Dybbs et al 2005, tom-1 vs wt different genes, 20 genes

Gene list file name:Dybbs2005_Fig6_tom-1_vs_wt_differ_genes.txt
Type of gene identifier:Affymetrix probe set
Description:Dybbs2005 et al 2005, reduced expression in
tom-1(nu468) compared with wt (fold-change <-0.5, p<0.01)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C03G6.15 189512_at P W All gene names: cyp-35A2; C03G6.15; 5H840; CE35217; NM_072479; WBGene00015400; WP:CE35217 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, ReichertK et al 2005 T1 xenobiotic induced                               
                                              P450, Reinke et al 2004, herm soma enriched genes, Wang                            
                                              et al 2003  S6 removed genes of contamination                                      

C50F4.7 188708_at P W All gene names: his-37; C50F4.7; 5K27; NM_073065; WBGene00001911 WormBase description: his-37 encodes an H4 histone. WormBase CDS description: histone H4
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C55F2.1 184839_at P W All gene names: C55F2.1; C55F2.1b.1; C55F2.1b.2; 4I663; CE33606; CE35845; CE37714; WBGene00016957; WP:CE33606; WP:CE35845; WP:CE37714 WormBase description: transferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

F08A8.2 194059_at P W All gene names: F08A8.2; 1N537; CE17634; WBGene00008565; WP:CE17634 WormBase description: ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F09C8.1 171932_x_at, 190450_s_at P W All gene names: F09C8.1; CE31470; WBGene00008621; WP:CE31470; XQ774 WormBase description: phospholipase precursor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F15B9.1 193272_s_at P W All gene names: far-3; F15B9.1; 5N476; CE09406; NM_073850; WBGene00001387; WP:CE09406 WormBase description: O.volvulus antigen peptide like
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F20G2.2 188945_at P W All gene names: F20G2.2; 5O234; CE09505; WBGene00008986; WP:CE09505 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F23F12.12 171769_x_at P W All gene names: F23F12.12; 3H599; CE29282; WBGene00017756; WP:CE29282
F29G6.3 172455_x_at P W All gene names: F29G6.3; F29G6.3b.1; F29G6.3b.2; F29G6.3c.1; F29G6.3c.2; CE18655; CE36483; CE36484; WBGene00009259; WP:CE18655; WP:CE36483; WP:CE36484; XM130
F43C1.5 186541_at P W All gene names: F43C1.5; 3F319; CE28026; WBGene00009649; WP:CE28026
F57G4.6 178459_s_at P W All gene names: F57G4.6; 5S121; CE18771; WBGene00010211; WP:CE18771
H17B01.1 189933_s_at P W All gene names: H17B01.1; 2B799; CE27184; CE27185; WBGene00019207; WP:CE27184; WP:CE27185 WormBase description: sugar transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes                                                                     

K08F8.1 189818_at P W All gene names: K08F8.1; K08F8.1a.1; K08F8.1a.2; K08F8.1a.3; K08F8.1a.4; K08F8.1b.1; K08F8.1b.2; K08F8.1c.1; K08F8.1c.2; K08F8.1c.3; K08F8.1c.4; K08F8.1d.1; K08F8.1d.2; K08F8.1e.1; K08F8.1e.2; K08F8.1e.3; K08F8.1e.4; K08F8.1e.5; K08F8.1e.6; 2J37; CE03467; CE32906; CE35895; CE37257; CE37258; WBGene00010681; WP:CE03467; WP:CE32906; WP:CE35895; WP:CE37257; WP:CE37258 WormBase description: ribosomal S6 kinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K11E8.1 193459_s_at P W All gene names: dec-8; unc-43; K11E8.1; K11E8.1a.1; K11E8.1a.2; K11E8.1b.1; K11E8.1b.2; K11E8.1b.3; K11E8.1c.1; K11E8.1c.2; K11E8.1d.1; K11E8.1d.2; K11E8.1e.1; K11E8.1e.2; K11E8.1f.1; K11E8.1f.2; K11E8.1g.1; K11E8.1g.2; K11E8.1h.1; K11E8.1h.2; K11E8.1i.1; K11E8.1i.2; K11E8.1k.1; K11E8.1k.2; K11E8.1l.1; K11E8.1l.2; 4L90; CE28051; CE28052; CE28053; CE28054; CE28055; CE28056; CE28057; CE28058; CE28059; CE28060; CE28061; CE35590; WBGene00006779; WP:CE28051; WP:CE28052; WP:CE28053; WP:CE28054; WP:CE28055; WP:CE28056; WP:CE28057; WP:CE28058; WP:CE28059; WP:CE28060; WP:CE28061; WP:CE35590 WormBase description: unc-43(gf) mutants (in which unc-43 is overexpressed) suppress the excess motoneuron branching, and thus the uncoordinated phenotype, induced by an unc-6deltaC transgene. WormBase CDS description: Ca2+/calmodulin-dependent protein kinase
M01A10.2 186480_s_at P W All gene names: tag-23; tom-1; tomo-1; M01A10.2; 1G129; CE12230; CE34347; CE34348; CE39751; NM_059222; NM_059225; NM_170866; WBGene00006594; WP:CE12230; WP:CE34347; WP:CE34348; WP:CE39751
M03B6.1 179240_at P W All gene names: M03B6.1; CE12334; WBGene00010833; WP:CE12334; XO459
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R13H8.1 181992_s_at P W All gene names: daf-16; daf-17; R13H8.1; R13H8.1e.1; R13H8.1e.2; 1L351; CE28771; CE28772; CE28773; CE33160; CE38722; CE38723; WBGene00000912; WP:CE28771; WP:CE28772; WP:CE28773; WP:CE33160; WP:CE38722; WP:CE38723 WormBase description: daf-16 encodes a transcription factor of the HNF-3/forkhead family (orthologous to mammalian AFX, FKHR, and FKHRL1) that acts in an insulin-mediated pathway to affect dauer formation, and that also affects life span and reproduction; DAF-16 can interact with CBP-1 in vitro, and interacts genetically both with other genes in the insulin signaling and with the nuclear hormone receptor DAF-12; daf-16 is broadly expressed in most if not all cells (though expression in the pharynx and in the somatic gonad differ for the two isoforms); DAF-16 is homologous to human FORKHEAD BOX O1A (FOXO1A), which when mutated leads to rhabdomyosarcoma (OMIM:136533).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McElwee et al 2003  Fig4 daf-16 target lifspan,                             
                                              Wang et al 2003  S4 TransientList, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0, Wang et al 2003  Fig7 daf-16                                                   

Y54G2A.6 173144_at P W All gene names: clec-85; Y54G2A.6; 4D619; CE27494; WBGene00021872; WP:CE27494
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

ZK1307.1 187462_at P W All gene names: ZK1307.1; ZK1307.1b.1; ZK1307.1b.2; 2J946; CE01690; CE35921; WBGene00014244; WP:CE01690; WP:CE35921
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 Climbing, Wang                             
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

ZK131.9 192280_s_at P W All gene names: his-15; ZK131.9; 2O109; NM_064487; WBGene00001889 WormBase description: his-15 encodes an H2B histone. WormBase CDS description: histone H2B
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma