Hill et al 2000, developmentally modulated cluster, 91 genes

Gene list file name:Hill2000_T1_cluster2-6.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,6)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_F15A4.1 Aff_F15A4.1 P W
AFF_F15D4.3 Aff_F15D4.3 P W
AFF_F52E1.12 Aff_F52E1.12 P W
AFF_T08A9.2 Aff_T08A9.2 P W
B0334.1 Aff_B0334.1 P W All gene names: B0334.1; B0334.1.1; B0334.1.2; 2L776; CE02932; WBGene00007142; WP:CE02932 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

B0432.4 Aff_B0432.4 P W All gene names: B0432.4; 2A577; CE32102; WBGene00015186; WP:CE32102 WormBase description: mitochrondrial 2-oxoglutarate/malate carrier protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

B0454.5 Aff_B0454.5 P W All gene names: B0454.5; 2D329; CE37697; WBGene00015196; WP:CE37697
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

B0513.3 Aff_B0513.3 P W All gene names: rpl-29; B0513.3; B0513.3.1; B0513.3.2; 4O647; CE15559; NM_070270; WBGene00004443; WP:CE15559 WormBase description: rpl-29 encodes a large ribosomal subunit L29 protein; by homology, RPL-29 is predicted to function in protein biosynthesis; in C. elegans, loss of rpl-29 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities. WormBase CDS description: 60S ribosomal protein L29
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C01G6.7 Aff_C01G6.7 P W All gene names: C01G6.7; 2J583; CE00869; WBGene00007228; WP:CE00869 WormBase description: 4-coumarate-coA ligase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              list of genes in cluster D, Reinke et al 2004, GO                                  
                                              categories, Wang et al 2003  S3  genes pass one-way                                
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

C06G3.11 Aff_C06G3.11 P W All gene names: tin-9.1; C06G3.11; C06G3.11b.1; C06G3.11b.2; 4H808; CE07987; CE33518; WBGene00006572; WP:CE07987; WP:CE33518; tim9a; tim9b WormBase description: tin-9 encodes a member of the Tim10/DDP family of zinc finger proteins, a family of proteins typically involved in mitochondrial protein import, and localized to the mitochondrial intermembrane space.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C08E3.1 Aff_C08E3.1 P W All gene names: C08E3.1; 2B925; CE08004; WBGene00015593; WP:CE08004
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes                                                                              

C09B9.1 Aff_C09B9.1 P W All gene names: C09B9.1; 4F805; CE06793; WBGene00015626; WP:CE06793
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C11H1.9 Aff_C11H1.5 P W All gene names: C11H1.9; CE05264; CE37316; WBGene00023500; WP:CE05264; WP:CE37316; XO938
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C15H9.9 Aff_C15H9.9 P W All gene names: C15H9.9; C15H9.9.1; C15H9.9.2; CE04001; WBGene00015803; WP:CE04001; XG746
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C18B2.3 Aff_C18B2.3 P W All gene names: C18B2.3; CE27077; WBGene00015954; WP:CE27077; XE221
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C18E9.4 Aff_C18E9.4 P W All gene names: C18E9.4; 2J254; CE05296; WBGene00007684; WP:CE05296
C24H10.5 Aff_C24H10.5 P W All gene names: uvt-2; C24H10.5; CE29674; NM_076463; WBGene00006861; WP:CE29674; XF690 WormBase description: uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin; mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. WormBase CDS description: EF-hand calcium binding protein
C29F4.1 Aff_C29F4.1 P W All gene names: col-125; C29F4.1; C29F4.1.1; C29F4.1.2; 4L991; CE03038; NM_069706; WBGene00000699; WP:CE03038 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C30E1.5 Aff_C30E1.5 P W All gene names: fbxb-114; C30E1.5; CE08472; WBGene00016254; WP:CE08472; XR533
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C30H6.7 Aff_C30H6.7 P W All gene names: C30H6.7; 4S325; CE15651; WBGene00007824; WP:CE15651 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: 2-oxo acid dehydrogenases acyltransferase (catalytic domain)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C32D5.8 Aff_C32D5.8 P W All gene names: C32D5.8; C32D5.8a.1; C32D5.8a.2; 2G632; CE01848; CE37326; WBGene00016316; WP:CE01848; WP:CE37326 WormBase description: Thioredoxin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

C47D2.2 Aff_C47D2.2 P W All gene names: cdd-1; tag-17; C47D2.2; CE06962; NM_076983; WBGene00000391; WP:CE06962; XI826 WormBase description: cdd-1 encodes a cytidine deaminase that contains a zinc-binding region; expressed in the intestine. WormBase CDS description: cytidine deaminase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, wt herm vs wt herm                                    
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

DY3.1 Aff_DY3.1 P W All gene names: tim-13; tin-13; DY3.1; 1J336; CE15745; NM_059969; WBGene00006574; WP:CE15745; tim13
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

EGAP4.1 Aff_EGAP4.1 P W All gene names: EGAP4.1; CE07012; WBGene00017149; WP:CE07012; XJ344 WormBase description: transposase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon                                                                     

F09D12.1 Aff_F09D12.1 P W All gene names: grd-10; F09D12.1; 4E207; CE16971; NM_067946; WBGene00001699; WP:CE16971 WormBase description: grd-10 encodes a protein that contains a novel Ground domain that is closely related to GRD-5.
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F09G8.6 Aff_F09G8.6 P W All gene names: col-91; F09G8.6; 3J348; CE00141; NM_066413; WBGene00000666; WP:CE00141 WormBase description: Cuticle collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Jones et al 2001  T3 20 most abundant                                      
                                              Mixed-stage, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

F13B6.3 Aff_F13B6.3 P W All gene names: F13B6.3; F13B6.3.1; F13B6.3.2; 4I228; CE31169; WBGene00017418; WP:CE31169
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order                                  

F14F11.2 Aff_F14F11.2 P W All gene names: F14F11.2; 2I584; CE03210; WBGene00008820; WP:CE03210
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated                                                                          

F21D5.8 Aff_F21D5.8 P W All gene names: F21D5.8; 4J504; CE03250; WBGene00009013; WP:CE03250
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F33A8.2 Aff_F33A8.2 P W All gene names: nlp-18; F33A8.2; F33A8.2.1; F33A8.2.2; F33A8.2.3; 2L318; CE32885; NM_063964; WBGene00003756; WP:CE32885 WormBase description: nlp-18 encodes four predicted neuropeptide-like proteins; in C. elegans, nlp-18 is part of the FAFA neuropeptide family that also contains nlp-20; nlp-18 is expressed in a variety of neurons, including ASI, NSM, four head neurons, two tail neurons, and two anterior pharyngeal neurons; nlp-18 expression is also detected in the spermatheca, the rectal gland, and the intestine; as loss of nlp-18 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-18-encoded peptides in development and/or behavior is not yet known.
F38B2.4 Aff_F38B2.4 P W All gene names: F38B2.4; F38B2.4.1; F38B2.4.2; CE02218; WBGene00009531; WP:CE02218; XL906 WormBase description: F38B2.4 is orthologous to the human gene ADENYLATE KINASE 1 (AK1; OMIM:103000), which when mutated leads to hemolytic anemia. WormBase CDS description: adenylate kinase
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              Romagnolo et al 2002  Fig3b Metabolism, Wang et al 2003                            
                                               S4 Climbing, Wang et al 2003  S3  genes pass one-way                              
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

F41E7.8 Aff_F41E7.8 P W All gene names: cnc-8; F41E7.8; CE19867; WBGene00009624; WP:CE19867; XK925
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F41F3.3 Aff_F41F3.3 P W All gene names: F41F3.3; F41F3.3.1; F41F3.3.2; 5F126; CE07217; WBGene00018297; WP:CE07217 WormBase description: cuticlin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster B, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

F41G3.1 Aff_F41G3.1 P W All gene names: F41G3.1; F41G3.1.1; F41G3.1.2; 2H55; CE01282; WBGene00018298; WP:CE01282
F44G4.2 Aff_F44G4.2 P W All gene names: F44G4.2; F44G4.2.1; F44G4.2.2; 2J287; CE02229; WBGene00009712; WP:CE02229
F45D11.14 Aff_F45D11_40.B P W All gene names: F45D11.14; 2B294; CE23736; WBGene00018459; WP:CE23736
F45E12.5 Aff_F45E12.4 P W All gene names: F45E12.5; F45E12.5b.1; F45E12.5b.2; 2H598; CE02741; CE32049; WBGene00018475; WP:CE02741; WP:CE32049
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45E4.8 Aff_F45E4.8 P W All gene names: nlp-20; F45E4.8; F45E4.8.1; F45E4.8.2; 4I406; CE10506; NM_068843; WBGene00003758; WP:CE10506 WormBase description: nlp-20 encodes a predicted neuropeptide of the FAFA family; expressed in pharyngeal neurons.
F46C5.2 Aff_F46C5.2 P W All gene names: F46C5.2; 2J116; CE03344; WBGene00009779; WP:CE03344
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F47B7.1 Aff_F47B7.1 P W All gene names: F47B7.1; F47B7.1.1; F47B7.1.2; CE02743; WBGene00018532; WP:CE02743; XE407
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F53B3.6 Aff_F53B3.6 P W All gene names: F53B3.6; CE04446; WBGene00018744; WP:CE04446; XD483 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F53F1.4 Aff_F53F1.4 P W All gene names: F53F1.4; 5N891; CE10938; WBGene00009982; WP:CE10938 WormBase description: cuticlin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Jones et al 2001  T3 20 most abundant                                      
                                              Mixed-stage, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F58A3.5 Aff_F58A3.5 P W All gene names: F58A3.5; CE11360; WBGene00010225; WP:CE11360; XL624 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Wang et al 2003  S5 genes common to                                  
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

K02E11.5 Aff_K02E11.5 P W All gene names: K02E11.5; 5O733; CE11652; WBGene00010514; WP:CE11652
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

K07E8.3 Aff_K07E8.3 P W All gene names: sdz-24; K07E8.3; 2A949; CE29512; WBGene00019495; WP:CE29512
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S3  genes pass one-way ANOVA, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

K08F8.4 Aff_K08F8.4 P W All gene names: bas-2; pah-1; K08F8.4; 2J54; AAH/1; CE21050; NM_063462; WBGene00000240; WP:CE21050 WormBase description: The bas-2 gene encodes an ortholog of the human gene PHENYLALANINE HYDROXYLASE (PAH), which when mutated leads to phenylketonuria (OMIM:261600). WormBase CDS description: phenylalanine-4-hydroxylase (PH4H)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

K09E2.3 Aff_K09E2.3 P W All gene names: K09E2.3; CE02816; WBGene00019572; WP:CE02816; XJ293
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b Unkown, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

M02D8.1 Aff_M02D8.1 P W All gene names: M02D8.1; CE04757; WBGene00019727; WP:CE04757; XJ383
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

M176.6 Aff_M176.6 P W All gene names: kin-15; M176.6; 2J722; CE12470; CE30290; NM_171029; NM_171855; WBGene00002199; WP:CE12470; WP:CE30290 WormBase description: tyrosine-protein kinase (KIN15/KIN16 subfamily)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R07E4.3 Aff_R07E4.3 P W All gene names: R07E4.3; CE04818; WBGene00019937; WP:CE04818; XG573
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

R07H5.3 Aff_R07H5.3 P W All gene names: R07H5.3; 4L951; CE12554; CE35186; WBGene00011123; WP:CE12554; WP:CE35186
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

R11A8.5 Aff_R11A8.5 P W All gene names: R11A8.5; 4L132; CE06303; WBGene00011239; WP:CE06303 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

R13A5.6 Aff_R13A5.6 P W All gene names: R13A5.6; 3I654; CE01378; WBGene00020049; WP:CE01378
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T01C8.2 Aff_T01C8.2 P W All gene names: T01C8.2; CE07459; WBGene00020143; WP:CE07459; XR401
T03F1.3 Aff_T03F1.3 P W All gene names: T03F1.3; 1E435; CE13100; WBGene00020185; WP:CE13100 WormBase description: T03F1.3 is orthologous to the human gene PHOSPHOGLYCERETE KINASE 1 (PGK1; OMIM:311800), which when mutated leads to hemolytic anemia and neurologic disturbances. WormBase CDS description: phosphoglycerate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T03F6.1 Aff_T03F6.1 P W All gene names: qdpr-1; T03F6.1; 3O483; CE16335; WBGene00011398; WP:CE16335 WormBase description: The T03F6.1 gene encodes an ortholog of the human gene QUINOID DIHYDROPTERIDINE REDUCTASE (QDPR; DHPR), which when mutated leads to phenylketonuria II (OMIM:261630). WormBase CDS description: Alcohol/other dehydrogenases, short chain type
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T06E4.4 Aff_T06E4.4 P W All gene names: col-147; T06E4.4; 5K112; CE06370; NM_073085; WBGene00000720; WP:CE06370 WormBase description: collagen
T10B11.1 Aff_T10B11.1 P W All gene names: pcbd-1; T10B11.1; 1H529; CE39768; WBGene00020397; WP:CE39768 WormBase description: T10B11.1 is orthologous to the human gene PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE (PCBD or TCF1; OMIM:126090), which when mutated leads to hyperphenylalaninemia with primapterinuria.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T11B7.3 Aff_T11B7.3 P W All gene names: col-118; T11B7.3; 4J613; CE03649; NM_069131; WBGene00000692; WP:CE03649 WormBase description: cuticle collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T11B7.4 Aff_T11B7.4 P W All gene names: alp-1; eat-1; T11B7.4; 4J625; CE03650; CE35944; CE35945; CE35946; CE39401; NM_069132; NM_069133; WBGene00001132; WP:CE03650; WP:CE35944; WP:CE35945; WP:CE35946; WP:CE39401 WormBase description: LIM domains
T13H5.5 Aff_T13H5.5 P W All gene names: T13H5.5; 2I817; CE03656; WBGene00011759; WP:CE03656
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen                                        

T14A8.2 Aff_T14A8.2 P W All gene names: T14A8.2; 4I586; CE29475; WBGene00020497; WP:CE29475
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, IVb male soma enriched genes,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T14B4.2 Aff_T14B4.2 P W All gene names: T14B4.2; 2H27; CE04952; WBGene00020499; WP:CE04952
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

T14G10.3 Aff_T14G10.3 P W All gene names: T14G10.3; 4K923; CE35618; WBGene00011773; WP:CE35618 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T26C5.4 Aff_T26C5.4 P W All gene names: T26C5.4; 2J540; CE03740; WBGene00012034; WP:CE03740
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T27A1.4 Aff_T27A1.4 P W All gene names: T27A1.4; 2A819; CE14211; WBGene00020836; WP:CE14211 WormBase description: ionic channel protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T27D12.1 Aff_T27D12.1 P W All gene names: T27D12.1; T27D12.1.1; T27D12.1.2; T27D12.1.3; 2M135; CE06516; WBGene00012085; WP:CE06516 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

T28B4.3 Aff_T28B4.3 P W All gene names: T28B4.3; CE14325; WBGene00020886; WP:CE14325; XH214
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes, Wang et al 2003  S3  genes pass                               
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

T28C6.4 Aff_T28C6.4 P W All gene names: T28C6.4; 4J588; NM_069125; WBGene00000691 WormBase description: cuticle collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

W05G11.6 Aff_W05G11.6 P W All gene names: W05G11.6; W05G11.6a.1; W05G11.6a.2; W05G11.6b.1; W05G11.6b.2; W05G11.6b.3; W05G11.6d.1; W05G11.6d.2; W05G11.6d.3; 3A682; CE14634; CE19610; CE32740; CE32741; WBGene00021043; WP:CE14634; WP:CE19610; WP:CE32740; WP:CE32741 WormBase description: phosphoenolpyruvate carboxykinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y105C5A.12 Aff_Y105C5.K P W All gene names: Y105C5A.12; 4Q402; CE23193; WBGene00013636; WP:CE23193
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

Y113G7A.4 Aff_Y113G7A.O P W All gene names: ncx-1; Y113G7A.4; 5U576; CE23275; NM_075478; WBGene00003566; WP:CE23275
Y11D7A.10 Aff_Y11D7A.10 P W All gene names: Y11D7A.10; Y11D7A.10.1; Y11D7A.10.2; 4K24; CE20193; WBGene00012434; WP:CE20193
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y38A8.2 Aff_Y38A8.2 P W All gene names: pbs-3; Y38A8.2; Y38A8.2.1; Y38A8.2.2; 2F244; CE07571; NM_062512; WBGene00003949; WP:CE07571 WormBase description: pbs-3 encodes a B-type subunit of the 26S proteasome's 20S protease core particle; by homology, PBS-3 is predicted to function in ATP/ubiquitin-dependent nonlysosomal protein degradation; loss of pbs-3 activity via large-scale RNAi screens indicates that, in C. elegans, PBS-3 is required for embryonic and germline development, movement, normal body coloration, and normal body morphology. WormBase CDS description: Peptidase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, Golden et al 2004, N2 differentially                               
                                              expressed gen, McCarroll et al 2004  SFig5 conserved w/                            
                                              yeast, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y39G8B.9 Aff_Y39G8B.B P W All gene names: Y39G8B.9; 2O271; CE21736; WBGene00012728; WP:CE21736
Y45F10A.5 Aff_Y45F10A.5 P W All gene names: nlp-17; Y45F10A.5; 4O270; CE18396; NM_070202; WBGene00003755; WP:CE18396
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y48C3A.3 Aff_Y48C3A.G P W All gene names: Y48C3A.3; 2N599; CE22138; WBGene00012987; WP:CE22138
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, wt herm vs wt herm enriched                             
                                              gen, Reinke et al 2004, IVb male soma enriched genes                               

Y48E1B.8 Aff_Y48E1B.8 P W All gene names: Y48E1B.8; 2N877; CE14866; WBGene00013007; WP:CE14866
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, herm soma enriched genes, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                 
                                              daf-16 Resveratrol                                                                 

Y49A3A.5 Aff_Y49A3A.D P W All gene names: cyn-1; cyp-1; Y49A3A.5; Y49A3A.5.1; Y49A3A.5.2; 5O837; CE22213; NM_074160; WBGene00000877; WP:CE22213 WormBase description: cyp-1 encodes a functional cyclophilin that is predicted to be secreted; expression increases as worms progress from the L1 larval stage to the adult stage. WormBase CDS description: Peptidyl-prolyl cis-trans isomerase
Y65B4BR.5 Aff_Y65B4B_10.D P W All gene names: Y65B4BR.5; Y65B4BR.5a.1; Y65B4BR.5a.2; Y65B4BR.5a.3; Y65B4BR.5b.1; Y65B4BR.5b.2; Y65B4BR.H; 1B9; CE22740; CE33239; WBGene00022042; WP:CE22740; WP:CE33239
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y71H2AM.23 Aff_Y71H2_378.A P W All gene names: EF-Tu1; tufm-1; Y71H2AM.23; Y71H2AM.23.1; Y71H2AM.23.2; Y71H2AM.23.3; Y71H2AM.A; 3D902; CE27322; WBGene00007000; WBGene00022187; WP:CE27322
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, list                             
                                              of genes in cluster C, Wang et al 2003  S5 genes common                            
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

Y71H2AM.4 Aff_Y71H2_388.D P W All gene names: Y71H2AM.4; Y71H2AM.4.1; Y71H2AM.4.2; 3D877; CE22940; WBGene00022169; WP:CE22940
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

Y75B12B.3 Aff_Y75B12B.3 P W All gene names: Y75B12B.3; 5P664; CE20372; WBGene00013568; WP:CE20372
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y75B12B.5 Aff_Y75B12B.5 P W All gene names: cyn-3; cyp-3; Y75B12B.5; Y75B12B.5.1; Y75B12B.5.2; 5P671; CE20374; NM_074350; WBGene00000879; WP:CE20374 WormBase description: cyp-3 encodes an abundantly expressed cyclophilin A isoform with peptidyl-prolyl isomerase activity in vitro, which closely resembles the prototypical CypA and is thus likely to be a member of the cytosolic CsA-binding cyclophilin subfamily; cyp-3 is exclusively expressed in the single anterior excretory cell, and is dispensable for viability and gross morphology in mass RNAi screens. WormBase CDS description: Peptidyl-prolyl cis-trans isomerases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast                                                                           

ZC168.5 Aff_ZC168.5 P W All gene names: grl-21; ZC168.5; 4L503; CE06571; NM_069587; WBGene00001730; WP:CE06571
ZC373.7 Aff_ZC373.7 P W All gene names: col-176; ZC373.7; CE02380; NM_077291; WBGene00000749; WP:CE02380; XK697 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, wt herm vs                              
                                              wt herm enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster B, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

ZK180.5 Aff_ZK180.5 P W All gene names: ZK180.5; ZK180.5b.1; ZK180.5b.2; 4F280; CE07623; CE28179; CE31746; WBGene00022679; WP:CE07623; WP:CE28179; WP:CE31746
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

ZK550.3 Aff_ZK550.3 P W All gene names: ZK550.3; ZK550.3.1; ZK550.3.2; 4S197; CE37464; WBGene00013997; WP:CE37464
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S5 genes common to                            
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

ZK783.2 Aff_ZK783.2 P W All gene names: ZK783.2; 3I730; CE34466; WBGene00022817; WP:CE34466 WormBase description: tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

ZK856.7 Aff_ZK856.7 P W All gene names: ZK856.7; 5K683; CE06664; WBGene00014108; WP:CE06664
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK973.10 Aff_ZK973_14.B P W All gene names: lpd-5; ZK973.10; ZK973.10.1; ZK973.10.2; ZK973.B; ZK973_14.B; 1E940; CE40009; NM_058958; WBGene00003061; WP:CE40009 WormBase description: lpd-5 is orthologous to the human gene NADH DEHYDROGENASE (UBIQUINONE) FE-S PROTEIN 4 (18KD) (NADH-COENZYME Q REDUCTASE) (NDUFS4; OMIM:602694), which when mutated leads to NADH:ubiquinone oxidoreductase (complex I) deficiency.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA