Baugh et al 2003, subclass ETmax_66min, 176 genes

Gene list file name:Baugh2003_classETmax_66min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass ETmax_66min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_F52G2.2 Aff_F52G2.2 P W
AFF_T28A11.14 Aff_T28A11.14 P W
AFF_Y106G6H.10 Aff_Y106G6H.10 P W
AFF_Y106G6H.10_G Aff_Y106G6H.10_G P W
AFF_Y47D3A.O Aff_Y47D3A.O P W
AFF_Y49F6A_1689.C Aff_Y49F6A_1689.C P W
B0035.7 Aff_F54E12.5 P W All gene names: his-47; B0035.7; 4M88; NM_069730; WBGene00001921; his 12 WormBase description: his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. WormBase CDS description: histone H2A
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

B0218.1 Aff_B0218.1 P W All gene names: B0218.1; B0218.1a.1; B0218.1a.2; B0218.1a.3; B0218.1a.4; B0218.1a.5; B0218.1b.1; B0218.1b.2; B0218.1b.3; 4I925; CE06684; CE33351; WBGene00015047; WP:CE06684; WP:CE33351 WormBase description: amidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0303.14 Aff_B0303.14 P W All gene names: B0303.14; 3J804; CE00003; WBGene00015132; WP:CE00003 WormBase description: Giant secretory protein I-C
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0303.8 Aff_B0303.8 P W All gene names: sdz-1; B0303.8; 3J788; CE00001; WBGene00015129; WP:CE00001
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown                                

B0379.3 Aff_B0379.3 P W All gene names: mut-16; pqn-3; B0379.3; 1K661; CE30474; CE30475; NM_060259; NM_060260; WBGene00003508; WP:CE30474; WP:CE30475 WormBase description: mut-16 encodes a glutamine/asparagine (Q/N)-rich domain-containing protein that lacks obvious homologs outside of other nematode species; MUT-16 activity is required for RNA-mediated interference (RNAi), transgene silencing in germ-line and somatic tissues, and for maintaining low levels of transposon mobilization; MUT-16 is thus predicted to play a role in chromatin organizataion and/or regulation of gene expression.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0464.2 Aff_B0464.2 P W All gene names: B0464.2; 3K585; CE20456; WBGene00007184; WP:CE20456 WormBase description: TPR Domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C01F1.1 Aff_C01F1.1 P W All gene names: C01F1.1; 2E595; CE06742; WBGene00015296; WP:CE06742 WormBase description: dna binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C01G5.6 Aff_C01G5.6 P W All gene names: C01G5.6; 4H289; CE23513; WBGene00015308; WP:CE23513
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                               
                                              S4 Dauer Enriched                                                                  

C02F5.6 Aff_C02F5.6 P W All gene names: C02F5.6; CE00042; CE30417; NM_171212; NM_171213; WBGene00015349; WP:CE00042; WP:CE30417
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C04F5.8 Aff_C04F5.8 P W All gene names: C04F5.8; 5F590; CE19672; WBGene00015450; WP:CE19672
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C07E3.1 Aff_C07E3.1 P W All gene names: C07E3.1; 2K638; CE02118; CE23526; WBGene00007412; WP:CE02118; WP:CE23526
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C08F1.8 Aff_C08F1.8 P W All gene names: C08F1.8; 2C92; CE08023; WBGene00015611; WP:CE08023 WormBase description: reverse transcriptase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C13F10.4 Aff_C13F10.4 P W All gene names: C13F10.4; 5H686; CE08145; WBGene00015743; WP:CE08145
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C13F10.7 Aff_C13F10.7 P W All gene names: C13F10.7; 5H702; CE08148; WBGene00015746; WP:CE08148
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C14A4.4 Aff_C14A4.4 P W All gene names: crn-3; C14A4.4; 2K881; CE02145; CE32797; NM_063882; NM_182164; WBGene00000796; WP:CE02145; WP:CE32797 WormBase description: crn-3 encodes a cell death-related nuclease, homologous to the 100 kDa polymyositis/scleroderma autoantigen (PM/Scl-100), that is required for normal levels of DNA degradation during apoptosis; PM/Scl-100 is a ribonuclease component of the multiexonuclease exosome complex, which processes or degrades several types of RNAs in yeast; crn-3(RNAi) animals show retarded growth and a low penetrance of embryonic lethality; CRN-3 promotes both DNA degradation and cell corpse engulfment, in a partially redundant pathway that includes CRN-2 but is parallel to CPS-6; CRN-3 is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C16A3.4 Aff_C16A3.4 P W All gene names: C16A3.4; 3H473; CE04004; WBGene00015809; WP:CE04004
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig5 conserved                            
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C16C10.6 Aff_C16C10.6 P W All gene names: C16C10.6; 3F258; CE01497; WBGene00007627; WP:CE01497
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, Romagnolo et al                               
                                              2002  Fig3b others, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C17C3.8 Aff_C17C3.8 P W All gene names: hlh-26; C17C3.8; 2F822; CE04028; NM_062661; WBGene00001965; WP:CE04028
C17E4.6 Aff_C17E4.8 P W All gene names: C17E4.6; 1K7; CE25780; WBGene00007645; WP:CE25780 WormBase description: YL-1 protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

C18D11.4 Aff_C18D11.4 P W All gene names: rsp-8; C18D11.4; C18D11.4.1; C18D11.4.2; 3M919; CE18515; NM_067132; WBGene00004705; WP:CE18515 WormBase description: RNA recognition motif. (aka RRM, RBD, or RNP domain)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C24H11.3 Aff_C24H11.3 P W All gene names: tbx-38; C24H11.3; 3M874; CE18526; NM_067125; WBGene00006557; WP:CE18526 WormBase description: T-box
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories                                                          

C27A12.6 Aff_C27A12.6 P W All gene names: C27A12.6; 1G630; CE08415; WBGene00016156; WP:CE08415
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C27A12.7 Aff_C27A12.7 P W All gene names: C27A12.7; C27A12.7a.1; C27A12.7a.2; C27A12.7b.1; C27A12.7b.2; C27A12.7b.3; C27A12.7b.4; C27A12.7b.5; C27A12.7b.6; 1G634; CE08416; CE32810; WBGene00016157; WP:CE08416; WP:CE32810
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

C27B7.4 Aff_C27B7.4 P W All gene names: C27B7.4; 4J665; CE17477; WBGene00007761; WP:CE17477 WormBase description: DNA repair protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

C27C7.7 Aff_C27C7.7 P W All gene names: C27C7.7; 1M11; CE18537; WBGene00007769; WP:CE18537
C28H8.1 Aff_C28H8.1 P W All gene names: C28H8.1; 3H17; CE01820; WBGene00016192; WP:CE01820 WormBase description: C28H8.1 is orthologous to the human gene BCL7A (OMIM:601406), which when mutated leads to high-grade B-cell non-Hodgkin lymphoma.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, IVb male soma enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C30G4.3 Aff_C30G4.3 P W All gene names: gcy-11; C30G4.3; CE39901; NM_078354; WBGene00001537; WP:CE39901; XR660 WormBase description: guanylate cyclase receptor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C30H7.2 Aff_C30H7.2 P W All gene names: C30H7.2; C30H7.2a.1; C30H7.2a.2; C30H7.2a.3; C30H7.2a.4; 1F986; CE27807; CE39231; WBGene00016278; WP:CE27807; WP:CE39231
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

C35D10.13 Aff_C35D10.13 P W All gene names: C35D10.13; 3F966; CE01194; WBGene00016449; WP:CE01194
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, fem1 enriched                               
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C35D6.3 Aff_C35D6.3 P W All gene names: C35D6.3; 4R99; CE15682; WBGene00007960; WP:CE15682
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C36E8.1 Aff_C36E8.1 P W All gene names: C36E8.1; C36E8.1.1; C36E8.1.2; 3F90; CE00909; WBGene00007980; WP:CE00909
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C41D11.7 Aff_C41D11.7 P W All gene names: C41D11.7; 1F20; CE36108; WBGene00016566; WP:CE36108 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

C41G7.3 Aff_C41G7.3 P W All gene names: C41G7.3; 1K94; CE08667; WBGene00008061; WP:CE08667
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C44F1.3 Aff_C44F1.3 P W All gene names: lec-4; C44F1.3; 3E862; CE02163; NM_065362; WBGene00002267; WP:CE02163 WormBase description: lec-4 encodes a predicted galectin that exhibits sugar binding properties in vitro. WormBase CDS description: galactoside binding lectin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C46F11.4 Aff_C46F11.4 P W All gene names: C46F11.4; C46F11.4.1; C46F11.4.2; 3E748; CE17559; WBGene00008119; WP:CE17559 WormBase description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen                                                                                

C47E8.4 Aff_C47E8.4 P W All gene names: C47E8.4; 5P164; CE35838; WBGene00008143; WP:CE35838
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C47F8.1 Aff_C47F8.1 P W All gene names: C47F8.1; 1M929; CE17570; WBGene00008157; WP:CE17570 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C48E7.2 Aff_C48E7.2 P W All gene names: C48E7.2; 1G833; CE08817; WBGene00016750; WP:CE08817
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Romagnolo et al 2002  Fig3b                                  
                                              Protein Synthesis                                                                  

C54G7.4 Aff_C54G7.4 P W All gene names: C54G7.4; CE37621; WBGene00016935; WP:CE37621; XG166
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

D1081.6 Aff_D1081.6 P W All gene names: D1081.6; 1J54; CE05538; WBGene00008384; WP:CE05538
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E                                                   

D2005.5 Aff_D2005.5 P W All gene names: drh-3; ekl-3; D2005.5; 1I401; CE36120; WBGene00008400; WP:CE36120 WormBase description: RNA helicase like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Romagnolo et al 2002  Fig3b                                   
                                              Metabolism, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol                                                                        

E01A2.2 Aff_E01A2.H P W All gene names: E01A2.2; E01A2.2b.1; E01A2.2b.2; 1E703; CE20643; CE33369; WBGene00017085; WP:CE20643; WP:CE33369
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen                                        

E01A2.4 Aff_E01A2.F P W All gene names: E01A2.4; 1E698; CE24871; WBGene00017086; WP:CE24871
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated                                                      

E01G4.5 Aff_E01G4.5 P W All gene names: E01G4.5; 2N763; CE23623; WBGene00008447; WP:CE23623
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, IVb                              
                                              male soma enriched genes, Reinke et al 2004, GO                                    
                                              categories, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

F10G2.4 Aff_F10G2.4 P W All gene names: F10G2.4; 5H805; CE09332; WBGene00017365; WP:CE09332
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

F13B12.1 Aff_F13B12.1 P W All gene names: F13B12.1; F13B12.1.1; F13B12.1.2; 4L188; CE05599; WBGene00008729; WP:CE05599
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F13E9.6 Aff_F13E9.6 P W All gene names: sdz-13; F13E9.6; 4L642; CE05608; WBGene00008755; WP:CE05608
F15B10.2 Aff_F15B10.2 P W All gene names: drh-1; F15B10.2; F15B10.2.1; F15B10.2.2; 4H372; CE16988; NM_068617; WBGene00001090; WP:CE16988 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen                                                                       

F17E9.13 Aff_F35H10.1 P W All gene names: his-33; F17E9.13; 4J100; NM_069007; WBGene00001907 WormBase description: his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F18A1.5 Aff_F18A1.5 P W All gene names: F18A1.5; F18A1.5.1; F18A1.5.2; 2H955; CE04405; WBGene00017546; WP:CE04405 WormBase description: F18A1.5 encodes the C. elegans ortholog of the replication protein A (RPA) large subunit; by homology, the F18A1.5 gene product is predicted to function as a DNA binding and oligonucleotide oligosaccharide binding (OB) protein that is required for DNA replication, repair, and recombination; large-scale RNAi screens indicate that the product of F18A1.5 is essential for embryonic development, and that in yeast two-hybrid assays interacts with the product of M04F3.1, the RPA medium subunit; in situ hybridization studies indicate that F18A1.5 transcripts are expressed in germ cells. WormBase CDS description: replication factor A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, GO categories,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F19F10.9 Aff_F19F10.9 P W All gene names: F19F10.9; 5I52; CE27372; WBGene00017605; WP:CE27372 WormBase description: The F19F10.9 gene encodes a homolog of the human SART1 gene, which encodes a protein recognised by IgE that may be involved in atopic disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F23C8.6 Aff_F23C8.F P W All gene names: phi-24; F23C8.6; F23C8.F; 1C988; CE20715; WBGene00017735; WP:CE20715
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F23H11.1 Aff_F23H11.1 P W All gene names: bra-2; tag-285; F23H11.1; 3B529; CE09609; NM_064891; WBGene00017757; WP:CE09609 WormBase description: The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

F23H11.5 Aff_F23H11.5 P W All gene names: F23H11.5; F23H11.5.1; F23H11.5.2; F23H11.5.3; 3B528; CE09613; WBGene00000263; WP:CE09613 WormBase description: The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F25B3.6 Aff_F25B3.6 P W All gene names: F25B3.6; 5K60; CE09619; WBGene00009103; WP:CE09619
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F26A3.7 Aff_F26A3.7 P W All gene names: F26A3.7; 1I250; CE09672; WBGene00009145; WP:CE09672
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F26A3.8 Aff_F26A3.3 P W All gene names: rrf-1; F26A3.8; 1I220; CE27141; NM_059730; WBGene00004508; WP:CE27141 WormBase description: rrf-1 encodes an RNA-directed RNA polymerase (RdRP) homolog required for somatic (but not germline) RNAi; RRF-1 is also required for 'transitive interference'.
F26F4.10 Aff_F26F4.10 P W All gene names: rrt-1; F26F4.10; F26F4.10a.1; F26F4.10a.2; F26F4.10b.1; F26F4.10b.2; 3G4; CE29495; CE37225; WBGene00004679; WP:CE29495; WP:CE37225 WormBase description: rrt-1 encodes an arginyl-tRNA synthetase that affects embryonic viability and fertility
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F31E9.4 Aff_F31E9.4 P W All gene names: sdz-16; F31E9.4; 5R806; CE15938; WBGene00009297; WP:CE15938 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F32H2.4 Aff_F32H2.4 P W All gene names: F32H2.4; 1J547; CE28927; WBGene00009341; WP:CE28927 WormBase description: WD domain, G-beta repeat (3 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F35G12.9 Aff_F35G12.9 P W All gene names: apc-11; F35G12.9; 3F684; CE00978; NM_065536; WBGene00000145; WP:CE00978 WormBase description: apc-11 encodes a predicted key catalytic subunit of the anaphase promoting complex that is required for embryonic development past the embryonic one- cell stage. WormBase CDS description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F36A2.2 Aff_F36A2.2 P W All gene names: F36A2.2; 1J378; CE09942; WBGene00009452; WP:CE09942 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Yeast protein 8248 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F37C12.1 Aff_F37C12.1 P W All gene names: F37C12.1; 3I277; CE00742; WBGene00018149; WP:CE00742
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F37E3.1 Aff_F37E3.1 P W All gene names: F37E3.1; 1H1; CE29793; WBGene00018156; WP:CE29793 WormBase description: CAP-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F40G9.9 Aff_F40G9.9 P W All gene names: F40G9.9; 3A784; CE32413; WBGene00018245; WP:CE32413 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F41B4.3 Aff_F41B4.3 P W All gene names: F41B4.3; CE07213; WBGene00018259; WP:CE07213; XH454
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F43E2.2 Aff_F43E2.2 P W All gene names: F43E2.2; 2H665; CE28327; WBGene00018391; WP:CE28327
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F43G9.10 Aff_F43G9.10 P W All gene names: F43G9.10; 1J216; CE10372; WBGene00009671; WP:CE10372 WormBase description: MICROFIBRILLAR-ASSOCIATED PROTEIN 1 (ASSOCIATED MICROFIBRIL PROTEIN) (AMF)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Romagnolo                             
                                              et al 2002  Fig3b Cell Structure, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F44F1.4 Aff_F44F1.4 P W All gene names: F44F1.4; 1N856; CE10418; WBGene00009696; WP:CE10418
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F44F1.5 Aff_F44F1.5 P W All gene names: F44F1.5; 1N848; CE10420; WBGene00009697; WP:CE10420
F45C12.11 Aff_F45C12.11 P W All gene names: bath-32; sdz-18; F45C12.11; 2B994; CE10456; WBGene00018442; WP:CE10456
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45D3.1 Aff_F45D3.1 P W All gene names: F45D3.1; 5N7; CE10468; WBGene00009721; WP:CE10468
F47D12.6 Aff_F47D12.6 P W All gene names: F47D12.6; 3H376; CE01950; WBGene00018562; WP:CE01950
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S3  genes pass one-way ANOVA, Wang et al 2003  S4                                 
                                              genes pass two-wayANOVA P0                                                         

F49C12.11 Aff_F49C12.11 P W All gene names: F49C12.11; F49C12.11.1; F49C12.11.2; 4K83; CE03371; WBGene00009880; WP:CE03371
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F53A2.6 Aff_F53A2.6 P W All gene names: ife-1; F53A2.6; F53A2.6.1; F53A2.6.2; F53A2.6.3; 3O433; CE31809; NM_067350; WBGene00002059; WP:CE31809 WormBase description: The ife-1 gene encodes one of five C. elegans homologs of the mRNA cap-binding protein eIF4E; it is specifically required for spermatogenesis, and is expressed in P granules. WormBase CDS description: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (EIF-4E) (EIF4E) (MRNA CAP-BINDING PROTEIN) (EIF-4F 25 KD SUBUNIT)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, GO                                      
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

F53B3.1 Aff_F53B3.1 P W All gene names: F53B3.1; CE28444; WBGene00018740; WP:CE28444; XD472
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F53B7.3 Aff_F53B7.3 P W All gene names: F53B7.3; 5L480; CE05922; WBGene00009966; WP:CE05922
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F53F8.3 Aff_F53F8.3 P W All gene names: F53F8.3; 5V158; CE17857; WBGene00010000; WP:CE17857 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F54E12.4 Aff_F54E12.4 P W All gene names: his-58; F54E12.4; 4M104; NM_069739; WBGene00001932 WormBase description: his-58 encodes an H2B histone. WormBase CDS description: histone H2B
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Zhang et al 2002, T1 mec-3 dependent genes                              

F54E7.5 Aff_F54E7.5 P W All gene names: sdz-21; F54E7.5; 3G744; CE01316; WBGene00018828; WP:CE01316
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F55B11.1 Aff_F55B11.1 P W All gene names: F55B11.1; 4P166; CE16116; WBGene00010083; WP:CE16116 WormBase description: The F55B11.1 gene encodes an ortholog of the human gene XANTHINE DEHYDROGENASE (XDH), which when mutated leads to xanthinuria (OMIM:278300). WormBase CDS description: xanthine dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F55C5.4 Aff_F55C5.4 P W All gene names: F55C5.4; 5M755; CE11156; WBGene00010093; WP:CE11156
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

F55C9.1 Aff_F55C9.1 P W All gene names: fbxb-117; F55C9.1; 5T759; CE18733; WBGene00010099; WP:CE18733 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55C9.7 Aff_F55C9.7, Aff_Y116F11.F P W All gene names: fbxb-60; F55C9.7; 5T771; CE18739; WBGene00010104; WP:CE18739 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F55G1.10 Aff_F55G1.10 P W All gene names: his-61; F55G1.10; 4I250; NM_068800; WBGene00001935 WormBase description: his-61 encodes an H2A histone. WormBase CDS description: Histone
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56A4.12 Aff_F56A4.A P W All gene names: F56A4.12; 5C954; CE25010; WBGene00018920; WP:CE25010
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56A6.4 Aff_F56A6.4 P W All gene names: F56A6.4; 1B88; CE34319; WBGene00018923; WP:CE34319
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F56A8.4 Aff_F56A8.4 P W All gene names: F56A8.4; 3O353; CE16124; WBGene00010140; WP:CE16124
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, intrinsic, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, Wang et al 2003  S7 SAGE genes in                              
                                              the dataset, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit                                                                         

F57B10.11 Aff_F57B10.11 P W All gene names: bag-1; F57B10.11; 1H140; CE11318; NM_059492; WBGene00000236; WP:CE11318 WormBase description: A homolog of the human BAG-family of co-chaperone proteins, negatively regulates Hsp70 and affects cell stress and cell growth.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F57C9.4 Aff_F57C9.4 P W All gene names: F57C9.4; 1F403; CE28474; CE28475; WBGene00019011; WP:CE28474; WP:CE28475
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004, wt                             
                                              vs glp-4 enriched genes, Reinke et al 2004, oogenesis                              
                                              enriched genes, Reinke et al 2004, wt herm vs wt male                              
                                              enriched gen                                                                       

F57F5.4 Aff_F57F5.4 P W All gene names: add-2; F57F5.4; F57F5.4.1; F57F5.4.2; 5M490; CE06002; NM_073612; WBGene00000073; WP:CE06002 WormBase description: add-2 encodes a protein containing an alpha-adducin-like head domain that while highly similar in sequence to the head domain of vertebrate and Drosophila adducins, atypically resides at the C-, rather than N-, terminus of the protein; by homology, ADD-2 is predicted to be a cell membrane-associated cytoskeletal protein that mediates cytoskeletal rearrangements in response to activation of signal transduction cascades; as loss of add-2 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of ADD-2 in C. elegans development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F58E10.7 Aff_F58E10.7 P W All gene names: F58E10.7; 5O473; CE18789; WBGene00010262; WP:CE18789
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Romagnolo et al 2002  Fig3b Unkown,                                
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

F59A6.6 Aff_F59A6.6 P W All gene names: rnh-1; F59A6.6; F59A6.6b.1; F59A6.6b.2; 2F287; CE33406; CE33659; NM_062519; NM_182182; WBGene00004382; WP:CE33406; WP:CE33659 WormBase description: rnh-1 encodes a putative RNAse H that is predicted, by phylogenetic profiling, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F59E10.2 Aff_F59E10.2 P W All gene names: cyn-4; cyp-4; mog-6; F59E10.2; 2L162; CE01596; NM_063936; WBGene00000880; WP:CE01596 WormBase description: cyp-4 encodes a peptidyl-propyl cis-trans isomerase of the cyclophilin family that is required for sexual differentiation of germ cells in hermaphrodites and affects body-wall muscle cell development; expression is most abundant in early larval stages and is observed exclusively in body- wall striated muscle cells. WormBase CDS description: cyclophilin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              others, ViswanathanM et al 2005  S2 daf-16 Resveratrol                             

H38K22.1 Aff_H38K22.1 P W All gene names: evl-14; H38K22.1; 3F394; CE33526; NM_065464; WBGene00001352; WP:CE33526 WormBase description: evl-14 encodes a homolog of the yeast sister cohesion protein Pds5p that functions during both mitosis and meiosis and is implicated in the maintenance of sister chromatid cohesion in late prophase, and affects vulval morphology, meiotic germline development, embryonic and larval viability, fertility, and cell divisions in the germ line as well as in vulval and somatic gonad lineages; some of the defects, such as somatic gonad defects, are due at least partially to cell division defects.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

K02B12.8 Aff_K02B12.8 P W All gene names: zhp-3; K02B12.8; 1J106; CE34201; NM_059910; WBGene00006976; WP:CE34201
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E                                                   

K04G7.11 Aff_K04G7.11, Aff_K04G7.12 P W All gene names: K04G7.11; 3I250; CE39587; WBGene00019402; WP:CE39587
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

K06G5.2 Aff_K06G5.2 P W All gene names: cyp-13B2; K06G5.2; CE37720; NM_077968; WBGene00010606; WP:CE37720; XO845 WormBase description: Cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, GO                                  
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E                                                                                  

K07A1.11 Aff_K07A1.11 P W All gene names: rba-1; K07A1.11; 1K194; CE11860; NM_060150; WBGene00004312; WP:CE11860 WormBase description: retinablastoma-binding protein RBAP46 like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

K08B5.1 Aff_K08B5.1 P W All gene names: K08B5.1; CE35740; WBGene00019518; WP:CE35740; XR175
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K08D10.8 Aff_K08D10.8 P W All gene names: K08D10.8; K08D10.8.1; K08D10.8.2; 4E929; CE07360; WBGene00019531; WP:CE07360 WormBase description: K08D10.7 encodes a homolog of human scramblase (PLSCR1; OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis; a close paralog of K08D10.8 is K08D10.7, and other paralogs include F46A8.9, F46A8.10, and Y50E8A.9> Exposure of phosphatidylserine on the surface of apoptotic cells occurs because of a phospholipid scramblase and inactivation of an aminophospolipid translocase that would normally keep the PS on the interior of the cell; by virtue of its similarity to mammalian scramblase, K08D10.8 may promote clearage of apoptotic cells by phagocytosis.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

K08H10.4 Aff_K08H10.4 P W All gene names: uda-1; K08H10.4; K08H10.4.1; K08H10.4.2; 5K487; CE18877; NM_073172; WBGene00010697; WP:CE18877 WormBase description: GDA1/CD39 (nucleoside phosphatase) family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

M03C11.7 Aff_M03C11.7 P W All gene names: M03C11.7; M03C11.7.1; M03C11.7.2; 3L514; CE03498; WBGene00010844; WP:CE03498
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

M03F8.3 Aff_M03F8.3 P W All gene names: phi-12; M03F8.3; 5G423; CE28622; WBGene00019762; WP:CE28622
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R02D3.2 Aff_R02D3.2 P W All gene names: cogc-8; R02D3.2; 4A995; CE18096; WBGene00019820; WP:CE18096
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R02D3.3 Aff_R02D3.3 P W All gene names: R02D3.3; R02D3.3.1; R02D3.3.2; 4A980; CE36601; WBGene00019821; WP:CE36601
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R02D3.4 Aff_R02D3.4 P W All gene names: R02D3.4; 4A986; CE18098; WBGene00019822; WP:CE18098
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R05D11.7 Aff_R05D11.7 P W All gene names: R05D11.7; 1J179; CE06242; WBGene00011035; WP:CE06242
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

R05D11.9 Aff_R05D11.5 P W All gene names: R05D11.9; 1J171; CE32474; WBGene00011037; WP:CE32474
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

R07C3.8 Aff_R07C3.8 P W All gene names: R07C3.8; 2B205; CE12536; WBGene00019924; WP:CE12536
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R07C3.9 Aff_R07C3.9 P W All gene names: R07C3.9; 2B203; CE12538; WBGene00019925; WP:CE12538
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R119.6 Aff_R119.6 P W All gene names: taf-4; R119.6; 1A861; CE39613; NM_058327; WBGene00006385; WP:CE39613 WormBase description: taf-4 encodes a TAFII (TBP(TATA-binding protein)-associated factor) that is orthologous to human TAF4 (hTAFII130); TAF-4 is predicted to be a component of the TFIID mRNA transcription complex and is generally required for early embryonic mRNA transcription; consistent with this observation, taf-4(RNAi) results in embryonic lethality at the ~100-cell stage with little cell differentiation, similar to the loss of AMA-1/RNA polymerase II activity; TAF-4 is detected in nuclei in the adult germline, oocytes, and embryo, from the 2-cell stage through early morphogenesis.
R17.1 Aff_R17.1 P W All gene names: fbxb-85; R17.1; 3L936; CE16314; WBGene00011267; WP:CE16314 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R53.5 Aff_R53.5 P W All gene names: R53.5; 2K260; CE03575; WBGene00011274; WP:CE03575
T01C3.8 Aff_T01C3.8 P W All gene names: T01C3.8; 5P483; CE23936; WBGene00011323; WP:CE23936
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated                                                   

T01H3.2 Aff_T01H3.2 P W All gene names: T01H3.2; 2I166; CE23938; WBGene00011348; WP:CE23938
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T01H3.3 Aff_T01H3.3 P W All gene names: T01H3.3; T01H3.3.1; T01H3.3.2; 2I162; CE03597; WBGene00011349; WP:CE03597 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

T07C4.4 Aff_T07C4.4 P W All gene names: spp-1; T07C4.4; T07C4.4.1; T07C4.4.2; 3L444; CE35363; NM_066889; WBGene00004986; WP:CE35363 WormBase description: spp-1 encodes a predicted transmembrane protein containing a saposin (B) domain that is a member of a saposin-like protein superfamily containing mammalian NK-lysin and granulysin and the protozoan amoebapores; SPP-1 is predicted to function as a lipid-binding protein with cytotoxic, pore-forming activity, and in vitro, does exhibit antibacterial activity; loss of SPP-1 function via RNA-mediated interference (RNAi) does not, however, result in any abnormalities.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T07F10.3 Aff_T07F10.3 P W All gene names: T07F10.3; 5N348; CE06396; WBGene00011589; WP:CE06396 WormBase description: polyadenylate-binding protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T08B2.5 Aff_T08B2.5 P W All gene names: T08B2.5; 1G795; CE13429; CE25984; CE26949; CE30298; CE33171; CE33172; CE38728; WBGene00020346; WP:CE13429; WP:CE25984; WP:CE26949; WP:CE30298; WP:CE33171; WP:CE33172; WP:CE38728
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T08G5.3 Aff_T08G5.3 P W All gene names: T08G5.3; 5O506; CE18945; WBGene00011624; WP:CE18945
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T20F5.3 Aff_T20F5.3 P W All gene names: T20F5.3; 1E478; CE13820; WBGene00020625; WP:CE13820
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

T21C9.4 Aff_T21C9.4 P W All gene names: T21C9.4; 5L58; CE06473; WBGene00011892; WP:CE06473 WormBase description: Enhancer of rudimentary
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

T22B2.1 Aff_T22B2.1 P W All gene names: T22B2.1; CE13928; WBGene00020665; WP:CE13928; XE545
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T22C8.4 Aff_T22C8.4 P W All gene names: T22C8.4; 2I914; CE36510; WBGene00011925; WP:CE36510 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T22F3.4 Aff_T22F3.4 P W All gene names: rpl-11.1; T22F3.4; T22F3.4.1; T22F3.4.2; 5E64; CE13968; NM_071607; WBGene00004422; WP:CE13968 WormBase description: rpl-11.1 encodes a large ribosomal subunit L11 protein. WormBase CDS description: 60S ribososmal protein L11
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig5                                    
                                              conserved w/ yeast, Reinke et al 2004, Fig2b shared                                
                                              gemlines, Reinke et al 2004, IVb male soma enriched                                
                                              genes, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

T23G11.4 Aff_T23G11.4 P W All gene names: T23G11.4; 1I271; CE14098; WBGene00011969; WP:CE14098
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T23G7.3 Aff_T23G7.3 P W All gene names: T23G7.3; 2J456; CE03704; WBGene00011966; WP:CE03704
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, Reinke et al 2004, wt herm vs wt                                
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

T24H7.2 Aff_T24H7.2 P W All gene names: T24H7.2; T24H7.2.1; T24H7.2.2; 2G539; CE02884; WBGene00020781; WP:CE02884 WormBase description: T24H7.2 encodes an ortholog of hypoxia-upregulated vertebrate proteins such as human HYOU1; T24H7.2, its C. elegans paralog T14G8.3, and HYOU1 are ER resident hsp70 family molecular chaperone homologs; the grp (glucose regulated protein) 170 family is a collection of related large hsp70 chaperones confined to the ER; members of this family are present in all eukaryotes, participating in a wide range of cellular functions.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002 Aging time course                                 
                                              Fig2C heatshock, McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig2a heat                             
                                              shock, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T26E3.5 Aff_T26E3.5 P W All gene names: T26E3.5; 1N254; CE14192; WBGene00012038; WP:CE14192 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

W06D11.2 Aff_W06D11.2 P W All gene names: W06D11.2; CE06553; WBGene00012300; WP:CE06553; XM914
W06D4.4 Aff_T06D10.B P W All gene names: W06D4.4; W06D4.4.1; W06D4.4.2; 1J638; CE16546; WBGene00012298; WP:CE16546
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

W08D2.7 Aff_W08D2.7 P W All gene names: W08D2.7; 4K593; CE06562; WBGene00012342; WP:CE06562 WormBase description: Human myeloid cell line protein 2 like
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig5 conserved w/ yeast,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, GO categories,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y105E8B.6 Aff_Y105E8A.M P W All gene names: Y105E8B.6; 1P255; CE24100; WBGene00013691; WP:CE24100
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y106G6E.5 Aff_Y106G6E.5 P W All gene names: ced-12; mig-16; Y106G6E.5; Y106G6E.5.1; Y106G6E.5.2; 1K800; CE27228; NM_060292; WBGene00000426; WP:CE27228 WormBase description: ced-12 is required both for phagocytotic engulfment of dying (apoptotic) cells, and for normal migrations of healthy cells during development.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y113G7A.4 Aff_Y113G7A.O P W All gene names: ncx-1; Y113G7A.4; 5U576; CE23275; NM_075478; WBGene00003566; WP:CE23275
Y116A8C.22 Aff_Y116A8A.D P W All gene names: Y116A8C.22; 4R990; CE23331; WBGene00013799; WP:CE23331
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y32H12A.2 Aff_Y32H12A_56.A, Aff_ZK121.A P W All gene names: Y32H12A.2; Y32H12A.2.1; Y32H12A.2.2; Y32H12A_56.A; 3G436; CE24199; WBGene00021311; WP:CE24199
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y37E11AM.1 Aff_Y37E11A_93.F P W All gene names: Y37E11AM.1; 4E499; CE33853; WBGene00021365; WP:CE33853 WormBase description: The Y37E11AM.1 gene encodes a DEAH helicase orthologous to the Drosophila CG12211 protein.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y38C1AA.2 Aff_Y38C1_90.A P W All gene names: csn-3; Y38C1AA.2; 4A955; CE33861; NM_067477; WBGene00000815; WP:CE33861 WormBase description: csn-3 encodes a subunit ortholog of the eukaryotic COP9/signalosome complex which promotes deneddylation of CUL-3 and is involved in the degradation of the microtubule-severing Katanin-like protein MEI-1 during mitosis; RNA interference of csn-3 results in spindle orientation and cytokinesis defects in the embryo.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y39A1A.16 Aff_Y39A1A.16 P W All gene names: Y39A1A.16; 3L769; CE19136; WBGene00012654; WP:CE19136 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y43F11A.1 Aff_Y43F11.A P W All gene names: Y43F11A.1; 2M402; CE21916; WBGene00012841; WP:CE21916
Y44E3A.3 Aff_Y44E3A.E P W All gene names: Y44E3A.3; Y44E3A.E; 1D888; CE21928; WBGene00021548; WP:CE21928 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y46H3A.1 Aff_Y32G9B_366.D P W All gene names: srt-42; Y46H3A.1; 5C285; CE35804; CE38004; WBGene00021599; WP:CE35804; WP:CE38004 WormBase description: 7TM chemoreceptor, srt family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y47G6A.14 Aff_Y47G6A_242.B P W All gene names: Y47G6A.14; 1E30; CE34401; WBGene00021640; WP:CE34401 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Romagnolo et al 2002  Fig3b Unkown                                  

Y47G6A.20 Aff_Y47G6A_245.G P W All gene names: rnp-6; Y47G6A.20; 1E108; CE24365; CE24366; CE31375; NM_058775; NM_058776; NM_170843; WBGene00004389; WP:CE24365; WP:CE24366; WP:CE31375 WormBase description: rnp-6 encodes an ortholog of HALF-PINT in D. melanogaster and FBP Interacting Repressor (FIR)/PUF60 in mammals, predicted to be involved in mRNA splicing regulation, mRNA localization, or transcriptional regulation via TFIIH.
Y51H7BR.2 Aff_Y51H7B_6.B P W All gene names: fbxb-43; Y51H7BR.2; 2B827; CE22356; WBGene00021774; WP:CE22356
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes                                                   

Y57A10B.6 Aff_Y57A10B.6 P W All gene names: Y57A10B.6; 2M681; CE20327; WBGene00013278; WP:CE20327
Y57G7A.2 Aff_Y57G7A.2 P W All gene names: Y57G7A.2; 2B587; CE19631; WBGene00021966; WP:CE19631
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y59A8B.6 Aff_Y59A8A.M P W All gene names: Y59A8A.M; Y59A8B.6; Y59A8B.6.1; Y59A8B.6.2; 5S521; CE28858; WBGene00013343; WP:CE28858
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

Y6D1A.1 Aff_Y6D1A.C P W All gene names: Y6D1A.1; 2M112; CE21324; WBGene00012395; WP:CE21324
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y71A12B.3 Aff_Y71A12B.M, Aff_Y71A12B.N P W All gene names: Y71A12B.3; 1O485; WBGene00013501
Y71D11A.2 Aff_Y71D11A.D P W All gene names: smr-1; Y71D11A.2; 3C233; CE24602; CE34424; WBGene00004891; WP:CE24602; WP:CE34424
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y71G12B.8 Aff_Y71G12A_203.C P W All gene names: Y71G12B.8; 1C263; CE27030; WBGene00022148; WP:CE27030
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

Y73C8C.3 Aff_Y73C8C.3 P W All gene names: Y73C8C.3; 5D597; CE20359; WBGene00022262; WP:CE20359
Y73F8A.13 Aff_Y73F8A.L P W All gene names: Y73F8A.13; 4Q79; CE36251; WBGene00013522; WP:CE36251
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y82E9BL.2 Aff_Y119D3_465.D P W All gene names: Y82E9BL.2; 3C442; CE23418; WBGene00022319; WP:CE23418
Y82E9BL.3 Aff_Y119D3_465.E P W All gene names: Y82E9BL.3; 3C440; CE23419; WBGene00022320; WP:CE23419
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y82E9BL.5 Aff_Y119D3_465.F P W All gene names: Y82E9BL.5; 3C436; CE27547; WBGene00022322; WP:CE27547
Y82E9BR.16 Aff_Y119D3_446.B P W All gene names: Y82E9BR.16; 3C510; CE23368; CE27040; WBGene00022348; WP:CE23368; WP:CE27040
Y87G2A.6 Aff_Y87G2A.K P W All gene names: cyn-15; cyp-15; Y87G2A.6; Y87G2A.6.1; Y87G2A.6.2; 1O158; CE24686; NM_060977; WBGene00000891; WP:CE24686 WormBase description: cyp-15 encodes a little-characterized cyclophilin homolog. WormBase CDS description: cyclophilin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

Y9C9A.13 Aff_Y9C9A_54.B P W All gene names: Y9C9A.13; 4F722; CE25647; WBGene00021180; WP:CE25647
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC204.7 Aff_ZC204.7 P W All gene names: fbxb-15; ZC204.7; 2B942; CE29615; WBGene00022557; WP:CE29615
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma                                     

ZC262.2 Aff_ZC262.2 P W All gene names: ZC262.2; 3J421; CE00350; CE33010; WBGene00022579; WP:CE00350; WP:CE33010
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

ZC262.3 Aff_ZC262.3 P W All gene names: ZC262.3; 3J416; CE27345; CE29616; WBGene00022580; WP:CE27345; WP:CE29616 WormBase description: N-CAM IG domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

ZC328.4 Aff_ZC328.4 P W All gene names: san-1; ZC328.4; 1G985; CE34445; NM_059445; WBGene00004721; WP:CE34445
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

ZK1098.1 Aff_ZK1098.1 P W All gene names: ZK1098.1; 3K613; CE03847; WBGene00014218; WP:CE03847 WormBase description: ZK1098.1 encodes a protein, with multiple WW/rsp5/WWP domains and FF domains, required for embryonic viability and for normally high rates of postembryonic growth. WormBase CDS description: WW/rsp5/WWP domain containing proteins (2 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

ZK546.14 Aff_ZK546.14 P W All gene names: ZK546.14; ZK546.14a.1; ZK546.14a.2; ZK546.14b.1; ZK546.14b.2; 2F234; CE02914; CE33503; WBGene00022765; WP:CE02914; WP:CE33503
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Romagnolo et al 2002  Fig3b Cell                             
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

ZK686.4 Aff_ZK686.4 P W All gene names: ZK686.4; 3I860; CE00458; WBGene00022794; WP:CE00458
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

ZK856.8 Aff_ZK856.8 P W All gene names: ZK856.8; ZK856.8.1; ZK856.8.2; 5K682; CE06665; WBGene00014109; WP:CE06665 WormBase description: EF-hand calcium binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph