Baugh et al 2005, PAL-1 target_score 2-4, 145 genes

Gene list file name:Baugh2005_SDS_PAL-1_target_score2-4.txt
Type of gene identifier:Affymetrix probe set
Description:Baugh et al 2005, Supplymental Dataset, PAL-1 target genes, score 2,3,4  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

172779_X_AT 172779_x_at P W
184066_AT 184066_at P W
187937_S_AT 187937_s_at P W
190382_S_AT 190382_s_at P W
AH9.2 185507_at P W All gene names: crn-4; AH9.2; CE03858; NM_076014; WBGene00000797; WP:CE03858; XC876
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

B0024.10 173957_s_at P W All gene names: B0024.10; B0024.10.1; B0024.10.2; 5K796; CE05154; WBGene00007100; WP:CE05154
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C01F1.3 184019_at P W All gene names: phi-41; C01F1.3; C01F1.3a.1; C01F1.3a.2; 2E587; CE06744; CE39553; WBGene00015298; WP:CE06744; WP:CE39553
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Metabolism,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C02B8.2 187168_s_at P W All gene names: C02B8.2; CE03891; WBGene00015321; WP:CE03891; XI761
C03H5.2 181965_at P W All gene names: C03H5.2; 2A681; CE32110; WBGene00015404; WP:CE32110
C05C8.3 192137_at P W All gene names: dao-1; fkb-3; C05C8.3; 5H707; CE07921; NM_072434; WBGene00001428; WP:CE07921 WormBase description: fkb-3 encodes a peptidylprolyl cis/trans isomerase homologous to mammalian FK506 immunosuppressant-binding protein 9; FKB-3 expression is positively regulated by signaling through the DAF-2 insulin receptor-like pathway and the activity of the DAF-16 fork-head transcription factor suggesting that FKB-3 could play a role in metabolism and longevity; however, as loss of FKB-3 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of FKB-3 in C. elegans development and/or behavior is not yet known; FKB-3 contains a predicted endoplasmic reticulum (ER) retention sequence and is thus proposed to localize to the ER. WormBase CDS description: FKBP-binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C05C8.6 173565_s_at P W All gene names: C05C8.6; 5H716; CE07924; WBGene00015463; WP:CE07924
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C05D11.12 171813_x_at P W All gene names: let-721; C05D11.12; C05D11.12.1; C05D11.12.2; 3H534; CE29662; NM_066014; WBGene00002855; WP:CE29662 WormBase description: The let-721 gene encodes an ortholog of the human gene SIMILAR TO ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE (ETFDH), which when mutated leads to glutaricaciduria type IIC (OMIM:231675). WormBase CDS description: YAAS
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Oxidation,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C05D9.3 183557_at P W All gene names: C05D9.3; CE35381; WBGene00015472; WP:CE35381; XB733
C06A8.3 191204_s_at P W All gene names: C06A8.3; 2I81; CE02454; WBGene00015514; WP:CE02454 WormBase description: 17k antigen (O. volvulus)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Zhang et al 2002, T1                                
                                              mec-3 dependent genes                                                              

C10F3.1 179701_s_at P W All gene names: C10F3.1; 5G479; CE08066; WBGene00015677; WP:CE08066
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C14A4.3 186876_at P W All gene names: C14A4.3; CE32796; NM_063881; WBGene00007556; WP:CE32796
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Romagnolo et al 2002  Fig3b                               
                                              Metabolism, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C14B1.1 174408_s_at P W All gene names: pdi-1; C14B1.1; C14B1.1.1; C14B1.1.2; 3E790; CE00897; NM_065345; WBGene00003962; WP:CE00897 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: protein disulfide isomerase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 UPR genes, Wang                             
                                              et al 2003  S4 Climbing, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

C16B8.1 192718_s_at P W All gene names: lin-18; C16B8.1; C16B8.1.1; C16B8.1.2; CE27692; NM_076283; WBGene00003007; WP:CE27692; XE579 WormBase description: lin-18 encodes a predicted receptor tyrosine kinase that is a member of the Ryk/Derailed family of tyrosine kinase-related receptors (OMIM:600524, mutations in humans are associated with cleft palate); in C. elegans, LIN-18 is required for establishing the polarity of the secondary vulval cell lineage produced by the P7.p vulval precursor cell; LIN-18 may be a receptor for Wnt-like signaling molecules, and in vulval development appears to function independently of, but in parallel with, LIN-17, a Frizzled-like Wnt receptor, also required for proper orientation of the P7.p lineage; a lin-18 reporter gene is expressed in body wall muscle, neurons, and the developing vulva; in the vulva, expression is detected in P5.p, P6.p, and P7.p and all of their descendants during the L3 and L4 larval stages. WormBase CDS description: protein tyrosine kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

C26H9A.1 173717_s_at P W All gene names: vha-7; C26H9A.1; C26H9A.B; 4N413; CE30882; NM_070018; WBGene00006916; WP:CE30882
                                              
Member of lists (Publications lists):
                                              McElwee et al 2003  T1 targets of                                 
                                              daf-16, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, mixed oogenesis soma                                                         

C27A7.5 174881_s_at P W All gene names: C27A7.5; 5M636; CE20527; CE20528; CE20529; WBGene00007756; WP:CE20527; WP:CE20528; WP:CE20529 WormBase description: Asparaginase ; Ank repeat
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

C28A5.1 177739_s_at P W All gene names: C28A5.1; 3F520; CE00675; WBGene00007788; WP:CE00675
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

C31C9.2 192474_s_at P W All gene names: C31C9.2; C31C9.2.1; C31C9.2.2; 2N928; CE08497; WBGene00007836; WP:CE08497 WormBase description: C31C9.2 is orthologous to the human gene PHOSPHOGLYCERATE DEHYDROGENASE (PHGDH; OMIM:606879), which when mutated leads to phosphoglycerate dehydrogenase deficiency. WormBase CDS description: D-3-Phosphoglycerate dehydrogenase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

C32D5.3 187369_s_at P W All gene names: C32D5.3; 2G608; CE01843; WBGene00016311; WP:CE01843 WormBase description: C32D5.3 encodes an ortholog of ROLLING BLACKOUT (RBO; also called CMP44E or STAMPHA), a eukaryotic protein required for sustained phospholipase C activity during Drosophila phototransduction; RBO homologs have two predicted transmembrane helices, are significantly similar to several acylglycerol lipases, and share motifs characteristic of carboxyesterases and lipases.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C32E8.8 188102_s_at P W All gene names: ptr-2; C32E8.8; 1E358; CE08532; NM_058820; WBGene00004217; WP:CE08532
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Jones et al 2001  Non dauer genes P<0.05, Reinke et al                             
                                              2004, list of genes in cluster F, Reinke et al 2004,                               
                                              fem1 enriched genes, Reinke et al 2004, list of genes                              
                                              in cluster order, Reinke et al 2004, oogenesis enriched                            
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C32F10.5 193484_s_at P W All gene names: hmg-3; C32F10.5; 1G392; CE08542; NM_059287; WBGene00001973; WP:CE08542 WormBase description: single-strand recognition protein
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C33H5.14 187656_s_at P W All gene names: ntp-1; C33H5.14; C33H5.14.1; C33H5.14.2; 4I558; CE04157; NM_068888; WBGene00016380; WP:CE04157
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                            
                                              S2 Resveratrol regulate WT                                                         

C33H5.7 183952_s_at P W All gene names: C33H5.7; 4I539; CE04150; WBGene00016374; WP:CE04150
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, list of genes in cluster F, Reinke et al 2004, wt                            
                                              vs glp-4 enriched genes, Reinke et al 2004, list of                                
                                              genes in cluster order, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

C34B2.10 184975_at P W All gene names: phi-56; C34B2.10; C34B2.10.1; C34B2.10.2; 1L258; CE16898; WBGene00016395; WP:CE16898
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C34B2.7 188950_s_at P W All gene names: C34B2.7; C34B2.7.1; C34B2.7.2; 1L260; CE16895; WBGene00016392; WP:CE16895 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: flavoprotein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C35D10.1 187615_at P W All gene names: C35D10.1; 3F971; CE29951; WBGene00016439; WP:CE29951
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, ViswanathanM et al 2005                             
                                              S2 sir-2.1 regulated                                                               

C38D4.6 174043_at P W All gene names: ceh-3; nob-2; pal-1; C38D4.6; C38D4.6a.1; C38D4.6a.2; C38D4.6b.1; C38D4.6b.2; 3F896; CE05383; CE27837; NM_065590; WBGene00003912; WP:CE05383; WP:CE27837 WormBase description: pal-1 encodes a homeodomain protein that is the C. elegans Caudal ortholog; PAL-1 is required maternally and embryonically for cell fate specification and posterior patterning during embryogenesis; PAL-1 is also required postembryonically for fate specification of the posterior V6 neuroectoblast during male tail development; PAL-1 is expressed in posterior blastomeres beginning at the four-cell stage of embryogenesis and its expression continues during embryogenesis in posterior-derived tissues and cells undergoing movement or forming midline structures; pal-1 is subject to both transcriptional and translational regulation.
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Jones et al 2001  Non dauer genes P<0.05, McCarroll et                             
                                              al 2004  SFig1-4 conserved w/ Drosoph, Reinke et al                                
                                              2004, fem1 enriched genes, Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, oogenesis                               
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E                                 

C43E11.11 173216_s_at P W All gene names: C43E11.11; 1E821; CE32607; WBGene00016608; WP:CE32607
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C44C1.1 182166_at P W All gene names: C44C1.1; CE35432; WBGene00016641; WP:CE35432; XB601
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C44C10.8 192707_at P W All gene names: hlh-18; hlh-22; hnd-1; C44C10.8; CE05415; NM_077551; WBGene00001981; WP:CE05415; XM301 WormBase description: hnd-1 encodes a Hand bHLH transcription factor required for normal viability, gonadogenesis, and posterior body morphology; HND-1 is required for the formation of both somatic gonadal precursors and primordial germ cells, but not for later gonadogenesis; HND-1 is expressed embryogenesis in embryonic mesodermal precursor cells generating (mostly) body wall muscle, in somatic gonad precursor cells, and in some unidentified head cells; the primary defect in hnd-1 mutants may be, nonautonomously, in mesodermal precursor cells; somatic gonad precursor cells are normally generated in hnd-1 mutants, but not maintained. WormBase CDS description: Helix-loop-helix DNA-binding domain
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes                                 

C44H4.2 193319_at P W All gene names: sym-5; C44H4.2; CE08723; NM_078024; WBGene00006370; WP:CE08723; XP197 WormBase description: sym-5 encodes a predicted transmembrane protein that contains 13 contiguous leucine-rich repeats (LRRs) and that is similar to SYM-1, a secreted protein involved in muscle attachment; sym-5 activity appears to be required for embryogenesis and functionally overlaps with that of sym-1 and mec-8 in affecting muscle attachment; in addition, loss of sym-5 activity via RNA-mediated interference (RNAi) in a hypersensitized strain indicates that SYM-5 may also be required for locomotion, body morphology, and normal rates of postembryonic growth. WormBase CDS description: Drosophila chaoptin protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C47D12.2 181979_at P W All gene names: C47D12.2; C47D12.2.1; C47D12.2.2; 2L967; CE20567; WBGene00008136; WP:CE20567 WormBase description: C47D12.2 encodes an ortholog of human FLJ20071/FLJ90130 (dymeclin, OMIM:607461, mutated in Dyggve-Melchior-Clausen dysplasia and Smith-McCort dysplasia), which has no obvious function in mass RNAi assays
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated                                                      

C47E12.8 192157_at P W All gene names: CeCRMP/DHP-2; dhp-2; C47E12.8; 4K745; CE05452; NM_069396; WBGene00000964; WP:CE05452 WormBase description: The dhp-2 gene encodes an ortholog of the human gene DIHYDROPYRIMIDINASE (DPYS), which when mutated leads to dihydropyrimidinuria (OMIM:222748). WormBase CDS description: Ulip like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C47G2.4 179676_s_at P W All gene names: C47G2.4; 2L582; CE02167; WBGene00008165; WP:CE02167
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

C50F2.6 193656_s_at P W All gene names: dao-8; fkb-5; C50F2.6; C50F2.6a.1; C50F2.6a.2; 1E466; CE08912; CE27878; NM_058856; NM_058857; WBGene00001430; WP:CE08912; WP:CE27878 WormBase description: fkb-5 encodes a homolog of human FK506 binding protein 9.
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              Romagnolo et al 2002  Fig3b others, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                    
                                              Climbing, Wang et al 2003  S3  genes pass one-way                                  
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

C54F6.8 190876_at P W All gene names: nhr-171; C54F6.8; 5H991; CE17603; WBGene00016926; WP:CE17603 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C55C2.1 192307_at P W All gene names: C55C2.1; 1D137; CE16948; WBGene00016948; WP:CE16948 WormBase description: zinc-finger transcription factor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, parrerning involved                                
                                              PAL-1 target, Baugh et al 2005, PAL-1 target genes                                 

C55C2.3 180088_at P W All gene names: C55C2.3; 1D121; CE36638; WBGene00016949; WP:CE36638
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes                                             

D1005.2 182178_at P W All gene names: D1005.2; CE29741; WBGene00016996; WP:CE29741; XC81
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

D1081.2 188706_at P W All gene names: unc-120; D1081.2; 1J37; CE05534; NM_059895; WBGene00006844; WP:CE05534 WormBase description: unc-120 encodes a member of the MADS-box family of transcription factors that contains human and Drosophila serum response factor (SRF) and Saccharomyces cerevisiae MCM1 and ARG80; UNC-120 is required for locomotion and muscle development and for formation of the normal number of muscle A and I bands; UNC-120 is also required for maintaining wild-type expression levels of the muscle components actin and myosin; UNC-120 is first expressed in the early embryo in body wall muscle precursors and later is expressed in both body wall and vulval muscles. WormBase CDS description: MADS domain
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order                                         

F07H5.10 175304_at P W All gene names: F07H5.10; 2J98; CE28906; WBGene00008561; WP:CE28906
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

F10C2.2 172864_x_at P W All gene names: kup-1; F10C2.2; 5M514; CE09306; NM_073615; WBGene00002241; WP:CE09306; kup1 WormBase description: kup-1 encodes a novel protein that is conserved in C. briggsae, but contains no other known homologs; kup-1 is the upstream gene in an operon with pkc-1, which encodes two protein kinase C isoforms of the nPKC isotype; the polycistronic kup-1/pkc-1 mRNA is detected at low levels in embryos and larvae, but its expression greatly increases in adults; as loss of kup-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kup-1 in C. elegans development and/or behavior is not yet known. WormBase CDS description: KUP-1 protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F15D4.5 179266_at P W All gene names: F15D4.5; 2N537; CE36131; WBGene00008862; WP:CE36131
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F17C11.7 181481_at P W All gene names: F17C11.7; 5L438; CE05654; CE37354; WBGene00008918; WP:CE05654; WP:CE37354
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F19B10.1 185516_s_at P W All gene names: F19B10.1; 2D975; CE09468; WBGene00017583; WP:CE09468
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F19F10.11 187477_s_at P W All gene names: F19F10.11; 5I62; CE09491; CE09492; WBGene00017607; WP:CE09491; WP:CE09492
F20D1.4 193626_s_at P W All gene names: F20D1.4; CE09497; WBGene00008976; WP:CE09497; XP602 WormBase description: transcriptional activator protein PUR-alpha like
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated                                                                  

F21C3.3 192514_at P W All gene names: tag-202; F21C3.3; 1H856; CE05678; WBGene00009002; WP:CE05678 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: protein kinae C inhibitor 1 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F22E5.1 179856_at P W All gene names: F22E5.1; 2C965; CE09553; WBGene00017703; WP:CE09553
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Wang et al 2003                            
                                               S5 genes common to feeding ANOVA, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA                                                           

F22H10.4 184405_at P W All gene names: F22H10.4; CE09573; WBGene00017728; WP:CE09573; XR296
F25D1.1 189826_at P W All gene names: tag-93; F25D1.1; 5L14; CE05722; CE36134; WBGene00006460; WP:CE05722; WP:CE36134 WormBase description: protein phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F25H2.9 192534_at P W All gene names: pas-5; F25H2.9; 1L143; CE09654; NM_060364; WBGene00003926; WP:CE09654 WormBase description: proteasome zeta chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

F27B3.6 181342_at P W All gene names: F27B3.6; 3H666; CE24925; WBGene00017848; WP:CE24925
F32H2.6 192242_at P W All gene names: phi-46; F32H2.6; 1J574; CE09881; WBGene00009343; WP:CE09881 WormBase description: fatty acid synthase (N-terminus)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F33H2.2 178350_s_at P W All gene names: F33H2.2; 1P619; CE17765; WBGene00009366; WP:CE17765
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, Wang et al 2003  S5                               
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

F35D2.3 182863_at P W All gene names: F35D2.3; 2H861; CE31804; WBGene00018041; WP:CE31804
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Jones et al 2001  Non dauer genes P<0.05                                           

F35G12.12 184803_s_at P W All gene names: F35G12.12; F35G12.12.1; F35G12.12.2; 3F673; CE31499; WBGene00009445; WP:CE31499
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Lund et al 2002  Fig1                                          
                                              aging-regulated genes, Reinke et al 2004, list of genes                            
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F35G12.6 188239_s_at P W All gene names: mab-21; F35G12.6; 3F691; CE32651; NM_065539; WBGene00003112; WP:CE32651 WormBase description: mab-21 encodes a novel protein that is a member of a highly conserved family of proteins with Drosophila and vertebrate orthologs; MAB-21 is cell-autonomously required for specifying the identity of sensory ray 6 in the male tail, and also for backward locomotion, normal body morphology, fecundity, and embryonic morphogenesis; MAB-21 expression begins in embryonic hypodermal cells and continues in larval and adult animals in hypodermis, anterior and ventral cord neurons, some body wall muscles, and ray cells.
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F36H1.6 192633_at P W All gene names: alh-3; F36H1.6; 4L789; CE05817; NM_069653; WBGene00000109; WP:CE05817 WormBase description: alh-3 encodes an aldehyde dehydrogenase predicted to be mitochondrial. WormBase CDS description: formyltetrahydrofolate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F38A5.1 173942_s_at P W All gene names: F38A5.1; 4H346; CE10028; CE33641; WBGene00018160; WP:CE10028; WP:CE33641
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F38E1.7 192368_s_at P W All gene names: mom-2; F38E1.7; 5I837; CE17806; NM_072753; WBGene00003395; WP:CE17806 WormBase description: mom-2 encodes a member of the Wnt family of secreted signaling glycoproteins that is required for induction of endodermal (gut) tissue in the 4-cell stage embryo; MOM-2, required in the inducing blastomere (P2) at the 4-cell stage, may be the ligand for MOM-5, a Frizzled homolog, thought to act in the receiving blastomere (EMS); MOM-2 genetically interacts in the same pathway as KIN-19, but parallel to APR-1; MOM-2 also may be a ligand for LIN-18, a Ryk homolog. WormBase CDS description: WNT family protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F39B3.2 180005_at P W All gene names: F39B3.2; CE30978; WBGene00018191; WP:CE30978; XS184
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

F42D1.2 190977_s_at P W All gene names: F42D1.2; F42D1.2.1; F42D1.2.2; CE10298; WBGene00009628; WP:CE10298; XP411 WormBase description: tyrosine aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

F45D3.1 178955_at P W All gene names: F45D3.1; 5N7; CE10468; WBGene00009721; WP:CE10468
F45E4.2 173043_at P W All gene names: plp-1; F45E4.2; F45E4.2.1; F45E4.2.2; 4I399; CE10494; NM_068840; WBGene00004046; WP:CE10494 WormBase description: plp-1 encodes a protein containing three PUR repeats that are predicted to bind DNA/RNA and has similarity to the mammalian transcription factor pur alpha, and is required for embryonic development, development of the pharynx, and affects formation of the intestine; interacts with an Lef-1 site within the end-1 promoter and binding is regulated by phosphorylation
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Kwon et al 2004 T1 late-induction Ethanol-response,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Romagnolo et al 2002  Fig3b TF,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F52D1.1 190570_at P W All gene names: F52D1.1; CE38522; WBGene00018682; WP:CE38522; XB85 WormBase description: acid alpha-glucosidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F52D10.3 187954_s_at P W All gene names: ftt-2; F52D10.3; F52D10.3a.1; F52D10.3a.2; F52D10.3b.1; F52D10.3b.2; CE03389; CE36489; NM_077537; NM_077538; WBGene00001502; WP:CE03389; WP:CE36489; XM222 WormBase description: 14-3-3 protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, IVb male soma enriched                                 
                                              genes                                                                              

F52H3.1 193937_s_at P W All gene names: let-268; F52H3.1; F52H3.1.1; F52H3.1.2; F52H3.1.3; 2K324; CE03397; NM_063769; WBGene00002497; WP:CE03397 WormBase description: let-268 encodes a procollagen lysyl hydroxylase that processes type IV collagen, a collagen secreted and incorporated into the basement membrane during embryogenesis (and encoded partly by emb-9); LET-268 activity is essential for type IV collagen processing and secretion and for the stability, but not the formation of, the basement membrane that provides mechanical support to body wall muscle once contraction begins; LET-268 also appears to be required for pharyngeal muscle contraction. WormBase CDS description: procollagen-lysine,2-oxoglutarate 5-dioxygenase precusor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F52H3.5 179402_at P W All gene names: F52H3.5; 2K321; CE03401; WBGene00009947; WP:CE03401
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F53A2.4 187905_at P W All gene names: nud-1; F53A2.4; 3O429; CE16096; NM_067348; WBGene00003829; WP:CE16096 WormBase description: nud-1 encodes the C. elegans ortholog of the Aspergillus nidulans nudC, which mediates nuclear migration along Aspergillus hyphae.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F54D10.7 186148_s_at P W All gene names: F54D10.7; 2E110; CE19457; WBGene00018808; WP:CE19457
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F54D5.7 190953_at P W All gene names: F54D5.7; F54D5.7.1; F54D5.7.2; CE03411; NM_064068; WBGene00010052; WP:CE03411 WormBase description: The F54D5.7 gene encodes an ortholog of the human gene GLUTARYL-COENZYME A DEHYDROGENASE (GCDH), which when mutated leads to glutaricaciduria type I (OMIM:231670). WormBase CDS description: acyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F54D8.1 181096_at P W All gene names: dpy-17; F54D8.1; F54D8.1.1; F54D8.1.2; 3G197; CE11066; NM_065685; WBGene00001076; WBGene00018799; WP:CE11066 WormBase description: Uncloned locus that affects body length and outgrowth of posterior canal cell processes.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, IVb male soma enriched genes,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F54D8.3 190851_at P W All gene names: alh-1; F54D8.3; F54D8.3a.1; F54D8.3a.2; F54D8.3b.1; F54D8.3b.2; F54D8.3b.3; 3G169; CE29809; CE32434; NM_065680; NM_181921; WBGene00000107; WP:CE29809; WP:CE32434 WormBase description: alh-1 is orthologous to the human gene ALDEHYDE DEHYDROGENASE 2, MITOCHONDRIAL (ALDH2; OMIM:100650), in which a polymorphism can lead to acute ethanol intolerance.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F54H12.1 184052_s_at P W All gene names: aco-2; F54H12.1; F54H12.1c.1; F54H12.1c.2; 3J65; CE25005; CE30144; CE32436; NM_066337; NM_171200; NM_171885; WBGene00000041; WP:CE25005; WP:CE30144; WP:CE32436 WormBase description: aco-2 encodes an aconitase homolog that is required for embryonic viability, fertility, locomotion, and vulval morphogenesis, and perhaps for normal lifespan; ACO-2 is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F56G4.5 188869_at P W All gene names: F56G4.5; F56G4.5.1; F56G4.5.2; 1L979; CE23786; WBGene00010160; WP:CE23786 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Thioredoxins
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F57C9.4 175534_s_at P W All gene names: F57C9.4; 1F403; CE28474; CE28475; WBGene00019011; WP:CE28474; WP:CE28475
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004, wt                             
                                              vs glp-4 enriched genes, Reinke et al 2004, oogenesis                              
                                              enriched genes, Reinke et al 2004, wt herm vs wt male                              
                                              enriched gen                                                                       

F58B3.5 191555_s_at P W All gene names: mrs-1; F58B3.5; 4M398; CE06007; NM_069795; WBGene00003415; WP:CE06007 WormBase description: mrs-1 encodes a predicted cytoplasmic methionyl-tRNA synthetase (MetRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of methionine to its cognate tRNA and is thus required for protein biosynthesis; MRS-1 is essential for embryogenesis and required also for a normal rate of postembryonic growth. WormBase CDS description: methionyl-tRNA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

H15N14.2 192226_s_at P W All gene names: nsf-1; H15N14.2; 1I344; CE19925; NM_170902; WBGene00003818; WP:CE19925 WormBase description: vesicular-fusion protein NSF
H17B01.4 171879_x_at P W All gene names: H17B01.4; H17B01.4b.1; H17B01.4b.2; 2B780; CE27186; CE33410; WBGene00019209; WP:CE27186; WP:CE33410
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

H27M09.4 184551_at P W All gene names: dpy-14; H27M09.4; H27M09.4.1; H27M09.4.2; 1H421; CE25036; NM_059557; WBGene00001075; WP:CE25036 WormBase description: dpy-14 encodes a type III (alpha 1) collagen that is required for embryonic, larval, and vulval development, proper amphid morphology, and regulation of body shape and size; a dpy-14 promoter-GFP fusion construct is reportedly expressed in embryonic neurons.
K01A2.5 183827_at P W All gene names: K01A2.5; 2A593; CE19513; WBGene00019280; WP:CE19513
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

K04B12.3 181955_at P W All gene names: K04B12.3; 2O731; CE37027; WBGene00010551; WP:CE37027
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

K04D7.3 192551_at P W All gene names: gta-1; K04D7.3; 4K947; CE06092; NM_069461; WBGene00001794; WP:CE06092 WormBase description: The gta-1 gene encodes an ortholog of the human gene GABAT, which when mutated leads to GABA-transaminase deficiency (OMIM:137150). WormBase CDS description: 4-aminobutyrate aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K04G2.6 177699_at P W All gene names: K04G2.6; K04G2.6.1; K04G2.6.2; 1I619; CE06100; WBGene00010565; WP:CE06100
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated                                                                  

K07A12.4 191159_s_at P W All gene names: K07A12.4; 1J264; CE39388; CE39389; WBGene00010622; WP:CE39388; WP:CE39389 WormBase description: elongation factor 1-alpha
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

K08F8.4 193649_s_at P W All gene names: bas-2; pah-1; K08F8.4; 2J54; AAH/1; CE21050; NM_063462; WBGene00000240; WP:CE21050 WormBase description: The bas-2 gene encodes an ortholog of the human gene PHENYLALANINE HYDROXYLASE (PAH), which when mutated leads to phenylketonuria (OMIM:261600). WormBase CDS description: phenylalanine-4-hydroxylase (PH4H)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

K10H10.2 188978_s_at P W All gene names: K10H10.2; K10H10.2.1; K10H10.2.2; 2O780; CE16252; WBGene00010759; WP:CE16252 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: beta-synthase
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, GO categories, Reinke                            
                                              et al 2004, herm soma enriched genes, Shen et al 2005                              
                                              T1 hif-1 depend hypoxia, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated                                                                  

K11B4.2 179067_at P W All gene names: K11B4.2; 1P391; CE23868; WBGene00010767; WP:CE23868
K11C4.4 192924_s_at P W All gene names: odc-1; K11C4.4; 5H380; CE12114; NM_072351; ODC/1; WBGene00003844; WP:CE12114 WormBase description: odc-1 encodes ornithine decarboxylase, the first enzyme of polyamine biosynthesis that catalyzes the conversion of ornithine to putrescine; ODC-1 is required for development when animals are deprived of exogenous polyamines, which are required for oogenesis and completion of embryogenesis; in addition,ODC-1 may contribute to male fertility; ODC-1 activity is detectable at all developmental stages, with highest levels observed in adults and L4 larvae. WormBase CDS description: ornithine decarboxylase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K11H3.1 192756_s_at P W All gene names: K11H3.1; K11H3.1b.1; K11H3.1b.2; 3K944; CE31850; CE31851; WBGene00010778; WP:CE31850; WP:CE31851 WormBase description: K11H3.1 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases; although loss of K11H3.1 activity via large-scale RNAi screens results in no obvious defects, expression of a K11H3.1 cDNA in Saccharomyces cerevisiae hog1 mutants is able to rescue the high osmolarity-sensitive growth phenotype of these mutants, suggesting that K11H3.1 encodes a functional glycerol 3-phosphate dehydrogenase.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K12F2.2 182227_s_at P W All gene names: klp-5; unc-107; vab-8; K12F2.2; 5M705; CE23870; CE31041; NM_073662; NM_073663; WBGene00006874; WP:CE23870; WP:CE31041 WormBase description: The vab-8 gene encodes a novel protein containing an atypical kinesin-like motor domain that is required for many posteriorly-directed cell migrations, as well as axonal outgrowth and pathfinding; vab-8 encodes two protein isoforms: VAB-8S, a novel protein expressed in migrating cells, and VAB-8L, which contains a kinesin-related domain, is expressed in neurons and functions in growth cone migrations; VAB-8 interacts with UNC-51, a serine-threonine kinase also required for axon outgrowth. WormBase CDS description: kinesin-like protein
M01E11.6 188638_s_at P W All gene names: klp-15; M01E11.6; 1G146; CE12298; NM_059232; WBGene00002225; WP:CE12298 WormBase description: kinesins
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, Fig2b shared gemlines, Reinke et al                             
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt males                              
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, GO categories                             

M117.2 173137_s_at P W All gene names: ftt-1; par-5; M117.2; M117.2.1; M117.2.2; M117.2.3; 4M586; CE06200; NM_069834; WBGene00003920; WP:CE06200 WormBase description: PAR-5 is a 14-3-3 protein. WormBase CDS description: 14-3-3 protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

M176.2 173115_s_at P W All gene names: M176.2; M176.2.1; M176.2.2; 2J706; CE18087; WBGene00010941; WP:CE18087 WormBase description: M176.2 is orthologous to the human gene GLUTATHIONE SYNTHETASE (GSS; OMIM:601002), which when mutated leads to 5-oxoprolinuria, or to GSS deficiency restricted to erythrocytes and associated only with hemolytic anemia. WormBase CDS description: glutathione synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, wt herm vs wt male                                    
                                              enriched gen, Wang et al 2003  S5 genes common to                                  
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

R11A5.3 173687_s_at P W All gene names: R11A5.3; 1I438; CE12726; WBGene00011231; WP:CE12726
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R11A5.4 192262_at P W All gene names: R11A5.4; R11A5.4c.1; R11A5.4c.2; R11A5.4c.3; R11A5.4d.1; R11A5.4d.2; R11A5.4d.3; R11A5.4d.4; R11A5.4d.5; 1I447; CE12728; CE36358; CE36359; CE36360; WBGene00011232; WP:CE12728; WP:CE36358; WP:CE36359; WP:CE36360 WormBase description: phosphoenolpyruvate carboxykinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

T01H8.1 193398_s_at P W All gene names: rskn-1; T01H8.1; 1J150; CE34493; CE34494; CE34495; CE38217; NM_059918; NM_059919; WBGene00011352; WP:CE34493; WP:CE34494; WP:CE34495; WP:CE38217 WormBase description: Protein kinase C terminal domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

T04G9.4 193751_at P W All gene names: T04G9.4; CE04885; WBGene00020215; WP:CE04885; XB393 WormBase description: B. subtilis sfp protein; Anabaena sp. HETI protein
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

T05H10.7 193820_s_at P W All gene names: T05H10.7; T05H10.7b.1; T05H10.7b.2; T05H10.7b.3; 2I358; CE01644; CE03637; WBGene00011511; WP:CE01644; WP:CE03637 WormBase description: glycerophosphoryl diester phosphodiesterase domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T07C4.2 190477_at P W All gene names: tbx-8; T07C4.2; 3L437; CE36891; NM_066886; WBGene00006545; WP:CE36891 WormBase description: Brachyury
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes                                 

T07C4.6 190539_s_at P W All gene names: tbx-9; T07C4.6; T07C4.6.1; T07C4.6.2; 3L430; CE36892; NM_066885; WBGene00006546; WP:CE36892 WormBase description: Brachyury
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E                                      

T08G11.1 191403_s_at P W All gene names: T08G11.1; T08G11.1b.1; T08G11.1b.2; T08G11.1b.3; 1J482; CE13443; CE30353; WBGene00011629; WP:CE13443; WP:CE30353 WormBase description: nucleotide binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

T11A5.5 178288_at P W All gene names: sdz-31; T11A5.5; 5K359; CE06411; WBGene00011704; WP:CE06411
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T17E9.2 187543_s_at P W All gene names: T17E9.2; T17E9.2c.1; T17E9.2c.2; 3H204; CE01406; CE28669; CE31611; WBGene00020549; WP:CE01406; WP:CE28669; WP:CE31611
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

T21C12.2 193009_at P W All gene names: hpd-1; T21C12.2; 3L625; CE02347; NM_066923; WBGene00001993; WP:CE02347 WormBase description: hpd-1 encodes a 4-hydroxyphenylpyruvate dioxygenase that is required for normally short lifespan and negative regulation of the dauer larval stage, with loss of hpd-1 function prolonging lifespan and promoting dauer formation; hpd-1 is a (perhaps evolutionarily conserved) target of transcriptional activation by DAF-16; HPD-1 is orthologous to human HPD (OMIM:276710, mutated in tyrosinemia type III). WormBase CDS description: 4-hydroxyphenylpyruvate dioxygenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, list of genes in                              
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

T21F4.1 182628_s_at P W All gene names: T21F4.1; CE33700; URH; WBGene00020658; WP:CE33700; XG249 WormBase description: T21F4.1 is orthologous to the human gene ARGINASE TYPE I ERYTHROID VARIANT (ARG1; OMIM:207800), which when mutated leads to argininemia.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T22B2.4 190076_at P W All gene names: sup-12; T22B2.4; CE13934; NM_076273; WBGene00006321; WBGene00020668; WP:CE13934; XE525 WormBase description: RNA-binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T27A8.1 189381_at P W All gene names: T27A8.1; CE35629; WBGene00012073; WP:CE35629; XQ667 WormBase description: carboxypeptidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Early genes,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T27E9.4 190511_at P W All gene names: kel-3; T27E9.4; T27E9.4a.1; T27E9.4a.2; T27E9.4a.3; 3O559; CE29824; CE29825; NM_067383; NM_067384; WBGene00002185; WP:CE29824; WP:CE29825 WormBase description: ring canal protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

T28B4.3 180703_at P W All gene names: T28B4.3; CE14325; WBGene00020886; WP:CE14325; XH214
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes, Wang et al 2003  S3  genes pass                               
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

W01A11.1 189755_at P W All gene names: W01A11.1; W01A11.1.1; W01A11.1.2; 5G981; CE14390; WBGene00020909; WP:CE14390 WormBase description: epoxide hydrolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

W03A3.2 174365_s_at P W All gene names: MUS-1; polq-1; W03A3.2; 3G882; CE38982; WBGene00020964; WP:CE38982 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: DNA polymerase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

W03C9.2 178059_s_at P W All gene names: W03C9.2; 2M255; CE16532; WBGene00012220; WP:CE16532
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

W03C9.6 178136_at P W All gene names: W03C9.6; W03C9.6.1; W03C9.6.2; 2M251; CE32948; WBGene00012222; WP:CE32948
W05B2.1 171756_x_at P W All gene names: col-94; W05B2.1; 3M76; CE20144; NM_067009; WBGene00000669; WP:CE20144
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y113G7A.3 185913_at P W All gene names: sec-23; Y113G7A.3; Y113G7A.3.1; Y113G7A.3.2; 5U575; CE27230; NM_075476; WBGene00004754; WP:CE27230
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y39A1A.12 193941_at P W All gene names: Y39A1A.12; Y39A1A.12.1; Y39A1A.12.2; 3L735; CE19131; WBGene00012650; WP:CE19131 WormBase description: Y39A1A.12 encodes a homolog of origin recognition complex 1, which is also a distant paralog of CDC-6; both Y39A1A.12 and CDC-6 encode homologs of the origin complex which, in yeast, controls the start of DNA replication; whether either Y39A1A.12 or CDC-6 are required for this function in C. elegans, individually or in parallel, is unknown. WormBase CDS description: ATPases associated with various cellular activities (AAA)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

Y39A1C.2 193607_at P W All gene names: oxi-1; Y39A1C.2; 3L955; CE19147; NM_066991; WBGene00003898; WP:CE19147 WormBase description: HECT-domain (ubiquitin-transferase).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y43F4B.5 193873_at P W All gene names: Y43F4B.5; Y43F4B.5a.1; Y43F4B.5a.2; 3O391; CE16630; CE34117; WBGene00012803; WP:CE16630; WP:CE34117 WormBase description: Phosphoglucomutase and phosphomannomutase phosphoserine
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

Y46H3A.6 173451_s_at P W All gene names: gly-7; Y46H3A.6; Y46H3A.A; 5C296; CE24309; NM_071111; WBGene00001632; WP:CE24309 WormBase description: gly-7 encodes an N-acetylgalactosaminyltransferase that exhibits activity when expressed in COS7 cells. WormBase CDS description: N-acetylgalactosaminyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

Y48E1B.10 173938_s_at P W All gene names: gst-20; Y48E1B.10; 2N898; CE14870; NM_064457; WBGene00001768; WP:CE14870 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005 T1 xenobiotic                                
                                              induced GSTs, Reinke et al 2004, wt herm vs wt herm                                
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

Y48E1C.2 181772_s_at P W All gene names: Y48E1C.2; 2N717; CE16654; WBGene00013015; WP:CE16654
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y51H7C.3 186335_at P W All gene names: Y51H7C.3; 2B729; CE25385; WBGene00021781; WP:CE25385
Y53C12B.6 184927_s_at P W All gene names: Y53C12B.6; 2K12; CE14904; WBGene00013145; WP:CE14904
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order                                                                      

Y57A10A.23 187073_at P W All gene names: Y57A10A.23; Y57A10A.23.1; Y57A10A.23.2; 2M531; CE22626; WBGene00013263; WP:CE22626
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

Y57A10A.26 187069_at P W All gene names: Y57A10A.26; Y57A10A.26.1; Y57A10A.26.2; 2M555; CE22631; WBGene00013266; WP:CE22631
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y57E12AM.1 176585_at P W All gene names: Y57E12AM.1; 5H543; CE26193; WBGene00021960; WP:CE26193
Y66H1B.4 184587_s_at P W All gene names: spl-1; Y66H1B.4; 4B134; CE20348; NM_067512; WBGene00004981; WP:CE20348; spl
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

Y71F9AM.6 176321_s_at P W All gene names: Y71F9AM.6; Y71F9AM.6.1; Y71F9AM.6.2; Y71F9AM.6.3; 1D497; CE26244; WBGene00022122; WP:CE26244
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y71F9B.5 173399_s_at P W All gene names: lin-17; Y71F9B.5; Y71F9B.5b.1; Y71F9B.5b.2; Y71F9B_287.C; 1D285; CE25569; CE28810; NM_058627; WBGene00003006; WP:CE25569; WP:CE28810 WormBase description: lin-17 encodes one of four C. elegans Frizzled homologs, integral membrane proteins that contain an external cysteine rich domain (CRD) and seven transmembrane domains and that function in a wide variety of species as receptors for Wnt glycoprotein signaling molecules; LIN-17 activity is required for specifying the polarity of a number of asymmetric cell divisions that, in C. elegans, are essential for development of such structures as the vulva, somatic gonad, and tail; LIN-17 is also required for the proper polarity of neuronal migrations along the anterior-posterior axis; genetic interactions indicate that LIN-17 likely functions as a receptor for several different Wnt molecules, including LIN-44 and EGL-20, and that in specifying cell fates, the LIN-17-mediated signaling pathway often functions redundantly with other signaling pathways, including the RTK/Ras pathway; a LIN-17 translational reporter fusion shows membrane-associated expression in all of the Pn.pxx vulval precursor cells, in the descendants of V6 and T in males, in the P11.p and B cells, as well as their daughters, and granddaughters, and weakly in P10.p and its daughters; the reporter fusion does not reveal expression in P7.p, Z1, Z4, and T
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y73F8A.25 185724_s_at P W All gene names: Y73F8A.25; Y73F8A.CC; 4Q220; CE32999; CE33000; WBGene00013530; WP:CE32999; WP:CE33000
Y75B8A.2 191468_s_at P W All gene names: nob-1; Y75B8A.2; Y75B8A.C; 3N168; CE29009; CE29010; WBGene00003779; WP:CE29009; WP:CE29010 WormBase description: The nob-1 gene encodes one of three C. elegans posterior group homeodomain transcription factors orthologous to Drosophila Abd-B and the vertebrate Hox9-13 proteins; NOB-1, along with an additional posterior Hox ortholog, PHP-3, is required during embryogenesis for proper fate specification and morphogenesis of cells in the posterior region.
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes                                 

Y77E11A.11 173237_s_at P W All gene names: clp-7; Y77E11A.11; Y77E11A.11.1; Y77E11A.11.2; 4C200; CE25612; NM_067681; WBGene00000547; WP:CE25612 WormBase description: clp-7 encodes a member of the calpain family of cysteine proteases.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

ZC308.4 181785_at P W All gene names: ZC308.4; 1G945; CE15165; WBGene00022586; WP:CE15165
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

ZK1290.8 184676_s_at P W All gene names: wrt-10; ZK1290.8; 2H824; CE02087; NM_063179; WBGene00006956; WP:CE02087
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

ZK270.1 188060_s_at P W All gene names: ptr-23; ZK270.1; 1P503; CE15305; NM_061202; WBGene00004237; WP:CE15305
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order                                         

ZK593.1 189095_at P W All gene names: ZK593.1; 4L677; CE24731; WBGene00014001; WP:CE24731 WormBase description: pyruvate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, GO categories, Reinke et                              
                                              al 2004, herm soma enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

ZK652.3 176124_at P W All gene names: ZK652.3; 3I949; CE00449; WBGene00022784; WP:CE00449 WormBase description: ZK652.3 encodes a conserved eukaryotic protein with a ubiquitin-like fold.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK829.4 190626_s_at P W All gene names: ZK829.4; ZK829.4.1; ZK829.4.2; ZK829.4.3; ZK829.4.4; 4M719; CE06652; WBGene00014095; WP:CE06652 WormBase description: ZK829.4 is orthologous to the human gene GLYCINE DECARBOXYLASE PRECURSOR (GLUD1; OMIM:238300), which when mutated leads to disease. WormBase CDS description: glutamate dehydrogenase
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK945.4 186600_at P W All gene names: ZK945.4; 2K394; CE35922; WBGene00014166; WP:CE35922
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol