Hill et al 2000, developmentally modulated cluster, 152 genes

Gene list file name:Hill2000_T1_cluster5-1.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,1)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

Aff_BIOB3 Aff_BIOB3 P W
AFF_C01F6.3 Aff_C01F6.3 P W
AFF_F21H12.1 Aff_F21H12.1 P W
AFF_ZK783.4 Aff_ZK783.4 P W
B0285.5 Aff_B0285.5 P W All gene names: hse-5; B0285.5; 3F435; CE36681; NM_065475; WBGene00002003; WP:CE36681 WormBase description: hse-5 encodes a D-glucuronyl C5-epimerase.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

B0336.3 Aff_B0336.3 P W All gene names: B0336.3; 3G803; CE29542; WBGene00015143; WP:CE29542
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

B0523.5 Aff_B0523.5 P W All gene names: CE-FLI-1; ach-1; fli-1; B0523.5; 3J768; CE36522; NM_066512; WBGene00001443; WP:CE36522 WormBase description: fli-1 encodes a homolog of Drosophila flightless-I; can interact with human Ha-Ras and human actin in vitro; mRNA levels are highest in embryos.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C02F5.1 Aff_C02F5.1 P W All gene names: knl-1; C02F5.1; 3J343; CE02450; NM_066410; WBGene00002231; WP:CE02450 WormBase description: knl-1 encodes a novel acidic protein with a coiled-coil region at its C-terminus; KNL-1 is an essential kinetochore component that is required for proper spindle elongation and chromosome separation, and in the kinetochore assembly pathway, plays a key role in linking the initiation of kinetochore formation with the construction of a functional microtubule-binding interface; in the assembly pathway, KNL-1 functions downstream of the DNA-proximal kinetochore components CeCENP-A/HCP-3 and CeCENP-B/HCP-4 and upstream of the outer kinetochore components HIM-10/Nuf2p, NDC-80/HEC1, CeBUB-1, HCP-1, and CeCLASP2/CLS-2; in expression studies in the one-cell embryo, KNL-1 localizes to kinetochores throughout mitosis.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C04F12.3 Aff_C04F12.3 P W All gene names: ikb-1; C04F12.3; 1K263; CE19676; NM_060174; WBGene00002069; WP:CE19676 WormBase description: ikb-1 encodes an ortholog of human BCL3 (OMIM:109560) that physically interacts with the checkpoint protein MRT-2; ikb-1(nr2019) and ikb-1(nr2027) mutants display no obvious phenotype other than shortened lifespan; mutation of BCL3 is frequently associated with recurring translocations found in the neoplastic cells of patients with chronic lymphocytic leukemia, and has been implicated in cell cycle control (perhaps via apoptosis). WormBase CDS description: Ank repeat
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Reinke et al 2004, list of genes in                              
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

C06A5.7 Aff_C06A5.7 P W All gene names: tmd-1; C06A5.7; 1G570; CE29023; CE29024; NM_059333; NM_059334; WBGene00006581; WP:CE29023; WP:CE29024 WormBase description: tmd-1 encodes a predicted member of the tropomodulin family and affects egg laying, locomotion, and muscle organization in one analysis using RNAi.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C07G1.4 Aff_C07G1.4 P W All gene names: wsp-1; C07G1.4; 4I954; CE32572; CE32573; NM_171393; NM_171394; WBGene00006957; WP:CE32572; WP:CE32573 WormBase description: wsp-1 encodes a homolog of human WASP that interacts with Arp2/3 and is required for hypodermal cell migration during morphogenesis (ventral enclosure); when mutated, human WASP leads to Wiskott-Aldrich syndrome (OMIM:301000).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C11E4.6 Aff_C11E4.6 P W All gene names: C11E4.6; CE31411; WBGene00007520; WP:CE31411; XK235 WormBase description: ankyrin repeats
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C11H1.3 Aff_C11H1.3 P W All gene names: C11H1.3; CE05262; WBGene00007529; WP:CE05262; XO930 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

C24H12.5 Aff_C24H12.5 P W All gene names: C24H12.5; 2A698; CE08359; CE27729; WBGene00016074; WP:CE08359; WP:CE27729
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen                                           

C25D7.7 Aff_C25D7.7 P W All gene names: rap-2; C25D7.7; 5P542; CE35831; NM_074306; WBGene00004308; WP:CE35831 WormBase description: rap-2 encodes a Ras-related GTPase that is most similar to the RAP2 members of the Ras GTPase superfamily; by homology, RAP-2 is predicted to function as a membrane-localized GTPase that likely plays a role in signal transduction; as animals homozygous for a rap-2 deletion mutation show no obvious abnormalities, the precise role of RAP-2 in C. elegans development and/or behavior is not yet known. WormBase CDS description: RAS-related protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C26G2.1 Aff_C26G2.1 P W All gene names: syg-2; C26G2.1; CE19703; NM_078034; WBGene00007750; WP:CE19703; XP281 WormBase description: syg-2 encodes a transmembrane protein that is a member of the immunoglobulin superfamily of proteins; during larval development, SYG-2 activity is required in vulval epithelial cells for proper synaptic specificity of the HSNL neuron; in regulating synapse formation, SYG-2 acts as a guidepost protein for the SYG-1 receptor that interacts with SYG-2 and acts within HSNL to regulate synaptic specificity; a SYG-2::GFP fusion protein is expressed in the primary vulval cell lineages beginning at the L3 larval stage, with expression increasing during the L4 stage and finally disappearing by adulthood; in embryos, SYG-2::GFP expression is detected in some head neurons and body wall muscles, the latter of which also express the reporter during the L1 and L2 larval stages. WormBase CDS description: Immunoglobulin domain ; Fibronectin type III domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C27A2.6 Aff_C27A2.6 P W All gene names: dsh-2; C27A2.6; 2F370; CE27097; NM_062536; WBGene00001102; WP:CE27097 WormBase description: dsh-2 encodes a protein containing a DIX domain, a DEP domain, and a PDZ domain that is required for embryonic viability and functions in Wnt pathway signaling between the embryonic blastomeres P2 and EMS with respect to endoderm specification and to orient the division axis of the EMS cell; expressed from the four-cell embryo stage, and is primarily associated with membranes.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig4 Wnt signaling                              
                                              genes, Reinke et al 2004, fem1 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

C31E10.6 Aff_C31E10.6 P W All gene names: C31E10.6; CE08506; WBGene00007847; WP:CE08506; XO617
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C33F10.5 Aff_C33F10.5 P W All gene names: rig-6; tag-227; C33F10.5; 2F90; CE04138; CE25803; CE31679; CE37327; NM_062460; NM_062461; NM_170981; WBGene00016354; WP:CE04138; WP:CE25803; WP:CE31679; WP:CE37327 WormBase description: fibronectin, IG-like domains of NCAM
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C33G3.4 Aff_C33G3.4 P W All gene names: C33G3.4; CE08560; WBGene00007904; WP:CE08560; XO693 WormBase description: C33G3.4 is orthologous to the human gene BETA-MANNOSIDASE (MANBA; OMIM:248510), which when mutated leads to disease. WormBase CDS description: beta-mannosidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C39F7.2 Aff_C39F7.2 P W All gene names: C39F7.2; C39F7.2.1; C39F7.2.2; 5B704; CE27581; WBGene00016539; WP:CE27581
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C47G2.2 Aff_C47G2.2 P W All gene names: unc-130; C47G2.2; 2L573; CE02166; NM_064010; WBGene00006853; WP:CE02166 WormBase description: A member of the forkhead domain family of transcription factors that affects the generation of the AWA and ASG chemosensory neurons and is partially required for male tail morphogenesis and embryogenesis; it is expressed in the AWA and ASG precursors; it is required for the graded spatial expression of the UNC-129 TGF-beta guidance factor. WormBase CDS description: fork head domain protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C49C3.7 Aff_C49C3.7 P W All gene names: C49C3.7; 4S277; CE19746; WBGene00008197; WP:CE19746
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E                                                   

C50C3.9 Aff_C50C3.9 P W All gene names: unc-36; unc-72; C50C3.9; 3J284; CE32168; CE39702; NM_066388; WBGene00006772; WP:CE32168; WP:CE39702; eT1
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Roy et al 2002  S3 muscle genes,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C52A11.4 Aff_C52A11.4 P W All gene names: mpz-1; C52A11.4; 2L48; CE35841; CE35842; WBGene00003404; WP:CE35841; WP:CE35842 WormBase description: lethal(1) discs large-1 tumor suppressor protein-like repeats
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C52B11.2 Aff_C52B11.2 P W All gene names: tag-303; C52B11.2; CE04258; WBGene00016871; WP:CE04258; XB927 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C52E12.4 Aff_C52E12.4 P W All gene names: C52E12.4; 2H304; CE31684; WBGene00016889; WP:CE31684
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C55B6.2 Aff_C55B6.2 P W All gene names: dnj-7; C55B6.2; CE09008; NM_076808; WBGene00001025; WP:CE09008; XH815 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain that is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

C56C10.13 Aff_C56C10.11 P W All gene names: dnj-8; C56C10.13; C56C10.13b.1; C56C10.13b.2; 2G886; CE28901; CE39709; NM_062939; WBGene00001026; WP:CE28901; WP:CE39709 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen                                              

C56G2.1 Aff_C56G2.1 P W All gene names: C56G2.1; 3H455; CE24866; CE30637; WBGene00016977; WP:CE24866; WP:CE30637
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 TransientList,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

CC4.3 Aff_CC4.3 P W All gene names: smu-1; CC4.3; CC4.3.1; CC4.3.2; CC4.3.3; 1N595; CE15742; NM_060878; WBGene00004895; WP:CE15742 WormBase description: WD domain, G-beta repeats (2 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

D2045.2 Aff_D2045.2 P W All gene names: D2045.2; 3L542; CE00639; WBGene00008422; WP:CE00639
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, oogenesis enriched genes, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated                                                      

F09E5.1 Aff_F09E5.1 P W All gene names: pkc-3; F09E5.1; F09E5.1.1; F09E5.1.2; 2F673; CE02604; NM_062610; WBGene00004034; WP:CE02604 WormBase description: Protein kinase C
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              daf-16 Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F10G8.8 Aff_F10G8.8 P W All gene names: F10G8.8; 1K628; CE30751; WBGene00008666; WP:CE30751 WormBase description: PH (pleckstrin homology) domain (2 domains)
F11C7.4 Aff_F11C7.4 P W All gene names: crb-1; F11C7.4; CE07053; NM_078421; WBGene00000792; WP:CE07053; XS16 WormBase description: crb-1 encodes a homolog of Drosophila CRUMBS that affects dauer formation and feeding behavior; CRB-1 can bind cyclic AMP-response element (CRE) sites and be phosphorylated by PKA in vitro, and is expressed immediately apical to the zonula adherens in embryos and then ubiquitously later during development and in adults; CRB-1 is homologous to human CRB1 (OMIM:604210, mutated in retinitis pigmentosa 12 or Leber congenital amaurosis). WormBase CDS description: EGF-like repeats
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F12F6.3 Aff_F12F6.3 P W All gene names: rib-1; F12F6.3; F12F6.3.1; F12F6.3.2; 4M347; CE24898; NM_069779; WBGene00004360; WP:CE24898 WormBase description: The rib-1 gene encodes an ortholog of human EXT1, which when mutated leads to hereditary multiple exostoses, type I (OMIM:133700). WormBase CDS description: MULTIPLE EXOSTOSES HOMOLOG 1
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E                                                

F16B4.8 Aff_F16B4.8 P W All gene names: cdc-25.2; F16B4.8; 5C63; CE19796; NM_071045; WBGene00000387; WP:CE19796 WormBase description: cdc-25.2 encodes a putative homolog of Cdc25 phosphatase protein family that affects germline proliferation. WormBase CDS description: protein-tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

F17C11.10 Aff_F17C11.10 P W All gene names: F17C11.10; 5L442; CE05657; WBGene00008921; WP:CE05657 WormBase description: sepB domain
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F19H8.3 Aff_F19H8.3 P W All gene names: arl-3; F19H8.3; 2O895; CE15872; NM_064636; WBGene00000188; WP:CE15872 WormBase description: arl-3 encodes a member of the ARL (ADP-ribosylation factor(ARF)-like) family of proteins which are very similar to ARF proteins but lack the ability to stimulate ADP ribosylation by cholera toxin; as loss of arl-3 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of ARL-3 is not yet known. WormBase CDS description: ADP-ribosylation factors (Arf family) (contains ATP/GTP binding P-loop)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

F20B10.1 Aff_F20B10.1 P W All gene names: nlr-1; F20B10.1; 4M936; CE17688; NM_069911; WBGene00003772; WP:CE17688 WormBase description: neurexin III like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F20C5.6 Aff_F20C5.6 P W All gene names: F20C5.6; 4J536; CE03243; WBGene00008971; WP:CE03243 WormBase description: spectrin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F21H11.2 Aff_F21H11.1 P W All gene names: sax-2; F21H11.2; 3G219; CE38067; CE38068; NM_171117; NM_171118; WBGene00004728; WBGene00017682; WP:CE38067; WP:CE38068
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, ViswanathanM et al 2005 S2                                     
                                              Resveratrol regulate WT                                                            

F22F7.7 Aff_F22F7.7 P W All gene names: F22F7.7; F22F7.7.1; F22F7.7.2; 5C610; CE27995; WBGene00017724; WP:CE27995
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F25B3.6 Aff_F25B3.6 P W All gene names: F25B3.6; 5K60; CE09619; WBGene00009103; WP:CE09619
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F25B5.2 Aff_F25B5.2 P W All gene names: F25B5.2; F25B5.2.1; F25B5.2.2; 3H51; CE01919; WBGene00017774; WP:CE01919
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F27D9.1 Aff_F27D9.1 P W All gene names: lan-2; unc-18; unc-19; F27D9.1; F27D9.1a.1; F27D9.1a.2; CE04449; CE24927; CE34004; NM_076897; WBGene00006757; WP:CE04449; WP:CE24927; WP:CE34004; XI303 WormBase description: unc-18 encodes an ortholog of Saccharomyces cervisiae SEC1 that enables the docking of vesicles to synaptic regions before vesicle priming and fusion, and thus promotes synaptic vesicle exocytosis; UNC-18 may also inhibit excessive exocytosis.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F28D1.1 Aff_F28D1.1 P W All gene names: F28D1.1; F28D1.1.1; F28D1.1.2; 4N139; CE05741; WBGene00009211; WP:CE05741 WormBase description: Yeast hypothetical protein YER2 like
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig5                                    
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F30H5.1 Aff_F30H5.1 P W All gene names: unc-45; F30H5.1; 3B119; CE01925; NM_064804; WBGene00006781; WP:CE01925 WormBase description: P59 protein and TPR domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Roy et al 2002  S2                                           
                                              positivecontrol L1 muscle                                                          

F32A6.4 Aff_F32A6.4 P W All gene names: ags-3.1; ags-3; F32A6.4; CE04472; CE29783; CE34009; NM_171684; NM_171951; WBGene00000092; WP:CE04472; WP:CE29783; WP:CE34009; XF910 WormBase description: ags-3 encodes an ortholog of mammalian AGS3, a receptor independent activator of G protein signalling, and of Drosophila RAPSYNOID; AGS-3 proteins have four GoLoco motifs; AGS-3 is involved in polarity and spindle orientation during early embryogenesis; a region of AGS-3 encompassing three GoLoco motifs specifically binds GOA-1 in yeast two-hybrid assays; AGS-3 is expressed in all muscles, intestine, and weakly in some head and ventral nerve cord neurons, with subcellular localization in strong dots.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F32F2.1 Aff_F32F2.1 P W All gene names: uig-1; F32F2.1; 5N754; CE18658; WBGene00009337; WP:CE18658 WormBase description: Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

F33G12.6 Aff_F33G12.6 P W All gene names: F33G12.6; 2F343; CE32644; CE37010; WBGene00018018; WP:CE32644; WP:CE37010
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F36A2.1 Aff_F36A2.1 P W All gene names: F36A2.1; F36A2.1a.1; F36A2.1a.2; 1J382; CE39364; CE39365; WBGene00009451; WP:CE39364; WP:CE39365
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

F36A2.13 Aff_F36A2.13 P W All gene names: F36A2.13; 1J404; CE24948; WBGene00009460; WP:CE24948
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              GO categories                                                                      

F36D4.3 Aff_F36D4.3 P W All gene names: hum-2; F36D4.3; F36D4.3c.1; F36D4.3c.2; 5J879; CE30777; CE33076; CE33077; CE35927; CE35928; NM_073032; WBGene00002036; WP:CE30777; WP:CE33076; WP:CE33077; WP:CE35927; WP:CE35928 WormBase description: hum-2 is orthologous to the human gene MYOSIN HEAVY CHAIN 12 (MYO5A; OMIM:160777), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F36F12.1 Aff_F36F12.1 P W All gene names: F36F12.1; 5C580; CE17781; WBGene00018092; WP:CE17781
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F37D6.2 Aff_F37D6.2 P W All gene names: F37D6.2; F37D6.2a.1; F37D6.2a.2; 1L52; CE05819; CE29592; WBGene00009508; WP:CE05819; WP:CE29592 WormBase description: Zinc finger, C2H2 type (2 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F39C12.3 Aff_F39C12.3 P W All gene names: tsp-14; F39C12.3; F39C12.3a.1; F39C12.3a.2; CE10096; CE29315; NM_076427; NM_076428; WBGene00006640; WP:CE10096; WP:CE29315; XF486 WormBase description: transpanin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F41H10.3 Aff_F41H10.3 P W All gene names: F41H10.3; 4G139; CE10276; CE31694; WBGene00018316; WP:CE10276; WP:CE31694
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F42G9.6 Aff_F42G9.6 P W All gene names: F42G9.6; CE30791; CE30792; CE37235; NM_171074; NM_171860; WBGene00018364; WP:CE30791; WP:CE30792; WP:CE37235
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

F43G9.11 Aff_F43G9.11 P W All gene names: ces-1; F43G9.11; 1J211; CE17821; NM_059937; WBGene00000468; WP:CE17821 WormBase description: ces-1 encodes a C2H2-type zinc finger transcription factor that is a member of the Snail family of proteins that includes Drosophila Scratch, Snail, and Slug, and human SNAIL and SLUG; although the normal function of CES-1 is not fully understood, gain-of-function mutations indicate that CES-1 can function as a transcriptional repressor that blocks programmed cell death in specific neurons by inhibiting expression of the cell-death activator EGL-1; in regulating EGL-1 expression, CES-1 appears to antagonize the transcriptional activity of the bHLH proteins, HLH-2 and HLH-3; despite its cell-type specific role in apoptosis, CES-1 expression is reportedly detected in many embryonic nuclei from the 100-cell stage of embryogenesis through the beginning of morphogenesis, with some CES-1 expression remaining at later embryonic stages; genetic studies indicate that CES-1 is negatively regulated by the bZIP transcription factor CES-2, which can bind CES-1 upstream sequences in vitro and thus may directly regulate CES-1 transcription in vivo WormBase CDS description: Zinc finger, C2H2 type (5 domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Romagnolo et al 2002  Fig3b TF                                              

F44B9.3 Aff_F44B9.3 P W All gene names: cit-1.2; F44B9.3; 3J103; CE29042; CE32417; NM_066344; NM_181926; WBGene00000508; WP:CE29042; WP:CE32417 WormBase description: cit-1.2 encodes one of two C. elegans cyclin T orthologs; RNAi experiments indicate that CIT-1.2 functions redundantly with CIT-1.1 to broadly regulate embryonic transcription; by homology, CIT-1.1 and CIT-1.2 are predicted to interact with the CDK-9 kinase to form the P-TEFb transcription elongation factor that in C. elegans is required for Ser2, but not Ser5, phosphorylation in the C-terminal domain (CTD) repeat of AMA-1/PolII.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F44E2.7 Aff_F44E2.7 P W All gene names: F44E2.7; F44E2.7b.1; F44E2.7b.2; F44E2.7b.3; F44E2.7b.4; F44E2.7b.5; 3J936; CE24975; CE29802; CE30994; CE30995; WBGene00018420; WP:CE24975; WP:CE29802; WP:CE30994; WP:CE30995
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Jones et al 2001  Non dauer                             
                                              genes P<0.05, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004,                                
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

F45E12.2 Aff_F45E12.2 P W All gene names: brf-1; F45E12.2; 2H597; BRF; CE02738; NM_063125; WBGene00000271; WP:CE02738 WormBase description: brf-1 encodes an ortholog of mammalian B-RELATED FACTOR (also known as BRF, TDS4, PCF4, or hTFIIIB90); BRF is thought to act as a molecular bridge between TATA-binding protein (TBP) associated factors that functions in TFIIIB (RNA polymerase III associated transcription factors). WormBase CDS description: transcription initiation factor IIB
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004,                                
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F48E3.6 Aff_F48E3.6 P W All gene names: F48E3.6; CE02753; WBGene00018606; WP:CE02753; XI120
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

F48F7.4 Aff_F48F7.4 P W All gene names: pqn-39; F48F7.4; CE05891; NM_077924; WBGene00004126; WP:CE05891; XO584 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F52B11.1 Aff_F52B11.1 P W All gene names: F52B11.1; F52B11.1a.1; F52B11.1a.2; F52B11.1a.3; 4O847; CE33791; CE33792; WBGene00009924; WP:CE33791; WP:CE33792
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F52E10.5 Aff_F52E10.5 P W All gene names: ifa-3; F52E10.5; CE34875; Cel IF A3; CelIF a3; NM_078248; WBGene00002051; WP:CE34875; XQ882 WormBase description: ifa-3 encodes an essential intermediate filament protein that is coexpressed with the essential IF protein IFB-1; IFA-3 is required for survival past early larval stages, correct positioning of excretory canals and body muscles, attachment of cuticle to hypodermis, and locomotion; IFA-3 forms heteropolymeric intermediate filaments in vitro with an equimolar mixture of IFB-1; IFA-3 is expressed in embryonic and larval, but not adult, hypodermis. WormBase CDS description: intermediate filament protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Wang et al 2003  S4 Climbing, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F53C11.5 Aff_F53C11.5 P W All gene names: F53C11.5; 5O275; CE17854; WBGene00009975; WP:CE17854
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F53H1.1 Aff_Y104H12B_374.A P W All gene names: F53H1.1; 4C62; CE27427; WBGene00018776; WP:CE27427 WormBase description: helicase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F54B11.6 Aff_F54B11.6 P W All gene names: bra-1; F54B11.6; CE05930; NM_077876; WBGene00000262; WBGene00010029; WP:CE05930; XO217 WormBase description: The bra-1 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1) that negatively regulates the DAF-1/DAF-7/DAF-14 TGF-beta signalling pathway.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F54B3.1 Aff_F54B3.1 P W All gene names: F54B3.1; 2K557; CE17865; WBGene00010013; WP:CE17865 WormBase description: ATP binding protein (CDC48/PAS1/SEC18 family)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

F54E4.3 Aff_F54E4.3 P W All gene names: F54E4.3; CE11078; WBGene00010059; WP:CE11078; XP252
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

F55F8.2 Aff_F55F8.2 P W All gene names: F55F8.2; 1G216; CE11190; CE33400; WBGene00018890; WP:CE11190; WP:CE33400 WormBase description: RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

F56A8.1 Aff_F56A8.1 P W All gene names: F56A8.1; 3O345; CE16121; WBGene00010138; WP:CE16121
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F56C11.2 Aff_F56C11.2 P W All gene names: ptr-11; F56C11.2; 1A634; CE17902; NM_058286; WBGene00004225; WP:CE17902
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F56F3.1 Aff_F56F3.1 P W All gene names: pqn-45; F56F3.1; 3F562; CE17911; NM_065508; WBGene00004132; WP:CE17911 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F56H9.5 Aff_F56H9.5 P W All gene names: lin-25; F56H9.5; 5N137; CE05975; NM_073761; WBGene00003011; WP:CE05975 WormBase description: lin-25
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F57C12.5 Aff_F57C12.5 P W All gene names: mrp-1; sdf-14; F57C12.5; F57C12.5d.1; F57C12.5d.2; F57C12.5d.3; CE25015; CE29412; CE31189; CE34565; CE39102; NM_075721; WBGene00003407; WP:CE25015; WP:CE29412; WP:CE31189; WP:CE34565; WP:CE39102; XB196 WormBase description: ABC transporter
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F58G11.5 Aff_F58G11.5 P W All gene names: scaf-6; tag-65; F58G11.5; F58G11.5.1; F58G11.5.2; 5O156; CE28038; WBGene00006442; WP:CE28038
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

H20J04.2 Aff_H20J04_865.B P W All gene names: H20J04.2; 2E639; CE27187; WBGene00019217; WP:CE27187
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

H20J18.1 Aff_H20J18.1 P W All gene names: scd-1; H20J18.1; CE18818; CE31554; NM_171785; NM_171974; WBGene00004739; WP:CE18818; WP:CE31554; XN124 WormBase description: scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine); SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

H42K12.1 Aff_H33H01.A P W All gene names: pdk-1; H33H01.A; H42K12.1; CE28739; CE28740; WBGene00003965; WP:CE28739; WP:CE28740; XB945 WormBase description: The pdk-1 gene encodes an ortholog of the human 3-phosphoinositide dependent kinase 1 (PDK1; OMIM:605213).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma                                                   

K02A11.1 Aff_K02A11.1 P W All gene names: gfi-2; K02A11.1; K02A11.1b.1; K02A11.1b.2; 1K319; CE11616; CE28044; NM_060186; NM_060187; WBGene00001582; WP:CE11616; WP:CE28044 WormBase description: ankyrin motifs
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K02E10.2 Aff_K02E10.2 P W All gene names: hid-1; K02E10.2; CE04694; CE34327; NM_076053; WBGene00001844; WP:CE04694; WP:CE34327; XD111
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

K03H1.2 Aff_K03H1.2 P W All gene names: mog-1; K03H1.2; 3L42; CE01027; NM_066811; WBGene00003389; WP:CE01027 WormBase description: The mog-1 gene encodes a DEAH helicase orthologous to the Drosophila CG1375/1405, the human PRP16, and the S. cerevisiae PRP16 proteins. WormBase CDS description: RNA helicase (DEAH subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K04A8.6 Aff_K04A8.6 P W All gene names: F46E10.A; K04A8.6; 5H14; CE27388; WBGene00019377; WP:CE27388 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

K08B4.1 Aff_K08B4.1 P W All gene names: lag-1; K08B4.1; 4G873; CE25048; CE28839; NM_171350; WBGene00002245; WP:CE25048; WP:CE28839 WormBase description: lag-1 encodes a transcription factor orthologous to members of the CSL (CBF1, Suppressor of Hairless, LAG-1) family that is highly conserved amongst metazoans; during development, LAG-1 functions as a downstream effector in both the lin-12- and glp-1-mediated Notch-like signaling pathways and accordingly, is required for such processes as germline induction, AC/VU lateral signaling, and embryonic development; LAG-1 can bind a consensus CSL family binding site found in multiple copies in the predicted regulatory regions of lin-12, glp-1, and lag-1, thus implicating LAG-1 as an important component of the positive feedback loop observed in the LIN-12/GLP-1 signaling pathway; LAG-1 is detected in all nuclei of the germ line except mature sperm, somatic gonad, and early embryo.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, Roy et al 2002                             
                                              S3 muscle genes, ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K08F9.2 Aff_K08F9.2 P W All gene names: tag-216; K08F9.2; K08F9.2.1; K08F9.2.2; K08F9.2.3; 5P616; CE11944; WBGene00010685; WP:CE11944 WormBase description: beta-transducin like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S5 genes                              
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

K09A9.2 Aff_K09A9.2 P W All gene names: rab-14; K09A9.2; K09A9.2.1; K09A9.2.2; CE11974; NM_078171; WBGene00004276; WP:CE11974; XQ224 WormBase description: rab-14 encodes a member of the Rab GTPase family. WormBase CDS description: RAS-related protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster A,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, GO                                  
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

K10D6.4 Aff_K10D6.4 P W All gene names: K10D6.4; K10D6.4.1; K10D6.4.2; 5L695; CE36185; WBGene00010744; WP:CE36185
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

K11D12.2 Aff_K11D12.2 P W All gene names: pqn-51; K11D12.2; K11D12.2.1; K11D12.2.2; K11D12.2.3; K11D12.2.4; 5F529; CE12128; NM_071954; WBGene00004136; WP:CE12128 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

K12D12.2 Aff_K12D12.2 P W All gene names: npp-3; K12D12.2; K12D12.2.1; K12D12.2.2; 2M156; CE02271; NM_064133; WBGene00003789; WP:CE02271 WormBase description: npp-3 encodes a predicted nucleoporin that is a homolog of vertebrate Nup205, and is required for normal nuclear pore complex distribution in the nuclear envelope, affects nuclear exclusion of large non-nuclear macromolecules, chromatin condensation, early embryonic viability, body integrity and locomotion.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, ViswanathanM et                              
                                              al 2005  S2 daf-16 Resveratrol                                                     

M02A10.3 Aff_M02A10.3 P W All gene names: sli-1; M02A10.3; CE25058; CE27393; CE37131; NM_075744; WBGene00004829; WP:CE25058; WP:CE27393; WP:CE37131; XB340 WormBase description: adaptor-like E3 ubiquitin ligase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

M03C11.7 Aff_M03C11.7 P W All gene names: M03C11.7; M03C11.7.1; M03C11.7.2; 3L514; CE03498; WBGene00010844; WP:CE03498
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

R02F11.4 Aff_R02F11.4 P W All gene names: R02F11.4; 5F290; CE12502; WBGene00019842; WP:CE12502
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

R03D7.4 Aff_R03D7.4 P W All gene names: R03D7.4; 2L234; CE01611; WBGene00010990; WP:CE01611
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R05D3.4 Aff_R05D3.4 P W All gene names: rfp-1; R05D3.4; 3J451; CE00283; CE37396; WBGene00007008; WP:CE00283; WP:CE37396
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

R06F6.8 Aff_R06F6.8 P W All gene names: R06F6.8; 2L104; CE36946; CE36947; WBGene00011071; WP:CE36946; WP:CE36947
R07B5.9 Aff_R07B5.8 P W All gene names: R07B5.9; CE31575; WBGene00011086; WP:CE31575
R11E3.6 Aff_R11E3.6 P W All gene names: eor-1; R11E3.6; R11E3.6.1; R11E3.6.2; R11E3.6.3; 4F558; CE19548; NM_068244; WBGene00001324; WP:CE19548 WormBase description: eor-1 encodes an ortholog of the human BTB/zinc-finger transcription factor PLZF (OMIM:176797), which is is found as a retinoic acid receptor alpha (RARA) fusion in acute promyelocytic leukemia (APL); EOR-1 positively regulates RAS/RAF-mediated signalling during excretory system development, as well as RAS/RAF- and WNT-mediated signalling during P12 fate specification; EOR-1 may function with EOR-2 and Hox genes to control the expression of Ras- and Wnt-responsive genes. WormBase CDS description: zinc-finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 daf-16 Resveratrol                                                        

R144.2 Aff_R144.2 P W All gene names: R144.2; 3G119; CE02032; CE32709; WBGene00020092; WP:CE02032; WP:CE32709
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

R160.1 Aff_R160.1 P W All gene names: apm-2; dpy-23; R160.1; R160.1b.1; R160.1b.2; CE33813; CE33814; CEAP50; NM_171670; WBGene00001082; WP:CE33813; WP:CE33814; XF13 WormBase description: The dpy-23 gene encodes an adaptin: specifically, it encodes an ortholog of the mu2 subunit of adaptor protein complex 2 (AP-2).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

T04F8.6 Aff_T04F8.6 P W All gene names: T04F8.6; CE37403; WBGene00011444; WP:CE37403; XM289
T05B4.2 Aff_T05B4.2 P W All gene names: nhr-57; T05B4.2; 5E613; CE13195; NM_071752; WBGene00003647; WP:CE13195 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

T05E8.3 Aff_T05E8.3 P W All gene names: T05E8.3; 1G42; CE37043; WBGene00020263; WP:CE37043 WormBase description: The T05E8.3 gene encodes a divergent DEAH helicase that is (apparently) unique to Caenorhabditis; it has no well-characterized orthologs in the complete Drosophila or S. cerevisiae genomes, and no obvious orthologs in the draft human genome sequence either. WormBase CDS description: helicase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories                                                                         

T08H4.3 Aff_T08H4.3 P W All gene names: ast-1; T08H4.3; 2E418; CE19576; WBGene00020368; WP:CE19576 WormBase description: ETS protein
T13F3.3 Aff_T13F3.3 P W All gene names: nhr-127; T13F3.3; 5Q743; CE35617; NM_074703; WBGene00003717; WP:CE35617 WormBase description: nhr-127 encodes a member of the nuclear hormone receptor family; expressed in hypodermal seam cells from the embryonic 1.5-fold stage until the L1 larval stage. WormBase CDS description: Zinc finger, C4 type (two domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T14G8.3 Aff_T14G8.3 P W All gene names: T14G8.3; CE37407; CE37408; WBGene00011771; WP:CE37407; WP:CE37408; XN487 WormBase description: T14G8.3 encodes an ortholog of hypoxia-upregulated vertebrate proteins such as human HYOU1; T14G8.3, its C. elegans paralog T24H7.2, and HYOU1 are ER resident hsp70 family molecular chaperone homologs; the grp (glucose regulated protein) 170 family is a collection of related large hsp70 chaperones confined to the ER; members of this family are present in all eukaryotes, participating in a wide range of cellular functions. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002 Aging time course                                 
                                              Fig2C heatshock, Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig2a heat shock,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T19H12.2 Aff_T19H12.2 P W All gene names: T19H12.2; T19H12.2.1; T19H12.2.2; 5F369; CE13754; WBGene00020588; WP:CE13754
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T20F10.1 Aff_T20F10.1 P W All gene names: tag-181; T20F10.1; 1K868; CE13844; WBGene00007047; WBGene00011863; WP:CE13844 WormBase description: Protein kinase C terminal domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T22A3.3 Aff_T22A3.3 P W All gene names: lst-1; T22A3.3; T22A3.3b.1; T22A3.3b.2; T22A3.3b.3; T22A3.3b.4; T22A3.3b.5; T22A3.3b.6; 1L165; CE38420; CE38421; WBGene00003083; WP:CE38420; WP:CE38421 WormBase description: lst-1 encodes an unfamiliar protein with no known homologs outside of nematodes; in two-hybrid assays, LST-1 does not interact with control baits, but does interact with GPA-6, LAG-1, MPK-1 and K06A1.4, suggesting broad or unspecific interaction activity; however, T22A3.3 solely binds the normal form of GPA-6, without binding its constitutively active mutant form; LST-1 is expressed in head neurons (AWB, ADF, ASG, various interlabial sensory), socket cells, sheath cells in the nose tip, pharyngeal muscle, and intestine; LST-1 has no obvious function or phenotype in RNAi assays.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

T22B7.4 Aff_T22B7.4 P W All gene names: T22B7.4; CE13946; WBGene00020673; WP:CE13946; XG258
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T22C1.11 Aff_T22C1.11 P W All gene names: T22C1.11; 1I544; CE24001; WBGene00011920; WP:CE24001
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T22F7.1 Aff_T22F7.1 P W All gene names: T22F7.1; CE01416; WBGene00020701; WP:CE01416
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T27C4.4 Aff_T27C4.4 P W All gene names: egr-1; T27C4.4; 5E189; CE21211; CE21212; CE33330; CE33331; NM_071630; NM_071631; NM_182323; NM_182324; WBGene00001219; WP:CE21211; WP:CE21212; WP:CE33330; WP:CE33331 WormBase description: egr-1 encodes a homolog of human MTA1, part of an ATP-dependent complex with nucleosome remodelling and histone deacetylation activities that may promote tumor metastasis; in conjunction with its paralog egl-27, egr-1 is required for proper organization in all parts of the embryo, and for the embryonic expression of hlh-8.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

T27E9.4 Aff_T27E9.4 P W All gene names: kel-3; T27E9.4; T27E9.4a.1; T27E9.4a.2; T27E9.4a.3; 3O559; CE29824; CE29825; NM_067383; NM_067384; WBGene00002185; WP:CE29824; WP:CE29825 WormBase description: ring canal protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

W04D2.6 Aff_W04D2.6 P W All gene names: W04D2.6; 5M983; CE32000; CE32001; WBGene00012245; WP:CE32000; WP:CE32001 WormBase description: RNA recognition motif. (aka RRM, RBD, or RNP domain)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

W05F2.4 Aff_W05F2.4 P W All gene names: W05F2.4; CE30702; CE37251; WBGene00021036; WP:CE30702; WP:CE37251
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

W09C5.5 Aff_W09C5.5 P W All gene names: W09C5.5; 1O232; CE20167; WBGene00012352; WP:CE20167 WormBase description: Phorbol esters/diacylglycerol binding domain (C1 domain) ; Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W09G12.1 Aff_W09G12.1 P W All gene names: dsl-2; W09G12.1; 4B956; CE23182; NM_067651; WBGene00001104; WP:CE23182
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E                                             

W09G3.2 Aff_W09G3.2 P W All gene names: W09G3.2; W09G3.2.1; W09G3.2.2; 1O400; CE16568; WBGene00012366; WP:CE16568
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast                                                                           

Y102A5A.1 Aff_Y102A5A.1 P W All gene names: cand-1; Y102A5A.1; 5R293; CE20378; WBGene00013606; WP:CE20378
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y105C5B.21 Aff_Y105C5.UU P W All gene names: jac-1; Y105C5B.21; Y105C5B.21b.1; Y105C5B.21b.2; 4Q764; CE32231; CE39806; NM_070509; WBGene00002175; WP:CE32231; WP:CE39806 WormBase description: jac-1 encodes the C. elegans p120 catenin orthologue; by homology, JAC-1 is predicted to be a component of the cadherin-catenin complex (CCC); although loss of jac-1 activity via RNAi does not result in obvious defects, jac-1(RNAi) does enhance embryonic morphogenesis defects produced by weak loss-of-function mutations in hmp-1/alpha-catenin, suggesting that JAC-1 positively regulates cadherin-catenin function in the embryo; JAC-1 likely regulates this function by promoting association between the actin cytoskeleton and the cadherin-catenin complex; a JAC-1 reporter fusion localizes to embryonic adherens junctions in a manner that is dependent upon the presence of HMR-1/cadherin, with which it specifically interacts in the yeast two-hybrid system.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y111B2A.11 Aff_Y111B2A.I P W All gene names: epc-1; Y111B2A.11; Y111B2C.M; 3N690; CE36670; NM_067241; WBGene00007030; WP:CE36670
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S7 SAGE genes in                               
                                              the dataset                                                                        

Y23H5A.3 Aff_Y23H5A.3 P W All gene names: Y23H5A.3; 1D189; CE18359; WBGene00021270; WP:CE18359
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              males vs glp4 male enriched , ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 Climbing, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y25C1A.6 Aff_Y25C1A.I P W All gene names: Y25C1A.6; Y25C1A.6.1; Y25C1A.6.2; Y25C1A.I; CE21473; WBGene00021293; WP:CE21473
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y37E11B.3 Aff_Y37E11B.3 P W All gene names: Y37E11B.3; 4E346; CE19613; WBGene00021376; WP:CE19613
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, list of                             
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

Y38A8.3 Aff_Y38A8.3 P W All gene names: ulp-2; Y38A8.3; 2F246; CE29374; NM_062513; WBGene00006737; WP:CE29374
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

Y38C9A.1 Aff_Y38C9A.D P W All gene names: Y38C9A.1; Y38C9A.D; 5A595; CE31104; WBGene00021411; WP:CE31104
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol                                                     

Y39A1B.3 Aff_Y39A1B.3 P W All gene names: dpy-28; Y39A1B.3; 3L865; CE31734; NM_066978; WBGene00001087; WP:CE31734 WormBase description: dpy-28 encodes a non-SMC condensin subunit homolog, similar to XCAP-D2 in Xenopus, Cnd1 in S. pombe, and Ycs4p in S. cerevisiae, that is required for negative, chromosome-wide regulation of X-chromosomal genes in XX but not XO animals (dosage compensation), and for some undetermined aspect of body morphogenesis; DPY-28 is part of a multiprotein 'dosage compensation' complex with DPY-26, DPY-27 and MIX-1.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, list of genes in cluster F, Reinke et al 2004, wt                            
                                              vs glp-4 enriched genes, Reinke et al 2004, list of                                
                                              genes in cluster order                                                             

Y40B1B.6 Aff_Y40B1B.6 P W All gene names: spr-5; Y40B1B.6; Y40B1B.6.1; Y40B1B.6.2; 1O41; CE20240; NM_060965; WBGene00005010; WP:CE20240
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

Y47D3A.29 Aff_Y47D3A.D P W All gene names: Y47D3A.29; Y47D3A.C; 3M243; CE32262; WBGene00012936; WP:CE32262 WormBase description: DNA polymerase alpha subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, GO categories                                

Y47G6A.6 Aff_Y47G6A_241.B P W All gene names: pcaf-1; Y47G6A.6; 1E91; CE24372; NM_058772; WBGene00021636; WP:CE24372
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, GO categories,                            
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y48C3A.7 Aff_Y48C3A.H P W All gene names: mac-1; Y48C3A.7; 2N602; CE28132; NM_064413; WBGene00003119; WP:CE28132
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Wang et al 2003                            
                                               S5 genes common to feeding ANOVA, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA                                                           

Y48G8AL.9 Aff_Y48G8A_4850.A P W All gene names: Y48G8AL.9; 1B610; CE27276; WBGene00021688; WP:CE27276
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

Y54E10A.15 Aff_Y54E10A_156.A P W All gene names: cdt-1; Y54E10A.15; 1D792; CE22447; NM_058725; NM_182086; WBGene00000413; WP:CE22447
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, herm                              
                                              soma enriched genes                                                                

Y54G2A.25 Aff_Y94H6A_148.F P W All gene names: lad-2; Y54G2A.25; Y94H6A_148.D; Y94H6A_148.E; Y94H6A_148.F; Y94H6A_148.G; 4D730; CE31651; CE34414; CE34415; NM_067875; WBGene00002243; WP:CE31651; WP:CE34414; WP:CE34415 WormBase description: lad-2 encodes a member of the immunoglobulin superfamily that is orthologous to Drosophila Neuroglian and the vertebrate L1-type neural adhesion molecules; although the precise role of LAD-2 in C. elegans development and/or behavior is not yet known, by homology, LAD-2 is predicted to function as an integral membrane receptor that regulates axon guidance and tissue morphogenesis; a lad-2 transcriptional reporter fusion is expressed in the SMD, SAA, SDQ, ALN, and PLN neurons.
Y54G2A.26 Aff_Y94H6A_148.B, Aff_Y94H6A_148.C P W All gene names: Y54G2A.26; Y54G2A.26a.1; Y54G2A.26a.2; Y54G2A.26b.1; Y54G2A.26b.2; Y94H6A_148.A; Y94H6A_148.B; Y94H6A_148.C; 4D752; CE30050; CE33888; WBGene00021890; WP:CE30050; WP:CE33888
Y59A8B.9 Aff_Y59A8A.V P W All gene names: tag-201; Y59A8B.9; CE26218; NM_075127; WBGene00007062; WBGene00013346; WP:CE26218
Y60A3A.1 Aff_Y60A3.Y P W All gene names: unc-51; Y60A3.W; Y60A3A.1; Y60A3A.1.1; Y60A3A.1.2; 5U466; CE24516; NM_075468; WBGene00006786; WP:CE24516 WormBase description: The unc-51 gene encodes an activity required for both axonogenesis and sex myoblast migration. WormBase CDS description: serine/threonine protein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y63D3A.8 Aff_Y63D3A.8 P W All gene names: Y63D3A.8; 1O709; CE39301; WBGene00013407; WP:CE39301
Y69A2AR.30 Aff_Y69A2A_2326.A P W All gene names: mdf-2; Y69A2AR.30; Y69A2AR.30a.1; Y69A2AR.30a.2; Y69A2A_2326.A; 4D402; CE26559; CE30468; NM_171291; WBGene00003161; WP:CE26559; WP:CE30468
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

Y75B8A.31 Aff_Y75B8A.OO P W All gene names: Y75B8A.31; 3N443; CE23042; WBGene00013561; WP:CE23042
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y82E9BR.2 Aff_Y119D3_457.A P W All gene names: Y82E9BR.2; 3C531; CE23392; WBGene00022335; WP:CE23392
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                 
                                              Climbing, Wang et al 2003  S3  genes pass one-way                                  
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

Y87G2A.6 Aff_Y87G2A.K P W All gene names: cyn-15; cyp-15; Y87G2A.6; Y87G2A.6.1; Y87G2A.6.2; 1O158; CE24686; NM_060977; WBGene00000891; WP:CE24686 WormBase description: cyp-15 encodes a little-characterized cyclophilin homolog. WormBase CDS description: cyclophilin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

ZC13.3 Aff_ZC13.3 P W All gene names: ZC13.3; CE14988; WBGene00022504; WP:CE14988; XB502
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC518.3 Aff_ZC518.3 P W All gene names: ccr-4; ZC518.3; 4N135; CE31743; CE31744; CE31745; NM_069954; WBGene00000376; WP:CE31743; WP:CE31744; WP:CE31745 WormBase description: alcohol dehydrogenase transcription effector like
ZC84.3 Aff_ZC84.3 P W All gene names: ZC84.3; 3K276; CE15022; WBGene00013847; WP:CE15022
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

ZC84.6 Aff_ZC84.6 P W All gene names: ZC84.6; 3K284; CE15024; WBGene00013849; WP:CE15024 WormBase description: Serine protease inhibitor
ZK1290.4 Aff_ZK1290.4 P W All gene names: gei-21; nfi-1; ZK1290.4; ZK1290.4b.1; ZK1290.4b.2; 2H831; CE37597; CE38016; CE38017; WBGene00003592; WP:CE37597; WP:CE38016; WP:CE38017 WormBase description: Nuclear factor 1
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK809.5 Aff_ZK809.5 P W All gene names: ZK809.5; 4M423; CE28874; CE33911; WBGene00014087; WP:CE28874; WP:CE33911
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK856.1 Aff_ZK856.1 P W All gene names: cul-5; ZK856.1; ZK856.1.1; ZK856.1.2; 5K663; CE06658; NM_073215; WBGene00000840; WP:CE06658 WormBase description: cul-5 encodes a cullin, orthologous to vasopressin-activated calcium-mobilizing receptor-1 in mammals, that is thought to regulate the cell cycle by virtue of its paralogy to cul-1 and cul-2; however, CUL-5 is dispensable for viability and gross morphology in mass RNAi screens, and does not appear to interact with any of 17 Skp1-related proteins (SKR-1 through SKR-21). WormBase CDS description: Cullin family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated