.5c.1; C10G11.5c.2; 1G873; CE29080; CE30488; CE33269; NM_059414; NM_170878; NM_170879; WBGene00004068; WP:CE29080; WP:CE30488; WP:CE33269
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, Reinke et al 2004, herm soma enriched genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C11G6.3 Aff_C11G6.3 P W All gene names: C11G6.3; CE05257; NM_078257; WBGene00007524; WP:CE05257 WormBase description: PHD-finger.
C13B7.5 Aff_Y45G12C.G P W All gene names: str-119; C13B7.5; C13B7.A; 5C904; CE20503; NM_071265; WBGene00006170; WP:CE20503 WormBase description: 7TM chemoreceptor, str family
C13F10.4 Aff_C13F10.4 P W All gene names: C13F10.4; 5H686; CE08145; WBGene00015743; WP:CE08145
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C13F10.6 Aff_C13F10.6 P W All gene names: C13F10.6; 5H700; CE08147; WBGene00015745; WP:CE08147
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

C14B9.4 Aff_C14B9.4, Aff_K06H7.1 P W All gene names: plk-1; C14B9.4; C14B9.4a.1; C14B9.4a.2; 3J193; CE26649; CE30602; WBGene00004042; WP:CE26649; WP:CE30602; plc1 WormBase description: plk-1 encodes a serine/threonine polo-like kinase homologous to Drosophila polo and Saccharomyces cerevisiae CDC5; PLK-1 is required for meiotic nuclear envelope breakdown, polar body formation and extrusion, and proper chromosome segregation during meiosis, and additionally, may play a role in germline development; PLK-1 is proposed to phosphorylate REC-8, a meiotic-specific cohesin, thus promoting REC-8 degradation and subsequent separation of sister chromatids; PLK-1 is localized diffusely in the cytoplasm of mature oocytes, but during meiosis I becomes associated with pre-metaphase chromatin and then at anaphase with chromatin and the area between dividing chromatin; in embryos, PLK-1 localizes to centrosomes, metaphase chromatin, and during telophase, to the area between dividing chromatin.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              males vs glp4 male enriched , Reinke et al 2004, wt                                
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C14C10.5 Aff_C14C10.5 P W All gene names: C14C10.5; 5N87; CE05284; WBGene00007588; WP:CE05284 WormBase description: Human mRNA (KIAA0077) product like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C14C11.7 Aff_C14C11.7 P W All gene names: C14C11.7; 5G146; CE06826; WBGene00015769; WP:CE06826
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C15H9.6 Aff_C15H9.6 P W All gene names: hsp-3; C15H9.6; C15H9.6.1; C15H9.6.2; C15H9.6.3; CE08177; NM_076618; WBGene00002007; WP:CE08177; XG708 WormBase description: hsp-3 encodes a heat shock response 70 (hsp70) protein orthologous to human glucose regulated protein 78 (grp78/BiP, OMIM:138120); HSP-3 likely functions as a molecular chaperone, and is expressed constitutively (expression is not heat inducible) throughout development with greatest abundance during the L1 larval stage; HSP-3 contains a long hydrophobic amino terminus and a carboxyl terminal KDEL sequence suggesting that it may be retained in the endoplasmic reticulum. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig2a heat shock                                             

C16A3.1 Aff_C16A3.1 P W All gene names: C16A3.1; C16A3.1a.1; C16A3.1a.2; 3H483; CE27688; CE30605; CE30606; WBGene00015806; WP:CE27688; WP:CE30605; WP:CE30606 WormBase description: C16A3.1 is orthologous to the human gene SMARCAL1 (SMARCAL1; OMIM:606622), which when mutated leads to disease
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C16A3.4 Aff_C16A3.4 P W All gene names: C16A3.4; 3H473; CE04004; WBGene00015809; WP:CE04004
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig5 conserved                            
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C16C10.7 Aff_C16C10.7 P W All gene names: rnf-5; C16C10.7; 3F254; CE01498; NM_065429; WBGene00004381; WP:CE01498 WormBase description: This gene encodes a homolog of mammalian RNF5, a C3HC4 (RING-finger) zinc-finger protein. WormBase CDS description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C17C3.7 Aff_C17C3.7 P W All gene names: hlh-25; C17C3.7; 2F825; CE04027; NM_062662; WBGene00001964; WP:CE04027
C17C3.8 Aff_C17C3.8 P W All gene names: hlh-26; C17C3.8; 2F822; CE04028; NM_062661; WBGene00001965; WP:CE04028
C17D12.7 Aff_C17D12.7 P W All gene names: C17D12.7; 1M196; CE23554; WBGene00007640; WP:CE23554
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C17E4.2 Aff_C17E4.2 P W All gene names: C17E4.2; 1J991; CE08251; WBGene00007642; WP:CE08251 WormBase description: myosin heavy chain like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E                                                                          

C17E4.6 Aff_C17E4.8 P W All gene names: C17E4.6; 1K7; CE25780; WBGene00007645; WP:CE25780 WormBase description: YL-1 protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

C17G1.4 Aff_C17G1.4 P W All gene names: C17G1.4; CE08283; CE37318; WBGene00007651; WP:CE08283; WP:CE37318; XK546
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, fem1 enriched                                
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

C18A3.2 Aff_C18A3.2 P W All gene names: C18A3.2; 2G9; CE27707; WBGene00015940; WP:CE27707
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              F, Reinke et al 2004, list of genes in cluster order,                              
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C18B2.4 Aff_C18B2.4 P W All gene names: C18B2.4; CE04043; WBGene00015955; WP:CE04043; XE224
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C18E3.2 Aff_C18E3.2 P W All gene names: C18E3.2; C18E3.2.1; C18E3.2.2; 1E779; CE30249; WBGene00015971; WP:CE30249 WormBase description: The C18E3.2 gene encodes a homolog of Swp73/BAF60, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; C18E3.2 is probably required during mitosis of the T cells for asymmetric cell division.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002  Fig3D                                  
                                              Oocyte-en, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C18E9.3 Aff_C18E9.3 P W All gene names: pqn-14; C18E9.3; C18E9.3c.1; C18E9.3c.2; C18E9.3c.3; 2J258; CE20519; CE32804; CE38277; NM_063508; NM_063509; WBGene00004105; WP:CE20519; WP:CE32804; WP:CE38277 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen                                           

C23H3.1 Aff_C23H3.1 P W All gene names: cog-4; egl-26; egl-48; C23H3.1; 2A377; CE08320; NM_061251; WBGene00001193; WP:CE08320 WormBase description: egl-26 encodes a novel protein that contains an H-box/NC domain that is highly conserved with CBP01801 in C. briggsae and is required for embryonic and larval viability, egg-laying, fertility, and affects the connection of the uterus to the vulva; required in the primary vulval lineage for vulF morphogenesis and is expressed in many cells, but is expressed near the vulva and uterus only during the L4 larval stage.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, mixed oogenesis soma, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

C24H11.3 Aff_C24H11.3 P W All gene names: tbx-38; C24H11.3; 3M874; CE18526; NM_067125; WBGene00006557; WP:CE18526 WormBase description: T-box
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

C25A1.1 Aff_C25A1.1 P W All gene names: C25A1.1; 1K739; CE08366; WBGene00007705; WP:CE08366
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig1-4                                    
                                              conserved w/ Drosoph                                                               

C25A1.10 Aff_C25A1.10 P W All gene names: dao-5; C25A1.10; 1K764; CE08376; CE38279; WBGene00000931; WP:CE08376; WP:CE38279 WormBase description: dao-5 encodes a predicted nucleolar phosphoprotein related to Saccharomyces cerevisiae SRP40 and the vertebrate Nopp140 proteins that may play a role in rRNA gene transcription and nucleolar structural organization; dao-5 expression is negatively regulated by the DAF-2/insulin-like receptor and positively regulated by the DAF-16/fork-head transcription factor, suggesting that dao-5 may be involved in life-span determination; dao-5 is strongly expressed in dauer larvae.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

C25A1.5 Aff_C25A1.5 P W All gene names: C25A1.5; 1K755; CE08370; WBGene00007707; WP:CE08370 WormBase description: Yeast hypothetical 44.9 KD protein like
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

C25B8.4 Aff_C25B8.4 P W All gene names: C25B8.4; CE27087; CE34259; CE34260; WBGene00016088; WP:CE27087; WP:CE34259; WP:CE34260; XH236 WormBase description: asialoglycoprotein receptor
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C25F6.1 Aff_C25F6.1 P W All gene names: C25F6.1; CE02494; WBGene00016102; WP:CE02494; XG107
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C25G4.10 Aff_C25G4.10 P W All gene names: C25G4.10; 4N233; CE28206; WBGene00007736; WP:CE28206 WormBase description: fibronectin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C25G4.5 Aff_C25G4.5 P W All gene names: dpy-26; C25G4.5; 4N212; CE08398; NM_069977; WBGene00001085; WP:CE08398 WormBase description: SDC-1, SDC-2, and SDC-3 proteins form a complex (detectable by coimmunoprecipitation); these three proteins, in turn, colocalize with DPY-26, DPY-27, and MIX-1 proteins both on a transgenic her-1(+) array and on the X chromosome.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen                                                       

C26C6.1 Aff_C26C6.1 P W All gene names: tag-185; C26C6.1; C26C6.1b.1; C26C6.1b.2; C26C6.1b.3; 1I79; CE30254; CE38280; WBGene00007042; WBGene00007738; WP:CE30254; WP:CE38280 WormBase description: HMG (high mobility group) box, Bromodomain (5 domains), Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C26E6.4 Aff_C26E6.4 P W All gene names: phi-14; rpb-2; C26E6.4; 3G33; CE01162; NM_065646; WBGene00016140; WP:CE01162 WormBase description: DNA-directed RNA polymerase II
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C27A2.6 Aff_C27A2.6 P W All gene names: dsh-2; C27A2.6; 2F370; CE27097; NM_062536; WBGene00001102; WP:CE27097 WormBase description: dsh-2 encodes a protein containing a DIX domain, a DEP domain, and a PDZ domain that is required for embryonic viability and functions in Wnt pathway signaling between the embryonic blastomeres P2 and EMS with respect to endoderm specification and to orient the division axis of the EMS cell; expressed from the four-cell embryo stage, and is primarily associated with membranes.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig4 Wnt signaling                              
                                              genes, Reinke et al 2004, fem1 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

C27B7.4 Aff_C27B7.4 P W All gene names: C27B7.4; 4J665; CE17477; WBGene00007761; WP:CE17477 WormBase description: DNA repair protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

C27D11.1 Aff_C27D11.1 P W All gene names: eif-3.A; egl-45; C27D11.1; 3I914; CE00543; NM_066297; WBGene00001209; WP:CE00543 WormBase description: egl-45 encodes a homolog of eukaryotic translation initiation factor 3, subunit 10, that affects development of the HSNs that affect egg laying.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C27H5.3 Aff_C27H5.3 P W All gene names: C27H5.3; C27H5.3.1; C27H5.3.2; C27H5.3.3; 2H445; CE27099; WBGene00016173; WP:CE27099 WormBase description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C27H6.2 Aff_C27H6.2 P W All gene names: ruvb-1; C27H6.2; 5K460; CE08426; NM_073166; WBGene00007784; WP:CE08426 WormBase description: Yeast hypothetical 50.5 KD protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C28H8.3 Aff_C28H8.3 P W All gene names: C28H8.3; C28H8.3.1; C28H8.3.2; C28H8.3.3; 3H3; CE29195; WBGene00016194; WP:CE29195
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C29E4.2 Aff_C29E4.2 P W All gene names: tag-261; C29E4.2; 3J33; CE30620; WBGene00016202; WP:CE30620
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

C29F7.4 Aff_C29F7.4 P W All gene names: fkh-3; C29F7.4; CE08445; NM_077836; WBGene00001435; WP:CE08445; XO40 WormBase description: fork head domain protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C29F7.5 Aff_C29F7.5 P W All gene names: fkh-4; tag-39; C29F7.5; CE08446; NM_077837; WBGene00001436; WP:CE08446; XO46 WormBase description: fkh-4 encodes a member of the forkhead domain transcription factor family. WormBase CDS description: fork head domain protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, mixed oogenesis                                 
                                              soma, Reinke et al 2004, GO categories, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C29H12.2 Aff_C29H12.2 P W All gene names: C29H12.2; C29H12.2.1; C29H12.2.2; C29H12.2.3; 2G415; CE02516; WBGene00016235; WP:CE02516
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

C30F12.5 Aff_C30F12.5 P W All gene names: C30F12.5; 1H568; CE16885; WBGene00016264; WP:CE16885
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S7 SAGE                             
                                              genes in the dataset, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S8 SAGE genes in the                               
                                              dauer exit, Wang et al 2003  S4 genes pass two-wayANOVA                            
                                              P0                                                                                 

C30H7.2 Aff_C30H7.2 P W All gene names: C30H7.2; C30H7.2a.1; C30H7.2a.2; C30H7.2a.3; C30H7.2a.4; 1F986; CE27807; CE39231; WBGene00016278; WP:CE27807; WP:CE39231
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

C31C9.2 Aff_C31C9.2 P W All gene names: C31C9.2; C31C9.2.1; C31C9.2.2; 2N928; CE08497; WBGene00007836; WP:CE08497 WormBase description: C31C9.2 is orthologous to the human gene PHOSPHOGLYCERATE DEHYDROGENASE (PHGDH; OMIM:606879), which when mutated leads to phosphoglycerate dehydrogenase deficiency. WormBase CDS description: D-3-Phosphoglycerate dehydrogenase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

C31E10.5 Aff_C31E10.5 P W All gene names: C31E10.5; CE08505; WBGene00007846; WP:CE08505; XO610
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Romagnolo                            
                                              et al 2002  Fig3b Unkown, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C32B5.10 Aff_C32B5.10 P W All gene names: C32B5.10; 2B238; CE08518; WBGene00016303; WP:CE08518
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C32D5.5 Aff_C32D5.5 P W All gene names: tag-337; C32D5.5; C32D5.5.1; C32D5.5.2; 2G620; CE01845; WBGene00016313; WP:CE01845
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C32F10.6 Aff_C32F10.6 P W All gene names: crf-2; nhr-2; C32F10.6; C32F10.7; 1G396; CE39002; NM_059288; WBGene00003601; WP:CE39002 WormBase description: nhr-2 encodes a member of the nuclear hormone receptor family that is required for embryonic viability and morphogenesis; expressed during embryogenesis. WormBase CDS description: nuclear homone receptor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C33A12.12 Aff_C33A12.12 P W All gene names: C33A12.12; 4K248; CE15665; WBGene00007887; WP:CE15665 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C33A12.3 Aff_C33A12.3 P W All gene names: C33A12.3; 4K278; CE05349; WBGene00007882; WP:CE05349
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Reinke et al 2004, wt herm vs wt male                            
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C33E10.1 Aff_C33E10.1 P W All gene names: C33E10.1; CE34265; WBGene00016345; WP:CE34265; XR919 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C34C12.4 Aff_C34C12.4 P W All gene names: C34C12.4; C34C12.4.1; C34C12.4.2; 3E558; CE31434; WBGene00007923; WP:CE31434
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, list of genes in cluster D, Reinke                              
                                              et al 2004, fem3 enriched genes                                                    

C35D10.10 Aff_C35D10.10 P W All gene names: C35D10.10; 3F950; CE01191; WBGene00016446; WP:CE01191
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C35D6.3 Aff_C35D6.3 P W All gene names: C35D6.3; 4R99; CE15682; WBGene00007960; WP:CE15682
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C35D6.4 Aff_C35D6.4 P W All gene names: C35D6.4; 4R103; CE15683; WBGene00007961; WP:CE15683 WormBase description: Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C35E7.1 Aff_C35E7.1 P W All gene names: C35E7.1; 1L423; CE36273; NM_060435; WBGene00016453; WP:CE36273
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C35E7.3 Aff_C35E7.3 P W All gene names: C35E7.3; 1L415; CE17516; WBGene00016455; WP:CE17516
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C35E7.5 Aff_C35E7.5 P W All gene names: C35E7.5; 1L403; CE17518; CE32817; WBGene00016457; WP:CE17518; WP:CE32817
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C36B1.12 Aff_C36B1.12 P W All gene names: imp-1; C36B1.12; C36B1.12a.1; C36B1.12a.2; C36B1.12c.1; C36B1.12c.2; 1J331; CE05379; CE38290; CE38291; WBGene00007979; WP:CE05379; WP:CE38290; WP:CE38291
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C36E8.1 Aff_C36E8.1 P W All gene names: C36E8.1; C36E8.1.1; C36E8.1.2; 3F90; CE00909; WBGene00007980; WP:CE00909
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C36F7.1 Aff_C36F7.1 P W All gene names: irx-1; C36F7.1; 1K114; CE17526; WBGene00007984; WP:CE17526 WormBase description: Homeobox domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C37H5.6 Aff_C37H5.6 P W All gene names: C37H5.6; C37H5.6b.1; C37H5.6b.2; C37H5.6b.3; 5F298; CE08630; CE29709; WBGene00016509; WP:CE08630; WP:CE29709 WormBase description: adenylosuccinate synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C38D4.3 Aff_C38D4.3 P W All gene names: C38D4.3; 3F881; CE36378; WBGene00008004; WP:CE36378
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, intrinsic,                                  
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2 daf-16                            
                                              Resveratrol                                                                        

C38D4.5 Aff_C38D4.5 P W All gene names: tag-325; C38D4.5; C38D4.5.1; C38D4.5.2; 3F891; CE00918; WBGene00008006; WP:CE00918 WormBase description: chimaerin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              F, Reinke et al 2004, fem1 enriched genes, Reinke et al                            
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, mixed oogenesis soma                                                         

C39B5.2 Aff_C39B5.C P W All gene names: C39B5.2; 3D325; CE23578; WBGene00016520; WP:CE23578
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes                                                                              

C39E9.12 Aff_C39E9.12 P W All gene names: C39E9.12; 4N859; CE39690; WBGene00008035; WP:CE39690
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, Fig2b shared gemlines, Reinke et al 2004, list of                            
                                              genes in cluster order, Reinke et al 2004, oogenesis                               
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, wt males vs glp4 male                                    
                                              enriched , Reinke et al 2004, wt herm vs wt male                                   
                                              enriched gen, Reinke et al 2004, GO categories,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C39E9.14 Aff_C39E9.14 P W All gene names: dli-1; C39E9.14; C39E9.14a.1; C39E9.14a.2; 4N862; CE30892; CE30893; NM_070117; NM_070118; WBGene00001007; WP:CE30892; WP:CE30893
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C40H1.6 Aff_C40H1.6 P W All gene names: C40H1.6; 3K421; CE00114; WBGene00008041; WP:CE00114
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Roy et al 2002  S3 muscle genes,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C41C4.6 Aff_C41C4.6 P W All gene names: ulp-4; C41C4.6; 2I423; CE01521; NM_063302; WBGene00006739; WP:CE01521
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C41D11.7 Aff_C41D11.7 P W All gene names: C41D11.7; 1F20; CE36108; WBGene00016566; WP:CE36108 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

C41H7.3 Aff_C41H7.3 P W All gene names: C41H7.3; 2D297; CE08674; WBGene00016573; WP:CE08674
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C41H7.6 Aff_C41H7.6 P W All gene names: C41H7.6; 2D291; CE08677; WBGene00016576; WP:CE08677
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

C42C1.11 Aff_C42C1.11 P W All gene names: AP-1; C42C1.11; C42C1.11a.1; C42C1.11a.2; C42C1.11c.1; C42C1.11c.2; 4N45; CE24840; CE33564; CE33565; WBGene00016589; WP:CE24840; WP:CE33564; WP:CE33565 WormBase description: peptidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C42C1.5 Aff_C42C1.5 P W All gene names: tag-335; C42C1.5; 4N40; CE16911; WBGene00016583; WP:CE16911 WormBase description: guanyltransferase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C43E11.7 Aff_C43E11.7 P W All gene names: ndx-7; C43E11.7; 1E808; CE30504; NM_058935; WBGene00003584; WP:CE30504 WormBase description: ndx-7 encodes a NUDIX hydrolase; by sequence comparison, NDX-7 is predicted to function as a pyrophosphatase, and is most closely related to the mouse RP2 protein that has unknown substrate specificity but is regulated transcriptionally by the presence of androgens; in C. elegans, loss of ndx-7 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, consistent with the proposed nonessential roles for Nudix proteins in eliminating potentially toxic nucleotide metabolites from cells and modulating levels of metabolic intermediates by shuttling them into alternative biochemical pathways.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C43H8.2 Aff_C43H8.2 P W All gene names: C43H8.2; 1L199; CE19378; WBGene00016622; WP:CE19378
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C44B9.5 Aff_C44B9.5 P W All gene names: C44B9.5; 3L989; CE37755; WBGene00008082; WP:CE37755 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
C44C8.2 Aff_C44C8.2 P W All gene names: C44C8.2; 4B653; CE17542; WBGene00016647; WP:CE17542
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C44H4.7 Aff_C44H4.7 P W All gene names: eor-2; C44H4.7; CE31445; CE31446; WBGene00001325; WP:CE31445; WP:CE31446; XP225 WormBase description: eor-2 encodes an unfamiliar protein, similar to CG17233 in Drosophila and KIAA1205 in H. sapiens, required for signal transduction by both RAS and Wnt pathways in both excretory system development and P12 fate specification.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C46A5.9 Aff_C46A5.9 P W All gene names: hcf-1; C46A5.9; 4I536; CE26914; NM_068878; WBGene00001827; WP:CE26914
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C46C2.2 Aff_C46C2.2 P W All gene names: C46C2.2; C46C2.2.1; C46C2.2.2; 4J983; CE32832; WBGene00008110; WP:CE32832 WormBase description: transport protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 daf-16 Resveratrol                                                  

C46E10.4 Aff_C46E10.4 P W All gene names: C46E10.4; 2E9; CE29724; WBGene00016710; WP:CE29724
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C46F11.2 Aff_C46F11.2 P W All gene names: C46F11.2; C46F11.2b.1; C46F11.2b.2; 3E741; CE08773; CE17558; WBGene00008117; WP:CE08773; WP:CE17558 WormBase description: C46F11.2 is orthologous to human MITOCHONDRIAL GLUTATHIONE REDUCTASE (GSR; OMIM:138300); GSR deficiency has been associated with hemolytic anemia.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Climbing, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

C47B2.3 Aff_C47B2.3 P W All gene names: mel-45; tba-2; C47B2.3; C47B2.3.1; C47B2.3.2; C47B2.3.3; 1N558; CE17563; NM_060869; TUBA4B; WBGene00006529; WP:CE17563 WormBase description: tba-2 encodes a tubulin with similarity to the murine alpha-2 chain; in small scale assays tba-1(RNAi) has no phenotype and was found to function redundantly with its isotype tba-1 to form spindle structures in embryos with the tbb-1 and tbb-2 beta-isotypes. WormBase CDS description: Tubulin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

C47B2.5 Aff_C47B2.5 P W All gene names: eif-6; C47B2.5; C47B2.5.1; C47B2.5.2; 1N561; CE17565; NM_060871; WBGene00001234; WP:CE17565 WormBase description: EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, GO                              
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C47D12.1 Aff_C47D12.1 P W All gene names: trr-1; C47D12.1; C47D12.1b.1; C47D12.1b.2; 2L952; CE36692; CE36693; CE38054; WBGene00007028; WP:CE36692; WP:CE36693; WP:CE38054 WormBase description: Yeast YHP9 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C47E12.4 Aff_C47E12.4 P W All gene names: pyp-1; C47E12.4; C47E12.4c.1; C47E12.4c.2; C47E12.4c.3; C47E12.4d.1; C47E12.4d.2; C47E12.4d.3; 4K760; CE05448; CE33767; CE33768; CE33769; WBGene00008149; WP:CE05448; WP:CE33767; WP:CE33768; WP:CE33769 WormBase description: inorganic pyrophosphatase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C47F8.1 Aff_C47F8.1 P W All gene names: C47F8.1; 1M929; CE17570; WBGene00008157; WP:CE17570 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C47G2.5 Aff_C47G2.5 P W All gene names: C47G2.5; C47G2.5.1; C47G2.5.2; 2L591; CE38162; WBGene00008166; WP:CE38162
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma                                            

C48E7.2 Aff_C48E7.2 P W All gene names: C48E7.2; 1G833; CE08817; WBGene00016750; WP:CE08817
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Romagnolo et al 2002  Fig3b                                  
                                              Protein Synthesis                                                                  

C49A1.4 Aff_C49A1.4 P W All gene names: eya-1; C49A1.4; C49A1.4b.1; C49A1.4b.2; 1O814; CE15722; CE36113; WBGene00001377; WP:CE15722; WP:CE36113 WormBase description: eya-1 encodes a protein orthologous to Drosophila EYES ABSENT (EYA), human EYA1, and human EYA4; the human genes EYA1 and EYA4, when mutated, lead to branchiootorenal dysplasia syndrome (BOR; OMIM:113650) and autosomal dominant nonsyndromic sensorineural (late-onset) deafness (DFNA10; OMIM:601316).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C49H3.9 Aff_C49H3.9 P W All gene names: C49H3.9; 4I672; CE27873; WBGene00016794; WP:CE27873
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C50B6.3 Aff_C50B6.3 P W All gene names: C50B6.3; 5N795; CE08872; WBGene00008219; WP:CE08872
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C50C3.6 Aff_C50C3.6 P W All gene names: prp-8; C50C3.6; 3J261; CE00122; NM_066384; WBGene00004187; WP:CE00122 WormBase description: prp-8 is orthologous to the human gene SIMILAR TO U5 SNRNP-SPECIFIC PROTEIN (220 KD), ORTHOLOG OF S.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes                                                   

C50E10.4 Aff_C44C11.2, Aff_C50E10.4 P W All gene names: sop-2; C50E10.4; 2M633; CE32334; NM_064220; WBGene00004945; WP:CE32334
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C50F4.16 Aff_C50F4.11 P W All gene names: C50F4.16; C50F4.16.1; C50F4.16.2; 5K18; CE28213; WBGene00008238; WP:CE28213 WormBase description: The C50F4.16 gene encodes a NUDIX hydrolase.
C50F7.4 Aff_C50F7.4 P W All gene names: C50F7.4; 4I495; CE04242; SCB2; WBGene00016844; WP:CE04242 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: succinyl-CoA synthetase beta chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C52D10.6 Aff_C52D10.6 P W All gene names: skr-12; C52D10.6; 4S111; CE17590; NM_070644; WBGene00004818; WP:CE17590 WormBase description: skr-12 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-12 has no known function in vivo, since skr-12(RNAi) animals are at least superficially normal. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C52D10.8 Aff_C52D10.8 P W All gene names: skr-13; C52D10.8; 4S106; CE17592; NM_070641; WBGene00004819; WP:CE17592 WormBase description: The skr-13 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-13(RNAi) animals are at least superficially normal. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Lund et al 2002  Fig3D Oocyte-en,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              Romagnolo et al 2002  Fig3b Proteases, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C53D5.6 Aff_C53D5_1638.A P W All gene names: imb-3; C53D5.6; C53D5.A; 1A780; CE26971; NM_058314; WBGene00002077; WP:CE26971 WormBase description: imb-3 encodes an importin-beta-like protein orthologous to Drosophila, vertebrate, and yeast importin/karyopherin-beta3; IMB-3 is predicted to function as a nuclear transport factor that, with the RAN-1 GTPase, regulates nuclear import of ribosomal proteins; in C. elegans, IMB-3 is essential for embryogenesis and germline development, and may also be required for normal postembryonic growth rates. WormBase CDS description: importin beta, nuclear transport factor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes                                                   

C53D6.4 Aff_C53D6.4 P W All gene names: C53D6.4; 4J784; CE36284; WBGene00008281; WP:CE36284 WormBase description: angiotensin receptor like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C54G10.2 Aff_C54G10.2 P W All gene names: rfc-1; C54G10.2; 5P124; CE20613; NM_074218; WBGene00004337; WP:CE20613 WormBase description: replication factor C 140 KD subunit like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, list of genes in cluster F, Reinke et al 2004, wt                            
                                              vs glp-4 enriched genes, Reinke et al 2004, list of                                
                                              genes in cluster order, Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen                                                               

C54G4.8 Aff_C54G4.8 P W All gene names: cyc-1; C54G4.8; C54G4.8.1; C54G4.8.2; 1I600; CE05514; NM_059806; WBGene00000869; WP:CE05514 WormBase description: cyc-1 encodes a component of complex III ( cytochrome c reductase) required for normal ATP production; reduction of ATP production by cyc-1(RNAi) decreases growth rate and body size, slows behavior, and increases lifespan; cyc-1 encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial WormBase CDS description: cytochrome C1, heme protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

C54G7.4 Aff_C54G7.4 P W All gene names: C54G7.4; CE37621; WBGene00016935; WP:CE37621; XG166
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C54H2.3 Aff_C54H2.3 P W All gene names: tag-294; C54H2.3; CE06985; WBGene00016937; WP:CE06985; XG380
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

CD4.3 Aff_CD4.3 P W All gene names: CD4.3; CD4.3.1; CD4.3.2; 5G73; CE16951; WBGene00016989; WP:CE16951
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

CD4.4 Aff_CD4.4 P W All gene names: CD4.4; 5G71; CE16952; WBGene00016990; WP:CE16952
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

CD4.7 Aff_CD4.7 P W All gene names: CD4.7; 5G74; CE35262; WBGene00016992; WP:CE35262
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

D1007.7 Aff_D1007.7 P W All gene names: D1007.7; 1F166; CE26916; WBGene00017004; WP:CE26916 WormBase description: RNA-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order                                               

D1009.2 Aff_D1009.2 P W All gene names: cyn-8; cyp-8; D1009.2; CE04286; CE27892; NM_077105; WBGene00000884; WP:CE04286; WP:CE27892; XJ531 WormBase description: cyp-8 encodes a peptidyl-propyl cis-trans isomerase of the cyclophilin family; cyclophilins are implicated in protein folding, however the precise role of cyp-8 is not known; a CYP-8-fusion protein localises specifically to gut cell nuclei.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

D1043.1 Aff_D1043.1 P W All gene names: D1043.1; 2L877; CE32842; WBGene00008361; WP:CE32842
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

D1081.6 Aff_D1081.6 P W All gene names: D1081.6; 1J54; CE05538; WBGene00008384; WP:CE05538
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E                                                   

D2005.1 Aff_D2005.1 P W All gene names: D2005.1; 1I360; CE09065; WBGene00008397; WP:CE09065 WormBase description: RNA adenosine deaminase like
D2013.10 Aff_D2013.10 P W All gene names: tag-175; D2013.10; 2J613; CE17622; WBGene00006520; WBGene00008406; WP:CE17622
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

D2021.1 Aff_D2021.1 P W All gene names: D2021.1; CE01878; WBGene00017046; WP:CE01878; XJ181 WormBase description: glucose repression mediator protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

D2023.4 Aff_D2023.4 P W All gene names: D2023.4; D2023.4.1; D2023.4.2; 5M304; CE09074; WBGene00008408; WP:CE09074 WormBase description: D2023.4 encodes a thialysine N-(epsilon)-acetyltransferase, belonging to the GCN5-related N-acetyltransferase superfamily; recombinant D2023.4 protein forms a catalytically active homodimer, most efficiently catalysing the N-acetylation of thialysine [S-(2-aminoethyl)-L-cysteine], O-(2-aminoethyl)-L-serine and S-(2-aminoethyl)-D,L-homocysteine. WormBase CDS description: diamine acetyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Early genes,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

D2030.6 Aff_D2030.6 P W All gene names: D2030.6; D2030.6.1; D2030.6.2; 1I162; CE09083; WBGene00008416; WP:CE09083
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

D2030.8 Aff_D2030.8 P W All gene names: D2030.8; 1I169; CE28545; WBGene00008418; WP:CE28545
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

D2045.2 Aff_D2045.2 P W All gene names: D2045.2; 3L542; CE00639; WBGene00008422; WP:CE00639
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, oogenesis enriched genes, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated                                                      

D2045.6 Aff_D2045.6 P W All gene names: cul-1; lin-19; D2045.6; 3L563; CE29089; WBGene00000836; WP:CE29089 WormBase description: cul-1 encodes a cullin, orthologous to Cdc53/Cul1 in S. cerevisiae and CUL-1 in humans (OMIM:603134), that is required both maternally and zygotically for developmentally programmed transitions from the G1 phase of the cell cycle to the GO phase or the apoptotic pathway, and that is probably also required for normally slow G1-to-S phase progression; CUL-1 physically interacts with eight Skp1-related proteins (SKR-1, -2, -3, -4, -7, -8, -9, and -10). WormBase CDS description: Cuticlin family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Murphy et al 2003  Fig2 Class2 shorten                                    
                                              lifespan                                                                           

D2085.1 Aff_D2085.1 P W All gene names: pyr-1; D2085.1; 2I947; CE03105; NM_063437; WBGene00004259; WP:CE03105 WormBase description: pyr-1 is orthologous to the human gene CARBAMYL PHOSPHATE SYNTHETASE I (CPS1, which when mutated leads to hyperammonemia (OMIM:237300); PYR-1 protein is predicted to be mitochondrial with 68% accuracy. WormBase CDS description: glutamine-dependent carbamoyl-phosphate synthase, aspartate carbamoyltransferase, dihydroorotase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, list                             
                                              of genes in cluster C, Reinke et al 2004, GO                                       
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

D2089.5 Aff_D2089.5 P W All gene names: gbh-1; D2089.5; 2K982; CE00940; NM_063904; WBGene00001522; WP:CE00940 WormBase description: gbh-1 encodes a predicted ortholog of human hBBOX1; expressed in the intestine and in head and body muscles. WormBase CDS description: gamma-butyrobetaine,2-oxoglutarate dioxygenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Unkown,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

D2096.1 Aff_D2096.1 P W All gene names: D2096.1; 4J163; CE04299; WBGene00017069; WP:CE04299
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

D2096.2 Aff_D2096.2 P W All gene names: D2096.2; 4J145; CE29245; CE38496; WBGene00017070; WP:CE29245; WP:CE38496
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

D2096.8 Aff_D2096.8 P W All gene names: D2096.8; 4J144; CE04306; WBGene00017075; WP:CE04306
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, GO                               
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

DY3.7 Aff_DY3.7 P W All gene names: sup-17; DY3.7; 1J373; CE15751; NM_059976; WBGene00006324; WP:CE15751 WormBase description: sup-17 encodes an ADAM protein, an integral membrane disintegrin and zinc-activated metalloproteinase, orthologous to Drosophila and mouse KUZBANIAN and the vertebrate ADAM10 proteins; SUP-17 is required maternally for embryonic development and plays a role in LIN-12/Notch-mediated cell signaling required for several cell fate decisions during vulval development; SUP-17 is also required for normal body morphology and male tail development; SUP-17 functions cell autonomously to facilitate LIN-12 signaling and requires the LIN-12 extracellular domain to do so. WormBase CDS description: Zinc-binding metalloprotease domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E                                                                          

E01G4.5 Aff_E01G4.5 P W All gene names: E01G4.5; 2N763; CE23623; WBGene00008447; WP:CE23623
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, IVb                              
                                              male soma enriched genes, Reinke et al 2004, GO                                    
                                              categories, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

E02H1.1 Aff_E02H1.1 P W All gene names: E02H1.1; 2J880; CE30642; WBGene00008455; WP:CE30642 WormBase description: rRNA methyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

E02H1.2 Aff_E02H1.2 P W All gene names: E02H1.2; 2J878; CE01537; WBGene00008456; WP:CE01537 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: GTP binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated, Wang et al 2003  S5                              
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

E02H4.3 Aff_E02H4.3 P W All gene names: tag-172; E02H4.3; CE31462; CE31463; WBGene00006517; WBGene00008461; WP:CE31462; WP:CE31463 WormBase description: serine/threonine kinase (CLK subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

EEED8.12 Aff_EEED8.12 P W All gene names: EEED8.12; 2F700; CE01885; WBGene00017140; WP:CE01885 WormBase description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F01F1.1 Aff_F01F1.1 P W All gene names: F01F1.1; 3G971; CE26885; CE29249; CE32351; WBGene00017158; WP:CE26885; WP:CE29249; WP:CE32351
F01F1.2 Aff_F01F1.2 P W All gene names: F01F1.2; 3G969; CE26886; WBGene00017159; WP:CE26886
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F01F1.9 Aff_F01F1.9 P W All gene names: F01F1.9; 3G952; CE01235; WBGene00017163; WP:CE01235
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F01G10.1 Aff_F01G10.1 P W All gene names: F01G10.1; F01G10.1.1; F01G10.1.2; 4L9; CE09163; WBGene00008506; WP:CE09163 WormBase description: The F01G10.1 gene encodes an ortholog of the human gene TRANSKETOLASE (TKT; OMIM:606781), which when mutated leads to Wernicke-Korsakoff syndrome (OMIM:277730). WormBase CDS description: transketolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F01G4.1 Aff_F01G4.1 P W All gene names: psa-4; F01G4.1; F01G4.1.1; F01G4.1.2; 4L895; CE05553; NM_069681; WBGene00004204; WP:CE05553 WormBase description: The psa-4 (phasmid socket absent) gene encodes an ortholog of SWI2/SNF2, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; psa-4 is probably required during mitosis of the T cells for asymmetric cell division. WormBase CDS description: SNF2alpha like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

F02E9.1 Aff_F02E9.1 P W All gene names: F02E9.1; 1I981; CE09183; WBGene00008528; WP:CE09183
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F02H6.2 Aff_F02H6.2 P W All gene names: F02H6.2; 4O961; CE17626; WBGene00008535; WP:CE17626
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

F07A11.3 Aff_F07A11.3 P W All gene names: npp-5; F07A11.3; 2L888; CE03145; NM_064080; WBGene00003791; WP:CE03145
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F07E5.5 Aff_F07E5.5 P W All gene names: F07E5.5; 2C344; CE27916; WBGene00017210; WP:CE27916 WormBase description: zinc-finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

F08D12.10 Aff_F08D12.10 P W All gene names: fbxb-110; sdz-9; F08D12.10; 2D62; CE09243; WBGene00017253; WP:CE09243 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

F08H9.3 Aff_F08H9.3 P W All gene names: F08H9.3; 5O942; CE09267; WBGene00008591; WP:CE09267 WormBase description: F08H9.3 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the larval pharynx and the anterior adult pharynx), and its expression is not strongly induced by heat shock; however, F08H9.3 expression is increased by heat shock (with adult expression in the full pharynx) and probably aids heat shock resistance, since F08H9.3(RNAi) animals have sensitivity to heat shock that is sporadically higher than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, Lund et al 2002 Aging time                                
                                              course Fig2C heatshock, Lund et al 2002  Fig4 Mount 15,                            
                                              Romagnolo et al 2002  Fig2a heat shock                                             

F09B12.2 Aff_F09B12.2 P W All gene names: F09B12.2; CE17644; WBGene00008606; WP:CE17644; XP718
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F09F7.6 Aff_F09F7.6 P W All gene names: F09F7.6; 3G640; CE01238; WBGene00017303; WP:CE01238
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F09F7.7 Aff_F09F7.7 P W All gene names: F09F7.7; 3G644; CE30655; CE30656; WBGene00017304; WP:CE30655; WP:CE30656
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, Reinke et al 2004, wt herm vs wt                                
                                              male enriched gen, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F09G2.9 Aff_F09G2.9 P W All gene names: F09G2.9; F09G2.9.1; F09G2.9.2; 5H674; CE09304; WBGene00017317; WP:CE09304
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

F10B5.1 Aff_F10B5.1 P W All gene names: rpl-10; F10B5.1; F10B5.1.1; F10B5.1.2; 2I435; CE01543; NM_063306; WBGene00004421; WP:CE01543 WormBase description: rpl-10 encodes a large ribosomal subunit L10 protein required in mass RNAi assays for embryonic viability, fertility, normally rapid growth, and normal body coloration; the rpl-10 transcription unit has a nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that rpl-10 is a natural substrate for SMG-mediated nonsense suppresssion; several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-7, rpl-12) have protein products that are involved in translation. WormBase CDS description: ribosomal protein L10 (QM protein)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F10C2.4 Aff_F10C2.4 P W All gene names: F10C2.4; 5M525; CE09308; WBGene00008645; WP:CE09308 WormBase description: F10C2.4 encodes a homolog of the DNA polymerase delta complex subunit A that is required in embryos for the normal timing of embryonic cell divisions (much as DIV-1 is) and, also, for normal chromosome segregation (probably because of defective DNA replication). WormBase CDS description: DNA polymerase family B
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, GO categories,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F10C5.1 Aff_Y55B1B_114.A P W All gene names: apc-8; mat-3; pod-4; vex-2; F10C5.1; F10C5.1.1; F10C5.1.2; 3B99; CE26888; NM_064802; WBGene00003134; WBGene00006909; WP:CE26888
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, Fig2b shared gemlines, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, intrinsic, Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, wt herm vs wt male                              
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F10G2.4 Aff_F10G2.4 P W All gene names: F10G2.4; 5H805; CE09332; WBGene00017365; WP:CE09332
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

F10G7.1 Aff_F10G7.1 P W All gene names: tag-151; F10G7.1; F10G7.1.1; F10G7.1.2; 2F3; CE02624; WBGene00006497; WP:CE02624
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F10G7.4 Aff_F10G7.4 P W All gene names: rad-21.1; coh-2; scc-1; F10G7.4; 2E989; CE02628; NM_062435; WBGene00004737; WP:CE02628 WormBase description: scc-1 encodes a member of the Rad21/Rec8-like family of cohesion proteins that affects embryonic viability, fertility, the rate of embryonic cell divisions and the incidence of male progeny; interacts with ATL-1, F56D12.5, and F11E6.1 based on yeast two-hybrid assays, and is expressed in nondividing embryonic and germline nuclei. WormBase CDS description: DNA double-strand break repair
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                 
                                              daf-16 Resveratrol                                                                 

F10G8.3 Aff_F10G8.3 P W All gene names: npp-17; F10G8.3; F10G8.3.1; F10G8.3.2; 1K605; CE09338; CeRAE1; NM_060249; WBGene00003803; WP:CE09338 WormBase description: polyA RNA export protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F10G8.6 Aff_F10G8.6 P W All gene names: F10G8.6; 1K623; CE30749; WBGene00008664; WP:CE30749 WormBase description: F10G8.6 encodes an homolog of S. cerevisiae CFD1 (also known as YIL003W/DRE3), a putative P-loop ATPase conserved in eukaryotes and required in yeast for 4Fe-4S cluster assembly; F10G8.6 is also homologous to yeast NBP35/YGL091C; in C. elegans, F10G8.6 is required for normally rapid growth and maintenance of the germline; F10G8.6 protein was predicted to be mitochondrial on the basis of its phylogenetic profile. WormBase CDS description: nucleotide binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F10G8.9 Aff_F10G8.9 P W All gene names: F10G8.9; 1K625; CE09344; CE30752; WBGene00008667; WP:CE09344; WP:CE30752 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

F11A5.9 Aff_F11A5.9 P W All gene names: F11A5.9; F11A5.9.1; F11A5.9.2; 5Q697; CE15787; WBGene00008677; WP:CE15787 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F11C1.5 Aff_F11C1.5 P W All gene names: F11C1.5; CE20666; CE20667; WBGene00008694; WP:CE20666; WP:CE20667; XN617 WormBase description: nir like gene involved in denitrification
F11E6.7 Aff_F11E6.7 P W All gene names: F11E6.7; 4S402; CE19787; WBGene00008710; WP:CE19787
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, Fig2b shared gemlines, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt males vs                            
                                              glp4 male enriched , Reinke et al 2004, wt herm vs wt                              
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F11G11.5 Aff_F11G11.5 P W All gene names: F11G11.5; CE07058; NM_062473; WBGene00017385; WP:CE07058
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F12F6.5 Aff_F12F6.5 P W All gene names: tag-13; F12F6.5; 4M341; CE20680; WBGene00006406; WP:CE20680 WormBase description: chimaerin like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E                                                   

F13E9.6 Aff_F13E9.6 P W All gene names: sdz-13; F13E9.6; 4L642; CE05608; WBGene00008755; WP:CE05608
F13G3.6 Aff_F13G3.6 P W All gene names: F13G3.6; 1H880; CE05618; WBGene00008766; WP:CE05618 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: B.subtilis teichoic acids biosynthesis protein GGAB like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F13H10.3 Aff_F13H10.3 P W All gene names: F13H10.3; 4L778; CE27959; CE30342; WBGene00008774; WP:CE27959; WP:CE30342 WormBase description: Yeast YEH4 like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F14B6.1 Aff_F14B6.1 P W All gene names: sdz-14; F14B6.1; 1M808; CE17663; WBGene00008782; WP:CE17663
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F14E5.2 Aff_F14E5.2 P W All gene names: F14E5.2; 2I714; CE03205; CE36926; WBGene00008800; WP:CE03205; WP:CE36926 WormBase description: cysteine-rich fibroblast growth factor receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F14F4.3 Aff_F14F4.3 P W All gene names: mrp-5; F14F4.3; CE23649; CE23650; NM_078077; NM_078078; WBGene00003411; WP:CE23649; WP:CE23650; XP558 WormBase description: The mrp-5 gene encodes a homolog of the human gene CFTR, which when mutated leads to cystic fibrosis (OMIM:219700).
F14H8.1 Aff_F14H8.1 P W All gene names: obr-2; F14H8.1; 5P492; CE35859; NM_074294; WBGene00008832; WP:CE35859 WormBase description: oxysterol-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, fem3 enriched genes                                             

F15B10.3 Aff_F15B10.3 P W All gene names: F15B10.3; 4H369; CE16989; WBGene00017481; WP:CE16989
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F15B9.4 Aff_F15B9.4 P W All gene names: F15B9.4; 5N485; CE37351; WBGene00008848; WP:CE37351
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F16A11.1 Aff_F16A11.1 P W All gene names: F16A11.1; 1J970; CE17679; WBGene00008876; WP:CE17679 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F16D3.2 Aff_F16D3.2 P W All gene names: rsd-6; F16D3.2; F16D3.2.1; F16D3.2.2; F16D3.2.3; 1I936; CE32384; NM_059868; WBGene00004684; WP:CE32384
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

F17A2.13 Aff_F17A2.13 P W All gene names: F17A2.13; CE33999; WBGene00008904; WP:CE33999; XM941
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F17A2.5 Aff_F17A2.5 P W All gene names: ceh-40; F17A2.5; CE03215; NM_077659; WBGene00000461; WP:CE03215; XM934 WormBase description: a homeodomain protein homologous to Extradenticle (Exd) from Drosophila, genetically interacts with ceh-20. WormBase CDS description: Homeobox domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen                                                                       

F17A9.4 Aff_F17A9.4 P W All gene names: F17A9.4; 5G590; CE09448; WBGene00017536; WP:CE09448
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S4 TransientList, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F18A1.4 Aff_F18A1.4 P W All gene names: lir-2; F18A1.4; 2H961; CE27975; CE27976; WBGene00003045; WP:CE27975; WP:CE27976 WormBase description: contains C2H2-type zinc finger
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F18E2.3 Aff_F18E2.3 P W All gene names: scc-3; F18E2.3; 5N247; CE05664; NM_073792; WBGene00004738; WP:CE05664 WormBase description: scc-3 encodes a cohesin complex subunit homologous to Saccharomyces cerevisiae Irr1p/Scc3p; SCC-3 is required during meiosis for synaptonemal complex formation and sister chromatid cohesion, proper localization of REC-8 to chromosomes, mitotic chromosome segregation, embryonic development, and vulval morphogenesis; in embryos, SCC-3 forms a cohesin complex with SCC-1, SMC-1, SMC-3, and TIM-1, a HEAT/Armadillo repeat-containing protein related to Drosophila TIMELESS; in the germline, SCC-3 associates with chromatin of transistion zone nuclei, assembles along the longitudinal axes of synapsed chromosomes at pachytene, and unlike other cohesins, localizes throughout chromatin at diakinesis; SCC-3 localization requires TIM-1, and SCC-3 and REC-8 are mutually required for chromatin localization.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F19B10.9 Aff_F19B10.9 P W All gene names: sea-1; tbx-18; F19B10.9; CE09476; WBGene00004750; WP:CE09476
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Jones et al 2001  Non dauer                             
                                              genes P<0.05, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, Romagnolo et al 2002  Fig3b TF, ViswanathanM et al                              
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F19B6.1 Aff_F19B6.1 P W All gene names: F19B6.1; CE05666; CE20700; NM_069949; NM_069950; WBGene00008948; WP:CE05666; WP:CE20700 WormBase description: uridine kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S7 SAGE genes in the                                   
                                              dataset, Wang et al 2003  S4 Early genes, Wang et al                               
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F19F10.1 Aff_F19F10.1 P W All gene names: F19F10.1; 5I41; CE09481; WBGene00017598; WP:CE09481 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Reinke et al 2004, wt herm vs wt herm enriched gen,                            
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              IVb male soma enriched genes, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

F19F10.10 Aff_F19F10.10 P W All gene names: F19F10.10; 5I58; CE09490; WBGene00017606; WP:CE09490
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F20B6.8 Aff_F20B6.8 P W All gene names: hpk-1; F20B6.8; F20B6.8c.1; F20B6.8c.2; F20B6.8c.3; F20B6.8c.4; F20B6.8c.5; CE04430; CE30961; CE30962; NM_171662; NM_171663; NM_171664; WBGene00001994; WP:CE04430; WP:CE30961; WP:CE30962; XE830 WormBase description: hpk-1 encodes a predicted dual-specificity protein kinase with distant homology to the vertebrate protein kinase DYRK1A and the Drosophila homolog mini-brain; increased expression of DYRK1A is implicated in the neuropathology of trisomy 21/Down syndrome; RNA interference of hpk-1 does not result in any detectable phenotype; the HPK-1::GFP fusion protein is localized to the nucleus and is expressed in cleavage stage embryos.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

F20G2.2 Aff_F20G2.2 P W All gene names: F20G2.2; 5O234; CE09505; WBGene00008986; WP:CE09505 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F20H11.1 Aff_F20H11.1 P W All gene names: F20H11.1; 3H680; CE29769; WBGene00017646; WP:CE29769
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

F21D5.2 Aff_F21D5.2 P W All gene names: F21D5.2; F21D5.2.1; F21D5.2.2; 4J493; CE03245; WBGene00009007; WP:CE03245 WormBase description: Yeast YHB3-like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F21D5.8 Aff_F21D5.8 P W All gene names: F21D5.8; 4J504; CE03250; WBGene00009013; WP:CE03250
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F21F3.6 Aff_F21F3.6 P W All gene names: F21F3.6; F21F3.6.1; F21F3.6.2; 1F480; CE09536; WBGene00017675; WP:CE09536
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F22D3.2 Aff_F22D3.2 P W All gene names: F22D3.2; 2H237; CE27138; CE37006; CE37762; WBGene00017699; WP:CE27138; WP:CE37006; WP:CE37762
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F22F4.2 Aff_F22F4.2 P W All gene names: inx-3; opu-3; F22F4.2; F22F4.2.1; F22F4.2.2; CE33055; NM_076601; WBGene00002125; WP:CE33055; XG615 WormBase description: unc-7-like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

F22G12.3 Aff_F22G12.3 P W All gene names: F22G12.3; 1N737; CE15890; WBGene00009063; WP:CE15890 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F22G12.5 Aff_F22G12.5 P W All gene names: F22G12.5; 1N773; CE15892; WBGene00009065; WP:CE15892
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F23B12.8 Aff_F23B12.8 P W All gene names: bmk-1; klp-14; F23B12.8; F23B12.8.1; F23B12.8.2; 5O934; CE09600; NM_074181; WBGene00000257; WP:CE09600 WormBase description: a homolog of BimC kinesin; affects embryogenesis, spindle and chromosome positioning during early embryogenesis, and genetically interacts with air-2. WormBase CDS description: kinesin-like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, Fig2b shared gemlines, Reinke et al 2004, wt vs                              
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

F23D12.4 Aff_F23D12.4 P W All gene names: F23D12.4; CE05702; WBGene00009088; WP:CE05702; XP63 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F23F12.4 Aff_F23F12.4 P W All gene names: sdz-15; F23F12.4; 3H587; CE01251; WBGene00017752; WP:CE01251 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F25B3.6 Aff_F25B3.6 P W All gene names: F25B3.6; 5K60; CE09619; WBGene00009103; WP:CE09619
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F25B4.2 Aff_F25B4.2 P W All gene names: F25B4.2; 5G191; CE30760; PELLINO; WBGene00017766; WP:CE30760
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F25B5.2 Aff_F25B5.2 P W All gene names: F25B5.2; F25B5.2.1; F25B5.2.2; 3H51; CE01919; WBGene00017774; WP:CE01919
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F25E5.1 Aff_F25E5.1 P W All gene names: F25E5.1; 5H951; CE07135; WBGene00017782; WP:CE07135
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F25F2.2 Aff_F25F2.2 P W All gene names: cdh-4; F25F2.2; 3F625; CE00961; NM_065516; WBGene00000396; WP:CE00961 WormBase description: A homolog of a member of the cadherin superfamily that is involved in cell-cell adhesion. WormBase CDS description: Approximately 25 cadherin-repeats, 3 EGF domains and one Laminin G domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              daf-16 Resveratrol                                                                 

F25G6.8 Aff_F25G6.8 P W All gene names: F25G6.8; F25G6.8.1; F25G6.8.2; 5J44; CE09644; WBGene00017799; WP:CE09644
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F25H2.2 Aff_F25H2.2 P W All gene names: F25H2.2; 1L121; CE09647; WBGene00009116; WP:CE09647 WormBase description: Phosphatase/kinase domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F25H2.8 Aff_F25H2.8 P W All gene names: ubc-25; F25H2.8; F25H2.8.1; F25H2.8.2; 1L139; CE34543; NM_060363; WBGene00006720; WP:CE34543
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F26A1.2 Aff_F26A1.2 P W All gene names: fkh-5; F26A1.2; 3F935; CE02683; NM_065602; WBGene00001437; WP:CE02683 WormBase description: fkh-5 encodes a member of the forkhead domain transcription factor family.
F26A3.2 Aff_F26A3.2 P W All gene names: F26A3.2; 1I218; CE09667; WBGene00009141; WP:CE09667 WormBase description: Cap binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, GO                              
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

F26D10.3 Aff_F26D10.3 P W All gene names: hsp-1; F26D10.3; F26D10.3.1; F26D10.3.2; F26D10.3.3; T28F3.2; 4S223; CE09682; NM_070667; WBGene00002005; WP:CE09682 WormBase description: hsp-1 encodes hsp70A, a member of the heat shock family of proteins; hsp70A is closely related to the Drosophila heat inducible hsp70s and the S. cerevisiae SSA hsp70 subfamily; the hsp-1 gene is normally expressed throughout development and upon heat-shock the hsp-1 mRNA is enhanced 2-6 fold; down-regulation of hsp-1 via RNA interference results in a small reduction in the life-span of an age-1 mutant indicating that hsp-1 may play some role in regulating longevity. WormBase CDS description: HSP-1 heat shock 70kd protein A
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              Lund et al 2002 Aging time course Fig2C heatshock,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Romagnolo et al 2002  Fig2a heat                             
                                              shock, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F26E4.1 Aff_F26E4.1 P W All gene names: sur-6; F26E4.1; 1K333; CE09685; NM_060190; WBGene00006352; WP:CE09685 WormBase description: protein phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, wt                               
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

F26E4.8 Aff_F26E4.8 P W All gene names: tba-1; F26E4.8; F26E4.8.1; F26E4.8.2; 1K362; CE09692; NM_060199; TUBA3; WBGene00006528; WP:CE09692 WormBase description: TBA-2 tubulin alpha-2 chain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, IVb male soma enriched genes                                              

F27D9.5 Aff_F27D9.5 P W All gene names: F27D9.5; CE04451; WBGene00017864; WP:CE04451; XI276 WormBase description: The F27D9.5 gene encodes an ortholog of the human gene PROPIONYL-COA CARBOXYLASE ALPHA SUBUNIT (PCCA), which when mutated leads to propionicaciduria, type I (OMIM:232000). WormBase CDS description: Propionyl-coA carboxylase alpha chain precursor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F28B3.7 Aff_F28B3.7 P W All gene names: him-1; smc-1; F28B3.7; F28B3.7a.1; F28B3.7a.2; 1F522; CE29497; CE39925; NM_059085; WBGene00001860; WP:CE29497; WP:CE39925 WormBase description: him-1 encodes a homolog of the conserved eukaryotic protein, SMC1, a member of the SMC (structural maintenance of chromosomes) superfamily that is required for embryonic viability, germline mitosis, chromosome pairing, and the segregation of mitotic chromosomes; HIM-1 can interact with SMC-3 and is required for DPY-28 localization to meiotic chromosomes; associates with the chromatin of transition-zone nuclei.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F28C6.1 Aff_F28C6.1 P W All gene names: F28C6.1; 2I881; CE03272; WBGene00009202; WP:CE03272 WormBase description: transcription factor AP-2 like
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F28D1.2 Aff_F28D1.2 P W All gene names: F28D1.2; 4N140; CE05742; WBGene00009212; WP:CE05742
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F28H1.1 Aff_F28H1.1 P W All gene names: F28H1.1; 1E565; CE09766; WBGene00017908; WP:CE09766
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F28H1.3 Aff_F28H1.3 P W All gene names: ars-2; F28H1.3; F28H1.3.1; F28H1.3.2; F28H1.3.3; 1E553; CE09768; NM_058880; WBGene00000197; WP:CE09768 WormBase description: ars-2 encodes a predicted cytoplasmic alanyl-tRNA synthetase (AlaRS), a class II aminoacyl-tRNA synthetase that catalyzes the attachment of alanine to its cognate tRNA and is thus required for protein biosynthesis; ARS-2 is essential for embryogenesis, and is required for fertility and a normal rate of postembryonic development; ARS-2 expression is likely ubiquitous and detected in hypodermis, intestine, neurons, and the pharynx from late embryogenesis through the adult stage of development. WormBase CDS description: aminoacyl-tRNA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F28H6.4 Aff_F28H6.4 P W All gene names: F28H6.4; CE23688; WBGene00009233; WP:CE23688; XO751
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F29B9.6 Aff_F29B9.6 P W All gene names: ubc-9; F29B9.6; F29B9.6.1; F29B9.6.2; 4F417; CE09784; WBGene00006706; WP:CE09784 WormBase description: ubc-9 encodes an E2 ubiquitin-conjugating enzyme orthologous to Saccharomyces cerevisiae Ubc9p, which mediates the covalent attachment of the small ubiquitin-related modifier (SUMO) to various substrates including Ran-GAP1 and p53; UBC-9 activity is required for several developmental processes including embryogenesis, larval development, vulval development, posterior morphogenesis, and the DNA damage response (both DNA repair and DNA damage checkpoint function); UBC-9 interacts with LIN-1, an ETS-domain-containing transcription factor that negatively regulates vulval development, and with RAD-51, the C. elegans RecA homolog that is required for DNA repair; the expression pattern and subcellular localization of UBC-9 are not yet known. WormBase CDS description: ubiquitin-conjugating enzyme
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

F29C12.3 Aff_F29C12.2 P W All gene names: F29C12.3; CE39247; WBGene00009245; WP:CE39247
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated                                                   

F29G9.1 Aff_F29G9.1 P W All gene names: F29G9.1; 5G519; CE35297; WBGene00017930; WP:CE35297
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              F, Reinke et al 2004, fem1 enriched genes, Reinke et al                            
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen                                                               

F31C3.2 Aff_F31C3.2 P W All gene names: F31C3.2; 1P631; CE17731; CE36143; WBGene00009284; WP:CE17731; WP:CE36143
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, GO                              
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

F31C3.4 Aff_F31C3.4 P W All gene names: F31C3.4; 1P644; CE17733; WBGene00009286; WP:CE17733
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F31D4.3 Aff_F31D4.3 P W All gene names: fkb-6; F31D4.3; F31D4.3.1; F31D4.3.2; 5V317; CE15929; NM_075625; WBGene00001431; WP:CE15929 WormBase description: FKBP-type peptidyl-prolyl cis-trans isomerases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F31E3.4 Aff_F31E3.4 P W All gene names: F31E3.4; 3I54; CE01269; WBGene00017951; WP:CE01269
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, GO categories,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F31E8.4 Aff_F31E8.4 P W All gene names: F31E8.4; 2H90; CE07167; WBGene00017954; WP:CE07167
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F31E9.4 Aff_F31E9.4 P W All gene names: sdz-16; F31E9.4; 5R806; CE15938; WBGene00009297; WP:CE15938 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F32A11.1 Aff_F32A11.1 P W All gene names: F32A11.1; 2N449; CE17737; WBGene00009307; WP:CE17737
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F32D8.6 Aff_F32D8.6 P W All gene names: emo-1; oar-1; F32D8.6; F32D8.6.1; F32D8.6.2; 5L376; CE05785; NM_073377; WBGene00001303; WP:CE05785 WormBase description: emo-1 encodes an ortholog of S. cerevisiae Sec61p gamma subunit, which is required for translocation of secreted and membrane proteins into the endoplasmic reticulum; EMO-1 is required for oogenesis and ovulation. WormBase CDS description: protein transport protein SEC61 gamma subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F32E10.5 Aff_F32E10.5 P W All gene names: F32E10.5; 4I340; CE04478; WBGene00017992; WP:CE04478
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F32H2.2 Aff_F32H2.2 P W All gene names: mdt-31; F32H2.2; 1J543; CE09877; NM_060012; WBGene00007026; WP:CE09877 WormBase description: Yeast SOH1 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, list                            
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

F32H2.4 Aff_F32H2.4 P W All gene names: F32H2.4; 1J547; CE28927; WBGene00009341; WP:CE28927 WormBase description: WD domain, G-beta repeat (3 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F33D11.10 Aff_F33D11.10 P W All gene names: F33D11.10; F33D11.10.1; F33D11.10.2; 1G444; CE09901; WBGene00018007; WP:CE09901 WormBase description: intiation factor/helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F33D11.11 Aff_F33D11.11 P W All gene names: F33D11.11; 1G446; CE09902; WBGene00018008; WP:CE09902
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F33H1.1 Aff_F33H1.1 P W All gene names: daf-19; daf-24; F33H1.1; 2K448; CE17763; CE28019; WBGene00000914; WP:CE17763; WP:CE28019 WormBase description: DNA binding transcription factor
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McCarroll et al 2004  SFig5 conserved w/ yeast,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph                                 

F33H1.3 Aff_F33H1.3 P W All gene names: F33H1.3; 2K463; CE01569; WBGene00009364; WP:CE01569
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, intrinsic,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F33H2.3 Aff_F33H2.3 P W All gene names: F33H2.3; F33H2.3.1; F33H2.3.2; 1P627; CE17766; WBGene00009367; WP:CE17766 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F33H2.5 Aff_F33H2.5 P W All gene names: F33H2.5; 1P598; CE17767; WBGene00009368; WP:CE17767 WormBase description: DNA polymerase family B (3 domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004,                                
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              mixed oogenesis soma, Reinke et al 2004, GO categories                             

F33H2.7 Aff_F33H2.7 P W All gene names: F33H2.7; 1P620; CE34302; WBGene00009370; WP:CE34302
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F35D11.4 Aff_F35D11.4 P W All gene names: F35D11.4; 2E893; CE32648; WBGene00018045; WP:CE32648
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S4 Climbing, Wang et al 2003  S7 SAGE genes in                               
                                              the dataset, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

F35D11.5 Aff_F35D11.5 P W All gene names: F35D11.5; F35D11.5.1; F35D11.5.2; 2E892; CE29789; WBGene00018046; WP:CE29789
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F35D6.1 Aff_F35D6.1 P W All gene names: fem-1; isx-1; F35D6.1; 4G298; CE07175; CE28299; NM_068423; NM_068424; WBGene00001411; WP:CE07175; WP:CE28299 WormBase description: The fem-1 gene encodes an ankyrin repeat-containing protein orthologous to human FEM1A and is required for masculinization of germline and somatic tissues; FEM-1 is widely expressed and functions as a second messenger in the sex determination pathway, connecting the membrane protein TRA-2A to the transcription factor TRA-1A which it negatively regulates; FEM-1 may also play a role in apoptosis, as it is a substrate for the CED-3 protease and can induce apoptosis when overexpressed in mammalian cells.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F35G12.2 Aff_F35G12.2 P W All gene names: F35G12.2; F35G12.2.1; F35G12.2.2; F35G12.2.3; F35G12.2.4; 3F659; CE31500; WBGene00009440; WP:CE31500 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: isocitrate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, Romagnolo et al 2002  Fig3b Oxidation,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F36A2.1 Aff_F36A2.1 P W All gene names: F36A2.1; F36A2.1a.1; F36A2.1a.2; 1J382; CE39364; CE39365; WBGene00009451; WP:CE39364; WP:CE39365
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

F36A2.13 Aff_F36A2.13 P W All gene names: F36A2.13; 1J404; CE24948; WBGene00009460; WP:CE24948
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              GO categories                                                                      

F36A2.9 Aff_F36A2.9 P W All gene names: F36A2.9; 1J397; CE32407; CE32408; WBGene00009456; WP:CE32407; WP:CE32408 WormBase description: phospholipase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F36D3.1 Aff_F36D3.1 P W All gene names: F36D3.1; F36D3.1.1; F36D3.1.2; 5Q981; CE25872; WBGene00009469; WP:CE25872
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F36D4.5 Aff_F36D4.5 P W All gene names: F36D4.5; F36D4.5b.1; F36D4.5b.2; F36D4.5b.3; F36D4.5b.4; 5J900; CE28391; CE30778; WBGene00018090; WP:CE28391; WP:CE30778
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F36H1.1 Aff_F36H1.1 P W All gene names: fkb-1; F36H1.1; 4L801; CE05813; NM_069655; WBGene00001426; WP:CE05813 WormBase description: fkb-1 encodes a homolog of mouse FK506-binding protein 2. WormBase CDS description: FK506-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b others,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F38A5.7 Aff_F38A5.7 P W All gene names: F38A5.7; 4H367; CE10038; WBGene00018164; WP:CE10038
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F38C2.7 Aff_F38C2.7 P W All gene names: F38C2.7; 4R32; CE16006; WBGene00009539; WP:CE16006 WormBase description: Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F39B1.1 Aff_F39B1.1 P W All gene names: F39B1.1; CE05832; WBGene00009552; WP:CE05832; XP854 WormBase description: phosphatidylinositol 3-kinase like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

F39B2.1 Aff_F39B2.1 P W All gene names: F39B2.1; 1P385; CE16007; WBGene00009553; WP:CE16007 WormBase description: Zinc finger, C2H2 type (7 domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, GO                                     
                                              categories                                                                         

F39B2.10 Aff_F39B2.10 P W All gene names: dnj-12; F39B2.10; F39B2.10.1; F39B2.10.2; F39B2.10.3; F39B2.10.4; 1P351; CE16015; NM_061169; WBGene00001030; WP:CE16015 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain. WormBase CDS description: DnaJ, prokaryotic heat shock protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002 Aging time course                                 
                                              Fig2C heatshock, McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig2a heat shock,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F39B2.2 Aff_F39B2.2 P W All gene names: mms-2; uev-1; F39B2.2; F39B2.2.1; F39B2.2.2; 1P383; CE16008; NM_061177; WBGene00006730; WP:CE16008 WormBase description: uev-1 encodes a ubiquitin-conjugating enzyme (UBC or E2) variant that contains the characteristic UBC motif, but lacks the critical active-site cysteine residue necessary for catalytic activity; as loss of UEV-1 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of UEV-1 in C. elegans development and/or behavior is not yet known; UEV-1 does, however, interact with a number of proteins, such as UBC-13, that are likely involved in the response to DNA damage; thus, UEV-1 may play a role in ubiquitination and protein turnover in conjunction with DNA repair or the DNA damage checkpoint pathway.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F39B2.5 Aff_F39B2.5 P W All gene names: F39B2.5; F39B2.5.1; F39B2.5.2; 1P354; CE34485; WBGene00009556; WP:CE34485 WormBase description: Src homology domain 2
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Romagnolo et al                            
                                              2002  Fig3b signaling                                                              

F39H11.2 Aff_F39H11.2 P W All gene names: tlf-1; F39H11.2; 1J274; CE27159; NM_059955; WBGene00006577; WP:CE27159 WormBase description: The tlf-1 gene encodes a TATA binding protein (TBP)-like factor (TLF-1); TLF-1 is a functional transcriptional factor, and is required in vivo for zygotic embryonic RNA polymerase II transcription. WormBase CDS description: transcription factor TFIID like
F39H2.2 Aff_F39H2.2 P W All gene names: cyn-14; cyp-14; sig-7; F39H2.2; F39H2.2b.1; F39H2.2b.2; 1J227; CE32410; CE32411; NM_059942; NM_182005; WBGene00000890; WP:CE32410; WP:CE32411 WormBase description: cyp-14 encodes a predicted cyclophilin. WormBase CDS description: peptidylprolyl isomerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F40F4.3 Aff_F40F4.3 P W All gene names: lbp-1; F40F4.3; CE04533; NM_076156; WBGene00002253; WP:CE04533; XD879 WormBase description: fatty acid-binding protein
                                              
Member of lists (Publications lists):
                                              McElwee et al 2003  T1 targets of                                 
                                              daf-16, Reinke et al 2004, list of genes in cluster                                
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F40F4.7 Aff_F40F4.7 P W All gene names: F40F4.7; CE28316; WBGene00018238; WP:CE28316; XD864
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

F40G9.12 Aff_F40G9.12 P W All gene names: F40G9.12; 3A789; CE19859; WBGene00018247; WP:CE19859
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40G9.2 Aff_F40G9.2 P W All gene names: F40G9.2; 3A809; CE19849; WBGene00018240; WP:CE19849
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F40G9.3 Aff_F40G9.3 P W All gene names: ubc-20; F40G9.3; 3A807; CE19850; NM_064773; WBGene00006715; WP:CE19850 WormBase description: ubiquitin conjugating enzyme
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F40G9.9 Aff_F40G9.9 P W All gene names: F40G9.9; 3A784; CE32413; WBGene00018245; WP:CE32413 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F42A10.1 Aff_F42A10.1 P W All gene names: F42A10.1; F42A10.1.1; F42A10.1.2; F42A10.1.3; 3H265; CE01292; WBGene00018339; WP:CE01292
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F42G9.1 Aff_F42G9.1 P W All gene names: F42G9.1; 3B403; CE07231; CE30788; WBGene00018362; WP:CE07231; WP:CE30788 WormBase description: Protein phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, herm sperm,                               
                                              Reinke et al 2004, spermatogenesis enriched genes,                                 
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F43E2.4 Aff_F43E2.4 P W All gene names: haf-2; F43E2.4; 2H644; CE07240; NM_063136; WBGene00001812; WP:CE07240 WormBase description: haf-2 encodes a predicted transmembrane protein of the ATP-binding cassette (ABC) transporter superfamily; by homology, HAF-2 is proposed to function in ATP-dependent transport of molecules across plasma and intracellular membranes; however, as loss of HAF-2 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of HAF-2 in C. elegans development and/or behavior is not yet known. WormBase CDS description: membrane transport protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F43E2.7 Aff_F43E2.7 P W All gene names: F43E2.7; 2H664; CE32664; CE33087; WBGene00018395; WP:CE32664; WP:CE33087
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F43G6.5 Aff_F43G6.5 P W All gene names: F43G6.5; 2M106; CE23726; WBGene00009658; WP:CE23726 WormBase description: poly (A) polymerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F43G9.12 Aff_F43G9.12 P W All gene names: F43G9.12; 1J219; CE17822; WBGene00009672; WP:CE17822 WormBase description: Human GC-rich sequence DNA-binding factor (GCF) like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, list of genes in cluster F, Reinke et al 2004, wt                            
                                              vs glp-4 enriched genes, Reinke et al 2004, list of                                
                                              genes in cluster order, Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen                                                               

F44A6.2 Aff_F44A6.2 P W All gene names: nhr-24; sex-1; F44A6.2; F44A6.2.1; F44A6.2.2; CE03323; NM_077312; WBGene00004786; WP:CE03323; XK820; cnr14 WormBase description: sex-1 encodes a DNA-binding protein that is a member of the nuclear hormone receptor superfamily of transcriptional regulators; during embryonic development, SEX-1 functions as an X chromosome signal element that transmits the primary sex-determination signal by negatively regulating transcription of xol-1, a gene whose expression levels correlate with hermaphrodite or male development (low xol-1 levels result in hermaphrodite development, high xol-1, in that of males); in vivo, SEX-1 can associate with extrachromosomal arrays containing the xol-1 promoter, indicating that SEX-1's affect on xol-1 transcription is likely to be direct; SEX-1 localizes to nuclei from oogenesis through mid-embryogenesis, with highest levels of expression visible during early gastrulation (28-100-cell-stage); the SEX-1 expression pattern appears to be similar in hermaphrodites and males. WormBase CDS description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F44E2.2 Aff_F44E2.2 P W All gene names: F44E2.2; 3J949; CE00180; CE07254; CE29321; WBGene00018416; WP:CE00180; WP:CE07254; WP:CE29321 WormBase description: Reverse Transcriptase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F44E7.2 Aff_F44E7.2 P W All gene names: F44E7.2; 5G251; CE17072; WBGene00018424; WP:CE17072 WormBase description: nitrophenylphosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F44F1.4 Aff_F44F1.4 P W All gene names: F44F1.4; 1N856; CE10418; WBGene00009696; WP:CE10418
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F44F1.5 Aff_F44F1.5 P W All gene names: F44F1.5; 1N848; CE10420; WBGene00009697; WP:CE10420
F44F1.7 Aff_F44F1.7 P W All gene names: vet-6; F44F1.7; 1N863; CE10424; NM_060931; WBGene00006902; WBGene00009699; WP:CE10424 WormBase description: vet-6 encodes a protein that contains a spectrin repeat; vet-6 is preferentially transcribed in embryos prior to gastrulation.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45C12.5 Aff_F45C12.5 P W All gene names: fbxb-11; F45C12.5; 2C15; CE10444; WBGene00018436; WP:CE10444 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
F45C12.7 Aff_F45C12.7 P W All gene names: F45C12.7; 2C5; CE10448; WBGene00018438; WP:CE10448
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

F45D11.5 Aff_F45D11_40.I P W All gene names: F45D11.5; F45D11.M; 2B293; CE35934; WBGene00018452; WP:CE35934
F45D3.1 Aff_F45D3.1 P W All gene names: F45D3.1; 5N7; CE10468; WBGene00009721; WP:CE10468
F45E12.1 Aff_F45E12.1 P W All gene names: F45E12.1; 2H603; CE02737; WBGene00018474; WP:CE02737
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4 Early                              
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

F45E4.2 Aff_F45E4.2 P W All gene names: plp-1; F45E4.2; F45E4.2.1; F45E4.2.2; 4I399; CE10494; NM_068840; WBGene00004046; WP:CE10494 WormBase description: plp-1 encodes a protein containing three PUR repeats that are predicted to bind DNA/RNA and has similarity to the mammalian transcription factor pur alpha, and is required for embryonic development, development of the pharynx, and affects formation of the intestine; interacts with an Lef-1 site within the end-1 promoter and binding is regulated by phosphorylation
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Kwon et al 2004 T1 late-induction Ethanol-response,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Romagnolo et al 2002  Fig3b TF,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F45F2.11 Aff_F45F2.11 P W All gene names: F45F2.11; 5J0; CE10536; WBGene00018483; WP:CE10536
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F45H11.2 Aff_F45H11.2 P W All gene names: ned-8; F45H11.2; 1K950; CE10552; NM_060316; WBGene00003587; WP:CE10552 WormBase description: The ned-8 gene encodes a ubiquitin-like protein that is required for both embryogenesis and terminal hypodermal differentiation. WormBase CDS description: ubiquitin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F46B6.4 Aff_F46B6.4 P W All gene names: F46B6.4; 5K258; CE05870; WBGene00009769; WP:CE05870 WormBase description: GTP-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F46B6.7 Aff_F46B6.7 P W All gene names: ztf-7; F46B6.7; F46B6.7.1; F46B6.7.2; 5K268; CE05873; WBGene00009772; WP:CE05873 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F46E10.10 Aff_F46E10.D P W All gene names: F46E10.10; F46E10.10b.1; F46E10.10b.2; F46E10.10c.1; F46E10.10c.2; F46E10.D; F46E10.I; 5G996; CE20820; CE33096; CE33097; WBGene00018491; WP:CE20820; WP:CE33096; WP:CE33097 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F46E10.9 Aff_F46E10.E P W All gene names: dpy-11; F46E10.9; F46E10.9.1; F46E10.9.2; F46E10.9.3; F46E10.E; 5G992; CE20819; NM_072254; WBGene00001073; WP:CE20819 WormBase description: dpy-11 encodes a membrane- associated thioredoxin- like (TRX) protein that affects body shape and ray morphology; the TRX domain displays catalytic activity in vitro, and dpy-11 is expressed in cytoplasm of hypodermis. WormBase CDS description: thioredoxin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster B, Wang et al 2003                            
                                               S4 Climbing, Wang et al 2003  S3  genes pass one-way                              
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

F46F11.4 Aff_F46F11.4 P W All gene names: ubl-5; F46F11.4; 1G176; CE10602; NM_059239; WBGene00006726; WP:CE10602 WormBase description: This gene encodes an ortholog of the human ubiquitin-like gene UBL5, which is a distinct cytoplasmic paralog of nuclear ubiquitin or ubiquitin-like proteins.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F46F3.4 Aff_F46F3.4 P W All gene names: ape-1; F46F3.4; 5M165; CE19874; NM_073554; WBGene00000146; WP:CE19874 WormBase description: P53-binding protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F46H5.3 Aff_F46H5.3 P W All gene names: F46H5.3; F46H5.3b.1; F46H5.3b.2; F46H5.3b.3; CE33098; CE37112; WBGene00018519; WP:CE33098; WP:CE37112; XH850 WormBase description: arginine kinase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig1-4                                 
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

F47B10.9 Aff_F47B10.9 P W All gene names: F47B10.9; CE03359; WBGene00009820; WP:CE03359; XL530
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Romagnolo et                              
                                              al 2002  Fig3b Unkown, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F47D12.4 Aff_F47D12.4 P W All gene names: hmg-1.2; son-1; F47D12.4; 3H371; CE26923; CE28233; CE28234; NM_065974; WBGene00001972; WP:CE26923; WP:CE28233; WP:CE28234
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F47H4.1 Aff_F47H4.1 P W All gene names: F47H4.1; 5R830; CE16062; WBGene00009834; WP:CE16062 WormBase description: Zinc finger, C2H2 type (2 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E                                                                       

F48A11.4 Aff_F48A11.4 P W All gene names: F48A11.4; 2A502; CE32668; WBGene00018585; WP:CE32668
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

F48D6.1 Aff_F48D6.1 P W All gene names: taf-11.1; F48D6.1; F48D6.1.1; F48D6.1.2; TAF7.1; CE07258; NM_076326; WBGene00006393; WP:CE07258; XE875
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F48E8.5 Aff_F48E8.5 P W All gene names: PP2A-A; paa-1; F48E8.5; F48E8.5.1; F48E8.5.2; F48E8.5.3; F48E8.5.4; 3G541; CE30997; NM_065761; WBGene00003901; WP:CE30997 WormBase description: paa-1 encodes a homolog of PR65, the structural subunit of protein phosphatase 2A (PP2A); PAA-1 protein is bound by SMG-5; PAA-1 is required in mass RNAi assays for embryonic viability, fertility, and cuticular integrity. WormBase CDS description: Protein phosphatase 2A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F49B2.2 Aff_F49B2.2 P W All gene names: fbxb-67; F49B2.2; 1O885; CE16073; WBGene00009862; WP:CE16073 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F49E8.3 Aff_F49E8.3 P W All gene names: pam-1; F49E8.3; F49E8.3a.1; F49E8.3a.2; F49E8.3a.3; 4I310; CE10790; CE37649; NM_068819; WBGene00003914; WP:CE10790; WP:CE37649
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Zhang et al 2002, T1 mec-3                                   
                                              dependent genes                                                                    

F49E8.5 Aff_F49E8.5 P W All gene names: dif-1; F49E8.5; F49E8.5.1; F49E8.5.2; 4I316; CE28408; NM_068822; WBGene00000996; WP:CE28408 WormBase description: dif-1 encodes a putative mitochondrial solute carrier, orthologous to human SLC25A20 (OMIM:212138, mutated in carnitine-acylcarnitine translocase deficiency) that is required for the maintenance of embryonic tissue differentiation and viability; expressed throughout development and in the intestinal cells and hypodermis of the embryo. WormBase CDS description: mitochondrial carrier family
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, McCarroll et al 2004  SFig5                              
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 LateList                                      

F49H6.5 Aff_F49H6.5 P W All gene names: F49H6.5; 5R501; CE18715; WBGene00009908; WP:CE18715 WormBase description: The F49H6.5 gene encodes a homolog of the human gene MOCS1A, which when mutated leads to molybdenum cofactor deficiency (OMIM:252150).
F52B11.1 Aff_F52B11.1 P W All gene names: F52B11.1; F52B11.1a.1; F52B11.1a.2; F52B11.1a.3; 4O847; CE33791; CE33792; WBGene00009924; WP:CE33791; WP:CE33792
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F52B11.6 Aff_F52B11.6 P W All gene names: ins-34; F52B11.6; 4O871; CE39736; NM_070301; WBGene00002117; WP:CE39736
F52C12.1 Aff_F52C12.1 P W All gene names: F52C12.1; F52C12.1.1; F52C12.1.2; 4C727; CE19434; WBGene00018678; WP:CE19434
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004,                                
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, GO categories,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F52D2.6 Aff_F52D2.6 P W All gene names: F52D2.6; CE20842; WBGene00018688; WP:CE20842; XC601
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F52E4.1 Aff_F52E4.1 P W All gene names: F52E4.1; F52E4.1a.1; F52E4.1a.2; CE07269; CE30139; WBGene00018701; WP:CE07269; WP:CE30139; XD709 WormBase description: F52E4.1 is orthologous to the human gene PROPIONYL-CoA CARBOXYLASE, BETA SUBUNIT (PCCB; OMIM:232050), which when mutated leads to propionicacidemia; F52E4.1 protein is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0, Zhang et al 2002, T1 mec-3                             
                                              dependent genes                                                                    

F52F12.6 Aff_F52F12.6 P W All gene names: ekl-2; F52F12.6; 1K482; CE24995; WBGene00009939; WP:CE24995 WormBase description: C2HC type zinc finger protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F52H2.7 Aff_F52H2.7 P W All gene names: F52H2.7; CE31179; WBGene00018719; WP:CE31179; XD186
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

F53A2.2 Aff_F53A2.2 P W All gene names: sdz-20; F53A2.2; 3O425; CE16094; WBGene00009950; WP:CE16094
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F53A2.4 Aff_F53A2.4 P W All gene names: nud-1; F53A2.4; 3O429; CE16096; NM_067348; WBGene00003829; WP:CE16096 WormBase description: nud-1 encodes the C. elegans ortholog of the Aspergillus nidulans nudC, which mediates nuclear migration along Aspergillus hyphae.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F53A3.4 Aff_F53A3.4 P W All gene names: pqn-41; F53A3.4; 3D27; CE28443; NM_065077; WBGene00004128; WP:CE28443 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F53B3.5 Aff_F53B3.4 P W All gene names: F53B3.5; CE30142; WBGene00018743; WP:CE30142; XD492 WormBase description: F53B3.5 encodes a claudin homolog that may regulate ion channels; F53B3.5 is distantly similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin; MGI:1316660); F53B3.5 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Wang et al 2003  S4 Climbing, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F53C11.4 Aff_F53C11.4 P W All gene names: F53C11.4; F53C11.4.1; F53C11.4.2; 5O266; CE17853; WBGene00009974; WP:CE17853
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F53C11.7 Aff_F53C11.7 P W All gene names: swan-2; tag-206; F53C11.7; F53C11.7.1; F53C11.7.2; F53C11.7.3; 5O282; CE24997; WBGene00009976; WP:CE24997 WormBase description: Yeast hypothetical protein YPL247C like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F53C11.8 Aff_F53C11.8 P W All gene names: swan-1; F53C11.8; F53C11.8.1; F53C11.8.2; 5O286; CE10918; WBGene00009977; WP:CE10918 WormBase description: Yeast hypothetical protein YPL247C like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

F53C3.2 Aff_F53C3.2 P W All gene names: fbxb-103; F53C3.2; 2E197; CE19440; WBGene00018746; WP:CE19440 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

F53E2.1 Aff_F53E2.A P W All gene names: tag-304; F53E2.1; F53E2.A; 5B949; CE30280; WBGene00018757; WP:CE30280
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F53F10.5 Aff_F53F10.5 P W All gene names: npp-11; F53F10.5; F53F10.5.1; F53F10.5.2; 1E389; CE10988; NM_058831; WBGene00003797; WP:CE10988
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 Early genes,                               
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

F53F8.5 Aff_F53F8.5 P W All gene names: F53F8.5; 5V168; CE17859; WBGene00010002; WP:CE17859
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes                                        

F53G2.6 Aff_F53G2.6 P W All gene names: tsr-1; F53G2.6; 2C752; CE37021; NM_061878; WBGene00006647; WP:CE37021 WormBase description: tsr-1 encodes a homolog of human transportin-SR, a nuclear transport receptor, and affects embryonic viability.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

F53G2.7 Aff_F53G2.7 P W All gene names: mnat-1; F53G2.7; F53G2.7.1; F53G2.7.2; 2C764; CE31957; WBGene00018769; WP:CE31957
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F53H1.3 Aff_F58F6.7 P W All gene names: F53H1.3; 4C103; CE31538; WBGene00018777; WP:CE31538
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F53H8.1 Aff_F53H8.1 P W All gene names: apm-3; apt-7; F53H8.1; CE35723; NM_075783; WBGene00000164; WP:CE35723; XB573 WormBase description: apt-7 gene encodes an adaptin, orthologous to the mu3 subunit of adaptor protein complex 3 (AP-3); APT-7 is also orthologous to human HPS, which when mutated leads to Hermansky-Pudlak syndrome (OMIM:203300); based on structural similarity, APT-7 may be involved in the formation of intracellular transport vesicles. WormBase CDS description: clathrin coat assembly protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F53H8.2 Aff_F53H8.2 P W All gene names: arr-1; F53H8.2; CE28831; NM_075782; WBGene00000195; WP:CE28831; XB571 WormBase description: arr-1 encodes the C. elegans beta-arrestin ortholog (OMIM:107940, 107941, mice lacking beta-arrestin family members display defects in G protein-coupled receptor desensitization); by homology, ARR-1 is predicted to be a multifunctional adaptor protein that interacts with intracellular signaling molecules as well as activated and phosphorylated G protein-coupled and TGF-beta receptors to: 1) downregulate receptor signaling, 2) promote receptor endocytosis, and 3) activate MAP kinase- and Src-dependent signaling pathways; in C. elegans, loss of arr-1 function via mutation or RNAi does not result in any obvious abnormalities and, in particular, does not appear to affect chemosensation or odorant discrimination; however, animals doubly mutant for arr-1 and grk-2, which encodes a G protein-coupled receptor kinase, are sick and slow growing; an arr-1 transcriptional reporter is expressed in neurons, including the ASH chemosensory neurons, and in the intestine WormBase CDS description: beta-arrestin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F54A5.1 Aff_C54G6.4 P W All gene names: F54A5.1; F54A5.1.1; F54A5.1.2; F54A5.E; 1B465; CE20859; WBGene00018786; WP:CE20859
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster B, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F54D10.1 Aff_F54D10.1 P W All gene names: skr-15; F54D10.1; 2E115; CE19451; NM_062261; WBGene00004821; WP:CE19451 WormBase description: The skr-15 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-15(RNAi) animals are at least superficially normal.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, intrinsic, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

F54D8.3 Aff_F54D8.3 P W All gene names: alh-1; F54D8.3; F54D8.3a.1; F54D8.3a.2; F54D8.3b.1; F54D8.3b.2; F54D8.3b.3; 3G169; CE29809; CE32434; NM_065680; NM_181921; WBGene00000107; WP:CE29809; WP:CE32434 WormBase description: alh-1 is orthologous to the human gene ALDEHYDE DEHYDROGENASE 2, MITOCHONDRIAL (ALDH2; OMIM:100650), in which a polymorphism can lead to acute ethanol intolerance.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F54E12.4 Aff_F54E12.4 P W All gene names: his-58; F54E12.4; 4M104; NM_069739; WBGene00001932 WormBase description: his-58 encodes an H2B histone. WormBase CDS description: histone H2B
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Zhang et al 2002, T1 mec-3 dependent genes                              

F54E7.5 Aff_F54E7.5 P W All gene names: sdz-21; F54E7.5; 3G744; CE01316; WBGene00018828; WP:CE01316
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F54F7.6 Aff_F54F7.6 P W All gene names: F54F7.6; CE03421; WBGene00010066; WP:CE03421; XM483
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

F55A11.3 Aff_F55A11.3 P W All gene names: F55A11.3; F55A11.3.1; F55A11.3.2; 5M249; CE05945; WBGene00010076; WP:CE05945 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

F55A3.3 Aff_F55A3.3 P W All gene names: phi-16; F55A3.3; 1L369; CE17113; WBGene00018849; WP:CE17113 WormBase description: transcritpion factor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F55B12.4 Aff_F55B12.4 P W All gene names: F55B12.4; F55B12.4.1; F55B12.4.2; F55B12.4.3; CE26815; WBGene00010089; WP:CE26815 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: poly(A) polymerase like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                            
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset                                                                            

F55C10.2 Aff_F55C10.2 P W All gene names: col-154; F55C10.2; 5L865; CE05952; NM_073485; WBGene00000727; WP:CE05952 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F55C5.5 Aff_F55C5.5 P W All gene names: EF-TS; tsfm-1; F55C5.5; 5M750; CE11158; WBGene00010094; WP:CE11158 WormBase description: F55C5.5 encodes a translational elongation factor Ts (EF-Ts) that binds two different EF-Tu proteins (EF-TU1/Y71H2AM.23 and EF-TU2/C43E11.4) in vitro, stimulating guanine-nucleotide exchange and mRNA translation; F55C5.5 is predicted to be mitochondrial and has a putative N-terminal transit peptide sequence; F55C5.5 is required in mass RNAi assays for normally rapid growth and for maintenance of the germline. WormBase CDS description: mitochondrial elongation factor TS
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster C, Reinke et al                               
                                              2004, GO categories, Wang et al 2003  S3  genes pass                               
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F55C5.8 Aff_F55C5.8 P W All gene names: F55C5.8; 5M770; CE20875; WBGene00010097; WP:CE20875 WormBase description: signal recognition particle 68 KD protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F55C9.10 Aff_Y116F11.H P W All gene names: fbxb-61; F55C9.10; 5T775; CE18742; WBGene00010106; WP:CE18742 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.4 Aff_F55C9.4 P W All gene names: fbxb-57; F55C9.4; 5T763; CE18736; WBGene00010101; WP:CE18736 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.7 Aff_F55C9.7, Aff_Y116F11.F P W All gene names: fbxb-60; F55C9.7; 5T771; CE18739; WBGene00010104; WP:CE18739 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.8 Aff_F55C9.8 P W All gene names: fbxb-62; F55C9.8; 5T772; CE18740; WBGene00010105; WP:CE18740 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F55G1.3 Aff_F55G1.3 P W All gene names: his-62; F55G1.3; 4I251; NM_068801; WBGene00001936 WormBase description: his-62 encodes an H2B histone. WormBase CDS description: Histone
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F55G1.4 Aff_F55G1.4 P W All gene names: rod-1; F55G1.4; 4I249; CE07281; NM_068799; WBGene00018900; WP:CE07281
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56A6.4 Aff_Y65B4A_173.A P W All gene names: F56A6.4; 1B88; CE34319; WBGene00018923; WP:CE34319
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56A8.5 Aff_F56A8.5 P W All gene names: F56A8.5; 3O357; CE16125; WBGene00010141; WP:CE16125 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

F56A8.8 Aff_F56A8.8 P W All gene names: F56A8.8; 3O375; CE16128; WBGene00010142; WP:CE16128
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F56B3.4 Aff_F56B3.4 P W All gene names: skr-18; F56B3.4; 4B540; CE29969; CE37243; WBGene00004824; WP:CE29969; WP:CE37243 WormBase description: skr-18 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-18 has no known function in vivo, since skr-18(RNAi) animals are at least superficially normal.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S5                                 
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

F56B6.2 Aff_F56B6.3 P W All gene names: rgs-7; F56B6.2; CE29403; CE29404; CE30151; CE39019; NM_076209; WBGene00004350; WBGene00018936; WP:CE29403; WP:CE29404; WP:CE30151; WP:CE39019; XE175 WormBase description: F56B6.2 encodes three isoforms of an atypical regulator of G protein signaling (RGS) protein that contains both a C2 and an RGS domain, and that binds EGL-30 via both domains, similar in organization to mammalian PDZ-RGS3; the RGS domain has GTPase activator protein (GAP) activity in vitro on mammalian G[alphai]3; F56B6.2 thus may stably bind EGL-30 at all stages of EGL-30's GTPase cycle, might organize EGL-30 into a stable multiprotein signalling complex (with GTP[gamma]S), and might persistently inhibit EGL-30 when triggered by calcium or phospholipids; F56B6.2 has no obvious function in mass RNAi assays
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F56C9.1 Aff_F56C9.1 P W All gene names: CEGLC-7B; Ce-glc-7beta; gsp-2; F56C9.1; F56C9.1.1; F56C9.1.2; 3I433; CE01319; WBGene00001748; WP:CE01319
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

F56C9.10 Aff_F56C9.10 P W All gene names: F56C9.10; F56C9.10b.1; F56C9.10b.2; 3I420; CE01320; CE31003; WBGene00018953; WP:CE01320; WP:CE31003
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F56D1.4 Aff_F56D1.4 P W All gene names: clr-1; F56D1.4; 2F767; CE32051; CE32052; CE32053; WBGene00000548; WP:CE32051; WP:CE32052; WP:CE32053 WormBase description: A receptor tyrosine phosphatase that negatively regulates the FGF receptorsignaling pathway; it localizes to the plasma membrane.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F56D2.6 Aff_F56D2.6 P W All gene names: F56D2.6; F56D2.6b.1; F56D2.6b.2; 3G680; CE01334; CE32900; WBGene00018967; WP:CE01334; WP:CE32900 WormBase description: The F56D2.6 gene encodes a DEAH helicase orthologous to the Drosophila CG11107, the human DDX15, and the S. cerevisiae PRP43 proteins.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, Wang et al 2003  S5 genes common to feeding                            
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F56D5.5 Aff_F56D5.5 P W All gene names: F56D5.5; 4K172; CE05961; WBGene00010149; WP:CE05961
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              list of genes in cluster E                                                         

F56F11.4 Aff_F56F11.4 P W All gene names: F56F11.4; 3D953; CE28467; CE31008; WBGene00018991; WP:CE28467; WP:CE31008 WormBase description: 26S protease regulatory subunit
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

F56F4.1 Aff_F56F4.1 P W All gene names: sdz-22; F56F4.1; 1G727; CE39020; WBGene00018978; WP:CE39020
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F56H1.5 Aff_F56H1.5 P W All gene names: F56H1.5; 1G338; CE17916; WBGene00018995; WP:CE17916
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

F57B9.5 Aff_F57B9.5 P W All gene names: byn-1; F57B9.5; F57B9.5.1; F57B9.5.2; 3I25; CE25013; NM_066109; WBGene00000276; WP:CE25013 WormBase description: byn-1 encodes a homolog of mammalian BYSTIN-LIKE (BYSL; OMIM:603871).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F57G8.8 Aff_F57G8.2 P W All gene names: srv-36; F57G8.8; 5Q806; CE35184; NM_074725; WBGene00005747; WP:CE35184
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F57G9.3 Aff_F57G9.3 P W All gene names: F57G9.3; 2M700; CE17919; WBGene00010219; WP:CE17919
F58A4.6 Aff_F58A4.6 P W All gene names: F58A4.6; 3K703; CE34192; WBGene00010229; WP:CE34192
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, herm soma                                 
                                              enriched genes                                                                     

F58B3.5 Aff_F58B3.5 P W All gene names: mrs-1; F58B3.5; 4M398; CE06007; NM_069795; WBGene00003415; WP:CE06007 WormBase description: mrs-1 encodes a predicted cytoplasmic methionyl-tRNA synthetase (MetRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of methionine to its cognate tRNA and is thus required for protein biosynthesis; MRS-1 is essential for embryogenesis and required also for a normal rate of postembryonic growth. WormBase CDS description: methionyl-tRNA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

F58B3.9 Aff_F58B3.9 P W All gene names: F58B3.9; 4M404; CE11362; WBGene00010234; WP:CE11362 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F58E1.5 Aff_F58E1.5 P W All gene names: fbxb-17; F58E1.5; 2B965; CE11380; WBGene00019037; WP:CE11380 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F58E10.3 Aff_F58E10.3 P W All gene names: F58E10.3; F58E10.3.1; F58E10.3.2; F58E10.3.3; F58E10.3.4; F58E10.3.5; F58E10.3.6; 5O490; CE18785; WBGene00010260; WP:CE18785 WormBase description: ATP-dependent helicase (DEAD box)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

F58G4.4 Aff_F58G4.4 P W All gene names: sdz-23; F58G4.4; 5I575; CE07309; WBGene00019066; WP:CE07309
F59A2.3 Aff_F59A2.3 P W All gene names: F59A2.3; F59A2.3.1; F59A2.3.2; 3E487; CE17940; WBGene00010303; WP:CE17940 WormBase description: Splicing factor-associated 32K chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

F59A3.9 Aff_F59A3.9 P W All gene names: F59A3.9; 1G100; CE11432; WBGene00019082; WP:CE11432
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

F59C6.4 Aff_F59C6.4 P W All gene names: F59C6.4; 1L95; CE11462; WBGene00010325; WP:CE11462
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, Reinke et al 2004,                                
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

F59E10.1 Aff_F59E10.1 P W All gene names: orc-2; F59E10.1; 2L167; CE11492; NM_063938; WBGene00003882; WP:CE11492; ceOrc2 WormBase description: origin recognition complex, second largest subunit ORC2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F59E12.10 Aff_F59E12.10 P W All gene names: ddl-1; F59E12.10; 2F936; CE11536; WBGene00019125; WP:CE11536
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

F59G1.5 Aff_F59G1.5 P W All gene names: ptp-2; stp-1; F59G1.5; F59G1.5.1; F59G1.5.2; 2G211; CE02705; NM_062783; WBGene00004214; WP:CE02705 WormBase description: PROTEIN-TYROSINE PHOSPHATASE
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

H04J21.3 Aff_H04J21.3 P W All gene names: gip-1; H04J21.3; H04J21.3a.1; H04J21.3a.2; 3D451; CE31849; CE32450; CE34566; CeGrip; NM_065139; WBGene00001589; WP:CE31849; WP:CE32450; WP:CE34566 WormBase description: gip-1 encodes the C. elegans homolog of Saccharomyces cerevisiae Spc98p, a gamma-tubulin-binding protein that with Spc97p forms part of a gamma-tubulin ring complex that can nucleate microtubule formation in vitro and in vivo; in C. elegans, GIP-1 is essential for embryogenesis and required for formation of centrosomal asters during interphase and formation of the mitotic spindle, but not for formation of mitotic asters; GIP-1 colocalizes with TBG-1/gamma-tubulin to centrosomes during interphase and mitosis; GIP-1 and TBG-1 are required reciprocally for centrosomal localization.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

H06O01.3 Aff_H06O01.3 P W All gene names: H06O01.3; 1H585; CE17969; WBGene00010370; WP:CE17969 WormBase description: retinal-binding protein like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

H14E04.2 Aff_H14E04.E P W All gene names: H14E04.2; 3D473; CE20966; CE20967; CE29974; CE32458; WBGene00019199; WP:CE20966; WP:CE20967; WP:CE29974; WP:CE32458
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

H17B01.1 Aff_Y51H7B_4.B P W All gene names: H17B01.1; 2B799; CE27184; CE27185; WBGene00019207; WP:CE27184; WP:CE27185 WormBase description: sugar transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes                                                                     

H17B01.4 Aff_H17B01.4 P W All gene names: H17B01.4; H17B01.4b.1; H17B01.4b.2; 2B780; CE27186; CE33410; WBGene00019209; WP:CE27186; WP:CE33410
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

H20J04.2 Aff_H20J04_865.B P W All gene names: H20J04.2; 2E639; CE27187; WBGene00019217; WP:CE27187
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

H21P03.3 Aff_H21P03.3 P W All gene names: sms-1; H21P03.3; 4M248; CE19930; CE23816; NM_069767; NM_069768; WBGene00004892; WP:CE19930; WP:CE23816
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

H28O16.2 Aff_H28O16.2 P W All gene names: H28O16.2; 1N240; CE34196; WBGene00010420; WP:CE34196
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

H38K22.1 Aff_H38K22.1 P W All gene names: evl-14; H38K22.1; 3F394; CE33526; NM_065464; WBGene00001352; WP:CE33526 WormBase description: evl-14 encodes a homolog of the yeast sister cohesion protein Pds5p that functions during both mitosis and meiosis and is implicated in the maintenance of sister chromatid cohesion in late prophase, and affects vulval morphology, meiotic germline development, embryonic and larval viability, fertility, and cell divisions in the germ line as well as in vulval and somatic gonad lineages; some of the defects, such as somatic gonad defects, are due at least partially to cell division defects.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

H42K12.1 Aff_H33H01.A P W All gene names: pdk-1; H33H01.A; H42K12.1; CE28739; CE28740; WBGene00003965; WP:CE28739; WP:CE28740; XB945 WormBase description: The pdk-1 gene encodes an ortholog of the human 3-phosphoinositide dependent kinase 1 (PDK1; OMIM:605213).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma                                                   

K01C8.6 Aff_K01C8.6 P W All gene names: K01C8.6; 2I566; CE02267; WBGene00010458; WP:CE02267 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K01G5.9 Aff_K01G5.9 P W All gene names: K01G5.9; K01G5.9.1; K01G5.9.2; K01G5.9.3; 3L851; CE33132; WBGene00010480; WP:CE33132
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E                                                   

K02B12.2 Aff_K02B12.2 P W All gene names: K02B12.2; 1J88; CE06063; WBGene00010495; WP:CE06063
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, list                            
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

K02E7.9 Aff_K02E7.9 P W All gene names: K02E7.9; 2B350; CE11638; WBGene00019313; WP:CE11638
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

K02F2.2 Aff_K02F2.2 P W All gene names: K02F2.2; K02F2.2.1; K02F2.2.2; 1H413; CE17154; CEAHH; WBGene00019322; WP:CE17154 WormBase description: S-adenosylhomocysteine hydrolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

K02F3.11 Aff_K02F3.11 P W All gene names: rnp-5; K02F3.11; 3B470; CE29981; NM_064875; WBGene00004388; WP:CE29981 WormBase description: rnp-5 encodes a putative member of the exon-exon junction complex, orthologous to human RNPS1 (OMIM:606447); RNP-5 is dispensable for embryonic viability. WormBase CDS description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K03H1.2 Aff_K03H1.2 P W All gene names: mog-1; K03H1.2; 3L42; CE01027; NM_066811; WBGene00003389; WP:CE01027 WormBase description: The mog-1 gene encodes a DEAH helicase orthologous to the Drosophila CG1375/1405, the human PRP16, and the S. cerevisiae PRP16 proteins. WormBase CDS description: RNA helicase (DEAH subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K04B12.2 Aff_K04B12.2 P W All gene names: K04B12.2; K04B12.2b.1; K04B12.2b.2; K04B12.2b.3; 2O722; CE35576; CE35577; WBGene00010550; WP:CE35576; WP:CE35577
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K04D7.1 Aff_K04D7.1 P W All gene names: K04D7.1; K04D7.1.1; K04D7.1.2; K04D7.1.3; K04D7.1.4; 4K941; CE06090; WBGene00010556; WP:CE06090 WormBase description: guanine nucleotide-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K04F10.6 Aff_K04F10.6 P W All gene names: rde-3; K04F10.6; 1G930; CE11740; CE33137; NM_059433; NM_182080; WBGene00004325; WBGene00019398; WP:CE11740; WP:CE33137 WormBase description: rde-3 encodes a nucleotidyltransferase that is a member of the polymerase beta nucleotidyltransferase superfamily that includes poly(A) polymerases, 2-5 oligoadenylate synthetases, C. elegans GLD-2, and S. cerevisiae Trf4p; by homology, RDE-3 is predicted to function as a poly(A) polymerase whose activity is required for meiotic chromosome segregation, negative regulation of DNA transposition, non-transgene-induced RNAi (i.e. RNAi via feeding is affected, whereas RNAi via expression of sense and antisense RNA from a transgene is not), fertility, and viability; analysis of siRNA levels in rde-3 mutant animals indicates that during RNAi, RDE-3 activity is required at a point upstream of siRNA accumulation; neither the precise mechanistic role of RDE-3 in posttranscriptional silencing, nor the RDE-3 expression pattern, is yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

K04F10.7 Aff_K04F10.7 P W All gene names: K04F10.7; 1G943; CE18015; WBGene00019399; WP:CE18015
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E                                                

K04G2.1 Aff_K04G2.1 P W All gene names: phi-17; K04G2.1; K04G2.1.1; K04G2.1.2; 1I604; CE16227; WBGene00010560; WP:CE16227 WormBase description: translational initiation factor 2 beta subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

K04G2.10 Aff_K04G2.10 P W All gene names: K04G2.10; 1I637; CE06104; WBGene00010568; WP:CE06104
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

K04G2.2 Aff_K04G2.2 P W All gene names: K04G2.2; 1I607; CE37533; WBGene00010561; WP:CE37533 WormBase description: BEM-1/BUD5 suppressor-like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang                             
                                              et al 2003  S5 genes common to feeding ANOVA, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA                                              

K04G2.5 Aff_K04G2.5 P W All gene names: ath-1; K04G2.5; K04G2.5.1; K04G2.5.2; 1I614; CE27390; NM_059812; WBGene00010564; WP:CE27390 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: esterase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

K05C4.6 Aff_K05C4.6 P W All gene names: hmp-2; K05C4.6; KO5C4.6; 1P333; CE19974; NM_061165; WBGene00001979; WP:CE19974 WormBase description: hmp-2 encodes a beta-catenin; HMP-2 activity is required during embryonic development for cell adhesion at adherens junctions, cell migration, and body morphogenesis; as a beta-catenin, HMP-2 likely functions solely as part of a cadherin-catenin complex, as in yeast two-hybrid assays, HMP-2 is the only C. elegans beta-catenin that binds HMP-1/alpha-catenin and HMR-1/cadherin; additionally, in the embryo, HMP-2 co-localizes to sites of epithelial cell contacts with HMP-1 and HMR-1/cadherin; however, despite its normal role in embryonic cell adhesion, HMP-2 can activate transcription and when overexpressed in vivo, can partially rescue vulval defects produced by loss of BAR-1/beta-catenin, suggesting that HMP-2 has retained the ability to inter