Hill et al 2000, developmentally modulated cluster, 81 genes

Gene list file name:Hill2000_T1_cluster3-2.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,2)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0212.1 Aff_B0212.1 P W All gene names: B0212.1; 4E341; CE16767; WBGene00015035; WP:CE16767
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S4 Climbing,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

B0454.6 Aff_B0454.6 P W All gene names: B0454.6; 2D325; CE07756; WBGene00015197; WP:CE07756 WormBase description: amino acid permease
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C01G10.7 Aff_C01G10.7 P W All gene names: C01G10.7; 5P567; CE07816; WBGene00007234; WP:CE07816 WormBase description: citrate lyase beta chain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

C03E10.6 Aff_C03E10.6 P W All gene names: C03E10.6; 5L753; CE15586; WBGene00007283; WP:CE15586
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C05E7.2 Aff_C05E7.2 P W All gene names: C05E7.2; CE02976; WBGene00007344; WP:CE02976; XN558
C09G4.5 Aff_C09G4.5 P W All gene names: mes-6; C09G4.5; C09G4.5.1; C09G4.5.2; 4J277; CE24796; NM_069055; WBGene00003224; WP:CE24796 WormBase description: mes-6 encodes a WD repeat-containing protein that is orthologous to Drosophila Extra sex combs (Esc); as a member of a Polycomb-like chromatin repressive complex with MES-2 and MES-3, MES-6 is required maternally for normal germline development and during larval development, for anteroposterior patterning; during germline development, the MES-2/MES-3/MES-6 complex is believed to be essential for maintaining repression of the X chromosome, and in transgenic animals, the complex is necessary for germline repression of repetitive transgenes; in axial patterning, the MES-2/MES-3/MES-6 complex is required in somatic tissues for maintaining homeotic gene repression, acting upstream of the Hox genes lin-39, mab-5, and egl-5, as well as the egl-5 target gene lin-32; MES-6 expression is detected in the nuclei of all cells during early embryogenesis, in the germline precursors Z2 and Z3 and faintly in some somatic cells during late embryogenesis and the L1 larval stage, widely in later larvae, and in germline and oocyte nuclei in adults; normal MES-6 distribution is dependent upon wild-type activity of MES-2 and MES-3, and likewise, distribution of MES-3 is dependent upon wild-type activity of MES-2 and MES-6
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, fem1 enriched                                 
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

C27D6.4 Aff_C27D6.5 P W All gene names: C27D6.4; C27D6.4b.1; C27D6.4b.2; 2F468; CE32146; CE32147; CE32148; WBGene00016162; WP:CE32146; WP:CE32147; WP:CE32148 WormBase description: BZIP protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

C29F7.7 Aff_C29F7.7 P W All gene names: C29F7.7; CE08448; WBGene00007814; WP:CE08448; XO60
C30G4.4 Aff_C30G4.4 P W All gene names: C30G4.4; CE37205; CE37206; WBGene00016269; WP:CE37205; WP:CE37206; XR672
C34F6.6 Aff_C34F6.6 P W All gene names: C34F6.6; CE15675; WBGene00007940; WP:CE15675; XL826
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

C40H1.5 Aff_C40H1.5 P W All gene names: C40H1.5; 3K419; CE00113; WBGene00008040; WP:CE00113 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C42C1.8 Aff_C42C1.8 P W All gene names: C42C1.8; 4N57; CE16914; WBGene00016586; WP:CE16914
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C43G2.4 Aff_C43G2.4 P W All gene names: C43G2.4; CE34750; NM_068599; WBGene00016613; WP:CE34750
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes                                                                

C44E12.1 Aff_C44E12.1 P W All gene names: C44E12.1; CE27852; WBGene00016657; WP:CE27852; XI217
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C49F5.3 Aff_C49F5.3 P W All gene names: C49F5.3; CE08854; WBGene00008207; WP:CE08854; XM602
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, intrinsic, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

C49G7.10 Aff_C49G7.10 P W All gene names: C49G7.10; 5E512; CE08868; WBGene00016788; WP:CE08868
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Wang et al 2003  S3  genes pass one-way                            
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C52E2.2 Aff_C52E2.H P W All gene names: C52E2.2; C52E2.H; 2C125b; CE20597; WBGene00016881; WP:CE20597
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

E02H1.2 Aff_E02H1.2 P W All gene names: E02H1.2; 2J878; CE01537; WBGene00008456; WP:CE01537 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: GTP binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated, Wang et al 2003  S5                              
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

E02H1.6 Aff_E02H1.6 P W All gene names: E02H1.6; 2J887; CE28286; WBGene00008458; WP:CE28286 WormBase description: ATP binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

F09E10.8 Aff_F09E10.9 P W All gene names: F09E10.8; F09E10.8b.1; F09E10.8b.2; CE27939; CE30940; WBGene00017298; WP:CE27939; WP:CE30940; XC130
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

F09E5.10 Aff_F09E5.10 P W All gene names: F09E5.10; 2F638; CE02605; WBGene00017288; WP:CE02605
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F09F7.6 Aff_F09F7.6 P W All gene names: F09F7.6; 3G640; CE01238; WBGene00017303; WP:CE01238
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F11A5.9 Aff_F11A5.9 P W All gene names: F11A5.9; F11A5.9.1; F11A5.9.2; 5Q697; CE15787; WBGene00008677; WP:CE15787 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F13E9.7 Aff_F13E9.7 P W All gene names: F13E9.7; 4L647; CE05609; WBGene00008756; WP:CE05609 WormBase description: reverse transcriptase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F18G5.2 Aff_F18G5.2 P W All gene names: pes-8; F18G5.2; CE04410; NM_077157; WBGene00003981; WP:CE04410; XJ873 WormBase description: pes-8 encodes a novel protein that contains a proline-rich region and a predicted transmembrane domain, but no otherwise recognizably conserved domains; pes-8 was identified in promoter trapping screens and based on large-scale RNA-mediated interference (RNAi) screens, appears to be required for egg laying, germline development, locomotion, and regulation of adult lifespan; a pes-8 reporter is expressed at the cell surfaces of the spermathecal valve cell, the uterine wall, the vulva, and the rectal epithelium; strong expression is also detected in the uterus during its development; PES-8 may be required for normal morphology of the openings of the spermathecal valve, the vulva, and the rectum, a hypothesis consistent with its expression pattern and RNAi phenotype.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F21E9.3 Aff_F21E9.3 P W All gene names: F21E9.3; CE09527; WBGene00017667; WP:CE09527; XB952
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F26B1.3 Aff_F26B1.3 P W All gene names: ima-2; F26B1.3; F26B1.3.1; F26B1.3.2; 1G893; CE09675; NM_059423; WBGene00002073; WP:CE09675 WormBase description: importin alpha, nuclear transport factor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, Fig2b shared gemlines, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt males vs                            
                                              glp4 male enriched , Reinke et al 2004, wt herm vs wt                              
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F30B5.7 Aff_F30B5.2 P W All gene names: F30B5.7; 4E994; CE28225; WBGene00017936; WP:CE28225
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F31D5.2 Aff_F31D5.2 P W All gene names: F31D5.2; 2E507; CE29782; WBGene00017945; WP:CE29782
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F33D4.3 Aff_F33D4.3 P W All gene names: flp-13; F33D4.3; 4I462; CE17033; NM_068854; WBGene00001456; WP:CE17033
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F36F2.2 Aff_F36F2.2 P W All gene names: F36F2.2; 1J593; CE15976; WBGene00009476; WP:CE15976
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Murphy                            
                                              et al 2003  Fig2 Class1 elongate lifespan, ViswanathanM                            
                                              et al 2005  S2 sir-2.1 regulated, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, Wang et al 2003  S3  genes                            
                                              pass one-way ANOVA, Wang et al 2003  S4 Dauer Enriched,                            
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

F38B2.2 Aff_F38B2.2 P W All gene names: F38B2.2; CE02216; WBGene00009529; WP:CE02216; XL896
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F38B6.6 Aff_F38B6.6 P W All gene names: F38B6.6; CE30976; WBGene00018175; WP:CE30976; XH300
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

F38E9.4 Aff_F38E9.4 P W All gene names: F38E9.4; CE07200; WBGene00018186; WP:CE07200; XR67
F40E10.2 Aff_F40E10.2 P W All gene names: sox-3; F40E10.2; CE05838; NM_078038; WBGene00004950; WP:CE05838; XP308 WormBase description: sex-determining protein SOX3 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S4 Early genes,                               
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F42A9.8 Aff_F42A9.8 P W All gene names: F42A9.8; 4J384; CE07229; WBGene00018337; WP:CE07229
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

F49E7.2 Aff_F49E7.2 P W All gene names: F49E7.2; CE10784; WBGene00018634; WP:CE10784; XB714
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F54D5.12 Aff_Y62F5A.B P W All gene names: F54D5.12; F54D5.12.1; F54D5.12.2; 2L830; CE26814; WBGene00010055; WP:CE26814 WormBase description: yeast hyothetical YET1 like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F57F4.2 Aff_F57F4.2 P W All gene names: F57F4.2; 5G868; CE11340; WBGene00019016; WP:CE11340
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

K02D7.3 Aff_K02D7.3 P W All gene names: col-101; K02D7.3; 4B78; CE17996; NM_067504; WBGene00000675; WP:CE17996 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

K04F1.9 Aff_K04F1.9 P W All gene names: K04F1.9; 5C139; CE19960; WBGene00019388; WP:CE19960
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

K07E1.1 Aff_K07E1.1 P W All gene names: K07E1.1; 2E841; CE39745; WBGene00019489; WP:CE39745
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

K07E3.7 Aff_K07E3.7 P W All gene names: K07E3.7; K07E3.7a.1; K07E3.7a.2; K07E3.7a.3; CE37253; CE37254; WBGene00019493; WP:CE37253; WP:CE37254; XI710
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, herm soma enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

K08C7.5 Aff_K08C7.5 P W All gene names: fmo-12; fmo-2; K08C7.5; 4L447; CE06138; NM_069571; WBGene00001477; WP:CE06138 WormBase description: flavin-containing monoxygenase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K08F4.3 Aff_K08F4.3 P W All gene names: K08F4.3; 4K895; CE06151; WBGene00010678; WP:CE06151 WormBase description: translocon-associated protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, list of genes in                            
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, Reinke et al 2004, IVb male soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

K09F5.2 Aff_K09F5.2 P W All gene names: vit-1; K09F5.2; CE04746; NM_076904; WBGene00006925; WP:CE04746; XI345 WormBase description: vit-1
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

M195.2 Aff_M195.2 P W All gene names: M195.2; 2I653; CE34950; WBGene00010948; WP:CE34950
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

R02D3.8 Aff_R02D3.8 P W All gene names: R02D3.8; 4B10; CE18102; WBGene00019825; WP:CE18102
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E                                                                       

R03H10.1 Aff_R03H10.1 P W All gene names: R03H10.1; 2E473; CE02837; WBGene00019854; WP:CE02837 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
R05A10.2 Aff_R05A10.2 P W All gene names: R05A10.2; 4O943; CE16288; WBGene00011019; WP:CE16288
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, IVb male soma enriched genes                             

R07C3.5 Aff_R07C3.5 P W All gene names: R07C3.5; 2B217; CE12530; WBGene00019921; WP:CE12530
R08E5.3 Aff_R08E5.3 P W All gene names: R08E5.3; R08E5.3.1; R08E5.3.2; 5E251; CE12576; WBGene00019963; WP:CE12576
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T05A10.5 Aff_T05A10.5 P W All gene names: T05A10.5; CE13189; WBGene00011462; WP:CE13189; XL408 WormBase description: testes-specific protein like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ReichertK et al 2005  T3 xenobiotic                                        
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T05A12.4 Aff_T22D1.7 P W All gene names: T05A12.4; 4H661; CE37666; CE37667; WBGene00020235; WP:CE37666; WP:CE37667 WormBase description: helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

T06E8.1 Aff_T06E8.1 P W All gene names: acl-2; T06E8.1; 5K510; CE06378; NM_073177; WBGene00011543; WP:CE06378 WormBase description: T06E8.1 is orthologous to the human gene 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 2 (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE, BETA) (AGPAT2; OMIM:603100), which when mutated leads to disease; T06E8.1 protein is predicted to be mitochondrial. WormBase CDS description: 1-acyl-SN-glycerol-3-phophate acyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T13F2.2 Aff_T13F2.2 P W All gene names: T13F2.2; T13F2.2.1; T13F2.2.2; 4K562; CE13621; WBGene00011743; WP:CE13621 WormBase description: single-stranded DNA binding protein P9
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002  Fig3D                                  
                                              Oocyte-en, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

T13F3.6 Aff_T13F3.6 P W All gene names: T13F3.6; 5Q750; CE39775; WBGene00011753; WP:CE39775
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

T23D8.5 Aff_T23D8.5 P W All gene names: his-67; T23D8.5; 1K564; NM_060240; WBGene00001941 WormBase description: his-67 encodes an H4 histone required for embryonic viability and growth. WormBase CDS description: histone H4
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

T24B8.5 Aff_T24B8.5 P W All gene names: T24B8.5; 2J372; CE03713; WBGene00011979; WP:CE03713
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, ViswanathanM et al 2005  S2 daf-16                                       
                                              Resveratrol                                                                        

W01D2.5 Aff_W01D2.5 P W All gene names: W01D2.5; 2P99; CE20128; WBGene00012182; WP:CE20128
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, mixed oogenesis soma, ViswanathanM                              
                                              et al 2005  S2 sir-2.1 regulated                                                   

W02D7.4 Aff_W02D7.4 P W All gene names: W02D7.4; 5I774; CE14442; WBGene00020940; WP:CE14442
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster D, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y105C5A.8 Aff_Y105C5.G P W All gene names: Y105C5A.8; Y105C5A.G; 4Q374; CE39803; CE39804; WBGene00013633; WP:CE39803; WP:CE39804
Y110A2AL.9 Aff_Y110A2A_54.C P W All gene names: Y110A2AL.9; 2D156; CE23219; WBGene00022445; WP:CE23219
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

Y116A8A.9 Aff_Y116A8A.DD P W All gene names: map-2; Y116A8A.9; Y116A8A.9.1; Y116A8A.9.2; 4R792; CE24146; NM_070596; WBGene00003130; WP:CE24146
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y38C1AB.8 Aff_C15E6.1 P W All gene names: frm-5; T02H7.10; T02H7.5; T02H7.9; Y38C1AB.8; Y38C1AB.H; 4A786; CE39293; NM_067455; WBGene00001492; WP:CE39293 WormBase description: frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains; by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures; however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known; the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase.
Y41E3.8 Aff_Y41E3.8 P W All gene names: Y41E3.8; 4P792; CE18376; WBGene00012766; WP:CE18376
Y42A5A.3 Aff_Y42A5A.3 P W All gene names: Y42A5A.3; 5L576; CE20257; WBGene00012778; WP:CE20257
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen                                                                       

Y47H9C.1 Aff_Y47H9C.1 P W All gene names: Y47H9C.1; 1M424; CE20262; WBGene00012947; WP:CE20262
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y54E10BL.6 Aff_Y54E10B_152.C P W All gene names: glv-1; let-537; mek-2; Y54E10BL.6; Y54E10B_152.C; 1D574; CE25437; NM_058686; WBGene00003186; WP:CE25437 WormBase description: protein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y54E2A.10 Aff_Y54E2A.10 P W All gene names: Y54E2A.10; 2P77; CE20309; WBGene00013195; WP:CE20309
Y54G2A.3 Aff_Y94H6A_144.B P W All gene names: Y54G2A.3; 4D777; CE27491; WBGene00021869; WP:CE27491
Y57A10A.25 Aff_Y57A10A.Z P W All gene names: Y57A10A.25; Y57A10A.Z; 2M542; CE22629; WBGene00013265; WP:CE22629
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

Y75B12B.1 Aff_Y75B12B.1 P W All gene names: Y75B12B.1; 5P663; CE20370; WBGene00013567; WP:CE20370
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y75B12B.8 Aff_C41G6.13 P W All gene names: Y75B12B.8; 5P682; WBGene00013570
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y79H2A.2 Aff_C51G7.G P W All gene names: Y79H2A.2; Y79H2A.B; 3N116; CE37804; WBGene00013579; WP:CE37804
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

ZC395.5 Aff_ZC395.5 P W All gene names: ZC395.5; 3G357; CE01441; WBGene00022597; WP:CE01441
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Romagnolo et al 2002  Fig3b Unkown, Romagnolo et                            
                                              al 2002 Fig5 genes in let-60 timecour, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

ZC434.8 Aff_ZC434.8 P W All gene names: ZC434.8; 1K924; CE06583; WBGene00013894; WP:CE06583 WormBase description: arginine kinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK1127.5 Aff_ZK1127.5 P W All gene names: ZK1127.5; 2H339; CE32083; WBGene00022852; WP:CE32083
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, Romagnolo et al 2002  Fig3b Metabolism,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK287.3 Aff_ZK287.3 P W All gene names: ZK287.3; 5K155; CE06612; WBGene00013964; WP:CE06612
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown                                

ZK402.2 Aff_ZK402.2 P W All gene names: ZK402.2; CE05074; WBGene00022729; WP:CE05074; XC21
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK637.13 Aff_ZK637.13 P W All gene names: ZK637.13; ZK637.13.1; ZK637.13.2; 3K12; CE36418; WBGene00014030; WP:CE36418 WormBase description: Globin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories