Baugh et al 2003, class E, 3553 genes

Gene list file name:Baugh2003_classE.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, class E  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

6R55.1 Aff_6R55.1 P W All gene names: 6R55.1; CE19652; CE26787; WBGene00007068; WP:CE19652; WP:CE26787; XS331
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

AC3.3 Aff_AC3.3 P W All gene names: abu-1; pqn-1; AC3.3; 5K858; CE05133; NM_073266; WBGene00000024; WP:CE05133 WormBase description: abu-1 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-1 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-1 may help protect the organism from damage by improperly folded nascent protein.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  Fig6A Resveratrol,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

AC3.7 Aff_AC3.7 P W All gene names: dod-15; ugt-1; AC3.7; 5K877; CE05137; NM_073270; WBGene00007072; WP:CE05137 WormBase description: UDP-glucuronosyltransferase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Murphy et al 2003  Fig2 Class1                                   
                                              elongate lifespan, ReichertK et al 2005  T1 xenobiotic                             
                                              induced UDP-gl, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, Reinke et al 2004, GO categories, Reinke et al                              
                                              2004, list of genes in cluster B, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

AFF_AC8.J Aff_AC8.J P W
AFF_B0413.D Aff_B0413.D P W
AFF_B0564.10 Aff_B0564.10 P W
AFF_C06G1.3 Aff_C06G1.3 P W
AFF_C09G5.8 Aff_C09G5.8 P W
AFF_C10B5.2 Aff_C10B5.2 P W
AFF_C13B9.1 Aff_C13B9.1 P W
AFF_C23H3.4 Aff_C23H3.4 P W
AFF_C25A1.6 Aff_C25A1.6 P W
AFF_C25D7.10 Aff_C25D7.10 P W
AFF_C25H3.3 Aff_C25H3.3 P W
AFF_C33A11.2 Aff_C33A11.2 P W
AFF_C35D10.1 Aff_C35D10.1 P W
AFF_C45E1.4 Aff_C45E1.4 P W
AFF_C46A5.6 Aff_C46A5.6 P W
AFF_C49A1.8 Aff_C49A1.8 P W
AFF_C50F2.2 Aff_C50F2.2 P W
AFF_E01A2.I Aff_E01A2.I P W
AFF_F07H5.5 Aff_F07H5.5 P W
AFF_F08G12.6 Aff_F08G12.6 P W
AFF_F09E5.4 Aff_F09E5.4 P W
AFF_F10G7.10 Aff_F10G7.10 P W
AFF_F11D11.9 Aff_F11D11.9 P W
AFF_F15A4.1 Aff_F15A4.1 P W
AFF_F17C11.1 Aff_F17C11.1 P W
AFF_F20D12.5 Aff_F20D12.5 P W
AFF_F21D9.6 Aff_F21D9.6 P W
AFF_F21H12.1 Aff_F21H12.1 P W
AFF_F22D6.13 Aff_F22D6.13 P W
AFF_F22E5.15 Aff_F22E5.15 P W
AFF_F23A7.6 Aff_F23A7.6 P W
AFF_F23F12.2 Aff_F23F12.2 P W
AFF_F26F4.8 Aff_F26F4.8 P W
AFF_F28B3.6 Aff_F28B3.6 P W
AFF_F32A5.7 Aff_F32A5.7 P W
AFF_F36H2.2 Aff_F36H2.2 P W
AFF_F36H5.7 Aff_F36H5.7 P W
AFF_F39D8.2 Aff_F39D8.2 P W
AFF_F39E9.3 Aff_F39E9.3 P W
AFF_F40F12.2 Aff_F40F12.2 P W
AFF_F43C11_37.B Aff_F43C11_37.B P W
AFF_F44A2.6 Aff_F44A2.6 P W
AFF_F44B9.8 Aff_F44B9.8 P W
AFF_F45E6.5 Aff_F45E6.5 P W
AFF_F46B6.3 Aff_F46B6.3 P W
AFF_F48A11.6 Aff_F48A11.6 P W
AFF_F49H12.C Aff_F49H12.C P W
AFF_F49H12.D Aff_F49H12.D P W
AFF_F52C12.2 Aff_F52C12.2 P W
AFF_F52G2.2 Aff_F52G2.2 P W
AFF_F53C3.9 Aff_F53C3.9 P W
AFF_F56A11.1 Aff_F56A11.1 P W
AFF_H20H17.1 Aff_H20H17.1 P W
AFF_H24O09.C Aff_H24O09.C P W
AFF_K02B12.5 Aff_K02B12.5 P W
AFF_K07F5.14 Aff_K07F5.14 P W
AFF_K08B12.3 Aff_K08B12.3 P W
AFF_K08F11.6 Aff_K08F11.6 P W
AFF_K09D9.D Aff_K09D9.D P W
AFF_K10C9.2 Aff_K10C9.2 P W
AFF_K11D12.7 Aff_K11D12.7 P W
AFF_M03A1.3 Aff_M03A1.3 P W
AFF_R05F9.12 Aff_R05F9.12 P W
AFF_R06A4.3 Aff_R06A4.3 P W
AFF_R07E5.12 Aff_R07E5.12 P W
AFF_R07G3.4 Aff_R07G3.4 P W
AFF_R11A5.5 Aff_R11A5.5 P W
AFF_R11D1.9 Aff_R11D1.9 P W
AFF_R11G1.2 Aff_R11G1.2 P W
AFF_R144.3 Aff_R144.3 P W
AFF_R52.10 Aff_R52.10 P W
AFF_T01G9.2 Aff_T01G9.2 P W
AFF_T05H4.8 Aff_T05H4.8 P W
AFF_T05H4.9 Aff_T05H4.9 P W
AFF_T08B2.9 Aff_T08B2.9 P W
AFF_T08B6.1 Aff_T08B6.1 P W
AFF_T08G5.7 Aff_T08G5.7 P W
AFF_T13C5.6 Aff_T13C5.6 P W
AFF_T21C12.4 Aff_T21C12.4 P W
AFF_T23H2.6 Aff_T23H2.6 P W
AFF_T27E9.7 Aff_T27E9.7 P W
AFF_T28A11.14 Aff_T28A11.14 P W
AFF_W02A2.E Aff_W02A2.E P W
AFF_W09G12.3 Aff_W09G12.3 P W
AFF_W10G11.19 Aff_W10G11.19 P W
AFF_Y105C5.RR Aff_Y105C5.RR P W
AFF_Y105E8A.H Aff_Y105E8A.H P W
AFF_Y105E8A.L Aff_Y105E8A.L P W
AFF_Y105E8A.P Aff_Y105E8A.P P W
AFF_Y106G6H.10 Aff_Y106G6H.10 P W
AFF_Y106G6H.10_G Aff_Y106G6H.10_G P W
AFF_Y113G7A.I Aff_Y113G7A.I P W
AFF_Y116A8A.LL Aff_Y116A8A.LL P W
AFF_Y116F11.ZZ17 Aff_Y116F11.ZZ17 P W
AFF_Y119D3_465.L Aff_Y119D3_465.L P W
AFF_Y13C8_223.B Aff_Y13C8_223.B P W
AFF_Y13C8_223.D Aff_Y13C8_223.D P W
AFF_Y17G9B.D Aff_Y17G9B.D P W
AFF_Y25C1A.A Aff_Y25C1A.A P W
AFF_Y2C2_202.A Aff_Y2C2_202.A P W
AFF_Y32F6A.1 Aff_Y32F6A.1 P W
AFF_Y34D9A_150.D Aff_Y34D9A_150.D P W
AFF_Y37D8A.21 Aff_Y37D8A.21 P W
AFF_Y38A10A.B Aff_Y38A10A.B P W
AFF_Y38A10A.C Aff_Y38A10A.C P W
AFF_Y38F2A_6126.E Aff_Y38F2A_6126.E P W
AFF_Y39B6.R Aff_Y39B6.R P W
AFF_Y39G10A_246.I Aff_Y39G10A_246.I P W
AFF_Y40B10A_112.B Aff_Y40B10A_112.B P W
AFF_Y40H7.D Aff_Y40H7.D P W
AFF_Y41D4A_2491.A Aff_Y41D4A_2491.A P W
AFF_Y41E3.5 Aff_Y41E3.5 P W
AFF_Y45F10A.3 Aff_Y45F10A.3 P W
AFF_Y46B2_176.B Aff_Y46B2_176.B P W
AFF_Y47D3A.O Aff_Y47D3A.O P W
AFF_Y49E10.G Aff_Y49E10.G P W
AFF_Y49F6A_1689.C Aff_Y49F6A_1689.C P W
AFF_Y4C6A.D Aff_Y4C6A.D P W
AFF_Y4C6A.J Aff_Y4C6A.J P W
AFF_Y50D7_162.A Aff_Y50D7_162.A P W
AFF_Y52B11C.1 Aff_Y52B11C.1 P W
AFF_Y53F4B.H Aff_Y53F4B.H P W
AFF_Y53G8A_2706.A Aff_Y53G8A_2706.A P W
AFF_Y53G8B_93.E Aff_Y53G8B_93.E P W
AFF_Y54C5B.1 Aff_Y54C5B.1 P W
AFF_Y54E10A_159.C Aff_Y54E10A_159.C P W
AFF_Y55B1B_119.E Aff_Y55B1B_119.E P W
AFF_Y55B1B_119.G Aff_Y55B1B_119.G P W
AFF_Y55F3A_746.B Aff_Y55F3A_746.B P W
AFF_Y56A3A.W Aff_Y56A3A.W P W
AFF_Y59A8A.H Aff_Y59A8A.H P W
AFF_Y59A8A.U Aff_Y59A8A.U P W
AFF_Y63D3A.1 Aff_Y63D3A.1 P W
AFF_Y71A12B.A Aff_Y71A12B.A P W
AFF_Y71F9A_262.A Aff_Y71F9A_262.A P W
AFF_Y71F9A_294.B Aff_Y71F9A_294.B P W
AFF_Y71H2_389.E Aff_Y71H2_389.E P W
AFF_Y73F8A.X Aff_Y73F8A.X P W
AFF_Y75B8A.U Aff_Y75B8A.U P W
AFF_Y77E11A_3443.Q Aff_Y77E11A_3443.Q P W
AFF_Y81G3A.A Aff_Y81G3A.A P W
AFF_ZC395.7 Aff_ZC395.7 P W
AFF_ZK105_3.G Aff_ZK105_3.G P W
AFF_ZK1128.1 Aff_ZK1128.1 P W
AFF_ZK1236.5 Aff_ZK1236.5 P W
AFF_ZK688.7 Aff_ZK688.7 P W
AFF_ZK783.4 Aff_ZK783.4 P W
B0001.6 Aff_B0001.6 P W All gene names: B0001.6; B0001.6.1; B0001.6.2; B0001.6.3; 4M927; CE31863; WBGene00007091; WP:CE31863
B0001.7 Aff_B0001.7 P W All gene names: B0001.7; 4M916; CE05145; WBGene00007092; WP:CE05145
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

B0024.12 Aff_B0024.12 P W All gene names: gna-1; B0024.12; 5K800; CE05156; CeGNA1; NM_073253; WBGene00001646; WP:CE05156 WormBase description: gna-1 encodes one of two C. elegans glucosamine 6-phosphate N-acetyltransferases (GNAs); by homology, GNA-1 is predicted to be required for the formation of UDP-N-acetylglucosamine, a substrate in chitin synthesis, Golgi and cytoplasmic glycosylation, and GPI anchoring; as loss of gna-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GNA-1 in C. elegans development and/or behavior is not yet known. WormBase CDS description: Acetyltransferase (GNAT) family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Wang et al 2003  S4 Climbing, Wang et al 2003                            
                                               S3  genes pass one-way ANOVA, Wang et al 2003  S4                                 
                                              genes pass two-wayANOVA P0                                                         

B0024.14 Aff_B0024.14 P W All gene names: crm-1; B0024.14; B0024.14c.1; B0024.14c.2; 5K804; CE31276; CE31277; CE31278; CE31279; CE36907; NM_171529; NM_171530; NM_171531; NM_171935; WBGene00007103; WP:CE31276; WP:CE31277; WP:CE31278; WP:CE31279; WP:CE36907 WormBase description: pro-collagen domains
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

B0025.1 Aff_B0025.1 P W All gene names: let-512; vps-34; B0025.1; B0025.1b.1; B0025.1b.2; B0025.1c.1; B0025.1c.2; B0025.1d.1; B0025.1d.2; 1G609; CE24759; CE24760; CE37691; CE37738; CE37739; NM_059340; WBGene00006932; WP:CE24759; WP:CE24760; WP:CE37691; WP:CE37738; WP:CE37739 WormBase description: The vps-34 gene encodes an ortholog of the phosphoinositide 3-kinase VPS34 in S. cerevisiae, a protein that regulates multiple steps in endocytosis, and that is required for growth at normal rates during development.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0035.11 Aff_B0035.11 P W All gene names: B0035.11; 4M94; CE05166; WBGene00007110; WP:CE05166 WormBase description: Yeast LEO1 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

B0035.14 Aff_B0035.14 P W All gene names: dnj-1; B0035.14; 4M69; CE05169; NM_069721; WBGene00001019; WP:CE05169 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain. WormBase CDS description: DNAJ protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

B0035.4 Aff_B0035.4 P W All gene names: tag-317; B0035.4; B0035.4.1; B0035.4.2; B0035.4.3; 4M79; 4M81; CE05162; WBGene00007107; WP:CE05162 WormBase description: paramyosin like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

B0035.7 Aff_F54E12.5 P W All gene names: his-47; B0035.7; 4M88; NM_069730; WBGene00001921; his 12 WormBase description: his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. WormBase CDS description: histone H2A
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

B0035.9 Aff_F54E12.3 P W All gene names: his-46; B0035.9; 4M90; NM_069732; WBGene00001920 WormBase description: his-46 encodes an H4 histone. WormBase CDS description: histone H4
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0041.2 Aff_B0041.2 P W All gene names: B0041.2; B0041.2a.1; B0041.2a.2; 1F227; CE27563; CE29526; CE33546; WBGene00015007; WP:CE27563; WP:CE29526; WP:CE33546
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0041.3 Aff_B0041.3 P W All gene names: B0041.3; 1F213; CE07668; WBGene00015008; WP:CE07668
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0041.4 Aff_B0041.4 P W All gene names: rpl-4; B0041.4; B0041.4.1; B0041.4.2; B0041.4.3; 1F214; CE07669; NM_059015; WBGene00004415; WP:CE07669 WormBase description: rpl-4 encodes a large ribosomal subunit L4 protein. WormBase CDS description: ribosomal protein L1
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0041.7 Aff_B0041.7 P W All gene names: slr-8; xnp-1; B0041.7; 1F234; CE17314; NM_059022; WBGene00006961; WP:CE17314 WormBase description: xnp-1 encodes an ATP-dependent DNA helicase of the SNF2 family that is orthologous to human XNP/ATR-X, which is associated with a number of X-linked mental retardation syndromes; in C. elegans, xnp-1 activity is required at high temperatures for embryogenesis, somatic gonad development, fertility, and vulval morphogenesis; in addition, animals doubly mutant for xnp-1 and lin-35/Rb, hpl-2/HP1, or nucleosome remodelling and histone deacetylase (NuRD) complex members such as lin-53 and let-418, display larval arrest with growth cessation but continued cell proliferation; xnp-1 is also required, with lin-35/Rb and hpl-2/HP1, for proper regulation of transgene expression; xnp-1 mRNA, detectable in embryos and the germline by in situ hybridization, is expressed at highest levels in embryos with decreasing levels seen in successive larval stages; xnp-1 transcriptional reporter fusions exhibit strong expression beginning at mid-embryogenesis but fading by embryonic morphogenesis; at hatching, expression is observed in all dividing cells including the P lineage, and at later larval stages expression is observed in the vulval precursor cells. WormBase CDS description: helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

B0205.6 Aff_B0205.6 P W All gene names: B0205.6; 1L315; CE30405; WBGene00015021; WP:CE30405 WormBase description: aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

B0205.7 Aff_B0205.7 P W All gene names: kin-3; B0205.7; B0205.7.1; B0205.7.2; 1L311; CE17321; NM_060410; WBGene00002191; WP:CE17321 WormBase description: kin-3 encodes an ortholog of the catalytic subunit of casein kinase II alpha, which in Drosophila and mammals is required for normal circadian rhythms, and which directly phosphorylates the Drosophila PERIOD protein (which itself regulates circadian rhythms); by analogy, KIN-3 might be expected to help regulate heterochronic functions dependent on such proteins as LIN-42. WormBase CDS description: casein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0205.8 Aff_B0205.8 P W All gene names: B0205.8; 1L306; CE17322; WBGene00015022; WP:CE17322
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0207.12 Aff_B0207.12 P W All gene names: avr-14; gbr-2; B0207.12; 1G544; CE26421; CE30227; CE32092; WBGene00000232; WP:CE26421; WP:CE30227; WP:CE32092 WormBase description: avr-14 encodes an alpha-type subunit of a glutamate-gated chloride channel homologous to human GLRA2, which when mutated leads to hyperekplexia (OMIM:149400); AVR-14 affects sensitivity to the antiparisitic drug, ivermectin, in parallel with avr-15 and glc-1 and in a genetic pathway with unc-9; it functions in the extrapharyngeal nervous system, and is expressed in a subset of neurons in the ring ganglia, ventral cord, and some mechanosensory neurons.
B0213.3 Aff_B0213.3 P W All gene names: nlp-28; B0213.3; 5E463; CE16774; NM_071709; WBGene00003766; WP:CE16774
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

B0213.6 Aff_B0213.6 P W All gene names: nlp-31; B0213.6; 5E459; CE16777; NM_071706; WBGene00003769; WP:CE16777 WormBase description: nlp-31 encodes five predicted neuropeptide-like proteins; in C. elegans, nlp-31 is part of the YGGWamide neuropeptide family that also contains nlp-24, nlp-25, and nlp-27-32; nlp-31 is expressed in the hypodermis, suggesting that the peptides it encodes may have a non-neuronal function; nlp-31 expression is also detected in precomma-stage embryos; as loss of nlp-31 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of the nlp-31-encoded peptides in development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Reinke                            
                                              et al 2004, IVb male soma enriched genes                                           

B0218.1 Aff_B0218.1 P W All gene names: B0218.1; B0218.1a.1; B0218.1a.2; B0218.1a.3; B0218.1a.4; B0218.1a.5; B0218.1b.1; B0218.1b.2; B0218.1b.3; 4I925; CE06684; CE33351; WBGene00015047; WP:CE06684; WP:CE33351 WormBase description: amidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0218.3 Aff_B0218.3 P W All gene names: pmk-1; B0218.3; 4I913; CE06686; NM_068964; WBGene00004055; WP:CE06686 WormBase description: pmk-1 encodes a mitogen-activated protein kinase (MAPK), orthologous to human p38 MAPK (OMIM:600289), that is required for eliciting gonadal programmed cell death in response to Salmonella enterica infection; PMK-1 lies upstream of CED-9, a negative regulator of apoptosis, in the programmed cell death pathway. WormBase CDS description: ser/thr kinases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt herm enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

B0228.6 Aff_B0228.6 P W All gene names: B0228.6; 2I44; CE31283; WBGene00015063; WP:CE31283
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0228.7 Aff_B0228.7 P W All gene names: B0228.7; 2I48; CE34630; WBGene00015064; WP:CE34630
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0238.1 Aff_B0238.1 P W All gene names: B0238.1; 5F718; CE07691; WBGene00015067; WP:CE07691 WormBase description: carboxylesterase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ReichertK et al 2005 T1                                         

B0238.10 Aff_B0238.10 P W All gene names: B0238.10; 5F753; CE07700; WBGene00015074; WP:CE07700 WormBase description: acyltransfersase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster E                               

B0238.11 Aff_B0238.11 P W All gene names: B0238.11; B0238.11.1; B0238.11.2; 5F747; CE07701; WBGene00015075; WP:CE07701
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0250.1 Aff_B0250.1 P W All gene names: rpl-2; B0250.1; B0250.1.1; B0250.1.2; 5U949; CE18478; NM_075539; WBGene00004413; WP:CE18478 WormBase description: rpl-2 encodes a large ribosomal subunit L8 protein. WormBase CDS description: Ribosomal Proteins L2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0250.9 Aff_B0250.9 P W All gene names: B0250.9; 5U950; CE36579; WBGene00007126; WP:CE36579 WormBase description: B0250.9 is orthologous to the human gene 7-DEHYDROCHOLESTEROL REDUCTASE (DHCR7; OMIM:602858), which when mutated leads to disease. WormBase CDS description: sterol reductase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig5 conserved w/ yeast                              

B0252.2 Aff_B0252.2 P W All gene names: asm-1; B0252.2; 2H201; CE30230; NM_063014; WBGene00000211; WP:CE30230 WormBase description: Spingomyelin phosphodiesterase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

B0252.3 Aff_B0252.3 P W All gene names: B0252.3; B0252.3c.1; B0252.3c.2; 2H194; CE30586; CE32095; CE34631; WBGene00015088; WP:CE30586; WP:CE32095; WP:CE34631
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0252.4 Aff_B0252.4 P W All gene names: cyn-10; cyp-10; B0252.4; 2H202; CE02420; CE27567; NM_063015; WBGene00000886; WP:CE02420; WP:CE27567 WormBase description: cyp-10 encodes a divergent cyclophilin isoform that is functional when expressed in E. coli.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0261.2 Aff_B0261.2 P W All gene names: CE-TOR; let-363; B0261.2; 1F831; CE32559; CE32560; CeTor; NM_059148; NM_059151; WBGene00002583; WP:CE32559; WP:CE32560 WormBase description: let-363 encodes, by alternative splicing, two large (>2600-residue) proteins with C-terminal similarity to phosphatidylinositol kinase (PIK); LET-363 proteins are orthologous to S. cerevisiae Tor1p and Tor2p and human FRAP1 (OMIM:601231, mammalian target of FKBP12-rapamycin); LET-363 proteins are required for progression through the L3 stage of larval development and are thought to generally stimulate translation of most or all mRNAs ('global translation'); LET-363 activity is also necessary for normal development and physiology of the intestine; LET-363 proteins are expressed ubiquitously, including a maternal contribution to the early embryo.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

B0272.1 Aff_B0272.1 P W All gene names: tbb-4; B0272.1; CE00850; NM_077184; WBGene00006538; WP:CE00850; XK54 WormBase description: tubulin beta chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Portman et al 2004  T1 newly found ray-genes                              
                                              in25c, Portman et al 2004  T1 25 candidate ray genes,                              
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

B0272.4 Aff_B0272.4 P W All gene names: B0272.4; CE00853; WBGene00007130; WP:CE00853; XK47 WormBase description: enoyl-CoA hydratase/isomerase
B0280.10 Aff_B0280.10 P W All gene names: B0280.10; 3I222; CE29533; WBGene00015105; WP:CE29533
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0280.3 Aff_B0280.3 P W All gene names: B0280.3; B0280.3.1; B0280.3.2; 3I213; CE00733; WBGene00015101; WP:CE00733
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0280.8 Aff_B0280.8 P W All gene names: nhr-10; B0280.8; 3I202; CE00815; NM_066153; WBGene00003609; WP:CE00815 WormBase description: nhr-10 encodes a predicted nuclear hormone receptor diverged from nuclear hormone receptors in other phyla; its mRNA is expressed throughout development with possibly lower expression from the L4 larval to adult stages, and the protein is expressed in neuronal processes. WormBase CDS description: retinoic acid
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0281.5 Aff_B0281.5 P W All gene names: B0281.5; 2C588; CE07716; WBGene00015112; WP:CE07716
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001 Fig1                                             
                                              hermaphrodite-enriched neuro, Jones et al 2001  Non                                
                                              dauer genes P<0.05, Murphy et al 2003  Fig2 Class2                                 
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, intrinsic, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

B0284.3 Aff_B0284.3 P W All gene names: B0284.3; 3F468; CE28525; WBGene00007133; WP:CE28525
B0285.4 Aff_B0285.4 P W All gene names: B0285.4; 3F433; CE00643; WBGene00007137; WP:CE00643
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

B0285.7 Aff_B0285.7 P W All gene names: B0285.7; 3F453; CE00646; WBGene00007139; WP:CE00646 WormBase description: Aminopeptidase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0285.8 Aff_B0285.8 P W All gene names: ckb-1; B0285.8; 3F455; CE33590; NM_065478; WBGene00000511; WP:CE33590 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0285.9 Aff_B0285.9 P W All gene names: ckb-2; B0285.9; 3F459; CE33591; NM_065479; WBGene00000512; WP:CE33591 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b signaling, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, Wang et al 2003  S3                                
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Early                                
                                              genes, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

B0286.4 Aff_B0286.4 P W All gene names: ntl-2; B0286.4; B0286.4a.1; B0286.4a.2; B0286.4c.1; B0286.4c.2; B0286.4c.3; B0286.4d.1; B0286.4d.2; B0286.4d.3; B0286.4d.4; B0286.4d.5; 2E664; CE03864; CE29537; CE29538; CE39662; NM_062371; NM_062372; NM_062373; WBGene00003825; WP:CE03864; WP:CE29537; WP:CE29538; WP:CE39662
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0303.14 Aff_B0303.14 P W All gene names: B0303.14; 3J804; CE00003; WBGene00015132; WP:CE00003 WormBase description: Giant secretory protein I-C
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0303.15 Aff_B0303.15 P W All gene names: B0303.15; 3J807; CE00004; WBGene00015133; WP:CE00004 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Ribosomal protein L11
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

B0303.2 Aff_B0303.2 P W All gene names: B0303.2; 3J775; CE00536; WBGene00015124; WP:CE00536
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

B0303.7 Aff_B0303.7 P W All gene names: B0303.7; 3J787; CE36521; WBGene00015128; WP:CE36521 WormBase description: Neutrophil oxidase factor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

B0303.8 Aff_B0303.8 P W All gene names: sdz-1; B0303.8; 3J788; CE00001; WBGene00015129; WP:CE00001
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown                                

B0304.1 Aff_B0304.1 P W All gene names: hlh-1; B0304.1; 2E811; CE02423; CE30067; CE31766; MyoD1; WBGene00001948; WP:CE02423; WP:CE30067; WP:CE31766 WormBase description: hlh-1 encodes a basic helix-loop-helix (bHLH) transcription factor that is the sole C. elegans member of the myogenic regulatory factor (MRF) subgroup of bHLH proteins; in C. elegans, HLH-1 activity is required during embryonic development for the proper differentiation and function of body wall muscle cells, indicating that unlike its vertebrate counterparts, hlh-1 is not absolutely required for body wall muscle specification; however, ectopic expression of hlh-1 in the embryo is sufficient to convert nearly all embryonic cell types to a muscle-like fate; in regulating body wall muscle cell development in some cell lineages, hlh-1 likely lies downstream of the PAL-1 homeodomain protein that is required for specification of the C and D founder cell fates; HLH-1 is expressed in nuclei and first appears in body wall muscle precursors beginning at the ~80-cell stage of embryogenesis; expression then continues in these cells and their differentiated descendants throughout embryonic, larval, and adult stages of development. WormBase CDS description: helix-loop-helix transcription factor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph, Roy                            
                                              et al 2002  S2 positivecontrol L1 muscle, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

B0310.2 Aff_B0310.2 P W All gene names: B0310.2; B0310.2.1; B0310.2.2; CE03875; WBGene00015138; WP:CE03875; XB120 WormBase description: C2H2-type zinc fingers
B0310.4 Aff_B0310.4 P W All gene names: B0310.4; CE03877; WBGene00015140; WP:CE03877; XB132 WormBase description: repetitive proline-rich cell wall protein
B0310.5 Aff_B0310.5 P W All gene names: ugt-46; B0310.5; CE03878; WBGene00015141; WP:CE03878; XB146 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

B0334.4 Aff_B0334.4 P W All gene names: B0334.4; 2L787; CE02936; WBGene00007144; WP:CE02936 WormBase description: Yeast hypothetical protein L8167.12 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

B0334.5 Aff_B0334.5 P W All gene names: B0334.5; 2L789; CE30122; WBGene00007145; WP:CE30122 WormBase description: phytoene synthase precursor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0334.8 Aff_B0334.8 P W All gene names: age-1; daf-23; B0334.8; 2L810; CE23506; NM_064061; WBGene00000090; WP:CE23506 WormBase description: age-1 encodes the C. elegans ortholog of the phosphoinositide 3-kinase (PI3K) p110 catalytic subunit; AGE-1, supplied maternally and embryonically, is a central component of the C. elegans insulin-like signaling pathway, lying downstream of the DAF-2/insulin receptor and upstream of both the PDK-1 and AKT-1/AKT-2 kinases and the DAF-16 forkhead type transcription factor, whose negative regulation is the key output of the insulin signaling pathway; in accordance with its role in insulin signaling, AGE-1 activity is required for regulation of metabolism, life span, dauer formation, stress resistance, fertility, and embryonic development; although the age-1 expression pattern has not yet been reported, ectopic expression studies indicate that pan-neuronal age-1 expression is sufficient to rescue life-span defects, while neuronal, intestinal, or muscle expression can partially rescue dauer formation, and neuronal or muscle expression can rescue metabolic defects. WormBase CDS description: phosphatidylinositol 3-kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated                                                                  

B0336.1 Aff_B0336.1 P W All gene names: wrm-1; B0336.1; B0336.1.1; B0336.1.2; 3G815; CE26743; NM_065835; WBGene00006943; WP:CE26743
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0336.10 Aff_B0336.10 P W All gene names: rpl-23; B0336.10; B0336.10.1; B0336.10.2; 3G794; CE00778; NM_065830; WBGene00004435; WP:CE00778 WormBase description: rpl-23 encodes a large ribosomal subunit L23 protein.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0336.2 Aff_B0336.2 P W All gene names: arf-1.2; arf-1; B0336.2; B0336.2.1; B0336.2.2; 3G805; ARF/1; CE00696; NM_065834; WBGene00000182; WP:CE00696 WormBase description: arf-1 encodes an ADP-ribosylation factor homolog required in vivo for embryonic development, fertility, locomotion, vulval development, and cuticular synthesis; ARF proteins are N-myristoylated GTPases that regulate membrane traffic and the actin cytoskeleton, and that activate both phospholipase D1 (PLD1) and phosphatidylinositol 4-phosphate 5-kinase. WormBase CDS description: ARF
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

B0336.3 Aff_B0336.3 P W All gene names: B0336.3; 3G803; CE29542; WBGene00015143; WP:CE29542
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

B0336.4 Aff_B0336.4 P W All gene names: rgs-5; B0336.4; 3G791; CE32098; NM_065828; WBGene00004348; WBGene00015144; WP:CE32098 WormBase description: rgs-5 encodes a regulator of G protein signaling; by homology, RGS-5 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling; loss of rgs-5 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-5 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability; an rgs-5 transcriptional reporter is expressed in head neurons in larvae and adults.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

B0336.6 Aff_B0336.6 P W All gene names: B0336.6; B0336.6.1; B0336.6.2; 3G780; CE29545; WBGene00015146; WP:CE29545 WormBase description: B0336.6 encodes an Abl interactor ortholog, with an SH3 domain, required for embryonic development; mammalian Abl interactors are associated with synaptosomes, growth cone particles, and macropinocytic vesicles, and may regulate Rac-dependent cytoskeletal reorganization and Abl kinase activity; B0336.6's orthologs include human SSH3BP1 (ABI1; OMIM:603050, mutated in acute myeloid leukemia), ABI-2 (OMIM:606442), and NESH (OMIM:606363); B0336.6 binds UNC-53 in two-hybrid screens.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

B0361.2 Aff_F56C9.4 P W All gene names: B0361.2; 3I397; CE33549; CE38480; WBGene00015156; WP:CE33549; WP:CE38480
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0361.3 Aff_B0361.3 P W All gene names: B0361.3; B0361.3.1; B0361.3.2; 3I373; CE34242; WBGene00015157; WP:CE34242
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

B0361.6 Aff_B0361.6 P W All gene names: B0361.6; 3I366; CE00835; WBGene00015160; WP:CE00835
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S5 genes                              
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

B0379.3 Aff_B0379.3 P W All gene names: mut-16; pqn-3; B0379.3; 1K661; CE30474; CE30475; NM_060259; NM_060260; WBGene00003508; WP:CE30474; WP:CE30475 WormBase description: mut-16 encodes a glutamine/asparagine (Q/N)-rich domain-containing protein that lacks obvious homologs outside of other nematode species; MUT-16 activity is required for RNA-mediated interference (RNAi), transgene silencing in germ-line and somatic tissues, and for maintaining low levels of transposon mobilization; MUT-16 is thus predicted to play a role in chromatin organizataion and/or regulation of gene expression.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0391.9 Aff_B0391.9 P W All gene names: B0391.9; 5Q70; CE17337; WBGene00007164; WP:CE17337
B0393.1 Aff_B0393.1 P W All gene names: rps-0; B0393.1; B0393.1.1; B0393.1.2; 3F842; CE00854; NM_065577; WBGene00004469; WP:CE00854 WormBase description: rps-0 encodes a small ribosomal subunit SA protein that appears to function as both a ribosomal component and a laminin receptor; by homology, RPS-0 is predicted to play roles in protein biosynthesis and cell adhesion; in C. elegans, RPS-0 activity is required for embryonic and germline development, vulval morphogenesis, and the overall health of the animal. WormBase CDS description: 40S ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

B0395.3 Aff_B0395.3 P W All gene names: B0395.3; B0395.3.1; B0395.3.2; CE02944; WBGene00007175; WP:CE02944; XQ650 WormBase description: B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT; OMIM:118490), which when mutated leads to disease. WormBase CDS description: choline O-acetyltransferase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

B0403.4 Aff_B0403.4 P W All gene names: tag-320; B0403.4; CE03880; WBGene00015168; WP:CE03880; XH686 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: protein disulfide-isomerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

B0410.2 Aff_B0410.2 P W All gene names: vang-1; B0410.2; CE06708; CE27572; NM_076099; NM_076100; WBGene00015171; WP:CE06708; WP:CE27572; XD507
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0412.3 Aff_B0412.3 P W All gene names: B0412.3; B0412.3.1; B0412.3.2; 3B425; CE03884; WBGene00015173; WP:CE03884
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

B0412.4 Aff_B0412.4 P W All gene names: rps-29; B0412.4; B0412.4.1; B0412.4.2; 3B413; CE26849; NM_064862; WBGene00004498; WP:CE26849 WormBase description: rps-29 encodes a small ribosomal subunit S29 protein; by homology, RPS-29 is predicted to function in protein biosynthesis; in C. elegans, RPS-29 activity is broadly required for embryonic and germline development, normal body coloration and morphology, normal postembryonic growth rates, and the overall health of the animal. WormBase CDS description: 40S ribosomal protein S29
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0414.5 Aff_B0414.5 P W All gene names: cpb-3; B0414.5; 1G366; CE07735; NM_059279; WBGene00000772; WP:CE07735 WormBase description: The cbp-3 gene encodes a cytoplasmic polyadenylation element binding (CPEB) protein homolog. WormBase CDS description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

B0414.7 Aff_B0414.7 P W All gene names: mtk-1; B0414.7; 1G372; CE07737; CE27573; NM_059281; NM_059282; WBGene00003472; WP:CE07737; WP:CE27573 WormBase description: protein kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

B0414.8 Aff_B0414.8 P W All gene names: B0414.8; 1G380; CE30413; CE36910; WBGene00015176; WP:CE30413; WP:CE36910
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0416.4 Aff_B0416.4 P W All gene names: B0416.4; CE02434; WBGene00015180; WP:CE02434; XJ899
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0416.5 Aff_B0416.5 P W All gene names: B0416.5; B0416.5a.1; B0416.5a.2; CE02435; CE29548; WBGene00015181; WP:CE02435; WP:CE29548; XJ888
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

B0416.6 Aff_B0416.6 P W All gene names: gly-13; B0416.6; CE26434; NM_077165; WBGene00001638; WP:CE26434; XJ912 WormBase description: alpha-1,3-mannosyl-glycoprotein beta-1,2-n-acetyglucosaminyltransferase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0432.10 Aff_B0432.10 P W All gene names: B0432.10; 2A574; CE07748; WBGene00015191; WP:CE07748
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0432.2 Aff_B0432.2 P W All gene names: B0432.2; 2A581; CE07740; WBGene00015184; WP:CE07740
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

B0432.3 Aff_B0432.3 P W All gene names: B0432.3; 2A579; CE07741; WBGene00015185; WP:CE07741
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0432.4 Aff_B0432.4 P W All gene names: B0432.4; 2A577; CE32102; WBGene00015186; WP:CE32102 WormBase description: mitochrondrial 2-oxoglutarate/malate carrier protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

B0454.9 Aff_B0454.9 P W All gene names: B0454.9; 2D344; CE07759; WBGene00015200; WP:CE07759
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

B0457.1 Aff_B0457.1 P W All gene names: lat-1; B0457.1; 2J197; CE02945; CE32789; CE36086; NM_063493; NM_182149; WBGene00002251; WP:CE02945; WP:CE32789; WP:CE36086 WormBase description: lat-1 encodes a predicted latrophilin that affects embryonic elongation, pharyngeal development, and reproductive organ formation; apically localized in developing epithelia and localized to presynaptic surfaces in neurons.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

B0462.3 Aff_B0462.3 P W All gene names: fbxb-119; B0462.3; 5S797; CE15556; WBGene00007182; WP:CE15556
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 daf-16 Resveratrol                                                     

B0464.2 Aff_B0464.2 P W All gene names: B0464.2; 3K585; CE20456; WBGene00007184; WP:CE20456 WormBase description: TPR Domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

B0464.5 Aff_B0464.5 P W All gene names: rsk-1; spk-1; srk-1; B0464.5; B0464.5b.1; B0464.5b.2; B0464.5c.1; B0464.5c.2; 3K551; CE20457; CE36373; CE36580; NM_066679; WBGene00004980; WP:CE20457; WP:CE36373; WP:CE36580 WormBase description: spk-1 encodes a serine/threonine kinase orthologous to the highly conserved serine/arginine-rich protein kinases (SRPKs) that phosphorylate SR proteins, essential components of the pre-mRNA splicing machinery; SPK-1, required for embryogenesis and germline development, can directly bind and phosphorylate RSP-3 (CeSF2/ASF), an SR splicing factor homolog; SPK-1 is expressed predominantly in the adult germline; SPK-1 is homologous to human RSK2, which when mutated leads to Coffin-Lowry syndrome (OMIM:303600). WormBase CDS description: Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0464.8 Aff_B0464.7 P W All gene names: tag-342; B0464.8; 3K559; CE36465; WBGene00007187; WP:CE36465
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0491.1 Aff_B0491.1 P W All gene names: B0491.1; 2L639; CE02103; WBGene00007189; WP:CE02103
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

B0491.7 Aff_B0491.7 P W All gene names: B0491.7; 2L641; CE02109; WBGene00007194; WP:CE02109 WormBase description: B0491.7 encodes a putative diphthine synthase orthologous to S. cerevisiae DPH5; DPH5 is an S-adenosylmethionine:EF-2 methyltransferase required for the enzymatic conversion of 3-amino-3-carboxypropyl-histidine to diphthine; DPH5 adds at least the last two of the three methyl groups present in diphthine, and is homologous to bacterial AdoMet:uroporphyrinogen III methyltransferases. WormBase CDS description: diphthine synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

B0495.2 Aff_B0495.2 P W All gene names: B0495.2; 2H991; CE01761; WBGene00015203; WP:CE01761 WormBase description: CDC2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

B0495.5 Aff_B0495.5 P W All gene names: B0495.5; B0495.5.1; B0495.5.2; 2H986; CE29948; WBGene00015204; WP:CE29948
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

B0495.6 Aff_B0495.6 P W All gene names: B0495.6; 2H988; CE01764; WBGene00015205; WP:CE01764
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0495.7 Aff_B0495.7 P W All gene names: B0495.7; B0495.7.1; B0495.7.2; 2H992; CE29550; WBGene00015206; WP:CE29550
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

B0507.1 Aff_B0507.1 P W All gene names: B0507.1; 5J259; CE28815; WBGene00015218; WP:CE28815
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 LateList, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

B0507.3 Aff_B0507.3 P W All gene names: B0507.3; 5J251; CE07762; CE39664; WBGene00015220; WP:CE07762; WP:CE39664
B0511.1 Aff_B0511.1 P W All gene names: fkb-7; B0511.1; 1L245; CE26851; NM_060391; WBGene00001432; WP:CE26851 WormBase description: fkb-7 encodes a peptidylprolyl cis/trans isomerase homologous to mammalian FK506-binding proteins; by homology, FKB-7 could function in a number of different processes including protein folding, signal transduction, and regulation of muscle contraction; however, as loss of fkb-7 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of FKB-7 in C. elegans development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

B0511.10 Aff_B0511.10 P W All gene names: eif-3.E; B0511.10; 1L218; CE17349; NM_060384; WBGene00001228; WP:CE17349 WormBase description: eif-3.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

B0511.12 Aff_B0511.12 P W All gene names: B0511.12; 1L232; CE28877; WBGene00015237; WP:CE28877
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated                                                   

B0511.6 Aff_B0511.6 P W All gene names: B0511.6; B0511.6.1; B0511.6.2; 1L203; CE26853; WBGene00015232; WP:CE26853 WormBase description: helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

B0511.9 Aff_B0511.9 P W All gene names: B0511.9; 1L216; CE17348; CE26854; WBGene00015235; WP:CE17348; WP:CE26854
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

B0513.2 Aff_B0513.2 P W All gene names: B0513.2; 4O649; CE23510; WBGene00007195; WP:CE23510
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen                                              

B0513.3 Aff_B0513.3 P W All gene names: rpl-29; B0513.3; B0513.3.1; B0513.3.2; 4O647; CE15559; NM_070270; WBGene00004443; WP:CE15559 WormBase description: rpl-29 encodes a large ribosomal subunit L29 protein; by homology, RPL-29 is predicted to function in protein biosynthesis; in C. elegans, loss of rpl-29 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities. WormBase CDS description: 60S ribosomal protein L29
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

B0547.1 Aff_B0547.1 P W All gene names: csn-5; B0547.1; B0547.1.1; B0547.1.2; 4G415; CE06722; NM_068440; WBGene00000817; WP:CE06722 WormBase description: csn-5 encodes an ortholog of subunit 5 of the COP9 signalosome complex (CSN5), which in turn is a pan-eukaryotic multiprotein complex that positively regulates E3 ubiquitin ligases, physically interacts with SCF-type E3 ubiquitin ligases, and probably regulates protein degradation; CSN-5 (along with KGB-1 and ZYX-1) physically binds germline RNA helicases (GLH proteins), and csn-5(RNAi) results in sterile worms with small gonads and no oocytes, causing oogenesis to cease, but not affecting the initial assembly of P granules -- a defect essentially identical to that produced by RNAi with a combination of glh-1 and glh-4.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0563.1 Aff_B0563.1 P W All gene names: B0563.1; CE02439; WBGene00015261; WP:CE02439; XJ787
B0563.4 Aff_B0563.3 P W All gene names: tag-132; B0563.4; CE30843; WBGene00006479; WP:CE30843; XJ777
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0563.8 Aff_B0563.8 P W All gene names: B0563.8; CE39467; WBGene00015265; WP:CE39467; XJ788
B0564.1 Aff_B0564.1 P W All gene names: tin-9.2; B0564.1; 4N865; CE20469; CE37950; NM_070119; WBGene00007201; WBGene00044083; WP:CE20469; WP:CE37950 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C01A2.4 Aff_C01A2.4 P W All gene names: C01A2.4; 1N983; CE34247; WBGene00007216; WP:CE34247
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C01B10.5 Aff_C01B10.5 P W All gene names: hil-7; C01B10.5; C01B10.5b.1; C01B10.5b.2; H1.Q; 4H411; CE06736; CE26856; CE26857; CE33357; NM_068626; WBGene00001858; WP:CE06736; WP:CE26856; WP:CE26857; WP:CE33357 WormBase description: hil-7 encodes a histone H1.1 isoform that is required in the germline for chromatin silencing (assayed by silencing of transgenic DNA), for proliferation and differentiation, and for fertility; hil-7(RNAi) phenotypes resemble the Mes phenotype resulting from the desilencing of genes required for somatic differentiation in the germline; HIL-7 is required in both the hermaphrodite and the male germlines, and is ubiquitously expressed in all nuclei (somatic and germline).
C01B12.2 Aff_C01B12.2 P W All gene names: C01B12.2; 2A311; CE39124; WBGene00015285; WP:CE39124
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C01B12.8 Aff_C01B12.8 P W All gene names: C01B12.8; CE07796; NM_061235; WBGene00015291; WP:CE07796
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories                                                                

C01B7.1 Aff_C01B7.1 P W All gene names: C01B7.1; C01B7.1a.1; C01B7.1a.2; 5J271; CE29553; CE30719; WBGene00015274; WP:CE29553; WP:CE30719 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

C01C10.3 Aff_C01C10.3 P W All gene names: acl-12; C01C10.3; CE02449; NM_076859; WBGene00015295; WP:CE02449; XI58
C01F1.1 Aff_C01F1.1 P W All gene names: C01F1.1; 2E595; CE06742; WBGene00015296; WP:CE06742 WormBase description: dna binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C01F1.2 Aff_C01F1.2 P W All gene names: C01F1.2; 2E591; CE06743; WBGene00015297; WP:CE06743 WormBase description: C01F1.2 is orthologous to the human gene SCO (CYTOCHROME OXIDASE DEFICIENT, YEAST) HOMOLOG 1 (SCO1; OMIM:603644), which when mutated leads to early-onset hepatic failure; the C01F1.2 protein is predicted to be mitochondrial with 68% accuracy.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C01F1.3 Aff_C01F1.3 P W All gene names: phi-41; C01F1.3; C01F1.3a.1; C01F1.3a.2; 2E587; CE06744; CE39553; WBGene00015298; WP:CE06744; WP:CE39553
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Metabolism,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C01F4.2 Aff_F57C9.8 P W All gene names: C01F4.2; 1F420; CE30414; CE33358; WBGene00015303; WP:CE30414; WP:CE33358
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C01F6.5 Aff_C01F6.5 P W All gene names: aly-1; ref-1; C01F6.5; 4J873; CE02954; NM_069187; WBGene00000120; WP:CE02954 WormBase description: RNA recognition motif. (aka RRM, RBD, or RNP domain)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, mixed oogenesis soma, Romagnolo et al 2002                             
                                              Fig3b Metabolism, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C01F6.8 Aff_C01F6.8 P W All gene names: icl-1; C01F6.8; 4J860; CE17360; CE30069; ICln; WBGene00002046; WP:CE17360; WP:CE30069 WormBase description: The icl-1 gene encodes, through alternative splicing, two alternative forms (ICL-1A, or 'IClnN1', and ICL-1B, or 'IClnN2'), with distinct electrophysiological properties, of an anion channel homolog. WormBase CDS description: nucleotide-sensitive chloride ion channel
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Reinke et al 2004, fem1 enriched                                 
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Romagnolo et                             
                                              al 2002  Fig3b Transporters, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C01F6.9 Aff_C01F6.9 P W All gene names: C01F6.9; 4J862; CE17361; NX; WBGene00007223; WP:CE17361 WormBase description: The C01F6.9 gene resides in an operon that also contains the genes icl-1 and lpl-1.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C01G10.8 Aff_C01G10.8 P W All gene names: C01G10.8; C01G10.8.1; C01G10.8.2; 5P564; CE07817; WBGene00007235; WP:CE07817
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig5 conserved                            
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C01G10.9 Aff_C01G10.9 P W All gene names: C01G10.9; 5P563; CE07818; WBGene00007236; WP:CE07818 WormBase description: Initiation factor 2 subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4 Early                              
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

C01G12.3 Aff_C01G12.3 P W All gene names: C01G12.3; 2O868; CE15573; WBGene00007244; WP:CE15573
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, wt males vs glp4 male enriched ,                                
                                              Reinke et al 2004, spermatogenesis enriched genes,                                 
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, shared sperm                                                                 

C01G5.6 Aff_C01G5.6 P W All gene names: C01G5.6; 4H289; CE23513; WBGene00015308; WP:CE23513
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                               
                                              S4 Dauer Enriched                                                                  

C01G6.2 Aff_C01G6.2 P W All gene names: C01G6.2; 2J557; CE02958; WBGene00007224; WP:CE02958
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, spermatogenesis enriched genes, Reinke et al                              
                                              2004, wt herm vs wt herm enriched gen, Reinke et al                                
                                              2004, fem3 enriched genes, Reinke et al 2004, IVb male                             
                                              soma enriched genes, Reinke et al 2004, wt vs glp-4                                
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster D, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C01G6.3 Aff_C01G6.3 P W All gene names: C01G6.3; 2J561; CE37474; WBGene00007225; WP:CE37474
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C01G6.4 Aff_C01G6.4 P W All gene names: C01G6.4; 2J562; CE00866; WBGene00007226; WP:CE00866 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C01G6.5 Aff_C01G6.5 P W All gene names: C01G6.5; 2J566; CE00867; WBGene00007227; WP:CE00867 WormBase description: Forkhead-associated (FHA) domain
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, list of                             
                                              genes in cluster E                                                                 

C01G6.7 Aff_C01G6.7 P W All gene names: C01G6.7; 2J583; CE00869; WBGene00007228; WP:CE00869 WormBase description: 4-coumarate-coA ligase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              list of genes in cluster D, Reinke et al 2004, GO                                  
                                              categories, Wang et al 2003  S3  genes pass one-way                                
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

C01G6.8 Aff_C01G6.8 P W All gene names: cam-1; kin-8; C01G6.8; 2J586; CE24774; CE32563; CE39126; WBGene00000289; WP:CE24774; WP:CE32563; WP:CE39126 WormBase description: The cam-1 gene encodes a receptor tyrosine kinase of the immunoglobulin superfamily that is orthologous to human ROR1 (OMIM:602336) and ROR2 (OMIM:602337, mutation of which leads to type B brachydactyly) and is required for locomotion, cell migration, asymmetric cell division, axon outgrowth, and dauer formation; CAM-1 is broadly expressed during embryogenesis and larval development with expression first appearing at the 200-cell stage of embryogenesis.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C01G8.2 Aff_C01G8.2 P W All gene names: cln-3.2; C01G8.2; C01G8.2.1; C01G8.2.2; 1F844; CE07802; NM_059155; WBGene00000540; WP:CE07802 WormBase description: cln-3.2 encodes a predicted transmembrane protein that comprises one of three C. elegans homologs of human CLN3 (OMIM:607042, mutations are associated with Batten disease (also known as juvenile neuronal ceroid lipofuscinosis), a recessively inherited childhood neurodegenerative lysosomal storage disease); loss of cln-3.2 activity via large-scale RNAi screens has been reported to result in either no defects or in embryonic lethality.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C01G8.9 Aff_C01G8.7 P W All gene names: C01G8.9; 1F870; CE30415; CE33359; WBGene00015314; WP:CE30415; WP:CE33359
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C01H6.7 Aff_C01H6.7 P W All gene names: tag-298; C01H6.7; 1H803; CE05190; WBGene00007256; WP:CE05190 WormBase description: Bromodomain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C01H6.9 Aff_C01H6.9 P W All gene names: C01H6.9; 1H806; CE07824; WBGene00007258; WP:CE07824 WormBase description: C01H6.9 encodes a homolog of haploid germ cell-specific nuclear protein kinase (haspin) that specifically binds GOA-1 in yeast two-hybrid assays; C01H6.9 is expressed in PHB sensory neurons and PVT interneurons in the tail, several unidentified neurons in the head (with projections to the nose and nerve ring), and intestinal cells, with mainly nuclear localization; C01H6.9 has no obvious function or phenotype in RNAi assays, either alone or with inactivation of a close paralog (F22H10.5). WormBase CDS description: Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, Romagnolo et al 2002  Fig3b Unkown                                     

C02B10.4 Aff_C02B10.4 P W All gene names: C02B10.4; C02B10.4.1; C02B10.4.2; 4F857; CE16801; WBGene00015329; WP:CE16801
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C02B8.2 Aff_C02B8.2 P W All gene names: C02B8.2; CE03891; WBGene00015321; WP:CE03891; XI761
C02B8.6 Aff_C02B8.6 P W All gene names: C02B8.6; CE29656; WBGene00015324; WP:CE29656; XI752 WormBase description: DNA repair protein RAD16 (yeast, weak)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C02D5.2 Aff_C02D5.2 P W All gene names: C02D5.2; 3J647; CE00034; CE39554; WBGene00015336; WP:CE00034; WP:CE39554
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C02E11.1 Aff_C02E11.1 P W All gene names: C02E11.1; C02E11.1a.1; C02E11.1a.2; 5B508; CE28528; CE32040; WBGene00015344; WP:CE28528; WP:CE32040
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit, Wang et al 2003  S7 SAGE                             
                                              genes in the dataset                                                               

C02F12.1 Aff_C02F12.1 P W All gene names: tsp-17; C02F12.1; CE35213; NM_076233; WBGene00006643; WP:CE35213; XE303 WormBase description: transpanin
C02F12.4 Aff_C02F12.4 P W All gene names: tag-52; C02F12.4; CE03899; WBGene00006431; WP:CE03899; XE294 WormBase description: guanine-nucleotide releasing factor of the CDC24 family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C02F12.7 Aff_C02F12.7 P W All gene names: tag-278; C02F12.7; CE03901; WBGene00015356; WP:CE03901; XE304
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C02F12.8 Aff_C02F12.8 P W All gene names: C02F12.8; CE03902; WBGene00015357; WP:CE03902; XE310
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C02F5.1 Aff_C02F5.1 P W All gene names: knl-1; C02F5.1; 3J343; CE02450; NM_066410; WBGene00002231; WP:CE02450 WormBase description: knl-1 encodes a novel acidic protein with a coiled-coil region at its C-terminus; KNL-1 is an essential kinetochore component that is required for proper spindle elongation and chromosome separation, and in the kinetochore assembly pathway, plays a key role in linking the initiation of kinetochore formation with the construction of a functional microtubule-binding interface; in the assembly pathway, KNL-1 functions downstream of the DNA-proximal kinetochore components CeCENP-A/HCP-3 and CeCENP-B/HCP-4 and upstream of the outer kinetochore components HIM-10/Nuf2p, NDC-80/HEC1, CeBUB-1, HCP-1, and CeCLASP2/CLS-2; in expression studies in the one-cell embryo, KNL-1 localizes to kinetochores throughout mitosis.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C02F5.12 Aff_C02F5.9 P W All gene names: C02F5.12; 3J330; CE39127; WBGene00015352; WP:CE39127
C02F5.6 Aff_C02F5.6 P W All gene names: C02F5.6; CE00042; CE30417; NM_171212; NM_171213; WBGene00015349; WP:CE00042; WP:CE30417
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C03A7.4 Aff_C03A7.4 P W All gene names: pqn-5; C03A7.4; 5F633; CE07862; NM_071981; WBGene00004099; WP:CE07862 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  T1 pqn genes                                   

C03B1.12 Aff_C03B1.12 P W All gene names: lmp-1; C03B1.12; C03B1.12.1; C03B1.12.2; CE03912; NM_076671; WBGene00003053; WP:CE03912; XG996 WormBase description: lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus; localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C03B1.7 Aff_C03B1.7 P W All gene names: C03B1.7; CE03909; WBGene00015378; WP:CE03909; XG963
C03B8.4 Aff_C03B8.4 P W All gene names: lin-13; lin-51; C03B8.4; 3I790; CE30419; NM_066277; WBGene00003002; WP:CE30419 WormBase description: Gene Function : lin-13 encodes a large (2248-residue) nuclear protein with multiple zinc fingers of the C2H2 class and a LXCXE retinoblastoma protein-binding motif, that is required for survival through larval development and for negative regulation of vulval fates during postembryonic development. WormBase CDS description: Zinc finger
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C03C10.1 Aff_C03C10.1 P W All gene names: kin-19; C03C10.1; C03C10.1.1; C03C10.1.2; C03C10.1.3; 3F174; CE00872; NM_065417; WBGene00002202; WP:CE00872 WormBase description: kin-19 encodes a serine/threonine kinase orthologous to human casein kinase I, alpha 1 (CSNK1A1, OMIM:600505); KIN-19 appears to be a component of the non-canonical Wnt signaling pathway that regulates endoderm formation in the early embryo; kin-19(RNAi) and mom-2(RNAi) enhance apr-1(RNAi), but not RNAi of each other. WormBase CDS description: casein Kinase I
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C03D6.3 Aff_C03D6.3 P W All gene names: cel-1; C03D6.3; 1K243; CE05197; CE32300; NM_060168; WBGene00000466; WP:CE05197; WP:CE32300 WormBase description: cel-1 encodes a mRNA capping enzyme, with a N-terminal region with RNA triphosphatase activity and a C-terminal region containing motifs found in yeast and vaccinia virus capping enzyme guanylytransferases; cel-1 is required for embryonic viability, body morphology, and vulval development.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, intrinsic, Reinke et al 2004, wt vs glp-4                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt male                              
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

C03D6.4 Aff_C03D6.4 P W All gene names: npp-14; C03D6.4; 1K238; CE05198; CeNup214; NM_060167; WBGene00003800; WP:CE05198 WormBase description: npp-14 is orthologous to the human gene NUCLEOPORIN, 214-KD (NUP214; OMIM:114350), which encodes part of the nucleopore complex mediating nucleocytoplasmic transport; NUP214, as a fusion gene with DEK (OMIM:125264), is found in a subset of acute myeloid leukemia. WormBase CDS description: nucleoporin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C03D6.8 Aff_C03D6.8 P W All gene names: rpl-24.2; C03D6.8; C03D6.8.1; C03D6.8.2; 1K245; CE05202; NM_060171; WBGene00004437; WP:CE05202 WormBase description: rpl-24.2 encodes a large ribosomal subunit L24 protein paralog; its orthologs include ribosomal protein L30 isologs from mammals and 'Ribosomal Like Protein 24' (Rlp24p) from S. cerevisiae; it therefore appears to actually represent an ancient paralogy between two varieties of eukaryotic L24 protein. WormBase CDS description: ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Wang et al 2003  S5 genes common to feeding                               
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C03H12.1 Aff_ZK662.1 P W All gene names: C03H12.1; CE35380; WBGene00007284; WP:CE35380; XQ313
C03H5.2 Aff_C03H5.2 P W All gene names: C03H5.2; 2A681; CE32110; WBGene00015404; WP:CE32110
C03H5.7 Aff_C03H5.7 P W All gene names: C03H5.7; 2A673; CE07900; WBGene00015409; WP:CE07900
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C04A2.1 Aff_C04A2.1 P W All gene names: C04A2.1; 2H139; CE36523; WBGene00015410; WP:CE36523
                                              
Member of lists (Publications lists):
                                              Shen et al 2005  T1 hif-1 depend                                  
                                              hypoxia, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C04E7.2 Aff_C04E7.2 P W All gene names: C04E7.2; CE28816; WBGene00015429; WP:CE28816; XA975
C04F12.10 Aff_C04F12.10 P W All gene names: Ce-face-1; fce-1; C04F12.10; 1K288; CE19683; NM_060181; WBGene00001405; WP:CE19683 WormBase description: fce-1 encodes an ortholog of 'farnesylated-proteins converting enzyme 1' (FACE-1), and thus probably enables post-translational processing of proteins (such as LET-60/RAS) carrying a C-terminal CaaX motif; FCE-1 protein probably accounts for the EDTA-sensitive, tosylphenylalanylchloromethane-insensitive component of CaaX-proteolytic activity in membrane extracts from C. elegans, and FCE-1 can cleave a farnesylated peptide in vitro; the S. cerevisiae homolog of FCE-1 (Ste24p) cleaves the precursor of yeast a-factor mating pheromone after its farnesylated cysteine residue, and transgenic FCE-1 rescues a mating defect of mutant yeast lacking both the Ste24p and the Rce1p CaaX-proteases. WormBase CDS description: Zinc-binding metalloprotease domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C04F12.4 Aff_C04F12.4 P W All gene names: rpl-14; C04F12.4; C04F12.4.1; C04F12.4.2; 1K265; CE19677; NM_060175; WBGene00004426; WP:CE19677 WormBase description: rpl-14 encodes a large ribosomal subunit L14 protein.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig3b Protein Synthesis,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C04F12.9 Aff_C04F12.9 P W All gene names: C04F12.9; 1K286; CE19682; WBGene00007303; WP:CE19682 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Lund et al 2002  Fig3D Oocyte-en,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, mixed oogenesis soma, Reinke et al 2004, GO                                  
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C04F5.8 Aff_C04F5.8 P W All gene names: C04F5.8; 5F590; CE19672; WBGene00015450; WP:CE19672
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C04F5.9 Aff_C04F5.9 P W All gene names: C04F5.9; 5F594; CE19673; WBGene00015451; WP:CE19673
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C04F6.3 Aff_C04F6.3 P W All gene names: cht-1; C04F6.3; C04F6.3.1; C04F6.3.2; CE03923; CHT1; NM_076187; WBGene00000503; WP:CE03923; XE16 WormBase description: cht-1 encodes a chitinase orthologous to human chitinase-1 (OMIM:600031, mutations are associated with chitotriosidase deficiency); CHT-1 is predicted to function as an extracellular O-glycosyl hydrolase that hydrolyzes the glycosidic bond between two or more carbohydrates; in C. elegans, CHT-1 may play a role in embryogenesis, and may also be required for cuticle degradation during molting and degradation of chitin-containing pathogens as part of a host defense mechanism. WormBase CDS description: glycosyl hydrolase (family 18)
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Jones et al 2001  Non dauer genes P<0.05,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C04F6.4 Aff_C04F6.4 P W All gene names: unc-78; C04F6.4; C04F6.4b.1; C04F6.4b.2; CE03924; CE33554; NM_076189; WBGene00006810; WP:CE03924; WP:CE33554; XE28 WormBase description: The unc-78 gene encodes a homolog of actin-interacting protein 1 (AIP1) that regulates the ordered assembly of actin and cofilin in myofibrils.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Wang et al 2003  S5 genes common to feeding                              
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C04F6.5 Aff_C04F6.5 P W All gene names: dhs-27; C04F6.5; CE37079; NM_076190; WBGene00000990; WP:CE37079; XE32 WormBase description: dhs-27 encodes a short-chain dehydrogenase predicted to be mitochondrial. WormBase CDS description: alcohol/ribitol dehydrogenase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C04G2.6 Aff_C04G2.6 P W All gene names: dis-3; tag-128; C04G2.6; 4K869; CE05214; NM_069434; WBGene00001001; WP:CE05214 WormBase description: S.pombe mitotic control protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C05A9.2 Aff_C05A9.2 P W All gene names: C05A9.2; CE05222; WBGene00007317; WP:CE05222; XL460
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

C05B5.4 Aff_C05B5.4 P W All gene names: C05B5.4; 3L81; CE00880; WBGene00007321; WP:CE00880
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05B5.8 Aff_C05B5.6 P W All gene names: C05B5.8; 3L96; CE33967; WBGene00007324; WP:CE33967
C05C10.2 Aff_C05C10.2 P W All gene names: C05C10.2; C05C10.2b.1; C05C10.2b.2; 2K219; CE01466; CE27795; WBGene00007329; WP:CE01466; WP:CE27795 WormBase description: NAM7 protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C05C8.2 Aff_C05C8.2 P W All gene names: C05C8.2; 5H713; CE07920; WBGene00015461; WP:CE07920
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C05C8.3 Aff_C05C8.3 P W All gene names: dao-1; fkb-3; C05C8.3; 5H707; CE07921; NM_072434; WBGene00001428; WP:CE07921 WormBase description: fkb-3 encodes a peptidylprolyl cis/trans isomerase homologous to mammalian FK506 immunosuppressant-binding protein 9; FKB-3 expression is positively regulated by signaling through the DAF-2 insulin receptor-like pathway and the activity of the DAF-16 fork-head transcription factor suggesting that FKB-3 could play a role in metabolism and longevity; however, as loss of FKB-3 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of FKB-3 in C. elegans development and/or behavior is not yet known; FKB-3 contains a predicted endoplasmic reticulum (ER) retention sequence and is thus proposed to localize to the ER. WormBase CDS description: FKBP-binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C05C8.4 Aff_C05C8.4 P W All gene names: gei-6; C05C8.4; 5H708; CE07922; NM_072435; WBGene00001563; WP:CE07922
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C05C8.5 Aff_C05C8.5 P W All gene names: C05C8.5; 5H714; CE07923; WBGene00015462; WP:CE07923
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C05C8.6 Aff_C05C8.6 P W All gene names: C05C8.6; 5H716; CE07924; WBGene00015463; WP:CE07924
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C05D10.1 Aff_C05D10.1 P W All gene names: C05D10.1; C05D10.1a.1; C05D10.1a.2; C05D10.1c.1; C05D10.1c.2; C05D10.1c.3; C05D10.1c.4; 3H173; CE24783; CE30420; CE37698; WBGene00015477; WP:CE24783; WP:CE30420; WP:CE37698
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D10.3 Aff_C05D10.3 P W All gene names: C05D10.3; 3H174; CE29170; WBGene00015479; WP:CE29170
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C05D11.12 Aff_C05D11.12 P W All gene names: let-721; C05D11.12; C05D11.12.1; C05D11.12.2; 3H534; CE29662; NM_066014; WBGene00002855; WP:CE29662 WormBase description: The let-721 gene encodes an ortholog of the human gene SIMILAR TO ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE (ETFDH), which when mutated leads to glutaricaciduria type IIC (OMIM:231675). WormBase CDS description: YAAS
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Oxidation,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C05D11.13 Aff_C05D11.13 P W All gene names: C05D11.13; 3H532; CE03930; WBGene00015488; WP:CE03930
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D11.2 Aff_C05D11.2 P W All gene names: tag-171; vps-16; C05D11.2; C05D11.2.1; C05D11.2.2; 3H525; CE24785; WBGene00006516; WP:CE24785
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Zhang et al 2002, T1 mec-3 dependent                            
                                              genes                                                                              

C05D11.5 Aff_C05D11.5 P W All gene names: C05D11.5; 3H496; CE01135; WBGene00015483; WP:CE01135
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, mixed sperm                               
                                              soma, Reinke et al 2004, fem3 enriched genes,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C05D11.7 Aff_C05D11.7 P W All gene names: C05D11.7; C05D11.7a.1; C05D11.7a.2; 3H506; CE29663; CE30480; WBGene00015484; WP:CE29663; WP:CE30480
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C05D11.9 Aff_C05D11.9 P W All gene names: C05D11.9; 3H518; CE24787; WBGene00015486; WP:CE24787
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Romagnolo et                             
                                              al 2002  Fig3b Unkown, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

C05D12.4 Aff_C05D12.4 P W All gene names: C05D12.4; 2L721; CE02972; WBGene00007341; WP:CE02972
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C05D12.5 Aff_C05D12.5 P W All gene names: C05D12.5; 2L723; CE02973; WBGene00007342; WP:CE02973
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D2.10 Aff_C05D2.6 P W All gene names: C05D2.10; C05D2.10a.1; C05D2.10a.2; 3G688; CE26861; CE29560; WBGene00015470; WP:CE26861; WP:CE29560
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C05D9.3 Aff_C05D9.3 P W All gene names: C05D9.3; CE35381; WBGene00015472; WP:CE35381; XB733
C05D9.5 Aff_C05D9.5 P W All gene names: ife-4; C05D9.5; CE07931; NM_075809; WBGene00002062; WP:CE07931; XB723 WormBase description: The ife-4 gene encodes a member of the Initiation Factor 4E (eIF4E) family. WormBase CDS description: initiation factor 4E (EIF-4E)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C05D9.7 Aff_C05D9.7 P W All gene names: C05D9.7; CE07933; WBGene00015474; WP:CE07933; XB736
C05E11.1 Aff_C05E11.1 P W All gene names: C05E11.1; CE29561; WBGene00015492; WP:CE29561; XF209
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

C05E11.3 Aff_C05E11.3 P W All gene names: C05E11.3; CE33029; WBGene00015494; WP:CE33029; XF199
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C05E4.1 Aff_C05E4.1 P W All gene names: pes-21; C05E4.1; 5B243; CE07935; NM_070917; WBGene00005643; WP:CE07935 WormBase description: srp-2 encodes an ovalbumin-like serpin (ov-serpin) member of the serine protease inhibitor superfamily that is orthologous to human NEUROSERPIN (OMIM:602445, mutated in familial encephalopathy with neuroserpin inclusion bodies); SRP-2 is predicted to function as a suicide substrate that inhibits the proteolytic activity of serine proteases, and in vitro, recombinant SRP-2 is able to inhibit granzyme B activity; however, as loss of srp-2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of SRP-2 in C. elegans development and/or behavior is not yet known; srp-2 expression is detected in hypodermal cells, particularly in the lateral seam cells. WormBase CDS description: serine protease inhibitor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Wang et al 2003  S6 removed genes of                             
                                              contamination                                                                      

C05E4.9 Aff_H24O09.A P W All gene names: gei-7; C05E4.9; C05E4.9a.1; C05E4.9a.2; C05E4.9a.3; C05E4.9b.1; C05E4.9b.2; 5B204; CE23521; CE32565; NM_070905; WBGene00001564; WP:CE23521; WP:CE32565 WormBase description: gei-7 encodes a predicted isocitrate lyase/malate synthase, an enzyme known to function in the glyoxylate cycle; GEI-7 was identified in a screen for proteins that interact with GEX-3, a homolog of human HEM-2 which is required for embryonic development; GEI-7 is required for embryonic morphogenesis and appears to act downstream of DAF-16 to influence lifespan.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Murphy et al 2003  Fig2 Class1 elongate                                  
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

C05G5.2 Aff_C05G5.2 P W All gene names: C05G5.2; CE05225; WBGene00007348; WP:CE05225; XP367
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C05G5.3 Aff_C05G5.3 P W All gene names: C05G5.3; CE30853; WBGene00007349; WP:CE30853; XP370
C05G5.4 Aff_C05G5.4 P W All gene names: C05G5.4; CE05227; WBGene00007350; WP:CE05227; XP373 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: succinyl-CoA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C06A1.1 Aff_C06A1.1 P W All gene names: cdc-48.1; phi-31; C06A1.1; 2K850; CE02114; NM_063872; WBGene00007352; WP:CE02114 WormBase description: transitional endoplasmic reticulum ATPase homolog 1 (P97 protein)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, GO categories,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C06A1.5 Aff_C06A1.5 P W All gene names: C06A1.5; 2K871; CE02117; WBGene00007355; WP:CE02117 WormBase description: DNA directed RNA polymerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C06A5.11 Aff_C06A5.3 P W All gene names: sir-2.4; C06A5.11; 1G567; CE27656; NM_059332; WBGene00004803; WP:CE27656
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C06A5.2 Aff_C06A5.2 P W All gene names: C06A5.2; 1G583; CE07949; WBGene00015500; WP:CE07949
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, shared sperm                                                    

C06A5.5 Aff_C06A5.5 P W All gene names: C06A5.5; 1G558; CE07952; WBGene00015503; WP:CE07952 WormBase description: RNA-binding protein
C06A6.2 Aff_C06A6.1 P W All gene names: C06A6.2; 4I617; CE31152; CE31153; WBGene00015507; WP:CE31152; WP:CE31153
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C06A6.3 Aff_C06A6.3 P W All gene names: C06A6.3; 4I599; CE03941; WBGene00015508; WP:CE03941
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C06A6.5 Aff_C06A6.5 P W All gene names: C06A6.5; 4I598; CE27661; WBGene00015510; WP:CE27661
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C06A8.3 Aff_C06A8.3 P W All gene names: C06A8.3; 2I81; CE02454; WBGene00015514; WP:CE02454 WormBase description: 17k antigen (O. volvulus)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Zhang et al 2002, T1                                
                                              mec-3 dependent genes                                                              

C06A8.5 Aff_C06A8.5 P W All gene names: C06A8.5; 2I73; CE02456; WBGene00015515; WP:CE02456
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

C06B3.4 Aff_C06B3.4 P W All gene names: dod-8; stdh-1; C06B3.4; 5O389; CE07961; NM_074048; WBGene00007363; WP:CE07961 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: estradiol 17 beta-dehydrogenase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C06B8.7 Aff_C06B8.7 P W All gene names: C06B8.7; 5P989; CE30854; WBGene00007372; WP:CE30854 WormBase description: Human M130 antigen like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Unkown, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

C06C3.1 Aff_C06C3.1 P W All gene names: mel-11; C06C3.1; 2J657; CE20486; CE32566; CE32567; CE36682; NM_063593; WBGene00003196; WP:CE20486; WP:CE32566; WP:CE32567; WP:CE36682 WormBase description: ankyrin-like repeats
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C06E1.1 Aff_C06E1.1 P W All gene names: C06E1.1; 3J695; CE00054; WBGene00015518; WP:CE00054
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C06E1.10 Aff_C06E1.10 P W All gene names: rha-2; C06E1.10; 3J700; CE29563; WBGene00015525; WP:CE29563 WormBase description: The C06E1.10 gene encodes a DEAH helicase orthologous to the Drosophila KURZ, the human KIAA1517, and the S. cerevisiae ECM16 proteins. WormBase CDS description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C06E2.5 Aff_C06E2.5 P W All gene names: C06E2.5; C06E2.5.1; C06E2.5.2; CE30595; WBGene00015529; WP:CE30595; XJ476
C06E7.1 Aff_C06E7.1 P W All gene names: C06E7.1; 4G615; CE03957; CE32569; CE33515; CE37186; WBGene00015538; WP:CE03957; WP:CE32569; WP:CE33515; WP:CE37186 WormBase description: S-adenosylmethionine synthetase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                 
                                              Early genes, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

C06E7.4 Aff_C06E7.4 P W All gene names: C06E7.4; 4G616; CE29026; WBGene00015541; WP:CE29026
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C06G1.4 Aff_C06G1.4 P W All gene names: ain-1; C06G1.4; C06G1.4.1; C06G1.4.2; CE03967; WBGene00015547; WP:CE03967; XR231
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C06G3.10 Aff_C06G3.10 P W All gene names: cgo-2; cogc-2; C06G3.10; 4H802; CE28817; CELDLC; NM_068691; WBGene00000585; WP:CE28817; cog2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C06G3.11 Aff_C06G3.11 P W All gene names: tin-9.1; C06G3.11; C06G3.11b.1; C06G3.11b.2; 4H808; CE07987; CE33518; WBGene00006572; WP:CE07987; WP:CE33518; tim9a; tim9b WormBase description: tin-9 encodes a member of the Tim10/DDP family of zinc finger proteins, a family of proteins typically involved in mitochondrial protein import, and localized to the mitochondrial intermembrane space.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C06G3.5 Aff_C06G3.5 P W All gene names: C06G3.5; C06G3.5b.1; C06G3.5b.2; 4H791; CE07981; CE26867; WBGene00015551; WP:CE07981; WP:CE26867 WormBase description: C06G3.5 is orthologous to human ADENOSINE DEAMINASE (ADA; OMIM:102700), which when mutated leads to severe combined immunodeficiency.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C06G3.6 Aff_C06G3.6 P W All gene names: C06G3.6; 4H783; CE07982; WBGene00015552; WP:CE07982 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C06G3.9 Aff_C06G3.9 P W All gene names: C06G3.9; C06G3.9.1; C06G3.9.2; 4H798; CE07985; WBGene00015555; WP:CE07985
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen                                                                  

C06G4.2 Aff_C06G4.2 P W All gene names: clp-1; C06G4.2; C06G4.2a.1; C06G4.2a.2; C06G4.2b.1; C06G4.2b.2; C06G4.2b.3; 3J75; CE00517; CE30486; CE37743; CE37744; NM_066339; NM_066340; NM_171201; NM_171886; WBGene00000542; WP:CE00517; WP:CE30486; WP:CE37743; WP:CE37744 WormBase description: clp-1 encodes a calpain homolog that has significant identity to mammalian calpains over its whole length and that contains motifs typical of calpains, including a thiol (cysteine) protease active site and a Ca[2+]-binding domain; CLP-1 is required, in parallel with TRA-3 but in series with ASP-3 and ASP-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C06G8.1 Aff_C06G8.1 P W All gene names: C06G8.1; 4L544; CE05229; WBGene00007384; WP:CE05229
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C07A12.3 Aff_C07A12.3 P W All gene names: nhr-35; C07A12.3; CE30855; CE38483; NM_076378; WBGene00003628; WP:CE30855; WP:CE38483; XF155 WormBase description: zinc finger protein
C07A12.4 Aff_C07A12.4 P W All gene names: pdi-2; C07A12.4; C07A12.4a.1; C07A12.4a.2; CE03972; CE31878; NM_076377; NM_182439; WBGene00003963; WP:CE03972; WP:CE31878; XF145 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Link et al 2003  T2 Abeta repressed,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C, Roy et                              
                                              al 2002  S3 muscle genes, ViswanathanM et al 2005  S2                              
                                              UPR genes, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C07A12.7 Aff_C07A12.7 P W All gene names: C07A12.7; C07A12.7a.1; C07A12.7a.2; C07A12.7c.1; C07A12.7c.2; CE25764; CE27055; CE33557; WBGene00015561; WP:CE25764; WP:CE27055; WP:CE33557; XF138
C07A9.2 Aff_C07A9.2 P W All gene names: C07A9.2; C07A9.2.1; C07A9.2.2; 3J784; 3K784; CE00499; WBGene00007400; WP:CE00499 WormBase description: G10 protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories                                                                         

C07A9.6 Aff_C07A9.6 P W All gene names: ugt-60; C07A9.6; C07A9.6.1; C07A9.6.2; 3K766; CE33970; WBGene00007402; WP:CE33970 WormBase description: UDP-glucuronosyltransferase
C07B5.5 Aff_C07B5.5 P W All gene names: nuc-1; C07B5.5; CE00895; NM_077203; WBGene00003828; WP:CE00895; XK159 WormBase description: The nuc-1 gene encodes a DNase II homolog similar to mammalian and Drosophila DNaseII enzymes and is required for DNA degradation during apoptosis as well as for degradation of dietary DNA during normal feeding; during apoptosis, NUC-1 functions in apoptotic cells at an intermediate stage of DNA degradation, after the killing step, but prior to cell-corpse engulfment.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , McCarroll et al 2004                                    
                                              SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C07D10.5 Aff_C07D10.5 P W All gene names: C07D10.5; 2H673; CE36628; WBGene00015569; WP:CE36628
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, herm soma enriched genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C07E3.1 Aff_C07E3.1 P W All gene names: C07E3.1; 2K638; CE02118; CE23526; WBGene00007412; WP:CE02118; WP:CE23526
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C07E3.6 Aff_C07E3.6 P W All gene names: C07E3.6; 2K660; CE35825; WBGene00007417; WP:CE35825
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C07G1.5 Aff_C07G1.5 P W All gene names: hgrs-1; pqn-9; C07G1.5; 4I966; CE32574; NM_068974; WBGene00004101; WP:CE32574 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C07G2.3 Aff_C07G2.3 P W All gene names: cct-5; C07G2.3; C07G2.3b.1; C07G2.3b.2; C07G2.3b.3; C07G2.3b.4; C07G2.3b.5; C07G2.3b.6; C07G2.3b.7; 3F590; CE02985; CE29569; NM_065514; WBGene00000380; WP:CE02985; WP:CE29569 WormBase description: A homolog of the mouse chaperonin Ccte that affects protein folding; it is expressed at all life stages.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C07G3.9 Aff_C07G3.9 P W All gene names: ugt-64; C07G3.9; 5D982; CE08000; WBGene00015577; WP:CE08000 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, GO                               
                                              categories                                                                         

C07H4.2 Aff_C07H4.2 P W All gene names: clh-5; C07H4.2; C07H4.2.1; C07H4.2.2; 2J386; CE27360; NM_063539; WBGene00000532; WP:CE27360 WormBase description: The clh-5 gene encodes a chloride channel, whose human homologs include CLC1 and CLCN5; the latter homolog is imvolved in receptor-mediated endocytosis. WormBase CDS description: chloride channel protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

C07H6.1 Aff_C07H6.1 P W All gene names: lig-4; C07H6.1; 3I613; CE34522; NM_066252; WBGene00002986; WP:CE34522
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

C07H6.2 Aff_C07H6.2 P W All gene names: C07H6.2; 3I609; CE00756; WBGene00015579; WP:CE00756
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C07H6.4 Aff_C07H6.4 P W All gene names: C07H6.4; 3I591; CE00755; WBGene00015581; WP:CE00755 WormBase description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C07H6.5 Aff_C07H6.5 P W All gene names: cgh-1; C07H6.5; C07H6.5.1; C07H6.5.2; 3I586; CE00839; NM_066245; WBGene00000479; WP:CE00839 WormBase description: The ortholog of a RNA helicase ste13/ME31B/RCK/p54 that is required for oocyte and sperm function and the prevention of physiological germline-associated apoptosis; it is expressed in the early embryo and germline and localizes to P granules. WormBase CDS description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Murphy et al 2003  Fig2 Class2 shorten                                    
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              F, Reinke et al 2004, fem1 enriched genes, Reinke et al                            
                                              2004, Fig2b shared gemlines, Reinke et al 2004, list of                            
                                              genes in cluster order, Reinke et al 2004, oogenesis                               
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, wt males vs glp4 male                                    
                                              enriched , Reinke et al 2004, wt herm vs wt male                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C08A9.6 Aff_C08A9.6 P W All gene names: C08A9.6; CE06788; WBGene00015586; WP:CE06788; XR708
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C08A9.7 Aff_C08A9.7 P W All gene names: sdz-2; C08A9.7; CE06789; WBGene00015587; WP:CE06789; XR714
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C08B11.2 Aff_C08B11.2 P W All gene names: hda-2; C08B11.2; 2I312; CE01472; NM_063277; WBGene00001835; WP:CE01472 WormBase description: transcriptional regulatory protein (RPD3)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

C08B11.3 Aff_C08B11.3 P W All gene names: C08B11.3; 2I314; CE01473; WBGene00007433; WP:CE01473 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2 daf-16                            
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C08B11.6 Aff_C08B11.6 P W All gene names: C08B11.6; C08B11.6.1; C08B11.6.2; CE30856; WBGene00007434; WP:CE30856 WormBase description: actin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C08B11.7 Aff_C08B11.7 P W All gene names: ubh-4; C08B11.7; 2I328; CE36913; NM_063283; WBGene00006724; WP:CE36913 WormBase description: thiolesterase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

C08B11.8 Aff_C08B11.8 P W All gene names: C08B11.8; 2I333; CE01478; WBGene00007435; WP:CE01478
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S4 Early genes,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

C08B11.9 Aff_C08B11.9 P W All gene names: C08B11.9; CE01479; WBGene00007436; WP:CE01479
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C08B6.7 Aff_C08B6.7 P W All gene names: C08B6.7; 5K612; CE05244; WBGene00007428; WP:CE05244 WormBase description: 59 protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

C08F1.3 Aff_C08F1.3 P W All gene names: fbxb-13; C08F1.3; 2C79; CE08018; WBGene00015607; WP:CE08018 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
C08F1.6 Aff_C08F1.6 P W All gene names: C08F1.6; 2C78; CE08021; WBGene00015610; WP:CE08021
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C08F1.8 Aff_C08F1.8 P W All gene names: C08F1.8; 2C92; CE08023; WBGene00015611; WP:CE08023 WormBase description: reverse transcriptase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C08F8.1 Aff_C08F8.1 P W All gene names: C08F8.1; 4L915; CE05248; WBGene00007443; WP:CE05248
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C08F8.2 Aff_C08F8.2 P W All gene names: C08F8.2; C08F8.2b.1; C08F8.2b.2; 4L917; CE05249; CE19689; WBGene00007444; WP:CE05249; WP:CE19689 WormBase description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories                                                                         

C08F8.4 Aff_C08F8.4 P W All gene names: C08F8.4; 4L922; CE05251; WBGene00007446; WP:CE05251
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

C08F8.5 Aff_C08F8.5 P W All gene names: fbxb-9; C08F8.5; 4L924; CE05252; WBGene00007447; WP:CE05252 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

C08F8.8 Aff_C08F8.8 P W All gene names: nhr-67; C08F8.8; 4L939; CE18491; NM_069693; WBGene00003657; WP:CE18491 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C08H9.2 Aff_C08H9.2 P W All gene names: C08H9.2; 2K178; CE23530; WBGene00007463; WP:CE23530 WormBase description: high-density lipoprotein-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C08H9.3 Aff_C08H9.3 P W All gene names: C08H9.3; 2K174; CE36914; CE37608; WBGene00007464; WP:CE36914; WP:CE37608 WormBase description: glucosyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

C09B8.4 Aff_C09B8.4 P W All gene names: C09B8.4; CE30242; WBGene00015623; WP:CE30242; XG638
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C09B8.5 Aff_C09B8.5 P W All gene names: C09B8.5; CE02465; WBGene00015624; WP:CE02465; XG640
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Romagnolo                             
                                              et al 2002  Fig3b Unkown, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated                                                                  

C09B8.7 Aff_C09B8.7 P W All gene names: pak-1; C09B8.7; C09B8.7a.1; C09B8.7a.2; C09B8.7c.1; C09B8.7c.2; C09B8.7e.1; C09B8.7e.2; C09B8.7e.3; CE06792; CE27670; CE33559; CE33561; CePAK; WBGene00003911; WP:CE06792; WP:CE27670; WP:CE33559; WP:CE33561; XG664 WormBase description: pak-1 is orthologous to the human gene P21-ACTIVATED KINASE 3 (PAK3; OMIM:300142), which when mutated leads to nonsyndromic mental retardation.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4 Early                              
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

C09B9.1 Aff_C09B9.1 P W All gene names: C09B9.1; 4F805; CE06793; WBGene00015626; WP:CE06793
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C09D4.2 Aff_C09D4.2 P W All gene names: C09D4.2; 1G59; CE08031; WBGene00015633; WP:CE08031
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C09D4.5 Aff_C09D4.5 P W All gene names: rpl-19; C09D4.5; C09D4.5.1; C09D4.5.2; C09D4.5.3; 1G54; CE08034; NM_059207; WBGene00004431; WP:CE08034 WormBase description: rpl-19 encodes a large ribosomal subunit L19 protein. WormBase CDS description: 60S ribosomal protein L19
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C09D8.1 Aff_C09D8.1 P W All gene names: ptp-3; ptp-3A; ptp-3B; ypp-1; C09D8.1; 2L301; CE30244; CE30245; CE32793; WBGene00004215; WP:CE30244; WP:CE30245; WP:CE32793; YPP/1 WormBase description: ptp-3 encodes a receptor-like tyrosine phosphatase orthologous to the LAR (Leukocyte Common Antigen Related, OMIM:179590) subfamily of receptor-like tyrosine phosphatases that contain extracellular immunoglobulin-like and fibronectin type III domains and have been implicated in linking cell adhesion to intracellular phosphotyrosine levels; PTP-3 plays a role in gastrulation and epidermal development and functions partly redundantly with the VAB-1 Eph receptor and ephrins VAB-2 and EFN-4 to regulate embryonic morphogenesis; PTP-3 is expressed in many tissues during early embryogenesis, but expression later becomes localized to neuronal processes and epithelial adherens junctions.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C09G4.1 Aff_C09G4.1 P W All gene names: LAG1-1; hyl-1; C09G4.1; C09G4.1.1; C09G4.1.2; 4J307; CE27675; NM_069058; WBGene00002043; WP:CE27675 WormBase description: hyl-1 encodes a predicted transmembrane protein that is related to Saccharomyces cerevisiae LAG1 (longevity assurance gene), a protein preferentially expressed in young yeasts; by homology, HYL-1 is predicted to have several possible functions, including regulation of lipid, particularly ceramide, biosynthesis, regulation of lipid transport, and regulation of protein translocation in the endoplasmic reticulum; in C. elegans, however, neither the precise role of HYL-1 in development and/or behavior nor the hyl-1 expression pattern is yet known.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C09G4.4 Aff_C09G4.4 P W All gene names: C09G4.4; CE03981; WBGene00044001; WP:CE03981
C09G5.2 Aff_C09G5.2 P W All gene names: C09G5.2; 2K992; CE15608; WBGene00007488; WP:CE15608 WormBase description: C09G5.2 encodes an ortholog of S. cerevisiae DPH2/YKL191W and human DPH2L2 (OMIM:603456); C09G5.2 is a putative protein component of diphtamide synthesis; C09G5.2 has no obvious function in mass RNAi assays. WormBase CDS description: Diphthamide biosynthesis protein (diptheria resistance protein)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C                                                                          

C09G5.4 Aff_C09G5.4 P W All gene names: col-39; C09G5.4; 2K995; CE01484; NM_063908; WBGene00000616; WP:CE01484 WormBase description: col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C09H10.2 Aff_C09H10.2 P W All gene names: rpl-41; C09H10.2; C09H10.2.1; C09H10.2.2; C09H10.2.3; 2L388; CE02131; NM_063974; WBGene00004454; WP:CE02131 WormBase description: rpl-41 encodes a large ribosomal subunit L41 protein; by homology, RPL-41 is predicted to function in protein biosynthesis. WormBase CDS description: 60S ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Romagnolo et al 2002  Fig3b Protein Synthesis                                      

C09H6.1 Aff_C09H6.1 P W All gene names: spr-4; C09H6.1; 1I685; CE15609; CE30487; WBGene00005009; WP:CE15609; WP:CE30487 WormBase description: Zinc finger, C2H2 type (11 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C09H6.2 Aff_C09H6.2 P W All gene names: lin-10; C09H6.2; 1I686; CE15610; CE27060; NM_059825; WBGene00002999; WP:CE15610; WP:CE27060 WormBase description: The lin-10 gene encodes a PDZ and PTB domain-containing protein that is homologous to mammalian Munc interacting proteins (Mint1, OMIM:602414) and is required for polarized protein localization; LIN-10 is required for proper localization of the LET-23 EGF receptor to the basolateral membrane of the vulval precursor cells and for proper postsynaptic localization of GLR-1, an AMPA-type glutamate receptor in interneurons; LIN-10 is detected in the cytoplasm, membrane, and at particularly high levels in the Golgi. WormBase CDS description: Phosphotyrosine interaction domain (PTB/PID)., PDZ domain (Also known as DHR or GLGF). (2 domains)
C09H6.3 Aff_C09H6.3 P W All gene names: mau-2; C09H6.3; 1I705; CE15611; NM_059827; WBGene00003136; WBGene00007498; WP:CE15611
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C10A4.3 Aff_C10A4.3 P W All gene names: C10A4.3; CE02471; WBGene00015664; WP:CE02471; XI19
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C10A4.8 Aff_C10A4.8 P W All gene names: C10A4.8; CE35391; WBGene00015669; WP:CE35391; XI30 WormBase description: Zinc finger protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C10B5.1 Aff_C10B5.1 P W All gene names: C10B5.1; 5J63; CE30722; WBGene00015670; WP:CE30722
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

C10C5.3 Aff_C10C5.3 P W All gene names: C10C5.3; 4K139; CE03011; WBGene00007507; WP:CE03011 WormBase description: aminoacylase-1
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C10C5.5 Aff_C10C5.5 P W All gene names: C10C5.5; 4K147; CE36099; WBGene00007509; WP:CE36099 WormBase description: aminoacylase-1
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, GO categories, Reinke et                              
                                              al 2004, IVb male soma enriched genes, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C10C6.1 Aff_C10C6.1 P W All gene names: kin-4; C10C6.1; 4M211; CE39132; NM_069760; WBGene00002192; WP:CE39132 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S7 SAGE genes in the dataset                                                 

C10C6.3 Aff_C10C6.3 P W All gene names: C10C6.3; 4M226; CE35392; WBGene00007512; WP:CE35392
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes                                                          

C10E2.4 Aff_C10E2.4 P W All gene names: C10E2.4; CE08063; WBGene00015674; WP:CE08063; XR360
C10F3.4 Aff_C10F3.4 P W All gene names: C10F3.4; 5G449; CE30723; CE37609; WBGene00015678; WP:CE30723; WP:CE37609
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S3  genes pass                                
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

C10F3.5 Aff_C10F3.5 P W All gene names: pcm-1; C10F3.5; 5G442; CE08070; NM_072150; WBGene00003954; WP:CE08070 WormBase description: L-isoaspartyl/D-aspartyl methyltransferase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C10G11.5 Aff_C10G11.5 P W All gene names: pnk-1; C10G11.5; C10G11.5c.1; C10G11.5c.2; 1G873; CE29080; CE30488; CE33269; NM_059414; NM_170878; NM_170879; WBGene00004068; WP:CE29080; WP:CE30488; WP:CE33269
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, Reinke et al 2004, herm soma enriched genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C10G11.7 Aff_C10G11.7 P W All gene names: C10G11.7; C10G11.7.1; C10G11.7.2; C10G11.7.3; 1G865; CE08086; WBGene00015687; WP:CE08086
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

C10G8.6 Aff_C10G8.6 P W All gene names: ceh-34; C10G8.6; 5F794; CE20496; NM_072018; WBGene00000455; WP:CE20496 WormBase description: ceh-34 encodes a homeodomain protein, homologous to human SIX2 (OMIM:604994), that is expressed very weakly in the pharynxes of late embryos and early larvae; it has no known function. WormBase CDS description: homeobox protein
C10H11.3 Aff_C10H11.3 P W All gene names: ugt-25; C10H11.3; 1F303; CE08092; WBGene00015692; WP:CE08092 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, mixed sperm soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, fem3                                 
                                              enriched genes                                                                     

C11G6.2 Aff_C11G6.2 P W All gene names: C11G6.2; CE05256; WBGene00007523; WP:CE05256; XQ943 WormBase description: helicase like
C11G6.3 Aff_C11G6.3 P W All gene names: C11G6.3; CE05257; NM_078257; WBGene00007524; WP:CE05257 WormBase description: PHD-finger.
C11G6.4 Aff_C11G6.4 P W All gene names: nhr-28; C11G6.4; C11G6.4a.1; C11G6.4a.2; C11G6.4b.1; C11G6.4b.2; C11G6.4b.3; CE27061; CE37954; WBGene00003624; WP:CE27061; WP:CE37954; XQ973 WormBase description: nuclear hormone receptor, nhr-28
C11H1.4 Aff_C11H1.6 P W All gene names: prx-1; C11H1.4; CE30339; NM_077985; WBGene00004191; WP:CE30339; XO943; pex1 WormBase description: prx-1 encodes a predicted peroxin, a subfamily 2 member of the AAA (ATPases Associated with diverse cellular Activities) family that affects growth in one large-scale RNAi screen; expressed in intestinal cells throughout development. WormBase CDS description: peroxisome biosynthesis protein like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C11H1.7 Aff_C11H1.7 P W All gene names: C11H1.7; CE18492; WBGene00007531; WP:CE18492; XO945
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C11H1.9 Aff_C11H1.5 P W All gene names: C11H1.9; CE05264; CE37316; WBGene00023500; WP:CE05264; WP:CE37316; XO938
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C13B7.5 Aff_Y45G12C.G P W All gene names: str-119; C13B7.5; C13B7.A; 5C904; CE20503; NM_071265; WBGene00006170; WP:CE20503 WormBase description: 7TM chemoreceptor, str family
C13B9.3 Aff_C13B9.3 P W All gene names: phi-30; C13B9.3; 3H712; CE01778; WBGene00015734; WP:CE01778 WormBase description: C13B9.3 encodes a delta subunit of the coatomer (COPI) complex; in mass RNAi assays, C13B9.3 is required for fertility and general health.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C13C12.2 Aff_C13C12.2 P W All gene names: C13C12.2; 5N4; CE08133; WBGene00007552; WP:CE08133
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Unkown,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

C13C4.4 Aff_C13C4.4 P W All gene names: C13C4.4; 5M590; CE20504; WBGene00007548; WP:CE20504
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

C13F10.4 Aff_C13F10.4 P W All gene names: C13F10.4; 5H686; CE08145; WBGene00015743; WP:CE08145
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C13F10.6 Aff_C13F10.6 P W All gene names: C13F10.6; 5H700; CE08147; WBGene00015745; WP:CE08147
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

C13F10.7 Aff_C13F10.7 P W All gene names: C13F10.7; 5H702; CE08148; WBGene00015746; WP:CE08148
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C13G3.3 Aff_C13G3.3 P W All gene names: C13G3.3; C13G3.3a.1; C13G3.3a.2; C13G3.3b.1; C13G3.3b.2; 5L508; CE05279; CE20505; WBGene00007554; WP:CE05279; WP:CE20505 WormBase description: proteion phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C13G5.1 Aff_C13G5.1 P W All gene names: ceh-16; C13G5.1; 3J715; CE37477; NM_066497; WBGene00000439; WP:CE37477 WormBase description: ceh-16 encodes a protein that contains a homeobox domain. WormBase CDS description: Engrailed homeotic protein
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph                                 

C14A11.6 Aff_C14A11.6 P W All gene names: C14A11.6; CE08154; WBGene00015751; WP:CE08154; XD426
C14A4.1 Aff_C14A4.1 P W All gene names: tag-242; C14A4.1; C14A4.1.1; C14A4.1.2; CE02138; WBGene00007555; WP:CE02138
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C14A4.3 Aff_C14A4.3 P W All gene names: C14A4.3; CE32796; NM_063881; WBGene00007556; WP:CE32796
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Romagnolo et al 2002  Fig3b                               
                                              Metabolism, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C14A4.4 Aff_C14A4.4 P W All gene names: crn-3; C14A4.4; 2K881; CE02145; CE32797; NM_063882; NM_182164; WBGene00000796; WP:CE02145; WP:CE32797 WormBase description: crn-3 encodes a cell death-related nuclease, homologous to the 100 kDa polymyositis/scleroderma autoantigen (PM/Scl-100), that is required for normal levels of DNA degradation during apoptosis; PM/Scl-100 is a ribonuclease component of the multiexonuclease exosome complex, which processes or degrades several types of RNAs in yeast; crn-3(RNAi) animals show retarded growth and a low penetrance of embryonic lethality; CRN-3 promotes both DNA degradation and cell corpse engulfment, in a partially redundant pathway that includes CRN-2 but is parallel to CPS-6; CRN-3 is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C14A4.5 Aff_C14A4.5 P W All gene names: crn-5; C14A4.5; 2K883; CE02146; NM_063883; WBGene00000798; WP:CE02146 WormBase description: Prokaryotic ribonuclease PH
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C14A4.6 Aff_C14A4.6 P W All gene names: C14A4.6; C14A4.6.1; C14A4.6.2; 2K884; CE02147; WBGene00007557; WP:CE02147
C14B1.1 Aff_C14B1.1 P W All gene names: pdi-1; C14B1.1; C14B1.1.1; C14B1.1.2; 3E790; CE00897; NM_065345; WBGene00003962; WP:CE00897 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: protein disulfide isomerase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 UPR genes, Wang                             
                                              et al 2003  S4 Climbing, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

C14B1.3 Aff_C14B1.3 P W All gene names: C14B1.3; 3E793; CE00900; WBGene00007574; WP:CE00900 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, IVb male soma enriched genes, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

C14B1.6 Aff_C14B1.6 P W All gene names: C14B1.6; 3E807; CE31415; WBGene00007577; WP:CE31415
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C14B9.2 Aff_C14B9.2 P W All gene names: C14B9.2; C14B9.2.1; C14B9.2.2; 3J225; CE30601; WBGene00015752; WP:CE30601 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: erp72
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C14B9.4 Aff_C14B9.4, Aff_K06H7.1 P W All gene names: plk-1; C14B9.4; C14B9.4a.1; C14B9.4a.2; 3J193; CE26649; CE30602; WBGene00004042; WP:CE26649; WP:CE30602; plc1 WormBase description: plk-1 encodes a serine/threonine polo-like kinase homologous to Drosophila polo and Saccharomyces cerevisiae CDC5; PLK-1 is required for meiotic nuclear envelope breakdown, polar body formation and extrusion, and proper chromosome segregation during meiosis, and additionally, may play a role in germline development; PLK-1 is proposed to phosphorylate REC-8, a meiotic-specific cohesin, thus promoting REC-8 degradation and subsequent separation of sister chromatids; PLK-1 is localized diffusely in the cytoplasm of mature oocytes, but during meiosis I becomes associated with pre-metaphase chromatin and then at anaphase with chromatin and the area between dividing chromatin; in embryos, PLK-1 localizes to centrosomes, metaphase chromatin, and during telophase, to the area between dividing chromatin.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              males vs glp4 male enriched , Reinke et al 2004, wt                                
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C14B9.6 Aff_C14B9.5 P W All gene names: gei-8; pqn-12; C14B9.6; 3J202; CE29577; CE30603; CE36784; NM_066371; NM_066372; NM_171207; WBGene00001565; WP:CE29577; WP:CE30603; WP:CE36784 WormBase description: gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains; interacts with GEX-3 in yeast two-hybrid assays.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C14B9.7 Aff_C14B9.7 P W All gene names: rpl-21; C14B9.7; C14B9.7.1; C14B9.7.2; C14B9.7.3; 3J218; CE00078; NM_066373; WBGene00004433; WP:CE00078 WormBase description: rpl-21 encodes a large ribosomal subunit L21 protein; by homology, RPL-21 is predicted to function in protein biosynthesis; in C. elegans, RPL-21 activity is required for embryonic and germline development. WormBase CDS description: Ribosomal protein L21
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C14B9.8 Aff_C14B9.8 P W All gene names: C14B9.8; 3J230; CE38273; WBGene00015754; WP:CE38273 WormBase description: C14B9.8 is orthologous to the human gene PHOSPHORYLASE KINASE, LIVER, ALPHA-2 SUBUNIT (PHKA2; OMIM:306000), which when mutated leads to liver glycogenosis. WormBase CDS description: Phosphorylase kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, list                             
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S7 SAGE genes in                               
                                              the dataset, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit                                                                         

C14C10.4 Aff_C14C10.4 P W All gene names: C14C10.4; C14C10.4.1; C14C10.4.2; 5N74; CE05283; WBGene00007587; WP:CE05283
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, GO categories, Reinke                             
                                              et al 2004, herm soma enriched genes, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C14C10.5 Aff_C14C10.5 P W All gene names: C14C10.5; 5N87; CE05284; WBGene00007588; WP:CE05284 WormBase description: Human mRNA (KIAA0077) product like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C14C11.7 Aff_C14C11.7 P W All gene names: C14C11.7; 5G146; CE06826; WBGene00015769; WP:CE06826
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C14F11.2 Aff_C14F11.2 P W All gene names: C14F11.2; CE29578; WBGene00015779; WP:CE29578; XG828
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C14F11.6 Aff_C14F11.6 P W All gene names: C14F11.6; CE02482; WBGene00015781; WP:CE02482; XG856 WormBase description: DTDP-4-dehydrorhamnose 3,5-epimerase (RFBC gene)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

C14F5.1 Aff_C14F5.1 P W All gene names: BCL-2; C14F5.1; CE01780; CE29172; WBGene00015776; WP:CE01780; WP:CE29172; XI573
C14H10.2 Aff_C14H10.2 P W All gene names: C14H10.2; CE23543; WBGene00007592; WP:CE23543; XK862
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C15C8.1 Aff_C15C8.1 P W All gene names: C15C8.1; 5N215; CE05285; WBGene00007604; WP:CE05285
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C15F1.4 Aff_C15F1.E P W All gene names: ppp-1; C15F1.4; C15F1.E; 2H256; CE23548; NM_063027; WBGene00004090; WP:CE23548 WormBase description: translation initiation factor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

C15F1.6 Aff_C15F1.C P W All gene names: art-1; C15F1.6; 2H262; CE20509; NM_063029; WBGene00000198; WP:CE20509 WormBase description: a protein similar to synaptic glycoprotein SC2 from mammals.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C15H11.4 Aff_C15H11.4 P W All gene names: dhs-22; C15H11.4; 5O900; CE08181; NM_074169; WBGene00000985; WP:CE08181 WormBase description: dhs-22 encodes a short-chain dehydrogenase predicted to be mitochondrial. WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C15H11.8 Aff_C15H11.8 P W All gene names: C15H11.8; 5O904; CE08185; WBGene00007616; WP:CE08185 WormBase description: DNA-directed RNA polymerase I like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

C15H11.9 Aff_C15H11.9 P W All gene names: C15H11.9; C15H11.9.1; C15H11.9.2; 5O906; CE08186; WBGene00007617; WP:CE08186 WormBase description: Human HA0609 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C15H9.1 Aff_C15H9.1 P W All gene names: nnt-1; C15H9.1; CE08176; NM_076627; WBGene00003778; WP:CE08176; XG745 WormBase description: nnt-1 encodes a proton-pumping nicotinamide nucleotide transhydrogenase predicted to be mitochondrial. WormBase CDS description: NAD(P) transhydrogenase, mitochondrial
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C15H9.10 Aff_C15H9.10 P W All gene names: C15H9.10; CE06836; WBGene00015804; WP:CE06836; XG730
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C15H9.6 Aff_C15H9.6 P W All gene names: hsp-3; C15H9.6; C15H9.6.1; C15H9.6.2; C15H9.6.3; CE08177; NM_076618; WBGene00002007; WP:CE08177; XG708 WormBase description: hsp-3 encodes a heat shock response 70 (hsp70) protein orthologous to human glucose regulated protein 78 (grp78/BiP, OMIM:138120); HSP-3 likely functions as a molecular chaperone, and is expressed constitutively (expression is not heat inducible) throughout development with greatest abundance during the L1 larval stage; HSP-3 contains a long hydrophobic amino terminus and a carboxyl terminal KDEL sequence suggesting that it may be retained in the endoplasmic reticulum. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig2a heat shock                                             

C15H9.7 Aff_C15H9.7 P W All gene names: C15H9.7; CE06835; WBGene00015802; WP:CE06835; XG726 WormBase description: kynureninase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Murphy et al 2003  Fig2 Class2 shorten                                   
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C15H9.8 Aff_C15H9.8 P W All gene names: prx-3; C15H9.8; CE04000; NM_076624; WBGene00004193; WP:CE04000; XG732 WormBase description: prx-3 is orthologous to the human gene PEROXISOMAL BIOGENESIS FACTOR 3 (PEX3; OMIM:603164), which when mutated leads to Zellweger syndrome of complementation group G.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C16A3.1 Aff_C16A3.1 P W All gene names: C16A3.1; C16A3.1a.1; C16A3.1a.2; 3H483; CE27688; CE30605; CE30606; WBGene00015806; WP:CE27688; WP:CE30605; WP:CE30606 WormBase description: C16A3.1 is orthologous to the human gene SMARCAL1 (SMARCAL1; OMIM:606622), which when mutated leads to disease
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C16A3.2 Aff_C16A3.2 P W All gene names: C16A3.2; 3H479; CE08188; WBGene00015807; WP:CE08188 WormBase description: protein-tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, IVb male                                
                                              soma enriched genes, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

C16A3.3 Aff_C16A3.3 P W All gene names: C16A3.3; 3H477; CE27690; NM_065997; WBGene00015808; WP:CE27690
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig5                                    
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C16A3.4 Aff_C16A3.4 P W All gene names: C16A3.4; 3H473; CE04004; WBGene00015809; WP:CE04004
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig5 conserved                            
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C16A3.5 Aff_C16A3.5 P W All gene names: C16A3.5; C16A3.5.1; C16A3.5.2; 3H471; CE04005; WBGene00015810; WP:CE04005 WormBase description: NADH-ubiquinone oxidoreductase B22
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

C16A3.6 Aff_C16A3.6 P W All gene names: C16A3.6; 3H469; CE04006; WBGene00015811; WP:CE04006
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig5 conserved w/ yeast,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C16A3.9 Aff_C16A3.9 P W All gene names: rps-13; C16A3.9; C16A3.9.1; C16A3.9.2; 3H464; CE04009; NM_065992; WBGene00004482; WP:CE04009 WormBase description: rps-13 encodes a small ribosomal subunit S13 protein; by homology, RPS-13 is predicted to function in protein biosynthesis; in C. elegans, RPS-13 activity is required for embryonic and germline development. WormBase CDS description: 40S ribosomal protein S13
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C16B8.4 Aff_C16B8.4 P W All gene names: C16B8.4; CE30248; WBGene00015824; WP:CE30248; XE590
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

C16C10.10 Aff_C16C10.10 P W All gene names: tag-73; C16C10.10; 3F243; CE01490; WBGene00006448; WP:CE01490 WormBase description: Glyoxalase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C16C10.11 Aff_C16C10.11 P W All gene names: C16C10.11; C16C10.11.1; C16C10.11.2; 3F241; CE01491; WBGene00007630; WP:CE01491
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C16C10.5 Aff_C16C10.5 P W All gene names: C16C10.5; 3F260; CE01496; WBGene00007626; WP:CE01496 WormBase description: Glutaredoxin, Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan                                                                   

C16C10.6 Aff_C16C10.6 P W All gene names: C16C10.6; 3F258; CE01497; WBGene00007627; WP:CE01497
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, Romagnolo et al                               
                                              2002  Fig3b others, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C16C10.7 Aff_C16C10.7 P W All gene names: rnf-5; C16C10.7; 3F254; CE01498; NM_065429; WBGene00004381; WP:CE01498 WormBase description: This gene encodes a homolog of mammalian RNF5, a C3HC4 (RING-finger) zinc-finger protein. WormBase CDS description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C16C4.6 Aff_C16C4.6 P W All gene names: fbxb-98; C16C4.6; 2C131; CE08202; WBGene00015830; WP:CE08202 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C16D9.6 Aff_C16D9.6 P W All gene names: C16D9.6; 5I726; CE35240; WBGene00015861; WP:CE35240
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C16H3.3 Aff_C16H3.3, Aff_C16H3.4 P W All gene names: C16H3.3; CE08237; CE27697; WBGene00015868; WP:CE08237; WP:CE27697; XS216
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

C17B7.3 Aff_C17B7.3 P W All gene names: C17B7.3; 5D823; CE16851; WBGene00015877; WP:CE16851
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C17C3.1 Aff_C17C3.1 P W All gene names: C17C3.1; 2F863; CE27070; CE27071; CE27072; CE27073; CE39676; WBGene00015887; WP:CE27070; WP:CE27071; WP:CE27072; WP:CE27073; WP:CE39676
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C17C3.12 Aff_C17C3.12 P W All gene names: acdh-2; C17C3.12; C17C3.12c.1; C17C3.12c.2; CE29175; CE29176; CE34697; NM_062665; NM_062666; NM_062667; WBGene00015894; WP:CE29175; WP:CE29176; WP:CE34697 WormBase description: acyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C17C3.7 Aff_C17C3.7 P W All gene names: hlh-25; C17C3.7; 2F825; CE04027; NM_062662; WBGene00001964; WP:CE04027
C17C3.8 Aff_C17C3.8 P W All gene names: hlh-26; C17C3.8; 2F822; CE04028; NM_062661; WBGene00001965; WP:CE04028
C17D12.7 Aff_C17D12.7 P W All gene names: C17D12.7; 1M196; CE23554; WBGene00007640; WP:CE23554
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C17E4.2 Aff_C17E4.2 P W All gene names: C17E4.2; 1J991; CE08251; WBGene00007642; WP:CE08251 WormBase description: myosin heavy chain like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E                                                                          

C17E4.6 Aff_C17E4.8 P W All gene names: C17E4.6; 1K7; CE25780; WBGene00007645; WP:CE25780 WormBase description: YL-1 protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

C17G1.3 Aff_C17G1.3 P W All gene names: ugt-23; C17G1.3; CE08282; WBGene00007650; WP:CE08282; XK542 WormBase description: UDP-glucosyltransferase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, GO categories, Reinke et                             
                                              al 2004, herm soma enriched genes, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

C17G1.4 Aff_C17G1.4 P W All gene names: C17G1.4; CE08283; CE37318; WBGene00007651; WP:CE08283; WP:CE37318; XK546
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, fem1 enriched                                
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

C17G1.7 Aff_C17G1.7 P W All gene names: C17G1.7; C17G1.7.1; C17G1.7.2; CE39223; WBGene00007653; WP:CE39223; XK572 WormBase description: cysteine synthase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C17G10.1 Aff_C17G10.1 P W All gene names: C17G10.1; C17G10.1.1; C17G10.1.2; 2F887; CE01785; WBGene00015915; WP:CE01785
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

C17G10.2 Aff_C17G10.2 P W All gene names: C17G10.2; 2F885; CE29583; WBGene00015916; WP:CE29583 WormBase description: TPR domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Wang et al                               
                                              2003  S5 genes common to feeding ANOVA, Wang et al 2003                            
                                               S3  genes pass one-way ANOVA                                                      

C17G10.8 Aff_C17G10.8 P W All gene names: dhs-6; C17G10.8; CED6.1; 2F906; CE02490; WBGene00000970; WP:CE02490 WormBase description: The dhs-6 locus is predicted to encode four transcripts derived from alternative splicing and alternative transcriptional initiation sites; the longest transcript is predicted to encode a member of the eukaryotic translation initiation factor family within its amino-terminal end, and is a member of both the SCP-2 sterol transfer family and short-chain dehydrogenase-reductase families within its carboxyl-terminal end; DHS-6 is predicted to be mitochondrial. WormBase CDS description: Alcohol dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C18A11.5 Aff_C18A11.5 P W All gene names: xol-1; C18A11.5; CE24807; CE35708; CE35709; WBGene00006962; WP:CE24807; WP:CE35708; WP:CE35709; XI661
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C18A11.7 Aff_C18A11.7 P W All gene names: dim-1; C18A11.7; C18A11.7b.1; C18A11.7b.2; C18A11.7b.3; C18A11.7b.4; CE04038; CE27706; WBGene00001000; WP:CE04038; WP:CE27706; XI670
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C                                      

C18A3.2 Aff_C18A3.2 P W All gene names: C18A3.2; 2G9; CE27707; WBGene00015940; WP:CE27707
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              F, Reinke et al 2004, list of genes in cluster order,                              
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C18A3.5 Aff_C18A3.5 P W All gene names: C18A3.5; C18A3.5e.1; C18A3.5e.2; C18A3.5f.1; C18A3.5f.2; C18A3.5f.3; C18A3.5f.4; C18A3.5f.5; 2G2; CE27708; CE27709; CE27710; CE32130; CE32131; WBGene00015943; WP:CE27708; WP:CE27709; WP:CE27710; WP:CE32130; WP:CE32131 WormBase description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma                                       

C18A3.8 Aff_C18A3.8 P W All gene names: hlh-14; C18A3.8; 2G28; CE36629; NM_062730; WBGene00001958; WP:CE36629 WormBase description: hlh-14 encodes a basic helix-loop-helix (bHLH) transcription factor that is one of five C. elegans Achaete-Scute family homologs; HLH-14 activity is required generally for normal egg-laying, movement, body morphology, and larval development; more specifically, HLH-14 is required for proper neuronal development, particularly for regulation of the asymmetric cell division that gives rise to the PVQ/HSN/PHB neuroblasts and for normal differentiation of these neuroblast descendants, including their cell division patterns, migrations, and neurotransmitter expression; in specifying neuronal cell fates, genetic evidence suggests that hlh-14 acts together with hlh-2, which encodes the C. elegans E/Daughterless ortholog; HLH-14 is expresed exclusively in the embryo and detected in the left and right PVQ/HSN/PHB neuroblasts and their descendants, as well as in other cells identified, tentatively, as anterior neuroblasts and posterior neuroblasts such as Caapa. WormBase CDS description: helix-loop-helix transcription factor
C18B12.6 Aff_C18B12.6 P W All gene names: C18B12.6; CE32590; WBGene00007668; WP:CE32590; XP624
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C18B2.4 Aff_C18B2.4 P W All gene names: C18B2.4; CE04043; WBGene00015955; WP:CE04043; XE224
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C18C4.10 Aff_C18C4.10 P W All gene names: klc-2; C18C4.10; C18C4.10b.1; C18C4.10b.2; C18C4.10b.3; C18C4.10b.4; C18C4.10b.5; C18C4.10c.1; C18C4.10c.2; C18C4.10d.1; C18C4.10d.2; 5G58; CE27362; CE32802; CE32803; CE36917; WBGene00002215; WP:CE27362; WP:CE32802; WP:CE32803; WP:CE36917 WormBase description: klc-2 encodes a kinesin light chain and was identified as a protein that interacts with UNC-16 by the yeast two-hybrid system, this association suggests that KLC-2 may be involved in the regulation of synaptic vesicle localization by the UNC-16-JNK signaling complex.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C18D1.1 Aff_C18D1.1 P W All gene names: die-1; C18D1.1; C18D1.1.1; C18D1.1.2; 2K352; CE01501; NM_063774; WBGene00000995; WP:CE01501 WormBase description: die-1 encodes a C2H2 zinc finger protein containing four fingers, homologous to CG18265-PA in Drosophila; DIE-1 is autonomously required in the posterior dorsal hypodermis for intercalation, for morphogenesis in other embryonic tissues, and for normal postembryonic growth and vulval development. WormBase CDS description: Zinc finger, C2H2 type (3 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

C18D11.2 Aff_C18D11.2 P W All gene names: maa-1; C18D11.2; 3M910; CE18513; NM_067130; WBGene00007680; WP:CE18513 WormBase description: maa-1 encodes a predicted membrane-associated Acyl-CoA binding protein; loss of maa-1 activity via RNAi results in no obvious defects. WormBase CDS description: Acyl CoA binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C18D11.4 Aff_C18D11.4 P W All gene names: rsp-8; C18D11.4; C18D11.4.1; C18D11.4.2; 3M919; CE18515; NM_067132; WBGene00004705; WP:CE18515 WormBase description: RNA recognition motif. (aka RRM, RBD, or RNP domain)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C18D4.6 Aff_C18D4.6 P W All gene names: C18D4.6; 5S16; CE32310; CE32311; CE36469; WBGene00007675; WP:CE32310; WP:CE32311; WP:CE36469
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, mixed oogenesis soma, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C18E3.2 Aff_C18E3.2 P W All gene names: C18E3.2; C18E3.2.1; C18E3.2.2; 1E779; CE30249; WBGene00015971; WP:CE30249 WormBase description: The C18E3.2 gene encodes a homolog of Swp73/BAF60, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; C18E3.2 is probably required during mitosis of the T cells for asymmetric cell division.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002  Fig3D                                  
                                              Oocyte-en, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C18E9.3 Aff_C18E9.3 P W All gene names: pqn-14; C18E9.3; C18E9.3c.1; C18E9.3c.2; C18E9.3c.3; 2J258; CE20519; CE32804; CE38277; NM_063508; NM_063509; WBGene00004105; WP:CE20519; WP:CE32804; WP:CE38277 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen                                           

C18E9.6 Aff_C18E9.6 P W All gene names: C18E9.6; 2J262; CE05298; WBGene00007686; WP:CE05298
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S5 genes                              
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

C18G1.2 Aff_C18G1.2 P W All gene names: C18G1.2; 5F251; CE17418; WBGene00015981; WP:CE17418 WormBase description: GATA transcription factor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C18H7.3 Aff_C18H7.3 P W All gene names: col-102; C18H7.3; 4B353; CE17428; NM_067556; WBGene00000676; WP:CE17428 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C18H9.3 Aff_C18H9.3 P W All gene names: C18H9.3; 2G981; CE01803; WBGene00016002; WP:CE01803
C23F12.1 Aff_B0272.5 P W All gene names: C23F12.1; CE32133; CE32134; WBGene00016006; WP:CE32133; WP:CE32134; XK45
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

C23G10.3 Aff_C23G10.3 P W All gene names: rps-3; C23G10.3; C23G10.3.1; C23G10.3.2; 3H297; CE01810; NM_065948; WBGene00004472; WP:CE01810 WormBase description: rps-3 encodes a small ribosomal subunit S3 protein that contains a KH RNA-binding domain and by homology,is predicted to function in protein biosynthesis; in C. elegans, RPS-3 activity is required for embryonic and germline development, as well as the overall health of the animal. WormBase CDS description: Ribosomal protein S3
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C23G10.8 Aff_C23G10.8 P W All gene names: C23G10.8; C23G10.9; 3H292; CE25784; WBGene00016015; WP:CE25784 WormBase description: S. pombe adenylyl cyclase-associated protein (weak)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen                                                       

C23H3.1 Aff_C23H3.1 P W All gene names: cog-4; egl-26; egl-48; C23H3.1; 2A377; CE08320; NM_061251; WBGene00001193; WP:CE08320 WormBase description: egl-26 encodes a novel protein that contains an H-box/NC domain that is highly conserved with CBP01801 in C. briggsae and is required for embryonic and larval viability, egg-laying, fertility, and affects the connection of the uterus to the vulva; required in the primary vulval lineage for vulF morphogenesis and is expressed in many cells, but is expressed near the vulva and uterus only during the L4 larval stage.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, mixed oogenesis soma, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

C23H3.5 Aff_C23H3.5 P W All gene names: C23H3.5; C23H3.5.1; C23H3.5.2; 2A339; CE08324; WBGene00016021; WP:CE08324
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C23H4.6 Aff_C23H4.6 P W All gene names: C23H4.6; CE08332; WBGene00007694; WP:CE08332; XM859 WormBase description: Yeast RAD18 protein like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol                             

C24B5.4 Aff_C24B5.4 P W All gene names: C24B5.4; 5J674; CE37611; WBGene00016046; WP:CE37611
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C24D10.4 Aff_C24D10.4 P W All gene names: C24D10.4; 4F925; CE16876; WBGene00016055; WP:CE16876
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C24D10.6 Aff_C24D10.6 P W All gene names: C24D10.6; 4F924; CE16878; WBGene00016057; WP:CE16878
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C24F3.2 Aff_C24F3.2 P W All gene names: C24F3.2; 4K987; CE18519; WBGene00007697; WP:CE18519 WormBase description: Dual specificity phosphatase, catalytic domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C24F3.4 Aff_C24F3.4 P W All gene names: C24F3.4; 4K980; CE18521; WBGene00007698; WP:CE18521
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C24G6.4 Aff_C24G6.4 P W All gene names: Csr-1; nhr-279; nhr-47; C24G6.4; C24G6.4.1; C24G6.4.2; 5F989; CE27727; NM_072054; WBGene00003637; WP:CE27727 WormBase description: nhr-47 is predicted to encode a nuclear hormone receptor (NHR); gene expression of nhr-47 appears to be induced upon exposure of worm cultures to estradiol. WormBase CDS description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C24H11.2 Aff_C24H11.1 P W All gene names: C24H11.2; 3M880; CE18525; WBGene00007700; WP:CE18525 WormBase description: Protein phosphatase-1 (PP1)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt herm enriched gen, Reinke et al                             
                                              2004, fem3 enriched genes, Reinke et al 2004, wt males                             
                                              vs glp4 male enriched , Reinke et al 2004, mixed sperm                             
                                              soma, Reinke et al 2004, list of genes in cluster D,                               
                                              Reinke et al 2004, GO categories                                                   

C24H11.3 Aff_C24H11.3 P W All gene names: tbx-38; C24H11.3; 3M874; CE18526; NM_067125; WBGene00006557; WP:CE18526 WormBase description: T-box
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

C24H12.4 Aff_C24H12.4 P W All gene names: C24H12.4; 2A705; CE27728; CE29675; WBGene00016073; WP:CE27728; WP:CE29675 WormBase description: helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen                                                       

C25A1.1 Aff_C25A1.1 P W All gene names: C25A1.1; 1K739; CE08366; WBGene00007705; WP:CE08366
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig1-4                                    
                                              conserved w/ Drosoph                                                               

C25A1.10 Aff_C25A1.10 P W All gene names: dao-5; C25A1.10; 1K764; CE08376; CE38279; WBGene00000931; WP:CE08376; WP:CE38279 WormBase description: dao-5 encodes a predicted nucleolar phosphoprotein related to Saccharomyces cerevisiae SRP40 and the vertebrate Nopp140 proteins that may play a role in rRNA gene transcription and nucleolar structural organization; dao-5 expression is negatively regulated by the DAF-2/insulin-like receptor and positively regulated by the DAF-16/fork-head transcription factor, suggesting that dao-5 may be involved in life-span determination; dao-5 is strongly expressed in dauer larvae.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

C25A1.13 Aff_C25A1.13 P W All gene names: C25A1.13; 1K769; CE08379; WBGene00007712; WP:CE08379 WormBase description: NADH-ubiquinone oxidoreductase B8 subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C25A1.3 Aff_C25A1.3 P W All gene names: tag-72; C25A1.3; 1K736; CE36918; WBGene00006447; WP:CE36918 WormBase description: Yeast ABD1 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, Fig2b shared gemlines,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, GO categories,                             
                                              Romagnolo et al 2002  Fig3b Protein Synthesis,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C25A1.4 Aff_C25A1.4 P W All gene names: C25A1.4; C25A1.4.1; C25A1.4.2; 1K746; CE08369; WBGene00007706; WP:CE08369 WormBase description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C25A1.5 Aff_C25A1.5 P W All gene names: C25A1.5; 1K755; CE08370; WBGene00007707; WP:CE08370 WormBase description: Yeast hypothetical 44.9 KD protein like
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

C25B8.4 Aff_C25B8.4 P W All gene names: C25B8.4; CE27087; CE34259; CE34260; WBGene00016088; WP:CE27087; WP:CE34259; WP:CE34260; XH236 WormBase description: asialoglycoprotein receptor
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C25D7.3 Aff_C25D7.3 P W All gene names: dpy-29; sdc-3; C25D7.3; 5P520; CE08389; NM_074302; WBGene00004747; WP:CE08389 WormBase description: sdc-3 encodes a protein that contains two mutationally separable domains: a zinc finger motif required for dosage compensation and a myosin- like putative ATP- binding region required for her-1 regulation of sex determination; SDC-3 activates dosage compensation by directing the dosage compensation protein complex to the hermaphrodite X chromosomes, and is functionally redundant with SDC-2 with respect to dosage compensation; SDC-1, SDC-2, and SDC-3 proteins form a complex. WormBase CDS description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, mixed oogenesis soma                                                         

C25F6.1 Aff_C25F6.1 P W All gene names: C25F6.1; CE02494; WBGene00016102; WP:CE02494; XG107
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C25F6.2 Aff_C25F6.2 P W All gene names: dlg-1; C25F6.2; C25F6.2a.1; C25F6.2a.2; C25F6.2b.1; C25F6.2b.2; CE34261; CE36524; NM_076527; WBGene00001006; WP:CE34261; WP:CE36524; XG103 WormBase description: dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph                                                                            

C25F6.3 Aff_C25F6.3 P W All gene names: C25F6.3; CE38489; WBGene00016103; WP:CE38489; XG89 WormBase description: The C25F6.3 gene encodes an ortholog of the human gene DIHYDROPYRIMIDINE DEHYDROGENASE (DPYD), which when mutated leads to thymine-uraciluria (OMIM:274270).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C25G4.10 Aff_C25G4.10 P W All gene names: C25G4.10; 4N233; CE28206; WBGene00007736; WP:CE28206 WormBase description: fibronectin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C25G4.2 Aff_C25G4.2 P W All gene names: C25G4.2; 4N208; CE05303; WBGene00007730; WP:CE05303 WormBase description: dihydrofolate reductase like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C25G4.5 Aff_C25G4.5 P W All gene names: dpy-26; C25G4.5; 4N212; CE08398; NM_069977; WBGene00001085; WP:CE08398 WormBase description: SDC-1, SDC-2, and SDC-3 proteins form a complex (detectable by coimmunoprecipitation); these three proteins, in turn, colocalize with DPY-26, DPY-27, and MIX-1 proteins both on a transgenic her-1(+) array and on the X chromosome.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen                                                       

C25G6.2 Aff_C25G6.2 P W All gene names: tsp-9; C25G6.2; CE04083; NM_075831; WBGene00006635; WP:CE04083; XB865 WormBase description: transpanin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C25G6.5 Aff_C25G6.5 P W All gene names: C25G6.5; CE04086; WBGene00016110; WP:CE04086; XB868 WormBase description: G-protein coupled receptor (family 1)
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph                                 

C26B2.1 Aff_C26B2.1 P W All gene names: C26B2.1; 4I784; CE04087; WBGene00016124; WP:CE04087
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol                                                     

C26B9.1 Aff_C26B9.1 P W All gene names: C26B9.1; CE30880; CE34262; NM_076507; WBGene00016131; WP:CE30880; WP:CE34262
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C26C6.1 Aff_C26C6.1 P W All gene names: tag-185; C26C6.1; C26C6.1b.1; C26C6.1b.2; C26C6.1b.3; 1I79; CE30254; CE38280; WBGene00007042; WBGene00007738; WP:CE30254; WP:CE38280 WormBase description: HMG (high mobility group) box, Bromodomain (5 domains), Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C26D10.2 Aff_C26D10.2 P W All gene names: hel-1; C26D10.2; C26D10.2b.1; C26D10.2b.2; 2I618; CE03025; CE32593; WBGene00001840; WP:CE03025; WP:CE32593; hel WormBase description: translation initiation factor eIF-4A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C26E6.4 Aff_C26E6.4 P W All gene names: phi-14; rpb-2; C26E6.4; 3G33; CE01162; NM_065646; WBGene00016140; WP:CE01162 WormBase description: DNA-directed RNA polymerase II
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C26E6.6 Aff_C26E6.6 P W All gene names: C26E6.6; C26E6.6.1; C26E6.6.2; 3G25; CE39477; WBGene00016142; WP:CE39477 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Ribosomal protein L3
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C26E6.8 Aff_C26E6.8 P W All gene names: ula-1; C26E6.8; C26E6.8.1; C26E6.8.2; 3G8; CE29678; NM_065636; WBGene00006735; WP:CE29678 WormBase description: The ula-1 gene encodes a component of the enzyme that activates NED-8, which in turn is a ubiquitin-like protein whose conjugating enzyme is UBC-12.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C26F1.4 Aff_C26F1.4 P W All gene names: rps-30; C26F1.4; C26F1.4.1; C26F1.4.2; C26F1.4.3; 5I257; CE06878; NM_072606; WBGene00004499; WP:CE06878 WormBase description: rps-30 encodes two proteins, a small ribosomal subunit S30 protein and ubiquitin, which is cleaved from the ribosomal protein posttranslationally; by homology, S30 is predicted to function in protein biosynthesis and ubiquitin in protein degradation; in C. elegans, loss of rps-30 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities. WormBase CDS description: ribosomal protein/ubiquitin-like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C26F1.9 Aff_C26F1.9 P W All gene names: rpl-39; C26F1.9; C26F1.9.1; C26F1.9.2; 5I256; CE06883; NM_072605; WBGene00004453; WP:CE06883 WormBase description: rpl-39 encodes a large ribosomal subunit L39 protein. WormBase CDS description: ribosomal protein L39
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C26G2.1 Aff_C26G2.1 P W All gene names: syg-2; C26G2.1; CE19703; NM_078034; WBGene00007750; WP:CE19703; XP281 WormBase description: syg-2 encodes a transmembrane protein that is a member of the immunoglobulin superfamily of proteins; during larval development, SYG-2 activity is required in vulval epithelial cells for proper synaptic specificity of the HSNL neuron; in regulating synapse formation, SYG-2 acts as a guidepost protein for the SYG-1 receptor that interacts with SYG-2 and acts within HSNL to regulate synaptic specificity; a SYG-2::GFP fusion protein is expressed in the primary vulval cell lineages beginning at the L3 larval stage, with expression increasing during the L4 stage and finally disappearing by adulthood; in embryos, SYG-2::GFP expression is detected in some head neurons and body wall muscles, the latter of which also express the reporter during the L1 and L2 larval stages. WormBase CDS description: Immunoglobulin domain ; Fibronectin type III domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C27A12.2 Aff_C27A12.2 P W All gene names: C27A12.2; 1G621; CE08411; WBGene00016154; WP:CE08411 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, oogenesis enriched                               
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

C27A12.6 Aff_C27A12.6 P W All gene names: C27A12.6; 1G630; CE08415; WBGene00016156; WP:CE08415
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C27A12.7 Aff_C27A12.7 P W All gene names: C27A12.7; C27A12.7a.1; C27A12.7a.2; C27A12.7b.1; C27A12.7b.2; C27A12.7b.3; C27A12.7b.4; C27A12.7b.5; C27A12.7b.6; 1G634; CE08416; CE32810; WBGene00016157; WP:CE08416; WP:CE32810
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

C27A12.9 Aff_C27A12.9 P W All gene names: C27A12.9; 1G638; CE36272; WBGene00016159; WP:CE36272
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

C27A2.2 Aff_C27A2.2 P W All gene names: rpl-22; C27A2.2; C27A2.2a.1; C27A2.2a.2; 2F347; CE04102; CE29188; NM_062531; NM_062532; WBGene00004434; WP:CE04102; WP:CE29188 WormBase description: rpl-22 encodes a large ribosomal subunit L22 protein; by homology, RPL-22 is predicted to function in protein biosynthesis; in C. elegans, RPL-22 activity is broadly required for embryonic and germline development, as well as normal body coloration, morphology, and postembryonic growth rates.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C27A2.6 Aff_C27A2.6 P W All gene names: dsh-2; C27A2.6; 2F370; CE27097; NM_062536; WBGene00001102; WP:CE27097 WormBase description: dsh-2 encodes a protein containing a DIX domain, a DEP domain, and a PDZ domain that is required for embryonic viability and functions in Wnt pathway signaling between the embryonic blastomeres P2 and EMS with respect to endoderm specification and to orient the division axis of the EMS cell; expressed from the four-cell embryo stage, and is primarily associated with membranes.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig4 Wnt signaling                              
                                              genes, Reinke et al 2004, fem1 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

C27B7.4 Aff_C27B7.4 P W All gene names: C27B7.4; 4J665; CE17477; WBGene00007761; WP:CE17477 WormBase description: DNA repair protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

C27C12.1 Aff_C27C12.1 P W All gene names: C27C12.1; CE05318; WBGene00007771; WP:CE05318; XP470
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C27C12.6 Aff_C27C12.6 P W All gene names: dmd-4; C27C12.6; CE23560; WBGene00007776; WP:CE23560; XP476 WormBase description: doublesex protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C27C7.7 Aff_C27C7.7 P W All gene names: C27C7.7; 1M11; CE18537; WBGene00007769; WP:CE18537
C27D11.1 Aff_C27D11.1 P W All gene names: eif-3.A; egl-45; C27D11.1; 3I914; CE00543; NM_066297; WBGene00001209; WP:CE00543 WormBase description: egl-45 encodes a homolog of eukaryotic translation initiation factor 3, subunit 10, that affects development of the HSNs that affect egg laying.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C27D8.3 Aff_C27D8.3 P W All gene names: C27D8.3; 4N472; CE08422; CE39679; WBGene00007779; WP:CE08422; WP:CE39679 WormBase description: The C27D8.3 gene encodes a protein that may be involved in apoptosis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C27F2.5 Aff_C27F2.5 P W All gene names: C27F2.5; C27F2.5.1; C27F2.5.2; 3G50; CE26875; WBGene00016167; WP:CE26875 WormBase description: S. cerevisiae Snf8p
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster A,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C27F2.8 Aff_C27F2.8 P W All gene names: C27F2.8; 3G82; CE39000; WBGene00016170; WP:CE39000
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C27H5.3 Aff_C27H5.3 P W All gene names: C27H5.3; C27H5.3.1; C27H5.3.2; C27H5.3.3; 2H445; CE27099; WBGene00016173; WP:CE27099 WormBase description: Probable RNA binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C27H6.2 Aff_C27H6.2 P W All gene names: ruvb-1; C27H6.2; 5K460; CE08426; NM_073166; WBGene00007784; WP:CE08426 WormBase description: Yeast hypothetical 50.5 KD protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C27H6.4 Aff_C27H6.4 P W All gene names: C27H6.4; 5K464; CE08428; CE31322; WBGene00007786; WP:CE08428; WP:CE31322
C27H6.8 Aff_K08H10.8 P W All gene names: C27H6.8; C27H6.8.1; C27H6.8.2; K08H10.8; 5K466; CE18880; WBGene00007787; WP:CE18880 WormBase description: Yeast hypothetical protein YEY6 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 daf-16 Resveratrol, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

C28A5.4 Aff_C28A5.4 P W All gene names: ceh-43; C28A5.4; 3F536; CE05325; NM_065503; WBGene00000463; WP:CE05325 WormBase description: A homeobox protein of the Distal-less (Dll) class that is required for development of the anterior hypdermis during embryonic morphogenesis for cell adhesion; also affects embryonic and larval viability; it is predominantly expressed in the head hypdodermis, neuronal support cells and CAN neurons. WormBase CDS description: homeobox protein (distal-less subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Portman et al 2004  T1 25                                    
                                              candidate ray genes, Reinke et al 2004, fem1 enriched                              
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C28C12.7 Aff_C28C12.7 P W All gene names: spp-10; C28C12.7; C28C12.7a.1; C28C12.7a.2; 4J243; CE29486; CE31323; NM_171399; NM_171400; WBGene00004995; WP:CE29486; WP:CE31323 WormBase description: spp-10 encodes two protein isoforms that are orthologous to the human gene PROSAPOSIN (PSAP; OMIM:176801, mutated in Gaucher disease and metachromatic leukodystrophy); SPP-10A and -10B are predicted to have 3 and 4 embedded saposin sequences, that are likely to be split into individual saposin peptides by proteolysis; in mammals, saposins activate the enzymes sphingomyelinphosphodiesterase and beta-glucosylceramidase; spp-10 has no obvious function in mass RNAi assays. WormBase CDS description: 7TM chemoreceptor, spp family
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              fem3 enriched genes, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

C28G1.4 Aff_C28G1.4 P W All gene names: C28G1.4; CE04121; WBGene00016189; WP:CE04121; XJ468 WormBase description: zinc finger
C28H8.1 Aff_C28H8.1 P W All gene names: C28H8.1; 3H17; CE01820; WBGene00016192; WP:CE01820 WormBase description: C28H8.1 is orthologous to the human gene BCL7A (OMIM:601406), which when mutated leads to high-grade B-cell non-Hodgkin lymphoma.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, IVb male soma enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C28H8.12 Aff_C28H8.12 P W All gene names: dnc-2; C28H8.12; 3H14; CE01823; NM_065885; WBGene00001018; WP:CE01823 WormBase description: dnc-2 encodes a member of the dynamitin family that affects spindle alignment in polarized cells in early embryos, nuclear movement, spindle morphology, chromosome segregation, and pronuclear migration.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C28H8.3 Aff_C28H8.3 P W All gene names: C28H8.3; C28H8.3.1; C28H8.3.2; C28H8.3.3; 3H3; CE29195; WBGene00016194; WP:CE29195
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C28H8.9 Aff_C28H8.9 P W All gene names: C28H8.9; 3G994; CE06896; CE32813; WBGene00016200; WP:CE06896; WP:CE32813
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

C29A12.3 Aff_C29A12.3 P W All gene names: lig-1; C29A12.3; 5L295; CE37480; CE37481; NM_171537; NM_171538; WBGene00002985; WP:CE37480; WP:CE37481 WormBase description: lig-1 is orthologous to the human gene LIM HOMEOBOX PROTEIN 3 ISOFORM B (LIG1; OMIM:600577), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C29E4.2 Aff_C29E4.2 P W All gene names: tag-261; C29E4.2; 3J33; CE30620; WBGene00016202; WP:CE30620
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

C29E4.5 Aff_C29E4.5 P W All gene names: tag-250; C29E4.5; 3J8; CE29682; CE38589; WBGene00016203; WP:CE29682; WP:CE38589
C29E6.1 Aff_C29E6.1 P W All gene names: let-653; C29E6.1; C29E6.1b.1; C29E6.1b.2; 4M655; CE05332; CE37323; WBGene00002827; WP:CE05332; WP:CE37323 WormBase description: let-653 encodes a mucin-like protein similar to the highly glycosylated mucins secreted by the apical surface of epithelia and believed to provide a protective barrier to exposed cellular surfaces; LET-653 is required for viability, locomotion, and for maintaining the tubular epithelial structure of the excretory cell canals. WormBase CDS description: LET-653 mucin like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

C29F3.1 Aff_C29F3.1 P W All gene names: ech-1; C29F3.1; 5P838; CE08435; NM_074409; WBGene00001150; WP:CE08435 WormBase description: long-chain enoyl-CoA hydratase
C29F4.1 Aff_C29F4.1 P W All gene names: col-125; C29F4.1; C29F4.1.1; C29F4.1.2; 4L991; CE03038; NM_069706; WBGene00000699; WP:CE03038 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C29F7.2 Aff_C29F7.2 P W All gene names: C29F7.2; CE35414; WBGene00007811; WP:CE35414; XO35
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, fem3 enriched genes                                                       

C29F7.3 Aff_C29F7.3 P W All gene names: C29F7.3; CE08444; WBGene00007812; WP:CE08444; XO38 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: uridylate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C29F7.4 Aff_C29F7.4 P W All gene names: fkh-3; C29F7.4; CE08445; NM_077836; WBGene00001435; WP:CE08445; XO40 WormBase description: fork head domain protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C29F7.5 Aff_C29F7.5 P W All gene names: fkh-4; tag-39; C29F7.5; CE08446; NM_077837; WBGene00001436; WP:CE08446; XO46 WormBase description: fkh-4 encodes a member of the forkhead domain transcription factor family. WormBase CDS description: fork head domain protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, mixed oogenesis                                 
                                              soma, Reinke et al 2004, GO categories, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C29F7.6 Aff_C29F7.6 P W All gene names: C29F7.6; CE08447; WBGene00007813; WP:CE08447; XO59
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C29F9.7 Aff_C29F9.7 P W All gene names: pat-4; C29F9.7; C29F9.7.1; C29F9.7.2; 3A708; CE19706; NM_064738; WBGene00003931; WP:CE19706 WormBase description: The pat-4 gene encodes a serine/threonine kinase orthologous to human integrin-linked kinase (