Hill et al 2000, developmentally modulated cluster, 88 genes

Gene list file name:Hill2000_T1_cluster3-6.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,6)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_C03D6.1 Aff_C03D6.1 P W
AFF_K11D12.7 Aff_K11D12.7 P W
AFF_M02G9.1_3 Aff_M02G9.1_3 P W
AFF_R11D1.9 Aff_R11D1.9 P W
Aff_RRNA18S_3 Aff_RRNA18S_3 P W
AFF_T13C5.6 Aff_T13C5.6 P W
AFF_Y39A3C_82.B Aff_Y39A3C_82.B P W
B0035.4 Aff_B0035.4 P W All gene names: tag-317; B0035.4; B0035.4.1; B0035.4.2; B0035.4.3; 4M79; 4M81; CE05162; WBGene00007107; WP:CE05162 WormBase description: paramyosin like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C03H5.6 Aff_C03H5.6 P W All gene names: C03H5.6; 2A682; CE07899; WBGene00015408; WP:CE07899
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C06G1.1 Aff_C06G1.1 P W All gene names: C06G1.1; CE27054; WBGene00015545; WP:CE27054; XR251
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C11G6.1 Aff_C11G6.1 P W All gene names: taf-3; C11G6.1; CE05255; NM_078256; WBGene00006384; WP:CE05255; XQ959 WormBase description: taf-3 encodes the C. elegans ortholog of mammalian TAF3(TAFII140), a component of the RNA polymerase II TFIID transcription complex; TAF-3 contains a histone fold-like domain in its N-terminus and by homology, is predicted to function in transcriptional regulation; however, as loss of taf-3 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of taf-3 in C. elegans development and/or behavior is not yet known.
C15C7.7 Aff_C15C7.1 P W All gene names: C15C7.7; CE36786; WBGene00015793; WP:CE36786; XD785
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes                                                                              

C24A3.2 Aff_C24A3.2 P W All gene names: C24A3.2; C24A3.2a.1; C24A3.2a.2; C24A3.2a.3; C24A3.2a.4; C24A3.2a.5; C24A3.2b.1; C24A3.2b.2; CE04059; CE29184; WBGene00016033; WP:CE04059; WP:CE29184; XJ617
C24D10.6 Aff_C24D10.6 P W All gene names: C24D10.6; 4F924; CE16878; WBGene00016057; WP:CE16878
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C25F9.7 Aff_Y116F11.U P W All gene names: srw-86; C25F9.7; 5T876; CE17471; WBGene00005833; WP:CE17471 WormBase description: 7TM chemoreceptor, srw family
C26B2.1 Aff_C26B2.1 P W All gene names: C26B2.1; 4I784; CE04087; WBGene00016124; WP:CE04087
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol                                                     

C29F5.1 Aff_C29F5.1 P W All gene names: C29F5.1; 2G595; CE02508; WBGene00016210; WP:CE02508
C31H1.6 Aff_C31H1.6 P W All gene names: C31H1.6; 4G564; CE31326; CE32600; WBGene00016289; WP:CE31326; WP:CE32600
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C34C6.3 Aff_C34C6.3 P W All gene names: C34C6.3; 2I981; CE35832; WBGene00007916; WP:CE35832 WormBase description: EGF receptor/notch-like protein
C34C6.4 Aff_C34C6.4 P W All gene names: C34C6.4; 2I988; CE03052; WBGene00007917; WP:CE03052 WormBase description: choline dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, mixed sperm                               
                                              soma, Reinke et al 2004, GO categories, Reinke et al                               
                                              2004, herm soma enriched genes, Reinke et al 2004, fem3                            
                                              enriched genes, ViswanathanM et al 2005  S2 daf-16                                 
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

C47E12.8 Aff_C47E12.8 P W All gene names: CeCRMP/DHP-2; dhp-2; C47E12.8; 4K745; CE05452; NM_069396; WBGene00000964; WP:CE05452 WormBase description: The dhp-2 gene encodes an ortholog of the human gene DIHYDROPYRIMIDINASE (DPYS), which when mutated leads to dihydropyrimidinuria (OMIM:222748). WormBase CDS description: Ulip like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C49F8.3 Aff_C49F8.3 P W All gene names: C49F8.3; CE05458; WBGene00008215; WP:CE05458; XO4
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C49H3.3 Aff_C49H3.3 P W All gene names: C49H3.3; 4I689; CE04229; WBGene00016790; WP:CE04229
D2023.5 Aff_D2023.5 P W All gene names: D2023.5; 5M306; CE09075; WBGene00008409; WP:CE09075 WormBase description: thiosulphate sulphurtransferase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

D2092.4 Aff_D2092.4 P W All gene names: D2092.4; 1H188; CE30438; WBGene00017065; WP:CE30438
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              herm enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F02E8.3 Aff_F02E8.3 P W All gene names: aps-2; F02E8.3; CE07018; NM_076366; WBGene00000157; WP:CE07018; XF77 WormBase description: The aps-2 gene encodes an adaptin: specifically, it encodes an ortholog of the sigma2 subunit of adaptor protein complex 2 (AP-2), which mediates endocytosis from the plasma membrane; APS-2 appears to be required for embryonic and larval development and for normal body morphology, but is not required for endocytosis of yolk protein in developing oocytes; APS-2 is expressed in nearly all cells during embryogenesis, but during larval and adult stages, expression is confined to neurons and some hypodermal cells, including vulval hypodermal cells during the fourth larval stage. WormBase CDS description: Clathrin coat assembly protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

F10E9.4 Aff_F10E9.4 P W All gene names: F10E9.4; 3J399; CE00148; WBGene00017356; WP:CE00148
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F25H5.6 Aff_F25H5.6 P W All gene names: F25H5.6; F25H5.6.1; F25H5.6.2; 1J734; CE29591; WBGene00009128; WP:CE29591
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F28C6.8 Aff_F28C6.8 P W All gene names: F28C6.8; 2I897; CE09746; WBGene00009207; WP:CE09746 WormBase description: MAP kinase phosphatase like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F32G8.4 Aff_F32G8.4 P W All gene names: F32G8.4; 5L39; CE37903; WBGene00009340; WP:CE37903 WormBase description: Putative membrane protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F33A8.4 Aff_F33A8.4 P W All gene names: F33A8.4; F33A8.4.1; F33A8.4.2; CE17756; NM_063967; WBGene00009352; WP:CE17756
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F33D4.5 Aff_F33D4.5 P W All gene names: F33D4.5; F33D4.5.1; F33D4.5.2; 4I472; CE29308; WBGene00017997; WP:CE29308
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, herm soma                                    
                                              enriched genes, Romagnolo et al 2002  Fig3b Unkown,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F35C12.3 Aff_F35C12.3 P W All gene names: F35C12.3; F35C12.3b.1; F35C12.3b.2; 1K386; CE09915; CE38339; CE38340; WBGene00009408; WP:CE09915; WP:CE38339; WP:CE38340
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Romagnolo et al 2002  Fig3b Unkown, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              Dauer Enriched, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F35H10.6 Aff_F35H10.6 P W All gene names: F35H10.6; 4J65; CE38515; WBGene00018071; WP:CE38515
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT                                                                        

F40A3.2 Aff_F40A3.2 P W All gene names: F40A3.2; 5I361; CE10144; WBGene00018217; WP:CE10144
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F40G9.2 Aff_F40G9.2 P W All gene names: F40G9.2; 3A809; CE19849; WBGene00018240; WP:CE19849
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F41D9.2 Aff_F41D9.2 P W All gene names: F41D9.2; CE10238; WBGene00018282; WP:CE10238; XJ2
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F44F4.1 Aff_F44F4.1 P W All gene names: F44F4.1; 2L171; CE00996; WBGene00009700; WP:CE00996
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F46C3.3 Aff_F46C3.3 P W All gene names: hum-4; F46C3.3; CE39575; NM_077513; WBGene00002037; WP:CE39575; XM40 WormBase description: hum-4 encodes a class XII myosin, an unconventional myosin. WormBase CDS description: myosin like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F46C5.8 Aff_F46C5.8 P W All gene names: F46C5.8; 2J103; CE03349; WBGene00009783; WP:CE03349 WormBase description: endoplasmic reticular protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F52H2.7 Aff_F52H2.7 P W All gene names: F52H2.7; CE31179; WBGene00018719; WP:CE31179; XD186
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

F55A12.2 Aff_F55A12.2 P W All gene names: F55A12.2; F55A12.2d.1; F55A12.2d.2; 1F933; CE29396; CE30540; CE34317; CE34318; WBGene00018863; WP:CE29396; WP:CE30540; WP:CE34317; WP:CE34318
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F58G1.5 Aff_F58G1.5 P W All gene names: F58G1.5; 2N224; CE17925; WBGene00010267; WP:CE17925
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F59E11.7 Aff_F59E11.7 P W All gene names: F59E11.7; 5J471; CE11508; CE28568; WBGene00019113; WP:CE11508; WP:CE28568
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K02B9.4 Aff_K02B9.4 P W All gene names: elt-3; K02B9.4; CE23844; NM_077920; WBGene00001251; WP:CE23844; XO559 WormBase description: The elt-3 gene encodes a GATA transcription factor expressed in the embryonic hypodermis; specifically, it is expressed in expressed in all of the major hypodermal cells except the lateral seam cells. WormBase CDS description: GATA-binding transcription factor like
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes                                 

K03E6.6 Aff_K03E6.6 P W All gene names: pfn-3; K03E6.6; CE07332; NM_075804; WBGene00003991; WP:CE07332; XB698 WormBase description: Profilin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, fem3 enriched genes, Reinke et al 2004, list                              
                                              of genes in cluster B                                                              

K04G2.7 Aff_K04G2.7 P W All gene names: K04G2.7; 1I622; CE38203; WBGene00010566; WP:CE38203
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 LateList, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

K07H8.3 Aff_K07H8.3 P W All gene names: K07H8.3; 4J55; CE18023; WBGene00019505; WP:CE18023
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K11C4.5 Aff_K11C4.5 P W All gene names: kra-1; ryr-1; unc-68; K11C4.5; 5H382; CE12116; NM_072352; WBGene00006801; WP:CE12116 WormBase description: unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion; unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure; UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals; the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site; UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half; unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). WormBase CDS description: ryanodine receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

K11E8.1 Aff_Y43C5B.1 P W All gene names: dec-8; unc-43; K11E8.1; K11E8.1a.1; K11E8.1a.2; K11E8.1b.1; K11E8.1b.2; K11E8.1b.3; K11E8.1c.1; K11E8.1c.2; K11E8.1d.1; K11E8.1d.2; K11E8.1e.1; K11E8.1e.2; K11E8.1f.1; K11E8.1f.2; K11E8.1g.1; K11E8.1g.2; K11E8.1h.1; K11E8.1h.2; K11E8.1i.1; K11E8.1i.2; K11E8.1k.1; K11E8.1k.2; K11E8.1l.1; K11E8.1l.2; 4L90; CE28051; CE28052; CE28053; CE28054; CE28055; CE28056; CE28057; CE28058; CE28059; CE28060; CE28061; CE35590; WBGene00006779; WP:CE28051; WP:CE28052; WP:CE28053; WP:CE28054; WP:CE28055; WP:CE28056; WP:CE28057; WP:CE28058; WP:CE28059; WP:CE28060; WP:CE28061; WP:CE35590 WormBase description: unc-43(gf) mutants (in which unc-43 is overexpressed) suppress the excess motoneuron branching, and thus the uncoordinated phenotype, induced by an unc-6deltaC transgene. WormBase CDS description: Ca2+/calmodulin-dependent protein kinase
M01F1.6 Aff_M01F1.6 P W All gene names: M01F1.6; M01F1.6.1; M01F1.6.2; 3E601; CE37982; WBGene00010812; WP:CE37982
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M05D6.5 Aff_M05D6.5 P W All gene names: M05D6.5; M05D6.5.1; M05D6.5.2; 2I770; CE03503; WBGene00010878; WP:CE03503
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Romagnolo et al 2002  Fig3b Unkown, Shen et al                              
                                              2005  T1 hif-1 depend hypoxia, ViswanathanM et al 2005                             
                                              S2 sir-2.1 regulated                                                               

M117.1 Aff_M117.1 P W All gene names: M117.1; 4M583; CE32910; WBGene00010918; WP:CE32910 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R02D3.5 Aff_R02D3.5 P W All gene names: R02D3.5; R02D3.5.1; R02D3.5.2; 4A992; CE18099; WBGene00019823; WP:CE18099 WormBase description: farnesyltransferase alpha subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

R05D7.1 Aff_R05D7.1 P W All gene names: R05D7.1; R05D7.1.1; R05D7.1.2; 1M752; CE32475; WBGene00011026; WP:CE32475
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, IVb male soma enriched genes, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

R08B4.3 Aff_R08B4.3 P W All gene names: R08B4.3; CE20025; WBGene00011139; WP:CE20025; XL738
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R09F10.5 Aff_R09F10.5 P W All gene names: R09F10.5; CE07439; WBGene00019988; WP:CE07439; XI922
R10H10.1 Aff_R10H10.1 P W All gene names: lpd-8; R10H10.1; R10H10.1.1; R10H10.1.2; 4L153; CE06292; NM_069516; WBGene00003064; WP:CE06292 WormBase description: lpd-8 encodes a homolog of human and mouse HIRA-interacting protein-5; LPD-8 has C-terminal similarity to a domain of NifU observed in thioredoxin-like proteins and domains (COG0694), and is predicted to be mitochondrial on phylogenetic grounds. WormBase CDS description: Yeast hypothetical protein YKE0 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

T01C3.7 Aff_T01C3.7 P W All gene names: fib-1; T01C3.7; T01C3.7.1; T01C3.7.2; T01C3.7.3; T01C3.7.4; 5P482; CE12920; NM_074290; WBGene00001423; WP:CE12920 WormBase description: fibrillarin
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig5                                    
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

T01H8.2 Aff_T01H8.2 P W All gene names: T01H8.2; 1J146; CE13016; WBGene00011353; WP:CE13016 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: threonine dehydratase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T04F3.4 Aff_T04F3.4 P W All gene names: T04F3.4; 5M242; CE28952; WBGene00011439; WP:CE28952 WormBase description: EF hand domains
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T05C12.7 Aff_T05C12.7 P W All gene names: cct-1; tcp-1; T05C12.7; T05C12.7.1; T05C12.7.2; 2I477; CE02319; NM_063321; WBGene00000377; WP:CE02319 WormBase description: eukaryotic cytosolic chaperonin; affects viability and fertility, and is expressed in various muscle and neuronal cells: near the pharynx, near the anal sphincter, in the ventral nerve cord and the nerve ring; occasionally the expression is visible in hypodermal cells and in some vulval cells. WormBase CDS description: T-complex protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Roy et al 2002  S3                                 
                                              muscle genes, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T08A9.3 Aff_T08A9.3 P W All gene names: sng-1; T08A9.3; CE21167; NM_076838; WBGene00004912; WP:CE21167; XH947; sng1 WormBase description: synaptogyrin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, IVb male soma                             
                                              enriched genes                                                                     

T22C8.8 Aff_T22C8.8 P W All gene names: vab-9; T22C8.8; 2I924; CE32938; NM_063435; WBGene00006875; WP:CE32938 WormBase description: vab-9 encodes a claudin homolog orthologous to human brain cell membrane protein 1 (BCMP1) and Drosophila CG6982; VAB-9 colocalizes with HMP-1 to an apical layer of the adherens junctions of all epithelial cells, one layer more apically than AJM-1; vab-9 mutants have disorganized F-actin at the adherens junction, implying that VAB-9 links junctions to circumferential actin filaments; VAB-9 is also expressed in the nerve ring; VAB-9 requires the cadherin HMR-1 to localize to the cell membrane, and both alpha-catenin (HMP-1) and beta-catenin (HMP-2) to remain at the cell junction after membrane localization.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T23B12.3 Aff_T23B12.3 P W All gene names: T23B12.3; 5I947; CE14030; WBGene00020718; WP:CE14030 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

T23D8.4 Aff_T23D8.4 P W All gene names: eif-3.C; T23D8.4; T23D8.4.1; T23D8.4.2; 1K554; CE18958; NM_060237; WBGene00001226; WP:CE18958
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

VF13D12L.1 Aff_VF13D12L.A P W All gene names: VF13D12L.1; VF13D12L.1.1; VF13D12L.1.2; 2L990; CE31076; WBGene00012148; WP:CE31076 WormBase description: myo-inisitol-1-phosphate synthase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

W05H5.3 Aff_W05H5.3 P W All gene names: W05H5.3; 2M737; CE21261; WBGene00012285; WP:CE21261 WormBase description: phosphate permease
W06B11.4 Aff_W06B11.4 P W All gene names: hog-1; W06B11.4; CE35048; NM_076581; WBGene00001984; WP:CE35048; XG466 WormBase description: warthog
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b others,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

Y24F12A.2 Aff_Y24F12A.A P W All gene names: Y24F12A.2; 4M368; CE24193; WBGene00012497; WP:CE24193
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, ViswanathanM et al 2005                             
                                              S2 sir-2.1 regulated                                                               

Y38H8A.1 Aff_Y38H8A.1 P W All gene names: Y38H8A.1; 4O249; CE19118; WBGene00012635; WP:CE19118
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

Y39A3CR.4 Aff_Y39A3C_83.D P W All gene names: ddp-1; tim-8; tin-8; Y39A3CR.4; 3C949; CE21655; NM_065066; WBGene00000941; WP:CE21655 WormBase description: ddp-1 encodes the C. elegans ortholog of Saccharomyces cerevisiae Tim8p and human deafness/dystonia peptide (DDP; OMIM:300356, mutated in Mohr-Tranebjaerg syndrome); by homology, DDP-1 is predicted to be part of a heterooligomeric complex that localizes to the mitochondrial intermembrane space and facilitates translocation of proteins from the cytosol to the inner mitochondrial membrane; loss of ddp-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, indicating that ddp-1 is not essential for C. elegans development or may function redundantly with its paralogs, TIN-9, -10, and -13.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y41C4A.13 Aff_Y41C4A.13 P W All gene names: Y41C4A.13; 3M822; CE20253; WBGene00012759; WP:CE20253
Y46H3A.7 Aff_Y46H3A.H P W All gene names: Y46H3A.7; CE38646; WBGene00044344; WP:CE38646
Y48A6B.3 Aff_Y48A6B.3 P W All gene names: Y48A6B.3; Y48A6B.3.1; Y48A6B.3.2; 3M97; CE19186; WBGene00012964; WP:CE19186 WormBase description: Ribosomal protein L7Ae
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, GO categories,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

Y48E1B.5 Aff_Y48E1B.5 P W All gene names: Y48E1B.5; 2N858; CE35196; WBGene00013004; WP:CE35196
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

Y48E1C.4 Aff_Y48E1C.3 P W All gene names: Y48E1C.4; 2N724; CE32977; CE32978; WBGene00013017; WP:CE32977; WP:CE32978
Y53C12A.4 Aff_Y53C12A.4 P W All gene names: Y53C12A.4; Y53C12A.4.1; Y53C12A.4.2; 2J992; CE14890; WBGene00013140; WP:CE14890 WormBase description: Mouse MO25 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y54E10A.7 Aff_Y54E10A_159.B P W All gene names: Y54E10A.7; Y54E10A_159.B; 1D731; CE38572; WBGene00021829; WP:CE38572
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y55H10A.1 Aff_Y55H10A.1 P W All gene names: Y55H10A.1; Y55H10A.1.1; Y55H10A.1.2; 4E137; CE19628; WBGene00021952; WP:CE19628 WormBase description: cadherin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

ZC395.10 Aff_ZC395.10 P W All gene names: ZC395.10; ZC395.10.1; ZC395.10.2; 3G364; CE01436; WBGene00022599; WP:CE01436
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated, Wang et al 2003  S5                              
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

ZK1098.7 Aff_ZK1098.7 P W All gene names: ZK1098.7; ZK1098.7.1; ZK1098.7.2; 3K612; CE00566; WBGene00014224; WP:CE00566
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

ZK154.1 Aff_ZK154.1 P W All gene names: ZK154.1; CE31266; WBGene00022665; WP:CE31266; XI399
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK652.2 Aff_ZK652.2 P W All gene names: tomm-7; ZK652.2; 3I951; CE00448; NM_066305; WBGene00022783; WP:CE00448
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

ZK652.3 Aff_ZK652.3 P W All gene names: ZK652.3; 3I949; CE00449; WBGene00022784; WP:CE00449 WormBase description: ZK652.3 encodes a conserved eukaryotic protein with a ubiquitin-like fold.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK673.10 Aff_ZK673.10 P W All gene names: sdz-37; ZK673.10; 2K755; CE16744; WBGene00014064; WP:CE16744
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

ZK795.3 Aff_ZK795.3 P W All gene names: ZK795.3; 4N325; CE18464; WBGene00014083; WP:CE18464
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

ZK892.1 Aff_ZK892.1 P W All gene names: lec-3; ZK892.1; 2K289; CE18468; CE24743; CE32781; CE32782; CE32783; NM_063758; WBGene00002266; WP:CE18468; WP:CE24743; WP:CE32781; WP:CE32782; WP:CE32783 WormBase description: galactoside-binding lectin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol