Baugh et al 2003, subclass ETmax_122min, 116 genes

Gene list file name:Baugh2003_classETmax_122min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass ETmax_122min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_F17C11.1 Aff_F17C11.1 P W
AFF_Y13C8_223.B Aff_Y13C8_223.B P W
AFF_Y41D4A_2491.A Aff_Y41D4A_2491.A P W
AFF_Y56A3A.W Aff_Y56A3A.W P W
C03B1.12 Aff_C03B1.12 P W All gene names: lmp-1; C03B1.12; C03B1.12.1; C03B1.12.2; CE03912; NM_076671; WBGene00003053; WP:CE03912; XG996 WormBase description: lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus; localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C06A5.2 Aff_C06A5.2 P W All gene names: C06A5.2; 1G583; CE07949; WBGene00015500; WP:CE07949
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, shared sperm                                                    

C06A6.2 Aff_C06A6.1 P W All gene names: C06A6.2; 4I617; CE31152; CE31153; WBGene00015507; WP:CE31152; WP:CE31153
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C08A9.6 Aff_C08A9.6 P W All gene names: C08A9.6; CE06788; WBGene00015586; WP:CE06788; XR708
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C26E6.8 Aff_C26E6.8 P W All gene names: ula-1; C26E6.8; C26E6.8.1; C26E6.8.2; 3G8; CE29678; NM_065636; WBGene00006735; WP:CE29678 WormBase description: The ula-1 gene encodes a component of the enzyme that activates NED-8, which in turn is a ubiquitin-like protein whose conjugating enzyme is UBC-12.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C29A12.3 Aff_C29A12.3 P W All gene names: lig-1; C29A12.3; 5L295; CE37480; CE37481; NM_171537; NM_171538; WBGene00002985; WP:CE37480; WP:CE37481 WormBase description: lig-1 is orthologous to the human gene LIM HOMEOBOX PROTEIN 3 ISOFORM B (LIG1; OMIM:600577), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C33C12.5 Aff_C33C12.5 P W All gene names: fbxb-38; C33C12.5; 2C458; CE08553; WBGene00016337; WP:CE08553 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

C35C5.1 Aff_C35C5.1 P W All gene names: sdc-2; C35C5.1; CE18542; NM_077523; WBGene00004746; WP:CE18542; XM151 WormBase description: The sdc-2 gene encodes a protein that represses transcription of X chromosomes to achieve dosage compensation, and that also represses the male sex-determination gene her-1 to elicit hermaphrodite differentiation.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C37A2.5 Aff_F08B6.A P W All gene names: pqn-21; C37A2.5; 1H350; CE27748; CE32818; WBGene00004111; WP:CE27748; WP:CE32818 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C42D4.6 Aff_C42D4.6 P W All gene names: skr-16; C42D4.6; 4H931; CE37712; NM_068727; WBGene00004822; WP:CE37712 WormBase description: The skr-16 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-16(RNAi) animals are at least superficially normal.
C43D7.8 Aff_Y116F11.I P W All gene names: C43D7.8; 5T784; CE18552; WBGene00008070; WP:CE18552 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C44C8.2 Aff_C44C8.2 P W All gene names: C44C8.2; 4B653; CE17542; WBGene00016647; WP:CE17542
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C48D1.1 Aff_C48D1.1 P W All gene names: C48D1.1; 4N958; CE32833; CE39701; WBGene00008177; WP:CE32833; WP:CE39701 WormBase description: C.elegans ZYG-11 like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes                                                                              

D1046.1 Aff_D1046.1 P W All gene names: D1046.1; D1046.1.1; D1046.1.2; D1046.1.3; D1046.1.4; 4J693; CE03094; WBGene00008362; WP:CE03094 WormBase description: glycine-rich RNA-binding protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen                                                               

E03E2.1 Aff_E03E2.1 P W All gene names: cyp-43A1; E03E2.1; E03E2.1.1; E03E2.1.2; CE29747; NM_076560; WBGene00017108; WP:CE29747; XG335 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

EGAP2.1 Aff_EGAP2.1 P W All gene names: EGAP2.1; 2F523; CE35268; WBGene00017147; WP:CE35268
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F07A11.5 Aff_F07A11.5 P W All gene names: F07A11.5; 2L903; CE03147; WBGene00008548; WP:CE03147 WormBase description: ribokinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F07E5.2 Aff_F07E5.2 P W All gene names: fbxb-35; F07E5.2; 2C343; CE09215; WBGene00017208; WP:CE09215 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F09F7.6 Aff_F09F7.6 P W All gene names: F09F7.6; 3G640; CE01238; WBGene00017303; WP:CE01238
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F10D2.12 Aff_F10D2.8 P W All gene names: F10D2.12; 5H628; CE30746; WBGene00017337; WP:CE30746
F12F6.1 Aff_F12F6.1 P W All gene names: F12F6.1; 4M351; CE34803; WBGene00008720; WP:CE34803
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

F15A4.2 Aff_F15A4.2 P W All gene names: F15A4.2; 2M755; CE15839; WBGene00008838; WP:CE15839 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F16H11.2 Aff_F16H11.2 P W All gene names: F16H11.2; CE04397; WBGene00017531; WP:CE04397; XF281
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F20D1.3 Aff_F20D1.3 P W All gene names: F20D1.3; F20D1.3.1; F20D1.3.2; CE31486; WBGene00008975; WP:CE31486; XP595
F25E2.5 Aff_F25E2.5 P W All gene names: daf-3; F25E2.5; CE26364; CE28002; CE30963; NM_075760; WBGene00000899; WP:CE26364; WP:CE28002; WP:CE30963; XB438 WormBase description: daf-3 encodes a Smad protein; DAF-3 functions as a transcriptional regulator that is required for formation of the alternative dauer larval stage; DAF-3 activity is antagonized by signaling through the DAF-7/TGF-beta pathway which promotes reproductive growth; in yeast two-hybrid studies, DAF-3 interacts with SMA-3, another Smad protein that does not appear to have a role in dauer formation; a DAF-3::GFP fusion protein is expressed in many tissues that undergo remodeling during dauer development; DAF-3 localizes predominantly to the cytoplasm, but is also found associated with chromosomes in mitotic cells.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

F29C4.7 Aff_F29C4.7 P W All gene names: F29C4.7; F29C4.7a.1; F29C4.7a.2; F29C4.7b.1; F29C4.7b.2; 4A876; CE17724; CE31493; CE37226; WBGene00017929; WP:CE17724; WP:CE31493; WP:CE37226 WormBase description: F29C4.7 is orthologous to human RBM15 (OMIM:606077, mutated in infantile acute megakaryoblastic leukemia) and Drosophila NITO; F29C4.7 encodes a paralog of DIN-1; like DIN-1, it has N-terminal RNA recognition motifs (RRMs) and a C-terminal SID/RD (SMRT interaction domain/repressor) domain.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

F35E2.8 Aff_F35E2.8 P W All gene names: F35E2.8; 1M309; CE17777; WBGene00009415; WP:CE17777 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40F9.7 Aff_F40F9.7 P W All gene names: F40F9.7; F40F9.7a.1; F40F9.7a.2; F40F9.7b.1; F40F9.7b.2; F40F9.7b.3; F40F9.7b.4; 5K213; CE05856; CE33580; WBGene00009584; WP:CE05856; WP:CE33580
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F45C12.6 Aff_F45C12.6 P W All gene names: F45C12.6; 2C13; CE10446; WBGene00018437; WP:CE10446
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F45D11.5 Aff_F45D11_40.I P W All gene names: F45D11.5; F45D11.M; 2B293; CE35934; WBGene00018452; WP:CE35934
F45H11.2 Aff_F45H11.2 P W All gene names: ned-8; F45H11.2; 1K950; CE10552; NM_060316; WBGene00003587; WP:CE10552 WormBase description: The ned-8 gene encodes a ubiquitin-like protein that is required for both embryogenesis and terminal hypodermal differentiation. WormBase CDS description: ubiquitin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F47D12.5 Aff_F47D12.5 P W All gene names: F47D12.5; 3H372; CE01949; WBGene00018561; WP:CE01949
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F49H12.1 Aff_F49H12.I P W All gene names: lsy-2; F49H12.1; F49H12.1b.1; F49H12.1b.2; CE28437; CE38521; NM_075984; WBGene00003087; WP:CE28437; WP:CE38521; XC711 WormBase description: C2H2-type zinc finger protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F53F10.5 Aff_F53F10.5 P W All gene names: npp-11; F53F10.5; F53F10.5.1; F53F10.5.2; 1E389; CE10988; NM_058831; WBGene00003797; WP:CE10988
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 Early genes,                               
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

F55C9.3 Aff_F55C9.3 P W All gene names: F55C9.3; 5T762; CE18735; WBGene00010100; WP:CE18735
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F55C9.4 Aff_F55C9.4 P W All gene names: fbxb-57; F55C9.4; 5T763; CE18736; WBGene00010101; WP:CE18736 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F56A6.2 Aff_F56A6.2 P W All gene names: hum-7; F56A6.2; 1B60; CE23779; NM_058354; WBGene00002040; WP:CE23779 WormBase description: hum-7 encodes a class IX unconventional myosin heavy chain that contains a myosin motor domain in the head region and zinc-finger and rhoGAP (rho GTPase activating protein) domains in the tail region; HUM-7 is required during embryogenesis for cytokinesis and normal cytoplasmic rearrangements, and by homology, may function in organization of the actin cytoskeleton; the precise expression and localization patterns of HUM-7 are not yet known. WormBase CDS description: myosin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F58D2.1 Aff_F58D2.1 P W All gene names: F58D2.1; 4N951; CE18782; WBGene00010240; WP:CE18782 WormBase description: C.elegans ZYG-11 protein like
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

F58E1.8 Aff_F58E1.8 P W All gene names: fbxb-18; F58E1.8; 2B974; CE11386; WBGene00019039; WP:CE11386 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains leucine-rich repeats.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F58E1.9 Aff_F58E1.9 P W All gene names: fbxb-19; F58E1.9; 2B976; CE11388; WBGene00019040; WP:CE11388 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F58G6.1 Aff_F58G6.1 P W All gene names: F58G6.1; F58G6.1.1; F58G6.1.2; 4K410; CE03428; WBGene00010272; WP:CE03428 WormBase description: amphiphysin like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F58G6.5 Aff_F58G6.5 P W All gene names: nhr-34; F58G6.5; 4K430; CE27764; CE35564; CE35565; NM_069315; NM_171412; WBGene00003627; WP:CE27764; WP:CE35564; WP:CE35565 WormBase description: nhr-34 encodes a member of the nuclear receptor superfamily; phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans; the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known.
F59B2.3 Aff_F59B2.3 P W All gene names: F59B2.3; 3K88; CE00231; WBGene00010308; WP:CE00231 WormBase description: N-acetyl-glucosamine-6-phosphate deacetylase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F59F5.8 Aff_F59F5.2 P W All gene names: F59F5.8; CE26716; WBGene00010346; WP:CE26716
H40L08.1 Aff_H40L08.1 P W All gene names: H40L08.1; CE16188; WBGene00010433; WP:CE16188; XP700
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

K07F5.1 Aff_K07F5.1 P W All gene names: msp-81; K07F5.1; 4K600; NM_069358; WBGene00003467 WormBase description: msp-81 encodes a member of the major sperm protein family. WormBase CDS description: major sperm protein
K09F6.8 Aff_K09F6.8 P W All gene names: K09F6.8; 2C584; CE12038; WBGene00019591; WP:CE12038
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K10C9.3 Aff_K10C9.3 P W All gene names: K10C9.3; 5B565; CE28601; WBGene00019624; WP:CE28601 WormBase description: ribonuclease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Romagnolo et al 2002  Fig3b Metabolism                                  

K12D12.1 Aff_K12D12.1 P W All gene names: K12D12.1; 2M169; CE06184; WBGene00010785; WP:CE06184 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: DNA topoisomerase II
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, GO                                     
                                              categories                                                                         

M01D1.3 Aff_F45D11_40.A, Aff_M01D1.3 P W All gene names: M01D1.3; 2B314; CE23871; WBGene00019700; WP:CE23871
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

M117.5 Aff_M117.5 P W All gene names: fbxb-4; M117.5; 4M595; CE18086; WBGene00010921; WP:CE18086 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

M7.5 Aff_M7.5 P W All gene names: M7.5; M7.5.1; M7.5.2; 4L844; CE18887; WBGene00010882; WP:CE18887 WormBase description: Yeast YHX1 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, GO                               
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

R04A9.5 Aff_R04A9.5 P W All gene names: R04A9.5; CE39755; WBGene00019864; WP:CE39755; XB4
R04B3.2 Aff_R04B3.2 P W All gene names: R04B3.2; CE28745; WBGene00019867; WP:CE28745; XD90 WormBase description: The R04B3.2 gene encodes an ortholog of the human gene LYSOSOMAL GLYCOSYLASPARAGINASE (AGA; OMIM:208400), which when mutated leads to aspartylglucosaminuria (OMIM:208400). WormBase CDS description: glycosylasparaginase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R06A4.8 Aff_R06A4.8 P W All gene names: R06A4.8; 2O638; CE18115; WBGene00011050; WP:CE18115 WormBase description: R06A4.8 is orthologous to the human gene GLYCOGEN DEBRANCHING ENZYME ISOFORM 6 (AGL; OMIM:232400), which when mutated leads to glycogen storage disease, type III. WormBase CDS description: Alpha amylase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

R06C7.3 Aff_R06C7.3 P W All gene names: CeCRMP/DHP-1; dhp-1; R06C7.3; R06C7.3.1; R06C7.3.2; 1H816; CE30293; NM_170899; WBGene00000963; WP:CE30293 WormBase description: The R06C7.3 gene encodes a homolog of the human gene DPYS, which when mutated leads to dihydropyrimidinuria (OMIM:222748). WormBase CDS description: dihydropyrimidinase
R11.1 Aff_R11.1 P W All gene names: R11.1; CE31578; WBGene00011226; WP:CE31578; XQ807 WormBase description: mitochondrial transporter protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R52.1 Aff_R52.1 P W All gene names: bath-16; sdz-28; R52.1; 2C421; CE12824; WBGene00020073; WP:CE12824
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R52.8 Aff_R52.8 P W All gene names: math-36; R52.8; 2C404; CE12838; WBGene00020079; WP:CE12838
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

T03F1.9 Aff_T03F1.9 P W All gene names: hcp-4; T03F1.9; 1E432; CE13112; NM_058843; WBGene00001832; WP:CE13112 WormBase description: The hcp-4 gene encodes a centromere protein (CENP)-C homolog, holocentric protein (HCP)-4.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

T04B8.3 Aff_T04B8.3 P W All gene names: T04B8.3; 2A919; CE39176; WBGene00020205; WP:CE39176
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

T05B4.2 Aff_T05B4.2 P W All gene names: nhr-57; T05B4.2; 5E613; CE13195; NM_071752; WBGene00003647; WP:CE13195 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

T05D4.2 Aff_T05D4.2 P W All gene names: T05D4.2; 3O650; CE16342; WBGene00011475; WP:CE16342
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

T06E6.2 Aff_T06E6.2 P W All gene names: cyb-2; cyb-3; T06E6.2; T06E6.2a.1; T06E6.2a.2; 5P877; CE13315; CE27776; NM_074424; WBGene00000868; WP:CE13315; WP:CE27776 WormBase description: cyb-3 encodes a member of the cyclin B family that is required for embryonic viability, and may be involved with sister chromatid segregation.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig2 cyclin-genes,                              
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, Fig2b shared gemlines, Reinke et al 2004, wt vs                              
                                              glp-4 enriched genes, Reinke et al 2004, oogenesis                                 
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, wt herm vs wt male                              
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T07C4.1 Aff_T07C4.1 P W All gene names: T07C4.1; T07C4.1.1; T07C4.1.2; 3L446; CE00638; WBGene00011559; WP:CE00638 WormBase description: T07C4.1 is orthologous to the human gene URIDINE MONOPHOSPHATE SYNTHETASE (OROTATE PHOSPHORIBOSYL TRANSFERASE AND OROTIDINE-5'-DECARBOXYLASE) (UMPS; OMIM:258900), which when mutated leads to disease. WormBase CDS description: UMP synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

T07C4.10 Aff_T07C4.10 P W All gene names: T07C4.10; 3L413; CE38103; NM_066880; WBGene00011562; WP:CE38103
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

T07E3.4 Aff_T07E3.4 P W All gene names: T07E3.4; T07E3.4a.1; T07E3.4a.2; T07E3.4b.1; T07E3.4b.2; 3H989; CE01385; CE32717; WBGene00020315; WP:CE01385; WP:CE32717 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

T08A9.1 Aff_T08A9.1 P W All gene names: T08A9.1; CE04916; WBGene00020334; WP:CE04916; XH957 WormBase description: T08A9.1 is orthologous to the human gene LIKELY ORTHOLOG OF MOUSE COILED COIL FORMING PROTEIN 1 (RB1CC1; OMIM:606837), which when mutated leads to disease. WormBase CDS description: keratin
T08D10.1 Aff_T08D10.1 P W All gene names: tag-295; T08D10.1; CE03642; WBGene00011614; WP:CE03642; XM564 WormBase description: DNA binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T08E11.6 Aff_T08E11.6 P W All gene names: fbxb-10; T08E11.6; 2C104; CE19573; WBGene00020362; WP:CE19573 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

T09B9.4 Aff_T09B9.4 P W All gene names: T09B9.4; T09B9.4.1; T09B9.4.2; CE01652; WBGene00011645; WP:CE01652; XK390 WormBase description: T09B9.4 is orthologous to the human gene PUTATIVE CYTOSKELETAL PROTEIN (D10S170; OMIM:601985), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T11F9.11 Aff_T11F9.11 P W All gene names: dhs-19; T11F9.11; 5L970; CE06423; NM_073514; WBGene00000982; WP:CE06423 WormBase description: dhs-19 encodes a short-chain dehydrogenase predicted to be mitochondrial. WormBase CDS description: 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

T13H2.4 Aff_T13H2.4 P W All gene names: pqn-65; T13H2.4; CE30179; CE30180; NM_171672; NM_171673; WBGene00004148; WP:CE30179; WP:CE30180; XF230 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

T13H2.5 Aff_T13H2.3 P W All gene names: T13H2.5; CE31236; CE38222; WBGene00020496; WP:CE31236; WP:CE38222; XF222
T14F9.2 Aff_T14F9.2 P W All gene names: T14F9.2; CE07498; WBGene00020508; WP:CE07498; XC853
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T15B7.5 Aff_T15B7.5 P W All gene names: col-141; T15B7.5; 5H311; CE13656; NM_072334; WBGene00000714; WP:CE13656 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T18D3.1 Aff_T18D3.1 P W All gene names: T18D3.1; CE03662; WBGene00011820; WP:CE03662; XN75
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T19C3.5 Aff_T19C3.5 P W All gene names: T19C3.5; 3B242; CE29347; WBGene00020563; WP:CE29347
T20B5.1 Aff_T20B5.1 P W All gene names: apa-2; apt-4; T20B5.1; T20B5.1.1; T20B5.1.2; CE28680; NM_077171; WBGene00000161; WP:CE28680; XJ961 WormBase description: The apt-4 gene encodes an adaptin: specifically, it encodes an ortholog of the alpha subunit of adaptor protein complex 2 (AP-2). WormBase CDS description: alpha-adaptin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T20D4.15 Aff_T20D4.15 P W All gene names: T20D4.15; 5D868; CE13806; WBGene00020620; WP:CE13806
T26H2.1 Aff_T26H2.1 P W All gene names: fbxb-1; T26H2.1; 5T711; CE16487; WBGene00012063; WP:CE16487 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
T26H2.2 Aff_T26H2.2 P W All gene names: fbxb-115; T26H2.2; 5T708; CE16488; WBGene00012064; WP:CE16488 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T26H2.7 Aff_T26H2.7 P W All gene names: T26H2.7; 5T697; CE16492; WBGene00012068; WP:CE16492
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

W02D3.9 Aff_W02D3.9 P W All gene names: let-76; unc-37; W02D3.9; W02D3.9.1; W02D3.9.2; W02D3.9.3; 1H320; CE14434; ESG; NM_059531; WBGene00006773; WP:CE14434 WormBase description: The unc-37 gene encodes a transducin-like WD-repeat protein homologous to Drosophila GROUCHO that genetically interacts with components of the transcriptional Mediator complex. WormBase CDS description: transducin-like enhancer protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

W02H5.8 Aff_W02H5_1932.J P W All gene names: W02H5.8; W02H5.A; W02H5_1932.A; 5D126; CE21240; WBGene00020962; WP:CE21240
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

W04A8.3 Aff_W04A8.3 P W All gene names: W04A8.3; 1O436; CE16537; WBGene00012238; WP:CE16537
W06D4.5 Aff_T06D10.C P W All gene names: tag-157; W06D4.5; 1J640; CE16547; WBGene00006503; WP:CE16547 WormBase description: PhoX homologous domain, present in p47phox and p40phox.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

W09C2.1 Aff_W09C2.1 P W All gene names: elt-1; W09C2.1; W09C2.1a.1; W09C2.1a.2; 4K383; CE03799; CE39113; NM_069307; WBGene00001249; WP:CE03799; WP:CE39113 WormBase description: The elt-1 gene encodes a GATA transcription factor expressed in the embryonic hypodermis, and is essential for the production of most hypodermal cells. WormBase CDS description: elongation factor ELT
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              fem3 enriched genes                                                                

Y102A5C.22 Aff_Y102A5C.22 P W All gene names: srx-54; Y102A5C.22; 5R455; CE36333; NM_074892; WBGene00005945; WP:CE36333 WormBase description: 7TM receptor, srx family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y113G7B.23 Aff_Y113G7B.L P W All gene names: psa-1; Y113G7B.23; 5U710; CE25208; NM_075505; WBGene00004203; WP:CE25208 WormBase description: psa-1 encodes an ortholog of SWI3, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; psa-1 is probably required during mitosis of the T cells for asymmetric cell division, and in addition, is required for embryonic and larval development, as well as normal levels of fertility; psa-1 exhibits strong genetic interactions with lin-35/Rb, as psa-1 larval lethality and sterility at 20 degrees C are greatly enhanced in lin-35;psa-1 double mutants. WormBase CDS description: SWI/SNF protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y13C8A.2 Aff_Y13C8_223.C P W All gene names: Y13C8A.2; CE21363; WBGene00021189; WP:CE21363; XR499
Y39G10AR.10 Aff_Y39G10A_246.A P W All gene names: Y39G10AR.10; Y39G10AR.10.1; Y39G10AR.10.2; 1C869; CE26989; WBGene00021468; WP:CE26989
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

Y47D7A.1 Aff_Y47D7A_138.A P W All gene names: skr-7; Y47D7A.1; Y47D7A.1.1; Y47D7A.1.2; 5E901; CE22054; NM_071820; WBGene00004813; WP:CE22054 WormBase description: The skr-7 gene encodes a homolog of Skp1 in S. cerevisiae that is required for posterior body morphogenesis, embryonic and larval development, and cell proliferation.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y49E10.6 Aff_Y49E10.A P W All gene names: his-72; Y49E10.6; Y49E10.6.1; Y49E10.6.2; Y49E10.A; 3N456; CE22223; NM_067207; WBGene00001946; WP:CE22223 WormBase description: his-72 encodes an H3 histone required for embryonic viability. WormBase CDS description: Core histone H2A/H2B/H3/H4
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

Y50D4B.2 Aff_Y50D4B_10.A P W All gene names: Y50D4B.2; 5B579; CE24401; WBGene00021741; WP:CE24401
Y55B1BR.3 Aff_Y55B1B_119.B P W All gene names: Y55B1BR.3; 3B49; CE24463; WBGene00021913; WP:CE24463
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

Y55F3BR.8 Aff_Y55F3A_747.F P W All gene names: Y55F3BR.8; 4B602; CE31657; CE37730; WBGene00021945; WP:CE31657; WP:CE37730
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, Romagnolo et al 2002  Fig3b Unkown,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y56A3A.29 Aff_Y56A3A.CC P W All gene names: ung-1; Y56A3A.29; 3N62; CE22594; CE28139; WBGene00013241; WP:CE22594; WP:CE28139
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen                                              

Y69H2.7 Aff_Y69H2.K P W All gene names: Y69H2.7; Y69H2.K; 5T175; CE37450; WBGene00013482; WP:CE37450
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

Y71G12B.15 Aff_Y71G12A_187.A P W All gene names: ubc-3; Y71G12B.15; Y71G12B.15.1; Y71G12B.15.2; 1C173; CE38573; NM_058481; WBGene00006702; WP:CE38573 WormBase description: ubc-3 encodes an E2 ubiquitin-conjugating enzyme orthologous to Saccharomyces cerevisiae and human CDC34 (OMIM:603731) which are involved in regulating protein stability during G1 and G2 cell cycle phase transitions; by homology, UBC-3 is likely required for covalent attachment of ubiquitin to select target proteins to facilitate their degradation; however, as loss of UBC-3 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of UBC-3 in C. elegans development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 TransientList,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

Y73C8B.4 Aff_Y73C8B.D P W All gene names: lag-2; let-461; sel-3; Y73C8B.4; Y73C8B.D; 5D667; CE22970; NM_071476; WBGene00002246; WP:CE22970 WormBase description: lag-2 encodes a transmembrane protein of the Delta/Serrate/Lag-2 (DSL) family that functions as a signaling ligand for the GLP-1 and LIN-12 Notch-like receptors; LAG-2 is required for larval viability and for cell fate decisions involving the germline (meiosis vs mitosis), the somatic gonad, and the early embryo; in addition, LAG-2 functions redundantly with the transmembrane APX-1 and secreted DSL-1 ligands to regulate lateral signaling during vulval development; LAG-2 is expressed in the distal tip cell of the somatic gonad, the ventral nerve cord, the descendants of ABalap and MSap in the developing embryo, and in all six vulval precursor cells (VPCs) during the early L3 stage, with later expression in the VPCs generally restricted to P6.p; lag-2 expression in the vulval cells is regulated by the LET-23/EGF receptor signaling pathway and the SUR-2 component of the Mediator transcription complex. WormBase CDS description: intercellular signal protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y75B8A.25 Aff_Y75B8A.EE P W All gene names: Y75B8A.25; 3N371; CE23036; WBGene00013558; WP:CE23036
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC204.2 Aff_ZC204.2 P W All gene names: ZC204.2; 2B955; CE15086; WBGene00022554; WP:CE15086 WormBase description: homeobox protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

ZC373.1 Aff_ZC373.1 P W All gene names: ZC373.1; ZC373.1.1; ZC373.1.2; CE31670; WBGene00013866; WP:CE31670; XK675 WormBase description: The ZC373.1 gene encodes an ortholog of the human gene CYSTATHIONINE-BETA-SYNTHASE (CBS), which when mutated leads to homocystinuria (OMIM:236200). WormBase CDS description: cystathionine beta-synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

ZK1058.6 Aff_ZK1058.6 P W All gene names: nit-1; ZK1058.6; 3F11; CE01106; WBGene00014206; WP:CE01106 WormBase description: Nitrilase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

ZK1193.5 Aff_ZK1193.5 P W All gene names: ZK1193.5; CE33746; CE33747; CE33748; WBGene00022861; WP:CE33746; WP:CE33747; WP:CE33748; XB46 WormBase description: ZK1193.5 encodes, by alternative splicing, three proteins with a COMPASS (CMP) domain and two homeodomains; the CMP domain is found in the N-terminus of SATB-class CUT homeodomain proteins (e.g. human SATB1), and in Drosophila DEFECTIVE PROVENTRICULUS (DVE), to which ZK1193.5 may be orthologous; both DVE and ZK1193.5 encode two homeodomains which are highly divergent, but homologous between species, and probably derived by intragenic duplication; ZK1193.5 is required for a normally high rate of growth, fluid excretion, and larval viability in in mass RNAi assays.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

ZK1236.3 Aff_ZK1236.3 P W All gene names: phi-57; ZK1236.3; 3J511; CE00532; WBGene00023405; WP:CE00532
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK484.8 Aff_ZK484.8 P W All gene names: ZK484.8; ZK484.8.1; ZK484.8.2; 1G674; CE15351; WBGene00022754; WP:CE15351
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

ZK546.4 Aff_ZK546.4 P W All gene names: ZK546.4; 2F229; CE02918; WBGene00022761; WP:CE02918
ZK662.4 Aff_ZK662.4 P W All gene names: lin-15B; ZK662.4; CE15381; WBGene00023497; WP:CE15381; XQ349 WormBase description: LIN-15B protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK688.6 Aff_ZK688.6 P W All gene names: tag-282; ZK688.6; ZK688.6a.1; ZK688.6a.2; 3I996; CE00464; CE29648; WBGene00022801; WP:CE00464; WP:CE29648
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Proteases, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK909.5 Aff_ZK909.5 P W All gene names: fbxb-70; ZK909.5; 1P546; CE15481; WBGene00014149; WP:CE15481
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol