Hill et al 2000, developmentally modulated cluster, 70 genes

Gene list file name:Hill2000_T1_cluster2-5.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,5)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_F58G6.3 Aff_F58G6.3 P W
B0228.7 Aff_B0228.7 P W All gene names: B0228.7; 2I48; CE34630; WBGene00015064; WP:CE34630
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C02F4.4 Aff_C02F4.4 P W All gene names: C02F4.4; 4L278; CE07855; WBGene00007264; WP:CE07855
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

C03H5.2 Aff_C03H5.2 P W All gene names: C03H5.2; 2A681; CE32110; WBGene00015404; WP:CE32110
C07E3.10 Aff_C07E3.10 P W All gene names: C07E3.10; 2K637; CE15607; WBGene00007420; WP:CE15607
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C16C10.11 Aff_C16C10.11 P W All gene names: C16C10.11; C16C10.11.1; C16C10.11.2; 3F241; CE01491; WBGene00007630; WP:CE01491
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C23H3.2 Aff_C23H3.2 P W All gene names: C23H3.2; 2A353; CE08321; CE27078; WBGene00016018; WP:CE08321; WP:CE27078
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C30F12.7 Aff_C30F12.7 P W All gene names: C30F12.7; 1H553; CE16887; WBGene00016266; WP:CE16887 WormBase description: isocitrate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

C33G3.3 Aff_C33G3.3 P W All gene names: C33G3.3; CE08559; WBGene00007903; WP:CE08559; XO686
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C34H4.4 Aff_C34H4.4 P W All gene names: col-107; C34H4.4; 4C313; CE20539; CE27821; NM_067693; NM_182305; WBGene00000681; WP:CE20539; WP:CE27821 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C39H7.4 Aff_C39H7.4 P W All gene names: C39H7.4; 4G376; CE06943; WBGene00016542; WP:CE06943
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C44F1.3 Aff_C44F1.3 P W All gene names: lec-4; C44F1.3; 3E862; CE02163; NM_065362; WBGene00002267; WP:CE02163 WormBase description: lec-4 encodes a predicted galectin that exhibits sugar binding properties in vitro. WormBase CDS description: galactoside binding lectin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C49F5.1 Aff_C49F5.1 P W All gene names: sams-1; C49F5.1; C49F5.1.1; C49F5.1.2; C49F5.1.3; CE08852; WBGene00008205; WP:CE08852; XM585 WormBase description: s-adenosylmethionine synthetase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C54E4.5 Aff_C54E4.5 P W All gene names: C54E4.5; 4C910; CE37495; WBGene00016920; WP:CE37495
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

CC8.2 Aff_CC8.A P W All gene names: CC8.2; CC8.2a.1; CC8.2a.2; 4E410; CE20615; CE23615; WBGene00016987; WP:CE20615; WP:CE23615
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Murphy et al 2003  Fig2 Class1 elongate                                  
                                              lifespan, Shen et al 2005  T1 hif-1 depend hypoxia,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

F02A9.2 Aff_F02A9.2 P W All gene names: far-1; F02A9.2; F02A9.2.1; F02A9.2.2; F02A9.2.3; 3K170; CE00133; NM_066609; WBGene00001385; WP:CE00133 WormBase description: far-1 encodes a fatty acid/retinol binding protein; expressed throughout development with highest expression levels in L3 stage larvae and in adult males. WormBase CDS description: O. volvulus 20Kd antigenic peptide
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F07A5.7 Aff_F07A5.7 P W All gene names: unc-15; F07A5.7; F07A5.7.1; F07A5.7.2; F07A5.7.3; F07A5.7.4; 1H954; CE09197; NM_059684; WBGene00006754; WP:CE09197 WormBase description: The unc-15 gene encodes a paramyosin ortholog; UNC-15 protein physically interacts with MHC A, one isoform of myosin heavy chain (MHC) in striated muscle; UNC-15 accumulation is decreased in the absence of UNC-54 (myosin B), implying that degradation of UNC-15 is inhibited by its binding myosin B; conversely, myosin B (but not MYO-3/myosin A) fails to accumulate in unc-15 mutants. WormBase CDS description: paramyosin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, IVb male soma enriched                               
                                              genes, Roy et al 2002  S2 positivecontrol L1 muscle,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F08F1.6 Aff_F08F1.6 P W All gene names: spp-13; F08F1.6; CE09253; NM_077027; WBGene00004998; WP:CE09253; XJ36 WormBase description: 7TM chemoreceptor, spp family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F09E5.3 Aff_F09E5.3 P W All gene names: F09E5.3; F09E5.3.1; F09E5.3.2; 2F665; CE02610; WBGene00017283; WP:CE02610 WormBase description: Deoxyribose-phosphate aldolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F10D11.6 Aff_F10D11.6 P W All gene names: F10D11.6; 1J22; CE23640; WBGene00008652; WP:CE23640
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

F13H8.5 Aff_F13H8.5 P W All gene names: F13H8.5; 2G544; CE36821; WBGene00017438; WP:CE36821 WormBase description: F13H8.5 encodes a protein with a domain of unknown function (DB; IPR002602) that is found in several worm proteins, and a glutamine/asparagine-rich domain. WormBase CDS description: Phospholipase ADRAB-B (Rabbit)
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

F14B8.6 Aff_F14B8.6 P W All gene names: F14B8.6; CE02649; WBGene00017448; WP:CE02649; XH548
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

F22B5.4 Aff_F22B5.4 P W All gene names: F22B5.4; 2I741; CE02199; WBGene00009042; WP:CE02199
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T2 Egl-9 hif-1                                 
                                              pathway genes, Bishop et al 2004  T1 Upregulated in                                
                                              vhl-1 vs WT, Reinke et al 2004, mixed sperm soma,                                  
                                              Reinke et al 2004, fem3 enriched genes, Shen et al 2005                            
                                               T1 hif-1 depend hypoxia, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F22B5.9 Aff_F22B5.9 P W All gene names: frs-2; F22B5.9; 2I755; CE20708; WBGene00001498; WP:CE20708 WormBase description: phenylalanyl-tRNA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

F27D4.1 Aff_F27D4.1 P W All gene names: F27D4.1; F27D4.1.1; F27D4.1.2; 1I279; CE24926; WBGene00009187; WP:CE24926 WormBase description: The F27D4.1 gene encodes an ortholog of the human gene ELECTRON-TRANSFER-FLAVOPROTEIN, ALPHA POLYPEPTIDE (ETFA), which when mutated leads to glutaricaciduria type IIA (OMIM:231680). WormBase CDS description: electron transfer flavoprotein alpha-subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

F32G8.6 Aff_F32G8.6 P W All gene names: cat-4; F32G8.6; 5L45; CE05795; NM_073309; WBGene00000298; WP:CE05795 WormBase description: cat-4 encodes an ortholog of the human GTP cyclohydrolase I gene (GCH1; OMIM:600225), which when mutated leads to dystonia; CAT-4 is involved in serotonin and dopamine biosynthesis that affects movement, mating behavior, foraging behavior, and cell migration; CAT-4 acts in the same genetic pathway as flp-1. WormBase CDS description: GTP cyclohydrolase I
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F35A5.3 Aff_F35A5.3 P W All gene names: abu-10; pqn-33; F35A5.3; CE04487; NM_076258; WBGene00000033; WP:CE04487; XE417 WormBase description: abu-10 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and a cysteine-rich repeat (DUF139); abu-10 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum (ER), and ABU-10 may function within the ER to protect the organism from damage by improperly folded nascent protein.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  Fig6A Resveratrol                              

F35B12.7 Aff_F35B12.7 P W All gene names: nlp-24; F35B12.7; F35B12.7.1; F35B12.7.2; 5M97; CE37515; NM_073545; WBGene00003762; WP:CE37515
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F37C12.3 Aff_F37C12.3 P W All gene names: F37C12.3; F37C12.3.1; F37C12.3.2; 3I273; CE33082; WBGene00018151; WP:CE33082 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F38A3.2 Aff_F38A3.2 P W All gene names: col-82; ram-2; ram-3; F38A3.2; 2L306; CE02214; NM_063961; WBGene00004300; WP:CE02214 WormBase description: ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

F38A5.10 Aff_F38A5.10 P W All gene names: nspb-4; F38A5.10; 4H361; CE10044; WBGene00018167; WP:CE10044 WormBase description: nspb family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, wt herm vs wt herm                                 
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F40A3.6 Aff_F40A3.6 P W All gene names: F40A3.6; 5I372; CE10152; WBGene00018221; WP:CE10152
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F42A8.2 Aff_F42A8.2 P W All gene names: tag-55; F42A8.2; F42A8.2.1; F42A8.2.2; F42A8.2.3; 2J642; CE01579; WBGene00006433; WP:CE01579 WormBase description: tag-55/F42A8.2 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT B, IRON SULFUR PROTEIN (SDHB; OMIM:185470), which when mutated leads to extraadrenal pheochromocytoma; F42A8.2 protein is predicted to be mitochondrial. WormBase CDS description: succinate dehydrogenase (ubiquinone) iron sulphur protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F42C5.7 Aff_F42C5.7 P W All gene names: grl-4; F42C5.7; 4I74; CE34016; NM_068765; WBGene00001713; WP:CE34016
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C                               

F43E2.5 Aff_F43E2.5 P W All gene names: F43E2.5; 2H652; CE07241; WBGene00018393; WP:CE07241 WormBase description: F43E2.5 encodes a methionine sulfoxide-S-reductase (MsrA) with experimentally confirmed activity.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, McElwee et al 2003  T1 targets of daf-16,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F43E2.7 Aff_F43E2.7 P W All gene names: F43E2.7; 2H664; CE32664; CE33087; WBGene00018395; WP:CE32664; WP:CE33087
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F47D12.6 Aff_F47D12.6 P W All gene names: F47D12.6; 3H376; CE01950; WBGene00018562; WP:CE01950
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S3  genes pass one-way ANOVA, Wang et al 2003  S4                                 
                                              genes pass two-wayANOVA P0                                                         

F47F6.1 Aff_F47F6.1 P W All gene names: lin-42; F47F6.1; 2B524; CE10706; CE29325; CE37237; WBGene00018572; WP:CE10706; WP:CE29325; WP:CE37237 WormBase description: lin-42 encodes a PAS domain-containing protein orthologous to the insect and mammalian Period proteins that function in the timing of circadian rhythms; during postembryonic development, lin-42 activity is required for the switch from larval to adult fates that occurs in the hypodermal seam cells during the fourth and final molt; as a component of the heterochronic pathway, genetic analysis suggests that lin-42 likely acts early in the heterochronic pathway, either downstream of or in parallel to lin-46, which encodes a predicted scaffolding protein required for L3- and adult-specific cell fates; during larval development, lin-42 mRNA levels oscillate with peak levels apparent during larval intermolts and low levels seen during ecdysis and after the L4-to-adult molt; a rescuing LIN-42::GFP fusion protein is expressed in lateral hypodermal cells, the hypodermal syncytium, and head and tail hypodermal cells beginning during late embryogenesis and continuing through adulthood; within cells, LIN-42 is detected at generally higher levels in nuclei than in cytoplasm, although expression in the latter is enhanced during the larval molts.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

F52E4.1 Aff_F52E4.1 P W All gene names: F52E4.1; F52E4.1a.1; F52E4.1a.2; CE07269; CE30139; WBGene00018701; WP:CE07269; WP:CE30139; XD709 WormBase description: F52E4.1 is orthologous to the human gene PROPIONYL-CoA CARBOXYLASE, BETA SUBUNIT (PCCB; OMIM:232050), which when mutated leads to propionicacidemia; F52E4.1 protein is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0, Zhang et al 2002, T1 mec-3                             
                                              dependent genes                                                                    

F53F4.5 Aff_F53F4.5 P W All gene names: fmo-14; fmo-4; F53F4.5; F53F4.5.1; F53F4.5.2; 5O84; CE30676; NM_073969; WBGene00001479; WP:CE30676 WormBase description: fmo-14 encodes a protein with homology to human hepatic flavin-containing monooxygenase 5. WormBase CDS description: flavin-containing monoxygenase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

F55C10.2 Aff_F55C10.2 P W All gene names: col-154; F55C10.2; 5L865; CE05952; NM_073485; WBGene00000727; WP:CE05952 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F59E11.5 Aff_F59E11.5 P W All gene names: F59E11.5; 5J475; CE37776; WBGene00019111; WP:CE37776
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

H14A12.2 Aff_H14A12.2 P W All gene names: fum-1; H14A12.2; H14A12.2b.1; H14A12.2b.2; H14A12.2b.3; H14A12.2b.4; H14A12.2b.5; 3I555; CE11580; CE32457; NM_066241; NM_181944; WBGene00001503; WP:CE11580; WP:CE32457 WormBase description: fum-1 is orthologous to human FUMARASE (FH; OMIM:136850), which when mutated leads to fumarase deficiency; FUM-1A and FUM-1B are predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

K02F2.2 Aff_K02F2.2 P W All gene names: K02F2.2; K02F2.2.1; K02F2.2.2; 1H413; CE17154; CEAHH; WBGene00019322; WP:CE17154 WormBase description: S-adenosylhomocysteine hydrolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

K04G7.4 Aff_K04G7.4 P W All gene names: nuo-4; K04G7.4; K04G7.4a.1; K04G7.4a.2; K04G7.4a.3; K04G7.4a.4; K04G7.4b.1; K04G7.4b.2; 3I246; CE01361; CE31031; WBGene00019401; WP:CE01361; WP:CE31031 WormBase description: NADH dehydrogenase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K06A4.3 Aff_K06A4.3 P W All gene names: K06A4.3; K06A4.3.1; K06A4.3.2; 5J979; CE06107; WBGene00010593; WP:CE06107 WormBase description: gelsolin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster A,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K07A3.1 Aff_K07A3_50.C P W All gene names: fbp-1; K07A3.1; K07A3.1.1; K07A3.1.2; K07A3.1.3; K07A3.B; 1D150; CE21023; NM_058603; WBGene00001404; WP:CE21023; fbp WormBase description: fbp-1 encodes fructose 1,6-bisphosphatase, a gluconeogenic enzyme that catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and inorganic phosphate in a reaction that reverses the third enzymatic step of glycolysis; in C. elegans, loss of fbp-1 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities; FBP-1 is orthologous to human FBP1 (OMIM:229700, mutated in FBP deficiency). WormBase CDS description: fructose-bisphosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K09A9.5 Aff_K09A9.5 P W All gene names: gas-1; K09A9.5; K09A9.5.1; K09A9.5.2; CE11980; NM_078168; WBGene00001520; WP:CE11980; XQ206 WormBase description: The gas-1 gene encodes a predicted subunit of the mitochondrial electron transport complex I that is involved in anesthetic sensitivity, fecundity, and lifespan. WormBase CDS description: NADH-ubiquinone oxidoreductase 49KD subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

K11G12.5 Aff_K11G12.5 P W All gene names: K11G12.5; CE02827; WBGene00019656; WP:CE02827; XH342 WormBase description: mitochondrial 2-oxoglutartae
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

K12H4.5 Aff_K12H4.5 P W All gene names: K12H4.5; K12H4.5.1; K12H4.5.2; 3J131; CE00270; WBGene00019680; WP:CE00270
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R07E5.4 Aff_R07E5.4 P W All gene names: R07E5.4; 3F485; CE01046; WBGene00011112; WP:CE01046 WormBase description: Glutaredoxin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R12E2.14 Aff_R12E2.14 P W All gene names: R12E2.14; 1E719; CE18146; WBGene00020039; WP:CE18146
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

R12E2.15 Aff_R12E2.15 P W All gene names: R12E2.15; 1E716; CE18147; WBGene00020040; WP:CE18147
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

R12E2.7 Aff_R12E2.7 P W All gene names: R12E2.7; 1E722; CE18139; WBGene00020033; WP:CE18139
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

T01B10.2 Aff_T01B10.2 P W All gene names: grd-14; T01B10.2; CE07456; NM_077040; WBGene00001703; WP:CE07456; XJ117
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T09B4.9 Aff_T09B4.9 P W All gene names: T09B4.9; 1G754; CE13473; WBGene00020383; WP:CE13473
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

T09F3.2 Aff_T09F3.2 P W All gene names: T09F3.2; 2K683; CE02342; WBGene00011662; WP:CE02342 WormBase description: carrier protein C2
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T22B2.6 Aff_T22B2.6 P W All gene names: T22B2.6; CE13938; WBGene00020670; WP:CE13938; XE532
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  T1 pqn genes,                                  
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T27E9.2 Aff_T27E9.2 P W All gene names: T27E9.2; T27E9.2.1; T27E9.2.2; 3O550; CE14265; WBGene00012094; WP:CE14265 WormBase description: ubiquinol-cytochrome c reductase complexn 11 KD protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, daf-2                                      
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene                                                           

W02A2.3 Aff_W02A2.C P W All gene names: pqn-74; W02A2.3; W02A2.C; 4O94; CE21233; NM_070161; WBGene00004156; WP:CE21233 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, intrinsic, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              list of genes in cluster C, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, ViswanathanM et al 2005  T1 pqn genes,                                  
                                              ViswanathanM et al 2005  Fig6A Resveratrol                                         

W08E12.7 Aff_W08E12_12.E P W All gene names: W08E12.7; W08E12.7.1; W08E12.7.2; W08E12.7.3; W08E12.E; 4E61; CE21275; WBGene00021088; WP:CE21275 WormBase description: peptidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

Y106G6H.2 Aff_Y106G6H.2 P W All gene names: pab-1; Y106G6H.2; Y106G6H.2a.1; Y106G6H.2a.2; Y106G6H.2a.3; Y106G6H.2a.4; Y106G6H.2a.5; Y106G6H.2a.6; Y106G6H.2b.1; Y106G6H.2b.2; Y106G6H.2b.3; Y106G6H.2b.4; Y106G6H.2b.5; Y106G6H.2b.6; 1L10; CE20412; CE36227; CE36228; NM_060326; WBGene00003902; WP:CE20412; WP:CE36227; WP:CE36228 WormBase description: pab-1 encodes a polyadenylate-binding protein (i.e., poly(A)-binding protein, or PAB); while not extensively characterized, PAB-1 has been successfully used as an epitope-tagged transgenic reagent for tissue-specific isolation of mRNAs.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

Y11D7A.9 Aff_Y11D7A.9 P W All gene names: Y11D7A.9; 4K18; CE20192; WBGene00012433; WP:CE20192
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

Y17G7B.7 Aff_Y17G7B.7 P W All gene names: tpi-1; Y17G7B.7; Y17G7B.7.1; Y17G7B.7.2; 2M328; CE19040; NM_064162; TPI; WBGene00006601; WP:CE19040 WormBase description: tpi-1 is orthologous to the human gene TRIOSEPHOSPHATE ISOMERASE 1 (TPI1; OMIM:190450), which when mutated leads to disease. WormBase CDS description: Triosephosphate isomerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

Y43F8B.1 Aff_Y116F11.QQ P W All gene names: Y43F8B.1; Y43F8B.P; 5U10; CE32015; CE32016; CE39834; WBGene00012812; WP:CE32015; WP:CE32016; WP:CE39834
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y47D7A.13 Aff_Y47D7A_143.B P W All gene names: Y47D7A.13; Y47D7A.13.1; Y47D7A.13.2; 5E914; CE22060; WBGene00021625; WP:CE22060
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, mixed sperm soma, Reinke                             
                                              et al 2004, wt herm vs wt herm enriched gen, Reinke et                             
                                              al 2004, fem3 enriched genes, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

Y54E10BL.5 Aff_Y54E10B_154.A P W All gene names: Y54E10BL.5; 1D570; CE22460; WBGene00021839; WP:CE22460
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZK1307.1 Aff_ZK1307.1 P W All gene names: ZK1307.1; ZK1307.1b.1; ZK1307.1b.2; 2J946; CE01690; CE35921; WBGene00014244; WP:CE01690; WP:CE35921
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 Climbing, Wang                             
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

ZK593.3 Aff_ZK593.3 P W All gene names: ZK593.3; 4L681; CE06624; WBGene00014003; WP:CE06624
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

ZK669.4 Aff_ZK669.4 P W All gene names: ZK669.4; ZK669.4.1; ZK669.4.2; 2I234; CE01115; WBGene00014054; WP:CE01115 WormBase description: ZK669.4 is orthologous to the human gene DIHYDROLIPOAMIDE BRANCHED CHAIN TRANSACYLASE (E2 COMPONENT OF BRANCHED CHAIN KETO ACID DEHYDROGENASE COMPLEX; (DBT), which when mutated leads to maple syrup urine disease, type II (OMIM:248610); the ZK669.4 protein is predicted to be mitochondrial with 68% accuracy. WormBase CDS description: lipoamide acyltransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Metabolism, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0