Baugh et al 2003, subclass E_143min, 227 genes

Gene list file name:Baugh2003_classEpi_143min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass E_143min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_C35D10.1 Aff_C35D10.1 P W
AFF_C50F2.2 Aff_C50F2.2 P W
AFF_R05F9.12 Aff_R05F9.12 P W
AFF_Y37D8A.21 Aff_Y37D8A.21 P W
B0213.3 Aff_B0213.3 P W All gene names: nlp-28; B0213.3; 5E463; CE16774; NM_071709; WBGene00003766; WP:CE16774
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

B0228.6 Aff_B0228.6 P W All gene names: B0228.6; 2I44; CE31283; WBGene00015063; WP:CE31283
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0285.4 Aff_B0285.4 P W All gene names: B0285.4; 3F433; CE00643; WBGene00007137; WP:CE00643
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

B0285.8 Aff_B0285.8 P W All gene names: ckb-1; B0285.8; 3F455; CE33590; NM_065478; WBGene00000511; WP:CE33590 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0303.15 Aff_B0303.15 P W All gene names: B0303.15; 3J807; CE00004; WBGene00015133; WP:CE00004 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Ribosomal protein L11
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

B0361.2 Aff_F56C9.4 P W All gene names: B0361.2; 3I397; CE33549; CE38480; WBGene00015156; WP:CE33549; WP:CE38480
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0391.9 Aff_B0391.9 P W All gene names: B0391.9; 5Q70; CE17337; WBGene00007164; WP:CE17337
B0495.2 Aff_B0495.2 P W All gene names: B0495.2; 2H991; CE01761; WBGene00015203; WP:CE01761 WormBase description: CDC2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

B0495.5 Aff_B0495.5 P W All gene names: B0495.5; B0495.5.1; B0495.5.2; 2H986; CE29948; WBGene00015204; WP:CE29948
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

C01B12.2 Aff_C01B12.2 P W All gene names: C01B12.2; 2A311; CE39124; WBGene00015285; WP:CE39124
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C01B7.1 Aff_C01B7.1 P W All gene names: C01B7.1; C01B7.1a.1; C01B7.1a.2; 5J271; CE29553; CE30719; WBGene00015274; WP:CE29553; WP:CE30719 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

C01C10.3 Aff_C01C10.3 P W All gene names: acl-12; C01C10.3; CE02449; NM_076859; WBGene00015295; WP:CE02449; XI58
C02B8.6 Aff_C02B8.6 P W All gene names: C02B8.6; CE29656; WBGene00015324; WP:CE29656; XI752 WormBase description: DNA repair protein RAD16 (yeast, weak)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C02D5.2 Aff_C02D5.2 P W All gene names: C02D5.2; 3J647; CE00034; CE39554; WBGene00015336; WP:CE00034; WP:CE39554
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C02F12.1 Aff_C02F12.1 P W All gene names: tsp-17; C02F12.1; CE35213; NM_076233; WBGene00006643; WP:CE35213; XE303 WormBase description: transpanin
C02F12.8 Aff_C02F12.8 P W All gene names: C02F12.8; CE03902; WBGene00015357; WP:CE03902; XE310
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C04G2.6 Aff_C04G2.6 P W All gene names: dis-3; tag-128; C04G2.6; 4K869; CE05214; NM_069434; WBGene00001001; WP:CE05214 WormBase description: S.pombe mitotic control protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C05D11.13 Aff_C05D11.13 P W All gene names: C05D11.13; 3H532; CE03930; WBGene00015488; WP:CE03930
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D11.5 Aff_C05D11.5 P W All gene names: C05D11.5; 3H496; CE01135; WBGene00015483; WP:CE01135
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, mixed sperm                               
                                              soma, Reinke et al 2004, fem3 enriched genes,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C05D9.3 Aff_C05D9.3 P W All gene names: C05D9.3; CE35381; WBGene00015472; WP:CE35381; XB733
C05E11.3 Aff_C05E11.3 P W All gene names: C05E11.3; CE33029; WBGene00015494; WP:CE33029; XF199
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C06A5.11 Aff_C06A5.3 P W All gene names: sir-2.4; C06A5.11; 1G567; CE27656; NM_059332; WBGene00004803; WP:CE27656
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C06E1.10 Aff_C06E1.10 P W All gene names: rha-2; C06E1.10; 3J700; CE29563; WBGene00015525; WP:CE29563 WormBase description: The C06E1.10 gene encodes a DEAH helicase orthologous to the Drosophila KURZ, the human KIAA1517, and the S. cerevisiae ECM16 proteins. WormBase CDS description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C07H6.1 Aff_C07H6.1 P W All gene names: lig-4; C07H6.1; 3I613; CE34522; NM_066252; WBGene00002986; WP:CE34522
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

C08B11.2 Aff_C08B11.2 P W All gene names: hda-2; C08B11.2; 2I312; CE01472; NM_063277; WBGene00001835; WP:CE01472 WormBase description: transcriptional regulatory protein (RPD3)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

C08B11.6 Aff_C08B11.6 P W All gene names: C08B11.6; C08B11.6.1; C08B11.6.2; CE30856; WBGene00007434; WP:CE30856 WormBase description: actin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C08B11.8 Aff_C08B11.8 P W All gene names: C08B11.8; 2I333; CE01478; WBGene00007435; WP:CE01478
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S4 Early genes,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

C08F8.8 Aff_C08F8.8 P W All gene names: nhr-67; C08F8.8; 4L939; CE18491; NM_069693; WBGene00003657; WP:CE18491 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C08H9.3 Aff_C08H9.3 P W All gene names: C08H9.3; 2K174; CE36914; CE37608; WBGene00007464; WP:CE36914; WP:CE37608 WormBase description: glucosyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

C10A4.8 Aff_C10A4.8 P W All gene names: C10A4.8; CE35391; WBGene00015669; WP:CE35391; XI30 WormBase description: Zinc finger protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C11G6.4 Aff_C11G6.4 P W All gene names: nhr-28; C11G6.4; C11G6.4a.1; C11G6.4a.2; C11G6.4b.1; C11G6.4b.2; C11G6.4b.3; CE27061; CE37954; WBGene00003624; WP:CE27061; WP:CE37954; XQ973 WormBase description: nuclear hormone receptor, nhr-28
C13B9.3 Aff_C13B9.3 P W All gene names: phi-30; C13B9.3; 3H712; CE01778; WBGene00015734; WP:CE01778 WormBase description: C13B9.3 encodes a delta subunit of the coatomer (COPI) complex; in mass RNAi assays, C13B9.3 is required for fertility and general health.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C14B9.6 Aff_C14B9.5 P W All gene names: gei-8; pqn-12; C14B9.6; 3J202; CE29577; CE30603; CE36784; NM_066371; NM_066372; NM_171207; WBGene00001565; WP:CE29577; WP:CE30603; WP:CE36784 WormBase description: gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains; interacts with GEX-3 in yeast two-hybrid assays.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C15F1.4 Aff_C15F1.E P W All gene names: ppp-1; C15F1.4; C15F1.E; 2H256; CE23548; NM_063027; WBGene00004090; WP:CE23548 WormBase description: translation initiation factor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

C15H11.4 Aff_C15H11.4 P W All gene names: dhs-22; C15H11.4; 5O900; CE08181; NM_074169; WBGene00000985; WP:CE08181 WormBase description: dhs-22 encodes a short-chain dehydrogenase predicted to be mitochondrial. WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C16A3.2 Aff_C16A3.2 P W All gene names: C16A3.2; 3H479; CE08188; WBGene00015807; WP:CE08188 WormBase description: protein-tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, IVb male                                
                                              soma enriched genes, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

C17C3.1 Aff_C17C3.1 P W All gene names: C17C3.1; 2F863; CE27070; CE27071; CE27072; CE27073; CE39676; WBGene00015887; WP:CE27070; WP:CE27071; WP:CE27072; WP:CE27073; WP:CE39676
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C18E9.6 Aff_C18E9.6 P W All gene names: C18E9.6; 2J262; CE05298; WBGene00007686; WP:CE05298
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S5 genes                              
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

C25F6.2 Aff_C25F6.2 P W All gene names: dlg-1; C25F6.2; C25F6.2a.1; C25F6.2a.2; C25F6.2b.1; C25F6.2b.2; CE34261; CE36524; NM_076527; WBGene00001006; WP:CE34261; WP:CE36524; XG103 WormBase description: dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph                                                                            

C31C9.1 Aff_C31C9.1 P W All gene names: tag-10; C31C9.1; 2N925; CE32597; CE32598; WBGene00006404; WP:CE32597; WP:CE32598 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, ViswanathanM et al 2005  S2 daf-16                                    
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C32C4.2 Aff_C32C4.2 P W All gene names: aqp-6; C32C4.2; 5L131; CE05345; NM_073326; WBGene00000174; WP:CE05345 WormBase description: MIP protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Wang et al 2003  S3  genes pass one-way ANOVA,                            
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C33D9.5 Aff_C33D9.5 P W All gene names: C33D9.5; 4J544; CE37808; WBGene00007899; WP:CE37808 WormBase description: Yeast RAD50 like protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C33D9.8 Aff_C33D9.8 P W All gene names: C33D9.8; 4J548; CE03048; WBGene00007901; WP:CE03048
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C33H5.7 Aff_C33H5.7 P W All gene names: C33H5.7; 4I539; CE04150; WBGene00016374; WP:CE04150
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, list of genes in cluster F, Reinke et al 2004, wt                            
                                              vs glp-4 enriched genes, Reinke et al 2004, list of                                
                                              genes in cluster order, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

C34B2.10 Aff_C34B2.10 P W All gene names: phi-56; C34B2.10; C34B2.10.1; C34B2.10.2; 1L258; CE16898; WBGene00016395; WP:CE16898
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C34B7.2 Aff_C34B7.2 P W All gene names: C34B7.2; 1I917; CE32316; WBGene00007912; WP:CE32316 WormBase description: Yeast hypothetical protein YNOD like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              Romagnolo et al 2002  Fig3b others, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

C34E10.8 Aff_C34E10.8 P W All gene names: C34E10.8; 3G340; CE32158; WBGene00016409; WP:CE32158
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

C36A4.8 Aff_C36A4.8 P W All gene names: brc-1; C36A4.8; 3E944; CE31438; NM_065379; WBGene00000264; WP:CE31438 WormBase description: The brc-1 gene encodes a homolog of human BRCA1, which when mutated leads to early onset breast and ovarian cancer (OMIM:113705). WormBase CDS description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C36B1.11 Aff_C36B1.11 P W All gene names: C36B1.11; 1J332; CE05378; WBGene00007978; WP:CE05378
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, fem1 enriched                               
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C41D11.1 Aff_C41D11.1 P W All gene names: C41D11.1; 1F33; CE08658; WBGene00016561; WP:CE08658
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C43H6.1 Aff_C43H6.1 P W All gene names: C43H6.1; CE37619; WBGene00016614; WP:CE37619; XD31
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C44B7.1 Aff_C44B7.1 P W All gene names: C44B7.1; C44B7.1.1; C44B7.1.2; C44B7.1.3; C44B7.1.4; 2H191; CE25810; P27; WBGene00016623; WP:CE25810
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes                                                   

C44C1.2 Aff_C44C1.2 P W All gene names: C44C1.2; CE30126; WBGene00016642; WP:CE30126; XB577
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

C44H4.2 Aff_C44H4.2 P W All gene names: sym-5; C44H4.2; CE08723; NM_078024; WBGene00006370; WP:CE08723; XP197 WormBase description: sym-5 encodes a predicted transmembrane protein that contains 13 contiguous leucine-rich repeats (LRRs) and that is similar to SYM-1, a secreted protein involved in muscle attachment; sym-5 activity appears to be required for embryogenesis and functionally overlaps with that of sym-1 and mec-8 in affecting muscle attachment; in addition, loss of sym-5 activity via RNA-mediated interference (RNAi) in a hypersensitized strain indicates that SYM-5 may also be required for locomotion, body morphology, and normal rates of postembryonic growth. WormBase CDS description: Drosophila chaoptin protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C44H4.3 Aff_C44H4.3 P W All gene names: sym-1; C44H4.3; CE08724; NM_078025; WBGene00006366; WP:CE08724; XP201 WormBase description: sym-1 encodes a protein containing 15 contiguous leucine-rich repeats (LRRs) that functionally overlaps with sym-5 and interacts with mec-8 with respect to embryonic viability and attachment of body muscle to the extracellular cuticle; expression begins at the time of embryonic elongation and SYM-1 is secreted from the apical hypodermal surface of the embryo WormBase CDS description: Drosophila chaoptin protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C47B2.2 Aff_C47B2.2 P W All gene names: C47B2.2; C47B2.2b.1; C47B2.2b.2; CE17562; CE23599; WBGene00008131; WP:CE17562; WP:CE23599
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C50F4.4 Aff_C50F4.4 P W All gene names: C50F4.4; 5K15b; CE33985; WBGene00008232; WP:CE33985
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C53B4.6 Aff_C53B4.6 P W All gene names: C53B4.6; 4J751; CE03092; WBGene00008275; WP:CE03092 WormBase description: Yeast YEA4 like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, wt herm vs wt male                                    
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C54F6.8 Aff_C54F6.8 P W All gene names: nhr-171; C54F6.8; 5H991; CE17603; WBGene00016926; WP:CE17603 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C54G10.4 Aff_C54G10.4 P W All gene names: C54G10.4; 5P134; CE05519; CE32337; WBGene00008320; WP:CE05519; WP:CE32337 WormBase description: mitochrondrial carrier protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C55B7.3 Aff_C55B7.3 P W All gene names: C55B7.3; 1H77; CE09014; WBGene00016942; WP:CE09014 WormBase description: protein-tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

C55B7.4 Aff_C55B7.4 P W All gene names: acdh-1; dod-12; C55B7.4; C55B7.4b.1; C55B7.4b.2; C55B7.4b.3; C55B7.4b.4; 1H75; CE09015; CE32840; NM_059470; NM_181994; WBGene00016943; WP:CE09015; WP:CE32840 WormBase description: acyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Golden et al 2004, N2 differentially                                  
                                              expressed gen, Golden et al 2004, N2 vs daf-2 different                            
                                              genes at , McCarroll et al 2004  SFig1-4 conserved w/                              
                                              Drosoph, Reinke et al 2004, herm soma enriched genes,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F01G4.5 Aff_F01G4.5 P W All gene names: F01G4.5; 4L910; CE03130; WBGene00008504; WP:CE03130
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F02E9.4 Aff_F02E9.4 P W All gene names: pqn-28; F02E9.4; 1I999; CE33046; NM_059883; WBGene00004117; WP:CE33046 WormBase description: pqn-28 encodes an ortholog of the SIN3 family of histone deacetylase subunits, which also has a glutamine/asparagine-rich domain, possibly involved in epigenetic regulation; pqn-28 has no obvious phenotype in mass RNAi screens; on the basis of its homology, PQN-28, when activated by promoter-specific transcription factors, is expected to work in conjunction with other histone deacetylase components to induce chromatin silencing; PQN-28 may also silence genes by colocating to them with the O-GlcNAc transferase homolog OGT-1.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F09D1.1 Aff_F09D1.1 P W All gene names: F09D1.1; 2C865; CE20660; WBGene00017280; WP:CE20660 WormBase description: ubiquitin protease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, GO                              
                                              categories                                                                         

F09E5.13 Aff_F09E5.13 P W All gene names: agt-2; cAGT-2; F09E5.13; 2F660; CE02608; NM_062607; WBGene00000094; WP:CE02608 WormBase description: agt-2 encodes a paralog of the DNA repair enzyme O6-Alkylguanine DNA-alkyltransferase (AGT); AGT-2 has AGT biochemical activity and is expressed at all developmental stages.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

F10C2.6 Aff_F10C2.6 P W All gene names: drs-2; F10C2.6; 5M531; CE31906; NM_073618; WBGene00001095; WP:CE31906 WormBase description: drs-2 encodes a putative aspartyl-tRNA synthetase. WormBase CDS description: aspartyl-tRNA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Romagnolo et al 2002                                 
                                              Fig3b Protein Synthesis, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F10D11.2 Aff_F10D11.2 P W All gene names: F10D11.2; 1J12; CE32366; WBGene00008648; WP:CE32366
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F10E9.6 Aff_F10E9.6 P W All gene names: mig-10; F10E9.6; F10E9.6a.1; F10E9.6a.2; 3J395; CE00150; CE29261; CE36129; NM_066420; NM_066421; WBGene00003243; WP:CE00150; WP:CE29261; WP:CE36129 WormBase description: mig-10 encodes a protein containing a pleckstrin homology domain and a proline-rich region, and is similar to the SH2-domain containing adapter proteins Grb7 and Grb10 which are involved in receptor tyrosine kinase-mediated signal transduction; MIG-10 is likely required for signal transduction during cell migration, as it is required non-cell autonomously for excretory canal development and anterior-posterior migrations of the embryonic neurons ALM, CAN, and HSN; mig-10 mutations appear to interact genetically with mutations in all three C. elegans rac genes, ced-10, mig-2, and rac-2, suggesting partial redundancy during neuronal migration and excretory canal outgrowth; MIG-10 is expressed in many embryonic cells and in four cells in the adult head.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F11C1.6 Aff_F11C1.6 P W All gene names: nhr-25; F11C1.6; F11C1.6a.1; F11C1.6a.2; F11C1.6b.1; F11C1.6b.2; F11C1.6b.3; CE03191; CE35856; NM_077761; WBGene00003623; WP:CE03191; WP:CE35856; XN631 WormBase description: nhr-25 encodes a nuclear hormone receptor orthologous to Drosophila Ftz-F1; NHR-25 is required for embryogenesis, molting, vulval and gonadal development, and hypodermal expression of acn-1; nhr-25 is expressed in gonads and loaded into embryos as a maternal transcript; nhr-25 is zygotically expressed in progeny of the E cell, and then in hypodermis and gut; the role of NHR-25 in molting may be evolutionarily conserved between nematodes and arthopods.
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F11C3.2 Aff_F11C3.2 P W All gene names: cof-1; ofm-1; unc-122; F11C3.2; 1P467; CE20668; NM_061197; WBGene00006845; WP:CE20668 WormBase description: unc-122 encodes a predicted type II transmembrane protein with extracellular collagen-like domains and a highly conserved olfactomedin (OLF) domain that is found in a family of secreted proteins involved in formation and function of nervous systems; UNC-122 is required for proper locomotion and for normal morphology of the DVB motorneuron, and may regulate neuromuscular function by acting in an aminergic/peptidergic pathway parallel to cholinergic neurotransmission; although mosaic analysis indicates that UNC-122 activity is required in muscle cells, the precise expression and localization patterns of UNC-122 are not yet known.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F11F1.7 Aff_F11F1.7 P W All gene names: F11F1.7; 3O495; CE15807; WBGene00008719; WP:CE15807 WormBase description: Transthyretin-like family
F14D12.2 Aff_F14D12.2 P W All gene names: unc-97; F14D12.2; CE04392; NM_076542; WBGene00006826; WP:CE04392; XG213 WormBase description: The unc-97 gene encodes a LIM domain-containing protein of the PINCH family that is highly similar to human LIMS1 (OMIM:602567) and LIMS2; UNC-97 functions as an adaptor protein important for assembly of muscle adherens junctions and the mechanosensory functions of the touch neurons; UNC-97 interacts with PAT-4/integrin-linked kinase and with UNC-98; UNC-97 colocalizes with PAT-3/beta integrin at dense bodies, focal adhesion-like muscle attachment structures. WormBase CDS description: LIM domain containing protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

F18A1.2 Aff_F18A1.2 P W All gene names: lin-26; F18A1.2; F18A1.2.1; F18A1.2.2; F18A1.2.3; 2H973; CE27972; WBGene00003012; WP:CE27972 WormBase description: lin-26 encodes a putative C2H2 zinc finger-containing protein required for proper differentiation of ectodermal and mesodermal epithelial cells; LIN-26 is expressed in many different cell types including the rectal rep cells, the somatic gonad, glial cells, and hypodermal cells; ectopic LIN-26 expression during embryogenesis induces epithelial-like cell fates suggesting that LIN-26 is sufficient for epithelial differentiation. WormBase CDS description: transcription factor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F18E9.5 Aff_F18E9.5 P W All gene names: tag-279; F18E9.5; CE30957; CE30958; WBGene00017571; WP:CE30957; WP:CE30958; XJ193
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

F18F11.1 Aff_F18F11.1 P W All gene names: F18F11.1; 4B88; CE17684; WBGene00017574; WP:CE17684
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F21A10.2 Aff_F21A10.2 P W All gene names: F21A10.2; F21A10.2a.1; F21A10.2a.2; F21A10.2a.3; F21A10.2a.4; CE23678; CE31488; CE31489; WBGene00008999; WP:CE23678; WP:CE31488; WP:CE31489; XK800
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

F21A3.2 Aff_F21A3.2 P W All gene names: F21A3.2; 5Q12; CE31909; WBGene00008992; WP:CE31909 WormBase description: acid phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F21A9.2 Aff_F21A9.2 P W All gene names: F21A9.2; 1E272; CE09522; WBGene00017651; WP:CE09522 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes                                                                

F21D5.6 Aff_F21D5.6 P W All gene names: F21D5.6; 4J506; CE03249; WBGene00009011; WP:CE03249
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F21H11.3 Aff_F21H11.3 P W All gene names: sdf-13; tbx-2; F21H11.3; F21H11.3.1; F21H11.3.2; 3G222; CE01245; NM_065687; WBGene00006543; WP:CE01245 WormBase description: tbx-2 encodes one of 21 C. elegans T-box transcription factors; during development, tbx-2 activity is required for normal adaptation, but not chemotaxis, to attractive odorants sensed by the AWC amphid neurons; tbx-2 is also required redundantly with unc-3 and unc-31 for negative regulation of dauer formation, and large-scale RNAi screens reveal an essential role for tbx-2 in early larval development, normal rates of postembryonic growth, and locomotory behavior; antibodies to TBX-2 detect expression in the cytoplasm of amphid and pharyngeal neurons in larvae and adults, suggesting that TBX-2 function may be controlled, in part, by regulation of its subcellular localization; in addition, in situ hybridization studies indicate that tbx-2 mRNA is expressed during mid-embryogenesis; tbx-2 expression in the AWC amphid neurons is sufficient to rescue the olfactory adaptation defects seen in tbx-2 mutant animals.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F22B5.9 Aff_F22B5.9 P W All gene names: frs-2; F22B5.9; 2I755; CE20708; WBGene00001498; WP:CE20708 WormBase description: phenylalanyl-tRNA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

F22D6.5 Aff_F22D6.5 P W All gene names: prp-4; F22D6.5; 1H668; CE05686; NM_059607; WBGene00004186; WP:CE05686 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F25B5.5 Aff_F25B5.5 P W All gene names: F25B5.5; 3H34; CE01922; WBGene00017776; WP:CE01922
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F25H2.13 Aff_F25H2.13 P W All gene names: F25H2.13; 1L153; CE15894; WBGene00009124; WP:CE15894 WormBase description: DEAH-type helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, intrinsic, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol                                                                        

F25H8.1 Aff_F25H8.1 P W All gene names: F25H8.1; 4K696; CE05727; WBGene00009131; WP:CE05727 WormBase description: Yeast protein 00926 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 daf-16 Resveratrol, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

F28C6.3 Aff_F28C6.3 P W All gene names: cpf-1; F28C6.3; 2I892; CE03274; NM_063421; WBGene00000773; WP:CE03274 WormBase description: cleavage stimulation factor like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, wt herm vs wt                              
                                              male enriched gen, Reinke et al 2004, list of genes in                             
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F29C12.4 Aff_F29C12.4 P W All gene names: F29C12.4; 2N411; CE19822; WBGene00009246; WP:CE19822 WormBase description: Elongation factor Tu family (contains ATP/GTP binding P-loop), Elongation factor G C-terminus
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F29D10.4 Aff_F29D10.4 P W All gene names: hum-1; F29D10.4; 1J422; CE05763; NM_059992; WBGene00002035; WP:CE05763 WormBase description: myosin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McElwee et al 2003  T1 targets of daf-16,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, list of                             
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F30A10.1 Aff_F30A10.1 P W All gene names: F30A10.1; 1K48; CE09802; WBGene00009260; WP:CE09802 WormBase description: calcineurin B subunit like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F32D1.1 Aff_F32D1.1 P W All gene names: figl-1; F32D1.1; 5E820; CE09865; WBGene00017981; WP:CE09865 WormBase description: F32D1.1 encodes an homolog of human SPASTIN (OMIM:604277, mutated in spastic paraplegia), FIDGETIN (OMIM:605295, mutated in fidget mice), and FIDGETIN-LIKE-1, and of Drosophila SPASTIN; recombinant F32D1.1 protein has N-ethylmaleimide-sensitive ATPase activity in vitro, which is strongly dependent on the C368 residue immediately C-terminal to its Walker A motif; F32D1.1 is required for persistence of the germline in RNAi assays. WormBase CDS description: ATPase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F32H2.6 Aff_F32H2.6 P W All gene names: phi-46; F32H2.6; 1J574; CE09881; WBGene00009343; WP:CE09881 WormBase description: fatty acid synthase (N-terminus)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F33A8.6 Aff_F33A8.6 P W All gene names: F33A8.6; 2L343; CE18659; WBGene00009354; WP:CE18659 WormBase description: Protein phosphatase 2C
F35C8.4 Aff_F35C8.4 P W All gene names: syn-1; F35C8.4; CE30968; NM_076508; WBGene00006371; WP:CE30968; XF971 WormBase description: syn-1 encodes a syntaxin (t-SNARE) homologous to mammalian and Drosophila syntaxin 1; by homology, SYN-1 is a predicted plasma membrane protein that mediates fusion events between exocytic vesicles and the plasma membrane; however, as loss of syn-1 activity via RNAi does not result in any obvious abnormalities, the precise role of syn-1 in C. elegans development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F36D1.1 Aff_F36D1.1 P W All gene names: F36D1.1; 1L870; CE19832; WBGene00009461; WP:CE19832
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F36H1.6 Aff_F36H1.6 P W All gene names: alh-3; F36H1.6; 4L789; CE05817; NM_069653; WBGene00000109; WP:CE05817 WormBase description: alh-3 encodes an aldehyde dehydrogenase predicted to be mitochondrial. WormBase CDS description: formyltetrahydrofolate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F37B12.2 Aff_F37B12.2 P W All gene names: gcs-1; F37B12.2; F37B12.2.1; F37B12.2.2; 2J326; CE32886; NM_063526; WBGene00001527; WP:CE32886 WormBase description: gcs-1 encodes the C. elegans ortholog of gamma-glutamine cysteine synthetase heavy chain (GCS(h)); GCS-1 is predicted to function, in a conserved oxidative stress response pathway, as a phase II detoxification enzyme that catalyzes the rate-limiting first step in glutathione biosynthesis; a GCS-1::GFP reporter fusion is expressed in larvae and adults in the pharynx, ASI chemosensory neurons, and anterior and posterior intestine and upon exposure to oxidative stress, such as heat or herbicide, the intestinal expression increases dramatically; constitutive and stress-inducible GCS-1::GFP expression in the ASI neurons and intestine, respectively, is under the control of the SKN-1 CNC transcription factor; loss of gcs-1 activity via RNAi results in a low percentage of larval lethality and intestinal abnormalities suggesting that gcs-1 plays a role in postembryonic development. WormBase CDS description: glutamate-cysteine ligase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

F38E1.9 Aff_F38E1.9 P W All gene names: F38E1.9; 5I838; CE04527; WBGene00018181; WP:CE04527
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Unkown, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

F39G3.5 Aff_F39G3.5 P W All gene names: F39G3.5; 5F201; CE10120; CE36933; WBGene00018210; WP:CE10120; WP:CE36933
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

F40F8.5 Aff_F40F8.5 P W All gene names: F40F8.5; 2L424; CE32888; WBGene00009578; WP:CE32888
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, intrinsic,                                  
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

F41H10.6 Aff_Y4C6B.A P W All gene names: F41H10.6; 4G122; CE20772; CE25887; WBGene00018319; WP:CE20772; WP:CE25887
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F42E11.2 Aff_F42E11.2 P W All gene names: F42E11.2; CE03309; CE23715; CE31512; WBGene00009632; WP:CE03309; WP:CE23715; WP:CE31512; XL991
F43D9.2 Aff_F43D9.2 P W All gene names: rab-33; F43D9.2; 3L590; CE00992; NM_066913; WBGene00004283; WP:CE00992
F43G6.11 Aff_F43G6.4 P W All gene names: F43G6.11; 2M91; CE31698; CE31699; NM_171044; NM_171045; WBGene00009663; WP:CE31698; WP:CE31699
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F43G9.4 Aff_F43G9.4 P W All gene names: F43G9.4; 1J184; CE10360; WBGene00009667; WP:CE10360
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F44A6.1 Aff_F44A6.1 P W All gene names: nucb-1; F44A6.1; CE03322; CE31514; NM_171763; NM_171970; WBGene00009674; WP:CE03322; WP:CE31514; XK817 WormBase description: F44A6.1 encodes two isoforms of a nucleobindin homolog that each contain a calcium-binding EF-hand domain and a glutamine/asparagine-rich domain; F44A6.1 is expressed in muscle (pharyngeal, body wall, and vulval), with weak expression in head and tail neurons and in (mainly posterior) intestinal cells; F44A6.1 has no obvious function in vivo, since it has no obvious phenotype when deleted or inactivated by RNAi (whether in a normal genetic background, or in goa-1 and egl-30 mutant backgrounds). WormBase CDS description: nucleobindin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

F44B9.5 Aff_F44B9.5 P W All gene names: F44B9.5; F44B9.5.1; F44B9.5.2; 3J104; CE24973; WBGene00018408; WP:CE24973
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F45E12.2 Aff_F45E12.2 P W All gene names: brf-1; F45E12.2; 2H597; BRF; CE02738; NM_063125; WBGene00000271; WP:CE02738 WormBase description: brf-1 encodes an ortholog of mammalian B-RELATED FACTOR (also known as BRF, TDS4, PCF4, or hTFIIIB90); BRF is thought to act as a molecular bridge between TATA-binding protein (TBP) associated factors that functions in TFIIIB (RNA polymerase III associated transcription factors). WormBase CDS description: transcription initiation factor IIB
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004,                                
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F45F2.9 Aff_F45F2.9 P W All gene names: F45F2.9; F45F2.9.1; F45F2.9.2; 5I990; CE33095; WBGene00018481; WP:CE33095
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen                                                                  

F45G2.4 Aff_F45G2.4 P W All gene names: F45G2.4; 3O517; CE16047; WBGene00009732; WP:CE16047 WormBase description: F45G2.4 encodes an epsilon subunit of the coatomer (COPI) complex; in mass RNAi assays, F45G2.4 is required for larval viability, proper locomotion, and properly rapid growth.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F45G2.9 Aff_F45G2.9 P W All gene names: F45G2.9; 3O526; CE16052; WBGene00009735; WP:CE16052
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F46B6.6 Aff_F46B6.6 P W All gene names: F46B6.6; 5K264; CE26974; WBGene00009771; WP:CE26974 WormBase description: initiation factor IF-2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F49E12.6 Aff_F49E12.6 P W All gene names: F49E12.6; 2I705; CE37018; WBGene00009899; WP:CE37018 WormBase description: The F49E12.6 gene encodes a protein with two E2F domains that may be involved in apoptosis. WormBase CDS description: RBB3 like protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig3 Rb complex                                 
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F49E8.1 Aff_F49E8.1 P W All gene names: F49E8.1; 4I323; CE33650; WBGene00018635; WP:CE33650
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

F52G3.1 Aff_F52G3.1 P W All gene names: F52G3.1; CE28439; WBGene00018710; WP:CE28439; XR585
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F53F10.4 Aff_F53F10.4 P W All gene names: rab-2; unc-108; F53F10.4; F53F10.4.1; F53F10.4.2; 1E393; CE10986; NM_058832; WBGene00006833; WP:CE10986 WormBase description: unc-108 encodes a small GTPase homologous to the Rab GTPases that function in endocytosis, membrane fusion, and vesicular trafficking events; the precise biological role and expression pattern of unc-108 are not yet known. WormBase CDS description: RAS-related protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F54E7.7 Aff_F54E7.7 P W All gene names: rcn-1; F54E7.7; 3G772; CE31002; DSCR1L; NM_065822; SC; WBGene00004321; WP:CE31002 WormBase description: rcn-1 encodes a calcipressin, which binds and inhibits calcineurin; RCN-1's orthologs include yeast Rcn1p and human DSCR1 (OMIM:602917; overexpressed in Down syndrome and Alzheimer disease); rcn-1 is expressed in hypodermal seam cells, various neurons, vulval epithelial and muscle cells, marginal pharyngeal cells, and in the male tail; rcn-1 transcription is regulated by TAX-6, and RCN-1 binds TAX-6 protein if free Ca[2+] is present; RCN-1 overexpression, like calcineurin deficiency, causes defects in body size, cuticle thickness, fertility, growth rate, and serotonin-resistance in egg-laying.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F54G8.3 Aff_F54G8.3 P W All gene names: ina-1; F54G8.3; 3K258; CE00205; NM_066631; WBGene00002081; WP:CE00205 WormBase description: Integrin alpha chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F55A12.4 Aff_F55A12.4 P W All gene names: dhs-2; F55A12.4; 1F923; CE11123; CE26924; CE33397; NM_059174; NM_182014; NM_182015; WBGene00000966; WP:CE11123; WP:CE26924; WP:CE33397 WormBase description: dhs-2 encodes a short-chain dehydrogenase predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

F57B9.4 Aff_F57B9.4 P W All gene names: coq-2; F57B9.4; 3I27; CE28469; CE28470; CE32444; CE32445; CE32446; NM_066111; NM_066112; NM_181953; NM_181954; WBGene00000762; WP:CE28469; WP:CE28470; WP:CE32444; WP:CE32445; WP:CE32446 WormBase description: coq-2 encodes a para-hydroxybenzoate-polyprenyl transferase (UbiA prenyltransferase) whose yeast ortholog is mitochondrial.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F58G1.4 Aff_F58G1.4 P W All gene names: F58G1.4; 2N223; CE17924; WBGene00010266; WP:CE17924
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C                               

F58H1.3 Aff_F58H1.3 P W All gene names: F58H1.3; 5M415; CE39510; WBGene00010286; WP:CE39510 WormBase description: E-1 enzyme
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, ViswanathanM et al 2005                             
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

F59A6.1 Aff_F59A6.1 P W All gene names: ask-1; esp-8; nsy-1; F59A6.1; 2F319; CE33405; NM_062524; WBGene00003822; WP:CE33405 WormBase description: nsy-1 encodes a MAP kinase kinase kinase homolog that affects chemotaxis, egg laying, and pathogen response; NSY-1 activity is activated by the calmodulin kinase UNC-43, and is required for lateral signalling that leads to asymmetric olfactory neuron fates; interacts with SEK-1, and is expressed in the intestine, hypodermis, rectal gland cells, and neurons. WormBase CDS description: Protein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F59B8.2 Aff_F59B8.2 P W All gene names: F59B8.2; F59B8.2.1; F59B8.2.2; 4K204; CE03436; WBGene00010317; WP:CE03436 WormBase description: isocitrate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, herm soma                            
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

H10E21.1 Aff_H10E21.1 P W All gene names: H10E21.1; 3A635; CE32456; WBGene00019182; WP:CE32456
H19N07.3 Aff_H19N07.3 P W All gene names: H19N07.3; H19N07.3.1; H19N07.3.2; 5L598; CE16184; WBGene00010407; WP:CE16184
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

K01C8.7 Aff_K01C8.7 P W All gene names: K01C8.7; 2I565; CE02268; WBGene00010459; WP:CE02268 WormBase description: Mitochondrial carrier proteins
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K02B12.3 Aff_K02B12.3 P W All gene names: phi-15; K02B12.3; K02B12.3.1; K02B12.3.2; 1J86; CE32461; WBGene00010496; WP:CE32461 WormBase description: WD domain, G-beta repeat
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

K02E10.1 Aff_K02E10.1 P W All gene names: K02E10.1; CE39511; WBGene00019317; WP:CE39511; XD119 WormBase description: GTP-binding protein
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

K04F10.3 Aff_K04F10.3 P W All gene names: K04F10.3; 1G935; CE28586; WBGene00019396; WP:CE28586
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

K04G7.4 Aff_K04G7.4 P W All gene names: nuo-4; K04G7.4; K04G7.4a.1; K04G7.4a.2; K04G7.4a.3; K04G7.4a.4; K04G7.4b.1; K04G7.4b.2; 3I246; CE01361; CE31031; WBGene00019401; WP:CE01361; WP:CE31031 WormBase description: NADH dehydrogenase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K07A12.4 Aff_K07A12.4 P W All gene names: K07A12.4; 1J264; CE39388; CE39389; WBGene00010622; WP:CE39388; WP:CE39389 WormBase description: elongation factor 1-alpha
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

K07B1.4 Aff_K07B1.4 P W All gene names: K07B1.4; K07B1.4b.1; K07B1.4b.2; 5J811; CE11882; CE27391; WBGene00019464; WP:CE11882; WP:CE27391
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, McElwee et al 2003  T1 targets of daf-16,                                 
                                              Murphy et al 2003  Fig2 Class1 elongate lifespan,                                  
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K07C6.5 Aff_K07C6.5 P W All gene names: cyp-35A5; K07C6.5; 5E415; CE17176; NM_071691; WBGene00019473; WP:CE17176 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005 T1 xenobiotic                                
                                              induced P450                                                                       

K08H10.7 Aff_K08H10.7 P W All gene names: rde-1; K08H10.7; 5K468; CE28243; NM_171525; WBGene00004323; WP:CE28243
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

K10B3.7 Aff_K10B3.7 P W All gene names: gpd-3; K10B3.7; K10B3.7.1; K10B3.7.2; CE07370; NM_076133; WBGene00001685; WP:CE07370 WormBase description: gpd-3 encodes a predicted glyceraldehyde 3-phosphate dehydrogenase that affects embryonic viability; GPD-3 interacts with LIN-2 in two-hybrid assays.
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              Roy et al 2002  S3 muscle genes, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 LateList, Wang                             
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

M04G12.4 Aff_M04G12.4 P W All gene names: M04G12.4; M04G12.4b.1; M04G12.4b.2; M04G12.4b.3; 5N866; CE36495; CE36496; WBGene00010868; WP:CE36495; WP:CE36496 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

R01B10.4 Aff_R01B10.4 P W All gene names: R01B10.4; 5G526; CE18091; WBGene00019806; WP:CE18091
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

R01H2.5 Aff_R01H2.5 P W All gene names: R01H2.5; 3I150; CE00804; WBGene00019813; WP:CE00804
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

R02D3.7 Aff_R02D3.7 P W All gene names: R02D3.7; 4B8; CE18101; WBGene00019824; WP:CE18101
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

R02D3.8 Aff_R02D3.8 P W All gene names: R02D3.8; 4B10; CE18102; WBGene00019825; WP:CE18102
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E                                                                       

R03E9.1 Aff_R03E9.1 P W All gene names: mdl-1; R03E9.1; CE04784; NM_076735; WBGene00003163; WP:CE04784; XH361 WormBase description: human Max-interacting bHLH-Zip protein
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

R06A4.7 Aff_R06A4.7 P W All gene names: mes-2; R06A4.7; 2O673; CE28067; NM_064591; WBGene00003220; WP:CE28067 WormBase description: mes-2 encodes a SET domain-containing protein that is orthologous to the Drosophila Polycomb group protein Enhancer of zeste [E(Z)]; as a member of a Polycomb-like chromatin repressive complex with MES-3 and MES-6, MES-2 is required maternally for normal germline development and during larval development, for anteroposterior patterning; during germline development, the MES-2/MES-3/MES-6 complex is believed to be essential for maintaining repression of the X chromosome, and in transgenic animals, the complex is necessary for germline repression of repetitive transgenes; in axial patterning, the MES-2/MES-3/MES-6 complex is required in somatic tissues for maintaining homeotic gene repression, acting upstream of the Hox genes lin-39, mab-5, and egl-5, as well as the egl-5 target gene lin-32; in addition, MES-2 activity is required for normal levels and localization of MES-3 in >24-cell-stage embryos; MES-2 expression is detected in the primordial germ cells and germline nuclei throughout development, in all nuclei in early embryos, and in somatic nuclei, including those of the male tail, in L2 and L3 larvae; in the nucleus, MES-2 appears to localize to chromatin. WormBase CDS description: SET domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

R08D7.8 Aff_R08D7.4 P W All gene names: R08D7.8; CE33293; WBGene00011148; WP:CE33293
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen                                                                       

R11D1.11 Aff_R11D1.11 P W All gene names: dhs-21; R11D1.11; 5N212; CE39954; NM_073781; WBGene00000984; WP:CE39954 WormBase description: dhs-21 encodes a member of the short-chain dehydrogenases/reductases family (SDR) expressed in the intestine, hypodermis, uterus, and spermatheca. WormBase CDS description: Mouse adipocyte P27 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R11E3.2 Aff_R11E3.2 P W All gene names: R11E3.2; 4F535; CE19544; WBGene00020004; WP:CE19544 WormBase description: permease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

R12C12.6 Aff_R12C12.6 P W All gene names: R12C12.6; 2G336; CE02851; CE39619; WBGene00020026; WP:CE02851; WP:CE39619
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

R13A5.7 Aff_R13A5.7 P W All gene names: R13A5.7; 3I656; CE30389; WBGene00020050; WP:CE30389
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

R151.8 Aff_R151.8 P W All gene names: R151.8; 3I318; CE27201; WBGene00020111; WP:CE27201
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

R53.1 Aff_R53.1 P W All gene names: R53.1; R53.1a.1; R53.1a.2; R53.1b.1; R53.1b.2; CE02303; CE38215; WBGene00011271; WP:CE02303; WP:CE38215 WormBase description: FAD-1 like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

R53.2 Aff_R53.2 P W All gene names: R53.2; 2K254; CE03571; WBGene00011272; WP:CE03571 WormBase description: thymidylate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

T01C8.1 Aff_T01C8.1 P W All gene names: aak-2; T01C8.1; T01C8.1c.1; T01C8.1c.2; CE07458; CE31222; CE31223; NM_078309; NM_078310; WBGene00020142; WP:CE07458; WP:CE31222; WP:CE31223; XR417 WormBase description: aak-2 encodes one of two C. elegans homologs of the catalytic alpha subunit of AMP-activated protein kinases (AMPKs); in C. elegans, aak-2 functions downstream of stressors and energy level signals, as well as daf-2-mediated insulin signaling, to positively regulate adult lifespan; in addition, genetic analysis with daf-16 mutants indicates that, in regulating lifespan, AAK-2 likely acts in parallel with DAF-16; aak-2 activity is also required for dauer formation of daf-2 mutant animals at high temperature, in a manner that does not appear to be dependent upon the AMP:ATP ratio; in the germline, aak-2 functions downstream of daf-2 and daf-7, and in parallel to par-4 and aak-1, to negatively regulate germline proliferation during dauer development; in vitro, AAK-2 exhibits AMP-enhanced kinase activity against a known AMPK substrate.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T01E8.5 Aff_T01E8.5 P W All gene names: T01E8.5; 2K534; CE18165; WBGene00011333; WP:CE18165
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T02E1.2 Aff_T02E1.2 P W All gene names: T02E1.2; 1I796; CE32480; WBGene00011375; WP:CE32480
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

T02E1.5 Aff_T02E1.5 P W All gene names: dhs-3; T02E1.5; 1I788; CE13054; NM_059836; WBGene00000967; WP:CE13054 WormBase description: dhs-3 encodes a member of the short-chain dehydrogenases/reductases family (SDR) predicted to be mitochondrial. WormBase CDS description: 3-oxoacyl-[acyl-carrier protein] reductase
T02G5.8 Aff_T02G5.8 P W All gene names: kat-1; T02G5.8; 2H367; CE29990; NM_063054; WBGene00002183; WP:CE29990 WormBase description: kat-1 encodes a homolog of the human gene ACAT1, which when mutated leads to alpha-methylacetoaceticaciduria (OMIM:203750). WormBase CDS description: acetoacetyl-C0A thiolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T04A8.11 Aff_T04A8.11 P W All gene names: T04A8.11; 3F793; CE01066; WBGene00011412; WP:CE01066 WormBase description: 50S ribosomal protein L16
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

T04A8.12 Aff_T04A8.12 P W All gene names: tag-189; T04A8.12; 3F795; CE01067; WBGene00007045; WBGene00011413; WP:CE01067 WormBase description: Yeast 107.9KD PGK1-MAK32 intergenic hypothetical protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T04A8.16 Aff_T04A8.16 P W All gene names: clp-2; T04A8.16; 3F790; CE01070; NM_065563; WBGene00000543; WP:CE01070 WormBase description: clp-2 encodes a large calpain subunit that contains two predicted MIT (microtubule interacting and trafficking) domains and is homologous to the mammalian Calpain 7 proteins and the atypical, nuclear-localized Aspergillus calpain, PalB; by homology, CLP-2 is predicted to function as a calcium-dependent, cysteine protease that is involved in intracellular proteolysis and peptidolysis; however, as loss of clp-2 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of CLP-2 in C. elegans development and/or behavior is not yet known. WormBase CDS description: Calpain thiol protease
T05A7.3 Aff_T05A7.3 P W All gene names: T05A7.3; 2E967; CE04889; WBGene00020221; WP:CE04889
T05H4.13 Aff_T05H4.13 P W All gene names: alh-4; T05H4.13; T05H4.13c.1; T05H4.13c.2; 5G908; CE27441; CE30827; CE33307; NM_072233; NM_171471; NM_171472; WBGene00000110; WP:CE27441; WP:CE30827; WP:CE33307 WormBase description: aldehyde dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T08H4.3 Aff_T08H4.3 P W All gene names: ast-1; T08H4.3; 2E418; CE19576; WBGene00020368; WP:CE19576 WormBase description: ETS protein
T09B4.4 Aff_T09B4.4 P W All gene names: T09B4.4; 1G745; CE36196; WBGene00020378; WP:CE36196
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T12E12.3 Aff_T12E12.3 P W All gene names: T12E12.3; 4G309; CE13587; WBGene00020464; WP:CE13587
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen                                                       

T12G3.4 Aff_T12G3.4 P W All gene names: T12G3.4; 4M813; CE06440; WBGene00011739; WP:CE06440 WormBase description: strictosidine synthase like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T20B12.1 Aff_T20B12.1 P W All gene names: T20B12.1; 3I479; CE01407; WBGene00020600; WP:CE01407
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Romagnolo et al 2002                                 
                                              Fig3b Unkown, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

T20F10.1 Aff_T20F10.1 P W All gene names: tag-181; T20F10.1; 1K868; CE13844; WBGene00007047; WBGene00011863; WP:CE13844 WormBase description: Protein kinase C terminal domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T20F10.2 Aff_T20F10.2 P W All gene names: T20F10.2; 1K875; CE21191; WBGene00011864; WP:CE21191
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T20G5.9 Aff_T20G5.9 P W All gene names: T20G5.9; 3L299; CE34095; WBGene00011871; WP:CE34095
T20H4.3 Aff_T20H4.3 P W All gene names: prs-1; T20H4.3; T20H4.3a.1; T20H4.3a.2; 3I329; CE00748; CE37410; WBGene00004189; WP:CE00748; WP:CE37410 WormBase description: prs-1 encodes a predicted cytoplasmic prolyl-tRNA synthetase (ProRS), a class II aminoacyl-tRNA synthetase that catalyzes the attachment of proline to its cognate tRNA and is thus required for protein biosynthesis; PRS-1 is required for embryonic, germline, and postembryonic development.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Wang et al 2003  S5 genes                            
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

T21H8.1 Aff_T21H8.1 P W All gene names: CELIPRIN-BETA; T21H8.1; CE37412; WBGene00011904; WP:CE37412; XO484
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

T22C1.3 Aff_T22C1.3 P W All gene names: T22C1.3; 1I515; CE39412; WBGene00011914; WP:CE39412 WormBase description: cell division control protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T22C8.3 Aff_T22C8.3 P W All gene names: T22C8.3; 2I912; CE02351; WBGene00011924; WP:CE02351 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T23B12.1 Aff_T23B12.1 P W All gene names: T23B12.1; 5I951; CE14026; WBGene00020716; WP:CE14026
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T23B12.2 Aff_T23B12.2 P W All gene names: T23B12.2; 5I949; CE14028; WBGene00020717; WP:CE14028 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

T23G5.6 Aff_T23G5.6 P W All gene names: T23G5.6; 3K331; CE37794; WBGene00011964; WP:CE37794
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T23H4.2 Aff_T23H4.2 P W All gene names: nhr-69; T23H4.2; T23H4.2.1; T23H4.2.2; 1K456; CE32501; NM_060214; WBGene00003659; WP:CE32501 WormBase description: nhr-69 encodes a conserved nuclear receptor that is a member of the NR2 subfamily of nuclear receptors that contains Drosophila and human HNF4 (OMIM:600281, mutations in human HNF4A are associated with Type I MODY (maturity-onset diabetes of the young)); by homology, NHR-69 is predicted to function as a transcription factor that may activate or repress transcription in response to a hormonal signal; however, as loss of nhr-69 activity via RNAi does not result in any obvious abnormalities, the precise role of NHR-69 in C. elegans development and/or behavior is not yet known; nhr-69 is expressed strongly in the gut and hypodermis at all stages and is detected in the uterus during the late L4 and adult stages; nhr-69 expression is also occasionally detected in the rectal epithelia and posterior pharynx. WormBase CDS description: Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T26A5.6 Aff_T26A5.6 P W All gene names: T26A5.6; T26A5.6.1; T26A5.6.2; 3H538; CE29822; WBGene00020822; WP:CE29822
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, list of genes in                             
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T28A11.15 Aff_T28A11.15 P W All gene names: srt-63; T28A11.15; 5D732; CE35788; NM_071493; WBGene00020877; WP:CE35788 WormBase description: 7TM chemoreceptor, srt family
T28H10.3 Aff_T28H10.3 P W All gene names: T28H10.3; 5M993; CE14367; WBGene00012144; WP:CE14367 WormBase description: vacuolar processing enzyme like
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

W01A11.3 Aff_W01A11.3 P W All gene names: unc-83; W01A11.3; 5G967; CE31077; NM_072245; WBGene00006815; WP:CE31077 WormBase description: unc-83 encodes a novel transmembrane protein; during development, unc-83 activity is required for nuclear migrations in P cells, hyp7 hypodermal precursors, and intestinal cells; unc-83 is thus essential for proper vulva formation, ventral nerve cord development, and locomotion; UNC-83 co-localizes to the nuclear envelope with UNC-84, a conserved nuclear envelope component, and LMN-1/lamin; UNC-83 localization is dependent upon the UNC-84 SUN domain with which it interacts in vitro; as UNC-84 localization does not require UNC-83, UNC-84 is proposed to act upstream of UNC-83 in the pathway controlling nuclear migrations.
W01C8.5 Aff_W01C8.5 P W All gene names: W01C8.5; CE26751; WBGene00020921; WP:CE26751; XG314
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

W02A11.1 Aff_W02A11.1 P W All gene names: W02A11.1; 1N322; CE18988; WBGene00012192; WP:CE18988
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Wang et al 2003  S5                              
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

W02D3.2 Aff_W02D3.2 P W All gene names: W02D3.2; 1H315; CE14420; WBGene00020932; WP:CE14420 WormBase description: dihydroorotate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, herm                              
                                              soma enriched genes, Reinke et al 2004, GO categories,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

W02F12.4 Aff_W02F12.4 P W All gene names: W02F12.4; 5H186; CE39790; CE39791; CE39792; WBGene00020949; WP:CE39790; WP:CE39791; WP:CE39792
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

W02F12.5 Aff_W02F12.5 P W All gene names: W02F12.5; W02F12.5.1; W02F12.5.2; W02F12.5.3; 5H188; CE31083; WBGene00020950; WP:CE31083 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: dihydrolipoamide succinyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

W02H5.8 Aff_W02H5_1932.C P W All gene names: W02H5.8; W02H5.A; W02H5_1932.A; 5D126; CE21240; WBGene00020962; WP:CE21240
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

W06H12.1 Aff_Y53H1A.A P W All gene names: ztf-6; W06H12.1; W06H12.1.1; W06H12.1.2; 1L803; CE25145; WBGene00012317; WP:CE25145
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

W07E11.1 Aff_W07E11.1 P W All gene names: W07E11.1; CE02372; WBGene00012326; WP:CE02372; XK721 WormBase description: glutamate synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol                                                                        

W09B6.1 Aff_W09B6.1 P W All gene names: phi-47; pod-2; W09B6.1; W09B6.1a.1; W09B6.1a.2; 2B441; CE14734; CE36026; WBGene00004076; WBGene00021102; WP:CE14734; WP:CE36026 WormBase description: pod-2 is required for proper organization of the early embryonic cytoplasm; mutation of pod-2 causes a specific syndrome of embryonic defects both in polarity (maternal defects in anterior-posterior polarity of 1-2 cell stage embryos) and in osmotic resistance (abnormal sensitivity of early embryos to osmotic shock).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

W10G6.2 Aff_W10G6.2 P W All gene names: sgk-1; tag-74; W10G6.2; W10G6.2a.1; W10G6.2a.2; CE39527; CE39528; NM_078246; WBGene00004789; WP:CE39527; WP:CE39528; XQ870 WormBase description: Protein kinase C terminal domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B                               

Y23H5A.2 Aff_Y23H5A.2 P W All gene names: Y23H5A.2; 1D191; CE18358; WBGene00021269; WP:CE18358
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

Y34D9A.1 Aff_Y34D9A_151.C P W All gene names: Y34D9A.1; 1B494; CE27249; WBGene00021327; WP:CE27249
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

Y38F2AR.2 Aff_Y38F2A_6126.I P W All gene names: Y38F2AR.2; Y38F2AR.2.1; Y38F2AR.2.2; Y38F2A_6126.I; 4D153; CE21634; WBGene00021420; WP:CE21634
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

Y42G9A.6 Aff_Y42G9A_141.B P W All gene names: Y42G9A.6; Y42G9A.6b.1; Y42G9A.6b.2; Y42G9A.A; Y42G9A.B; 3H232; CE33223; CE39827; WBGene00021535; WP:CE33223; WP:CE39827
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, herm soma enriched genes                                                  

Y46H3A.6 Aff_Y46H3A.A P W All gene names: gly-7; Y46H3A.6; Y46H3A.A; 5C296; CE24309; NM_071111; WBGene00001632; WP:CE24309 WormBase description: gly-7 encodes an N-acetylgalactosaminyltransferase that exhibits activity when expressed in COS7 cells. WormBase CDS description: N-acetylgalactosaminyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

Y47G6A.11 Aff_Y47G6A_242.C P W All gene names: msh-6; Y47G6A.11; 1E29; CE28985; NM_058762; WBGene00003422; WP:CE28985 WormBase description: msh-6 is orthologous to the human gene MUTS (E. COLI) HOMOLOG 6 (MSH6; OMIM:600678), which when mutated leads to disease. WormBase CDS description: DNA mismatch repair protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

Y49F6B.1 Aff_Y49F6B_108.I P W All gene names: cyh-1; Y49F6B.1; Y49F6B.R; 2D797; CE36037; NM_062163; WBGene00021714; WP:CE36037
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y50E8A.4 Aff_Y50E8A.D P W All gene names: unc-61; Y50E8A.4; 5P212; CE24405; CE32023; NM_074237; NM_182356; WBGene00006795; WP:CE24405; WP:CE32023 WormBase description: unc-61, by alternative splicing, encodes two septin isoforms required (like the septin UNC-59) for normal axonal migration, distal tip cell migration, and postembryonic cytokinesis (at the cellular level) and for normal locomotion and formation of the postembryonic vulva, somatic gonad, and male tail (at the organismal level); both UNC-61A/B and UNC-59 are dispensable for embryonic cytokinesis and development, but are thought to be required for all postembryonic cytokinesis; UNC-61A/B and UNC-59 depend on each other for localization to the cytokinetic furrow.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y52B11A.2 Aff_Y52B11A.2 P W All gene names: Y52B11A.2; 1L558; CE20291; CE36243; WBGene00013122; WP:CE20291; WP:CE36243 WormBase description: Uncharacterized protein family UPF0029
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, GO categories                                                                

Y52B11A.3 Aff_Y52B11A.3 P W All gene names: Y52B11A.3; 1L571; CE20292; CE34125; WBGene00013123; WP:CE20292; WP:CE34125 WormBase description: Heme-binding domain in cytochrome b5 and oxidoreductases
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph                                                                            

Y53G8B.1 Aff_Y53G8B_9248.A P W All gene names: Y53G8B.1; 3E219; CE25427; WBGene00021817; WP:CE25427
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

Y54E10A.7 Aff_Y54E10A_159.B P W All gene names: Y54E10A.7; Y54E10A_159.B; 1D731; CE38572; WBGene00021829; WP:CE38572
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y54E2A.3 Aff_Y54E2A.3 P W All gene names: tac-1; Y54E2A.3; 2P38; 2P40; CE20302; NM_064658; WBGene00006381; WP:CE20302 WormBase description: tac-1 encodes the sole C. elegans member of the transforming acidic coiled-coil (TACC) protein family whose members contain highly conserved C-terminal coiled-coil domains; during early embryogenesis, TAC-1 activity is essential for such microtubule-based processes as pronuclear migration and mitotic spindle elongation; TAC-1 interacts in vivo with, and mutually stabilizes, ZYG-9, a microtubule-associated protein (MAP) also required for pronuclear migration; TAC-1 also interacts with ZYG-8, a kinase domain-containing MAP required for proper spindle positioning during anaphase of the first embryonic cell division; TAC-1 is a core component of centrosomes, and also localizes to the meiotic spindle poles, the mitotic spindle, and the cytoplasm.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

Y54G11B.1 Aff_Y54G11B.1 P W All gene names: Y54G11B.1; 2O747; CE16663; WBGene00013222; WP:CE16663
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

Y54G2A.18 Aff_Y94H6A_148.O P W All gene names: Y54G2A.18; Y54G2A.18.1; Y54G2A.18.2; Y94H6A_148.O; CE25462; WBGene00021883; WP:CE25462
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y67D8A.1 Aff_Y67D8A_386.A P W All gene names: Y67D8A.1; Y67D8A.1.1; Y67D8A.1.2; 4E15; CE31660; WBGene00022058; WP:CE31660 WormBase description: Y67D8A.1 is orthologous to the human gene PHOSPHORYLASE KINASE, BETA SUBUNIT (PHKB; OMIM:172490), which when mutated leads to glycogen storage disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

Y71D11A.3 Aff_Y71D11A.C P W All gene names: Y71D11A.3; 3C231; ACMSD; CE25548; CE32030; WBGene00022104; WP:CE25548; WP:CE32030
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Unkown,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

Y71F9AL.5 Aff_Y71F9A_282.A P W All gene names: gst-43; Y71F9AL.5; 1D471; CE25559; NM_058669; WBGene00001791; WP:CE25559 WormBase description: glutathione S-transferase
Y75B8A.29 Aff_Y75B8A.LL P W All gene names: Y75B8A.29; 3N421; CE23040; WBGene00013560; WP:CE23040
Y75B8A.4 Aff_Y75B8A.E P W All gene names: Y75B8A.4; Y75B8A.4.1; Y75B8A.4.2; 3N201; CE23016; WBGene00013541; WP:CE23016 WormBase description: ATPases associated with various cellular activities (AAA)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y87G2A.7 Aff_Y87G2A.L P W All gene names: Y87G2A.7; 1O167; CE23136; WBGene00013596; WP:CE23136
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

ZC376.1 Aff_ZC376.1 P W All gene names: ZC376.1; 5O656; CE15193; WBGene00013873; WP:CE15193 WormBase description: carboxylesterase
ZC376.6 Aff_ZC376.6 P W All gene names: ZC376.6; 5O671; CE15203; WBGene00013877; WP:CE15203
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

ZC410.2 Aff_ZC410.2 P W All gene names: ZC410.2; ZC410.2.1; ZC410.2.2; 4J839; CE35701; WBGene00013880; WP:CE35701 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: mitochondrial processing peptidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

ZC506.3 Aff_ZC506.3 P W All gene names: pssy-1; ZC506.3; ZC506.3.1; ZC506.3.2; ZC506.3.3; CE01681; WBGene00013920; WP:CE01681; XK585 WormBase description: phosphatidylserine synthase I
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S4 Early genes,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

ZC8.6 Aff_M03F4.8 P W All gene names: ZC8.6; CE38988; WBGene00022501; WP:CE38988; XF592
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster B, Wang et al 2003                            
                                               S3  genes pass one-way ANOVA, Wang et al 2003  S4                                 
                                              Dauer Enriched, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

ZK1307.5 Aff_ZK1307.5 P W All gene names: spe-2; sqv-8; ZK1307.5; 2J939; CE01694; NM_063675; WBGene00005026; WP:CE01694 WormBase description: The sqv-8 gene encodes a glucuronyl transferase, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-8 is homologous to three distinct glucuronyl transferases (GlcAT-I, GlcAT-P and GlcAT-D) that play a role in the synthesis of different glycoconjugates; the common requirement for SQV-8 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E                                                   

ZK1320.1 Aff_ZK1320.1 P W All gene names: ZK1320.1; 2J947; CE01698; WBGene00014251; WP:CE01698
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK328.8 Aff_ZK328.6 P W All gene names: tbx-7; ZK328.8; 3H114; CE29639; NM_065912; WBGene00006544; WP:CE29639 WormBase description: tbx-7 encodes one of 21 C. elegans T-box transcription factors; in large-scale RNAi screens for early embryonic defects, loss of tbx-7 activity results in no obvious abnormalities; thus, the precise role of tbx-7 in C. elegans development and/or behavior is not yet known.
ZK632.4 Aff_ZK632.4 P W All gene names: ZK632.4; 3K896; CE36417; WBGene00014013; WP:CE36417 WormBase description: ZK632.4 is orthologous to the human gene PHOSPHOMANNOSE ISOMERASE (MPI; OMIM:154550), which when mutated leads to disease. WormBase CDS description: Mannose 6-phosphate isomerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

ZK632.5 Aff_ZK632.5 P W All gene names: ZK632.5; 3K901; CE00422; WBGene00014014; WP:CE00422
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

ZK930.3 Aff_ZK930.3 P W All gene names: ZK930.3; 2M188; CE37306; CE37948; WBGene00014153; WP:CE37306; WP:CE37948
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order