Hill et al 2000, developmentally modulated cluster, 71 genes

Gene list file name:Hill2000_T1_cluster5-6.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,6)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0222.8 Aff_B0222.6 P W All gene names: col-10; B0222.8; 5J644; CE06699; NM_072975; WBGene00000599; WP:CE06699 WormBase description: col-10 encodes a collagen protein; expressed exclusively in hypodermal cells
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C02F4.2 Aff_C02F4.2 P W All gene names: cna-1; pph-3; pph2B-A; tax-6; C02F4.2; 4L258; CE07853; CE33593; PP2B; WBGene00006527; WP:CE07853; WP:CE33593 WormBase description: tax-6 encodes an ortholog of calcineurin A that is required for inhibition and adaptation of several sensory neurons and for the normal regulation of egg-laying by serotonin; TAX-6 stimulates transcription of rcn-1, and binds RCN-1 protein if free Ca[2+] is present; in general, calcineurin positively regulates calcium-dependent signaling.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

C14A4.9 Aff_C14A4.9 P W All gene names: C14A4.9; C14A4.9.1; C14A4.9.2; 2K891; CE02150; WBGene00007560; WP:CE02150
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C26B2.3 Aff_C26B2.3 P W All gene names: nhr-31; C26B2.3; C26B2.3a.1; C26B2.3a.2; C26B2.3b.1; C26B2.3b.2; C26B2.3c.1; C26B2.3c.2; C26B2.3c.3; C26B2.3c.4; 4I788; CE17474; CE31317; CE37709; NM_171391; WBGene00003625; WP:CE17474; WP:CE31317; WP:CE37709 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes                                                                              

C34C12.6 Aff_C34C12.6 P W All gene names: C34C12.6; 3E573; CE01514; WBGene00007925; WP:CE01514
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C35A5.6 Aff_C35A5.6 P W All gene names: C35A5.6; 5K989; CE05364; WBGene00007950; WP:CE05364
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

D2005.2 Aff_D2005.2 P W All gene names: nlp-8; D2005.2; 1I376; CE09066; NM_059757; WBGene00003746; WP:CE09066
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F08E10.7 Aff_F08E10.7 P W All gene names: F08E10.7; 5R961; CE18577; WBGene00008575; WP:CE18577
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, Romagnolo et al 2002  Fig3b Unkown, Wang et al                              
                                              2003  S4 Climbing, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

F09F9.2 Aff_F09F9.2 P W All gene names: F09F9.2; CE04347; WBGene00017307; WP:CE04347; XE728
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F10G2.2 Aff_F10G2.2 P W All gene names: F10G2.2; 5H809; CE09330; WBGene00017363; WP:CE09330
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen                                 

F13G3.1 Aff_F13G3.1 P W All gene names: ztf-2; F13G3.1; 1H871; CE05613; WBGene00008762; WP:CE05613 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F14E5.2 Aff_F14E5.2 P W All gene names: F14E5.2; 2I714; CE03205; CE36926; WBGene00008800; WP:CE03205; WP:CE36926 WormBase description: cysteine-rich fibroblast growth factor receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F15C11.1 Aff_F15C11.1 P W All gene names: sem-4; F15C11.1; F15C11.1.1; F15C11.1.2; 1H623; CE17673; NM_059596; WBGene00004773; WP:CE17673 WormBase description: Zinc finger, C2H2 type (7 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

F19H8.4 Aff_F19H8.4 P W All gene names: F19H8.4; 2O907; CE32632; WBGene00008964; WP:CE32632
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F23H12.5 Aff_F23H12.5 P W All gene names: F23H12.5; 5M843; CE05708; WBGene00009094; WP:CE05708 WormBase description: Thrombospondin type 1 domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F32H2.5 Aff_F32H2.5 P W All gene names: F32H2.5; 1J552; CE09880; WBGene00009342; WP:CE09880 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: fatty acid synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F35B12.3 Aff_F35B12.3 P W All gene names: F35B12.3; CE31929; NM_073541; WBGene00009383; WP:CE31929
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

F37A8.4 Aff_F37A8.4 P W All gene names: nlp-10; F37A8.4; 3F24; CE00989; NM_065394; WBGene00003748; WP:CE00989 WormBase description: nlp-10 encodes four predicted neuropeptide-like proteins; nlp-10 is part of a GGxY neuropeptide family that has members in several other nematode species; nlp-10 is expressed in a variety of neurons, including ASK, ADL, CAN, two lateral neurons, two anterior pharyngeal neurons, one tail neuron, and one male tail neuron; as loss of nlp-10 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-10-encoded peptides in development and/or behavior is not yet known.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

F42A10.7 Aff_F42A10.7 P W All gene names: F42A10.7; F42A10.7.1; F42A10.7.2; 3H268; CE01298; WBGene00018343; WP:CE01298
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, N2 vs daf-2 age                                  
                                              different gene, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F42E11.4 Aff_F42E11.4 P W All gene names: tni-1; F42E11.4; CE03311; NM_077505; WBGene00006584; WP:CE03311; XL994 WormBase description: tni-1 encodes a member of the troponin family that affects body morphology, locomotion, egg laying, and epithelial morphogenesis in a large-scale RNAi analysis. WormBase CDS description: troponin I
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Aging time course                                
                                              Fig3A muscle, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F46C8.6 Aff_F46C8.6 P W All gene names: dpy-7; F46C8.6; F46C8.6.1; F46C8.6.2; CE04580; NM_076873; WBGene00001069; WP:CE04580; XI156 WormBase description: dpy-7 encodes a cuticular collagen; DPY-7 functions as a structural constituent of the extracellular cuticle whose activity is required for normal cuticular morphology and hence, proper body form. WormBase CDS description: cuticle collagen
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

F52E1.2 Aff_F52E1.2 P W All gene names: F52E1.2; 5I887; CE35320; WBGene00018692; WP:CE35320
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F52E4.6 Aff_F52E4.6 P W All gene names: wrt-2; F52E4.6; CE07273; NM_076128; WBGene00006948; WP:CE07273; XD712 WormBase description: wrt-2 encodes a (potentially secreted) protein, expressed in seam cells and hypodermal syncytia, with similarity to the carboxy-terminal autoprocessing domain of Drosophila hedgehog; WRT-2 also contains a glutamine/asparagine-rich domain.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster B,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

F53G2.7 Aff_F53G2.7 P W All gene names: mnat-1; F53G2.7; F53G2.7.1; F53G2.7.2; 2C764; CE31957; WBGene00018769; WP:CE31957
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F54F2.1 Aff_F54F2.1 P W All gene names: F54F2.1; 3J913; CE00194; NM_066547; WBGene00018832; WP:CE00194 WormBase description: Vitronectin receptor alpha subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F57F10.1 Aff_F57F10.1 P W All gene names: abts-3; F57F10.1; 2G447; CE28476; CE31811; CE38965; NM_062827; NM_182218; WBGene00019018; WP:CE28476; WP:CE31811; WP:CE38965 WormBase description: The F57F10.1 gene encodes two proteins, F57F10.1A and F57F10.1B that are homologous to the Arabidopsis and Saccharomyces boron exporters, BOR1 and YNL275w, and closely similar to the to the human BOR1/YNL275w ortholog, BTS1; like BOR1 and YNL275w, F57F10.1A/B proteins might act to export borate ions.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 daf-16                                       
                                              Resveratrol                                                                        

F57F5.3 Aff_F57F5.3 P W All gene names: F57F5.3; 5M484; CE06001; WBGene00010205; WP:CE06001
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F58B4.3 Aff_F58B4.3 P W All gene names: F58B4.3; 5L409; CE06013; WBGene00010236; WP:CE06013
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

H04M03.4 Aff_H04M03.D P W All gene names: H04M03.4; H04M03.4.1; H04M03.4.2; H04M03.D; 4G653; CE38614; WBGene00019154; WP:CE38614 WormBase description: H04M03.4 encodes a UDP-galactopyranose mutase predicted to synthesize galactofuranose (Gal(f)) as a nucleotide sugar (UDP-Gal(f)); recombinant H04M03.4 has biochemical activity either in vivo (expressed in E. coli) or in vitro; orthologs of H04M03.4 are found in the urochordates Halocynthia and Ciona.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

H19M22.3 Aff_H19M22.3 P W All gene names: H19M22.3; 3D731; CE26937; CE29414; CE34904; WBGene00019212; WP:CE26937; WP:CE29414; WP:CE34904 WormBase description: protease
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

K02E10.4 Aff_K02E10.4 P W All gene names: K02E10.4; CE30083; CE37250; WBGene00019318; WP:CE30083; WP:CE37250; XD105
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

K02E11.4 Aff_K02E11.4 P W All gene names: K02E11.4; 5O728; CE11650; WBGene00010513; WP:CE11650
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

K02F2.5 Aff_K02F2.5 P W All gene names: K02F2.5; 1H380; CE31353; WBGene00019324; WP:CE31353
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S5 genes common to                               
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

K04H4.1 Aff_K04H4.1 P W All gene names: clb-2; emb-9; zyg-6; K04H4.1; 3K428; CE36389; CE36390; WBGene00001263; WP:CE36389; WP:CE36390 WormBase description: emb-9 encodes the alpha-1 chain of Type IV basement membrane collagen most closely equivalent to human COL4A1 (OMIM:120130) on the basis of biological function; EMB-9 forms heterotrimeric Type IV collagen with LET-2, the alpha-2-like chain, and is required for the assembly and/or secretion of LET-2; EMB-9 is essential for embryonic morphogenesis, particularly epidermal elongation, and for larval development; EMB-9 is expresed primarily by body wall muscles and some somatic cells of the gonad and is detected in nearly all basement membranes. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K07C11.9 Aff_K07C11.9 P W All gene names: cogc-6; K07C11.9; 5I700; CE07351; WBGene00019481; WP:CE07351
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

K07H8.10 Aff_K07H8.10 P W All gene names: K07H8.10; K07H8.10.1; K07H8.10.2; 4J52; CE18030; WBGene00019510; WP:CE18030 WormBase description: RNA-binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

K08B12.1 Aff_K08B12.1 P W All gene names: K08B12.1; 5G741; CE35337; WBGene00019520; WP:CE35337
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

K11D12.3 Aff_K11D12.3 P W All gene names: srr-4; K11D12.3; 5F503; CE30386; NM_071946; WBGene00005655; WP:CE30386
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

K12F2.1 Aff_K12F2.1 P W All gene names: myo-3; sup-3; K12F2.1; 5M708; CE34936; NM_073664; WBGene00003515; WP:CE34936 WormBase description: myo-3 encodes MHC A, the minor isoform of MHC (myosin heavy chain) that is essential for thick filament formation, and for viability, movement, and embryonic elongation; expressed in body muscle, the somatic sheath cell covering the hermaphrodite gonad, and also expressed in enteric muscle, vulval muscles of the hermaphrodite and the diagonal muscles of the male tail. WormBase CDS description: myosin heavy chain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Roy et al 2002  S2 positivecontrol L1                                   
                                              muscle, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

M03A8.4 Aff_M03A8.4 P W All gene names: gei-15; M03A8.4; M03A8.4.1; M03A8.4.2; CE34940; NM_076746; WBGene00001572; WP:CE34940; XH440
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

M04D8.7 Aff_M04D8.7 P W All gene names: M04D8.7; 3L125; CE00580; WBGene00010865; WP:CE00580
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

M88.6 Aff_M88.6 P W All gene names: pan-1; M88.6; 3F655; CE01041; CE23886; NM_065523; NM_065524; WBGene00003915; WP:CE01041; WP:CE23886 WormBase description: Leucine-rich repeats
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T08B2.10 Aff_T08B2.10 P W All gene names: rps-17; T08B2.10; T08B2.10.1; T08B2.10.2; 1G796; CE26948; NM_059394; WBGene00004486; WP:CE26948 WormBase description: rps-17 encodes a small ribosomal subunit S17 protein. WormBase CDS description: 40S ribosomal protein S17
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T08G5.3 Aff_T08G5.3 P W All gene names: T08G5.3; 5O506; CE18945; WBGene00011624; WP:CE18945
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T14B4.6 Aff_T14B4.6 P W All gene names: dpy-2; rol-2; T14B4.6; 2H5; CE04953; NM_062966; WBGene00001064; WP:CE04953 WormBase description: The dpy-2 gene encodes an unusual cuticular collagen that is required for maintaining the normal body length of the animal in later larval stages; dpy-2 interacts with other cuticular collagens such as dpy-10 and sqt-1, and suppresses mutations in glp-1, mup-1, and emb-5.
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T2 xenobiotic                               
                                              induced Collag, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T17H7.4 Aff_T17H7.4 P W All gene names: gei-16; T17H7.4; T17H7.4a.1; T17H7.4a.2; T17H7.4a.3; T17H7.4b.1; T17H7.4b.2; T17H7.4b.3; T17H7.4c.1; T17H7.4c.2; T17H7.4c.3; T17H7.4f.1; T17H7.4f.2; T17H7.4f.3; T17H7.4f.4; T17H7.4f.5; T17H7.4g.1; T17H7.4g.2; T17H7.4k.1; T17H7.4k.2; 3B346; CE28670; CE28671; CE28672; CE31612; CE31613; CE31614; CE31615; CE31616; CE31617; CE31618; CE33939; CE35016; NM_064843; NM_064844; NM_064845; NM_064846; NM_064847; NM_171067; NM_171068; NM_171069; NM_171070; NM_171071; NM_171859; WBGene00001573; WP:CE28670; WP:CE28671; WP:CE28672; WP:CE31612; WP:CE31613; WP:CE31614; WP:CE31615; WP:CE31616; WP:CE31617; WP:CE31618; WP:CE33939; WP:CE35016 WormBase description: gei-16 can encode a protein with similarity to the B20 antigen of the parasitic nematode Onchocerca volvulus; GEI-16 is required for ventral enclosure and elongation during embryonic development, larval development, and normal rates of postembryonic growth; GEI-16 interacts with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1 that is also essential for embryonic morphogenesis.
T19H12.1 Aff_T19H12.1 P W All gene names: ugt-9; T19H12.1; 5F375; CE13752; WBGene00020587; WP:CE13752 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, list of genes in cluster C, Reinke                              
                                              et al 2004, mixed sperm soma, Reinke et al 2004, GO                                
                                              categories, Romagnolo et al 2002 Fig5 genes in let-60                              
                                              timecour, Romagnolo et al 2002  Fig3b Detoxification,                              
                                              Wang et al 2003  S4 TransientList, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

T21B6.3 Aff_T21B6.3 P W All gene names: T21B6.3; CE31621; WBGene00011880; WP:CE31621; XL564 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). WormBase CDS description: f-spondin like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T21C9.8 Aff_T21C9.8 P W All gene names: T21C9.8; 5L68; CE06477; WBGene00011894; WP:CE06477 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Murphy                            
                                              et al 2003  Fig2 Class1 elongate lifespan, ViswanathanM                            
                                              et al 2005  S2 daf-16 Resveratrol                                                  

T25G12.5 Aff_T25G12.5 P W All gene names: T25G12.5; T25G12.5.1; T25G12.5.2; CE18284; WBGene00020812; WP:CE18284; XR830 WormBase description: acyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T26C5.2 Aff_T26C5.2 P W All gene names: T26C5.2; 2J525; CE35032; WBGene00012032; WP:CE35032
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

W01F3.3 Aff_W01F3.3 P W All gene names: mlt-11; phi-36; W01F3.3; 5V147; CE16531; WBGene00012186; WP:CE16531 WormBase description: Kunitz/Bovine pancreatic trypsin inhibitor domain (10 domains), Thyroglobulin type-1 repeat
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

W04G3.8 Aff_W04G3.8 P W All gene names: W04G3.8; W04G3.8.1; W04G3.8.2; CE19004; WBGene00012261; WP:CE19004; XL677
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Reinke et al 2004, IVb male soma enriched                               
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 LateList, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

Y113G7A.15 Aff_Y113G7A.M P W All gene names: Y113G7A.15; 5U564; CE27229; WBGene00013752; WP:CE27229
Y22F5A.3 Aff_Y22F5A.3 P W All gene names: ric-4; snap-25; Y22F5A.3; 5K742; CE32008; NM_073240; WBGene00004364; WBGene00012495; WP:CE32008 WormBase description: Y22F5A.3 encodes an ortholog of vertebrate SNAP-25 and S. cerevisiae Sec9p; SNAP-25 is associated with synaptosomes, required for axonal growth in vivo, and targeted by botulinum neurotoxins; UNC-86 and MEC-3 are required for Y22F5A.3 expression, and act on a regulatory element (I2h) in Y22F5A.3 conserved between the first introns of C. elegans and C. briggsae Y22F5A.3 genes; other conserved motifs in the promoter region (P1 and P2) and first intron (I1h, I1m, I2h, and I2m) are required for Y22F5A.3 expression in DA and DD motor neurons (P1), DB and DA neurons (I1m and I2m), amphid and phasmid neurons (P2), pharyngeal neurons (I1h), and mechanosensory neurons (I2h); Y22F5A.3 has no obvious function in mass RNAi assays WormBase CDS description: SNAP-25 family
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              neuronal, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster A,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y38C1AB.5 Aff_T02H7.1 P W All gene names: Y38C1AB.5; 4A762; WBGene00021407
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y38H6C.16 Aff_Y38H6C.16 P W All gene names: Y38H6C.16; 5V6; CE19110; WBGene00012628; WP:CE19110
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

Y43F8A.1 Aff_Y116F11.O P W All gene names: Y43F8A.1; Y43F8A.A; 5T843; CE21880; WBGene00012808; WP:CE21880
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y46C8AR.1 Aff_Y46C8_99.A P W All gene names: clec-76; Y46C8AR.1; Y46C8AR.1.1; Y46C8AR.1.2; 4E733; CE31650; WBGene00021587; WP:CE31650
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, herm soma                                    
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated                                                                          

Y51A2D.14 Aff_Y51A2D.14 P W All gene names: Y51A2D.14; 5T63; CE19210; WBGene00013081; WP:CE19210
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

Y55F3C.3 Aff_Y55F3C_751.G P W All gene names: Y55F3C.3; 4B505; CE29886; WBGene00021948; WP:CE29886
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Romagnolo et al 2002  Fig3b Unkown,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y76B12C.8 Aff_Y76B12C_67.D P W All gene names: Y76B12C.8; Y76B12C.8.1; Y76B12C.8.2; 4C743; CE23063; WBGene00022302; WP:CE23063
Y87G2A.19 Aff_Y87G2A.C P W All gene names: Y87G2A.19; CE38471; WBGene00044260; WP:CE38471
Y8G1A.2 Aff_Y8G1A.2 P W All gene names: inx-13; opu-13; Y8G1A.2; 1E318; CE18356; NM_058811; WBGene00002135; WP:CE18356 WormBase description: inx-13 encodes an innexin, an integral transmembrane channel protein that is a structural component of invertebrate gap junctions; INX-13 is essential for larval development and osmoregulation, and may be a component of the gap junctions that link the excretory and hypodermal cells; INX-13 is expressed embryonically in hypodermis and post-embryonically, in hypodermal seam cells, the excretory cell, and the developing vulva and spermatheca; in hypodermal cells, INX-13 localizes to the plasma membrane at points of contact between adjacent cells. WormBase CDS description: membrane protein; probably a channel protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Transporters,                               
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

ZC434.3 Aff_ZC434.3 P W All gene names: ZC434.3; 1K910; CE06578; WBGene00013891; WP:CE06578
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

ZC8.4 Aff_ZC8.4 P W All gene names: lfi-1; ZC8.4; CE31264; CE35814; CE38922; CE38923; NM_076446; NM_076447; WBGene00022500; WP:CE31264; WP:CE35814; WP:CE38922; WP:CE38923; XF611 WormBase description: lfi-1 encodes a coiled-coil protein that is similar to the Parascaris univalens Mitotic Antigen, PUMA1; LFI-1 was initially identified in yeast two-hybrid screens for proteins that interact with the coiled-coil protein LIN-5, which is essential for proper spindle positioning and chromosome segregation; antibody staining reveals that, in embryos, LFI-1 is expressed in metaphase cells in a diffuse area surrounding the kinetochore microtubules and overlapping with LIN-5 localization; in interphase cells, LFI-1 localizes to the nucleus and remains in the nuclear region even after nuclear envelope breakdown; as loss of lfi-1 activity, or the combined activities of lfi-1 and a related gene, F35D11.11, by RNAi results in no obvious defects, the precise role of LFI-1 in development is not yet known.
ZK1025.4 Aff_C27C7.2 P W All gene names: ZK1025.4; 1M48; CE37173; WBGene00014184; WP:CE37173
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b Unkown, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

ZK1151.1 Aff_ZK1151.3 P W All gene names: vab-10; ZK1151.1; 1M340; CE35150; CE35151; CE35152; CE36460; CE36461; CE36462; CE36463; CE39998; WBGene00006876; WP:CE35150; WP:CE35151; WP:CE35152; WP:CE36460; WP:CE36461; WP:CE36462; WP:CE36463; WP:CE39998 WormBase description: vab-10 encodes, by alternative splicing, two spectraplakins (VAB-10A and VAB-10B) that are jointly required for mechanical resilience of the epidermis under strain by the contraction of actin microfilaments mechanically linked to fibrous organelles (FOs); VAB-10A/B are, accordingly, required for elongation during embryonic morphogenesis; VAB-10A has C-terminal plectin repeats while VAB-10B has spectrin repeats; VAB-10A is required to keep the epidermis and extracellular matrix attached via FOs, while VAB-10B is required to keep the apical and basal epidermal plasma membranes connected during morphogenesis; vab-10a and vab-10b mutations complement one another; vab-10 is orthologous to human BPAG1 (dystonin or MACF2, OMIM:113810, encoding an autoantigen of bullous pemphigoid blistering disease) and dJ562N20.1 (MACF1), and to Drosophila SHORT STOP.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster C, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

ZK1290.12 Aff_ZK1290.12 P W All gene names: wrt-1; ZK1290.12; 2H823; CE15545; NM_063178; WBGene00006947; WP:CE15545 WormBase description: warthog gene
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt herm                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

ZK418.9 Aff_ZK418.9 P W All gene names: ZK418.9; ZK418.9b.1; ZK418.9b.2; ZK418.9b.3; ZK418.9b.4; 3I176; CE28190; CE34457; WBGene00022738; WP:CE28190; WP:CE34457 WormBase description: ZK418.9 encodes two proteins by alternative splicing, belonging to an ancient family of single-stranded nucleic acid-binding proteins, that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA; they are most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK770.3 Aff_ZK770.3 P W All gene names: inx-12; opu-12; ZK770.3; ZK770.3.1; ZK770.3.2; 1E324; CE15413; NM_058812; WBGene00002134; WP:CE15413 WormBase description: inx-12 (innexin=invertebrate connexin analogue) encodes a protein of the innexin family; innexins are gap junction proteins similar in function, though dissimilar in sequence to the vertebrate connexins; innexins are the only known gap junction proteins in invertebrates; inx-12 and inx-13 appear to be a tandom duplication; RNA interference of inx-12 results in an arrest at the L1 larval stage with fluid filled dead rods; this phenotype and sequence homology to Drosophila innexins suggest that INX-12 may be required to form gap junctions between the excretory canal and hypodermis, thus playing an essential role in osmoregulation; an INX-12::GFP fusion protein is expressed in the excretory canal.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA