Golden et al 2004, daf-2 differentially expressed , 17 genes

Gene list file name:Golden2004_T2_daf-2_time.txt
Type of gene identifier:MA primer pair (sjj)
Description:Golden et al 2004, Table 2, daf-2 genes differentially expressed as a function of time  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C07B5.5 C07B5.5 P W All gene names: nuc-1; C07B5.5; CE00895; NM_077203; WBGene00003828; WP:CE00895; XK159 WormBase description: The nuc-1 gene encodes a DNase II homolog similar to mammalian and Drosophila DNaseII enzymes and is required for DNA degradation during apoptosis as well as for degradation of dietary DNA during normal feeding; during apoptosis, NUC-1 functions in apoptotic cells at an intermediate stage of DNA degradation, after the killing step, but prior to cell-corpse engulfment.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , McCarroll et al 2004                                    
                                              SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C12D12.6 C12D12.6 P W All gene names: C12D12.6; WBGene00015717; XE132
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , ViswanathanM et al 2005  S2                             
                                              daf-16 Resveratrol                                                                 

C34D4.15 C34D4.15 P W All gene names: col-113; C34D4.15; 4H916; CE17509; NM_068722; WBGene00000687; WP:CE17509
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Jones et al 2001  Non dauer                             
                                              genes P<0.05, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F14H3.3 F14H3.3 P W All gene names: F14H3.3; 5Q532; CE23651; WBGene00008822; WP:CE23651
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Reinke et al 2004,                                      
                                              intrinsic, Reinke et al 2004, wt vs glp-4 enriched                                 
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F14H3.5 F14H3.5 P W All gene names: F14H3.5; 5Q536; CE15830; WBGene00008824; WP:CE15830
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Reinke et al 2004,                                      
                                              intrinsic, Reinke et al 2004, wt vs glp-4 enriched                                 
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F23H12.4 F23H12.4 P W All gene names: col-1; dpy-15; sqt-3; F23H12.4; F23H12.4.1; F23H12.4.2; 5M833; CE05707; NM_073694; WBGene00005018; WP:CE05707 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Golden et al 2004, daf-2 differentially expressed ,                                
                                              Golden et al 2004, N2 vs daf-2 different genes at ,                                
                                              ReichertK et al 2005  T2 xenobiotic induced Collag,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                            
                                               S4 LateList                                                                       

F28D1.5 F28D1.5 P W All gene names: thn-2; F28D1.5; 4N149; CE05745; NM_069961; WBGene00009215; WP:CE05745 WormBase description: Arabidopsis pathogenesis-related protein 5 like
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, daf-2 differentially                             
                                              expressed , Golden et al 2004, N2 vs daf-2 age                                     
                                              different gene, Jones et al 2001  Non dauer genes                                  
                                              P<0.05, Jones et al 2001  T3 20 most abundant                                      
                                              Mixed-stage, Murphy et al 2003  Fig2 Class1 elongate                               
                                              lifespan, ReichertK et al 2005  T3 xenobiotic                                      
                                              downregulated, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

F30F8.2 F30F8.2 P W All gene names: F30F8.2; 1I404; CE28553; WBGene00009271; WP:CE28553 WormBase description: glutaminase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, Reinke et al 2004, herm                                  
                                              sperm, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster D                                                   

F49E8.5 F49E8.5 P W All gene names: dif-1; F49E8.5; F49E8.5.1; F49E8.5.2; 4I316; CE28408; NM_068822; WBGene00000996; WP:CE28408 WormBase description: dif-1 encodes a putative mitochondrial solute carrier, orthologous to human SLC25A20 (OMIM:212138, mutated in carnitine-acylcarnitine translocase deficiency) that is required for the maintenance of embryonic tissue differentiation and viability; expressed throughout development and in the intestinal cells and hypodermis of the embryo. WormBase CDS description: mitochondrial carrier family
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, McCarroll et al 2004  SFig5                              
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 LateList                                      

H05B21.4 H05B21.4 P W All gene names: srw-144; H05B21.4; 5D432; CE34568; NM_071404; WBGene00005891; WP:CE34568 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

M01E11.5 M01E11.5 P W All gene names: cey-3; M01E11.5; M01E11.5.1; M01E11.5.2; 1G140; CE12296; NM_059230; WBGene00000474; WP:CE12296 WormBase description: cey-3 encodes a protein with a cold-shock/Y-box domain; it is predicted to be mitochondrial by phylogenetic profiling.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, Fig2b shared                                    
                                              gemlines, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

T04C12.4 T04C12.4 P W All gene names: act-3; T04C12.4; T04C12.4.1; T04C12.4.2; T04C12.4.3; T04C12.4.4; 5L552; NM_073416; WBGene00000065; act1; act3 WormBase description: act-3 encodes an invertebrate actin, highly similar to ACT-1, ACT-2, and ACT-4, that functions in body wall muscle. WormBase CDS description: actin
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster C, Roy et al 2002  S3 muscle genes                                

T04C12.6 T04C12.6 P W All gene names: act-1; T04C12.6; T04C12.6.1; T04C12.6.2; T04C12.6.3; 5L561; CE13148; NM_073418; WBGene00000063; WP:CE13148 WormBase description: An actin that affects body wall and pharyngeal muscle structure and function and motility of animals. WormBase CDS description: actin
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, Reinke et al 2004, list of                               
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster C                                                                 

T15B7.4 T15B7.4 P W All gene names: col-142; T15B7.4; 5H313; CE13654; NM_072335; WBGene00000715; WP:CE13654 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, Reinke et al 2004, list of                               
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T27E9.2 T27E9.2 P W All gene names: T27E9.2; T27E9.2.1; T27E9.2.2; 3O550; CE14265; WBGene00012094; WP:CE14265 WormBase description: ubiquinol-cytochrome c reductase complexn 11 KD protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, daf-2                                      
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene                                                           

Y46H3A.3 Y46H3A.D P W All gene names: hsp-16.2; Y46H3A.3; Y46H3A.D; 5C282; CE22002; NM_071106; WBGene00002016; WP:CE22002 WormBase description: hsp-16.2 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; hsp-16.2 expression, strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; HSP-16.2 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease; HSP-16.2 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, daf-2 differentially                             
                                              expressed , Link et al 2003  T3 Abeta highly induced,                              
                                              Link et al 2003  T2 Abeta induced, Murphy et al 2003                               
                                              Fig2 Class1 elongate lifespan, Romagnolo et al 2002                                
                                              Fig2a heat shock, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

ZC373.7 ZC373.7 P W All gene names: col-176; ZC373.7; CE02380; NM_077291; WBGene00000749; WP:CE02380; XK697 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, wt herm vs                              
                                              wt herm enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster B, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated