Baugh et al 2003, subclass SE_143min, 66 genes

Gene list file name:Baugh2003_classSEpi_143min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass SE_143min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_R05F9.12 Aff_R05F9.12 P W
B0228.6 Aff_B0228.6 P W All gene names: B0228.6; 2I44; CE31283; WBGene00015063; WP:CE31283
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0285.8 Aff_B0285.8 P W All gene names: ckb-1; B0285.8; 3F455; CE33590; NM_065478; WBGene00000511; WP:CE33590 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0391.9 Aff_B0391.9 P W All gene names: B0391.9; 5Q70; CE17337; WBGene00007164; WP:CE17337
C01B12.2 Aff_C01B12.2 P W All gene names: C01B12.2; 2A311; CE39124; WBGene00015285; WP:CE39124
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C02B8.6 Aff_C02B8.6 P W All gene names: C02B8.6; CE29656; WBGene00015324; WP:CE29656; XI752 WormBase description: DNA repair protein RAD16 (yeast, weak)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C02D5.2 Aff_C02D5.2 P W All gene names: C02D5.2; 3J647; CE00034; CE39554; WBGene00015336; WP:CE00034; WP:CE39554
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

C02F12.1 Aff_C02F12.1 P W All gene names: tsp-17; C02F12.1; CE35213; NM_076233; WBGene00006643; WP:CE35213; XE303 WormBase description: transpanin
C05D11.13 Aff_C05D11.13 P W All gene names: C05D11.13; 3H532; CE03930; WBGene00015488; WP:CE03930
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D11.5 Aff_C05D11.5 P W All gene names: C05D11.5; 3H496; CE01135; WBGene00015483; WP:CE01135
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, mixed sperm                               
                                              soma, Reinke et al 2004, fem3 enriched genes,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C05D9.3 Aff_C05D9.3 P W All gene names: C05D9.3; CE35381; WBGene00015472; WP:CE35381; XB733
C06E1.10 Aff_C06E1.10 P W All gene names: rha-2; C06E1.10; 3J700; CE29563; WBGene00015525; WP:CE29563 WormBase description: The C06E1.10 gene encodes a DEAH helicase orthologous to the Drosophila KURZ, the human KIAA1517, and the S. cerevisiae ECM16 proteins. WormBase CDS description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

C08F8.8 Aff_C08F8.8 P W All gene names: nhr-67; C08F8.8; 4L939; CE18491; NM_069693; WBGene00003657; WP:CE18491 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C11G6.4 Aff_C11G6.4 P W All gene names: nhr-28; C11G6.4; C11G6.4a.1; C11G6.4a.2; C11G6.4b.1; C11G6.4b.2; C11G6.4b.3; CE27061; CE37954; WBGene00003624; WP:CE27061; WP:CE37954; XQ973 WormBase description: nuclear hormone receptor, nhr-28
C14B9.6 Aff_C14B9.5 P W All gene names: gei-8; pqn-12; C14B9.6; 3J202; CE29577; CE30603; CE36784; NM_066371; NM_066372; NM_171207; WBGene00001565; WP:CE29577; WP:CE30603; WP:CE36784 WormBase description: gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains; interacts with GEX-3 in yeast two-hybrid assays.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C31C9.1 Aff_C31C9.1 P W All gene names: tag-10; C31C9.1; 2N925; CE32597; CE32598; WBGene00006404; WP:CE32597; WP:CE32598 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, ViswanathanM et al 2005  S2 daf-16                                    
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C33D9.5 Aff_C33D9.5 P W All gene names: C33D9.5; 4J544; CE37808; WBGene00007899; WP:CE37808 WormBase description: Yeast RAD50 like protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

C33D9.8 Aff_C33D9.8 P W All gene names: C33D9.8; 4J548; CE03048; WBGene00007901; WP:CE03048
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C41D11.1 Aff_C41D11.1 P W All gene names: C41D11.1; 1F33; CE08658; WBGene00016561; WP:CE08658
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C44H4.2 Aff_C44H4.2 P W All gene names: sym-5; C44H4.2; CE08723; NM_078024; WBGene00006370; WP:CE08723; XP197 WormBase description: sym-5 encodes a predicted transmembrane protein that contains 13 contiguous leucine-rich repeats (LRRs) and that is similar to SYM-1, a secreted protein involved in muscle attachment; sym-5 activity appears to be required for embryogenesis and functionally overlaps with that of sym-1 and mec-8 in affecting muscle attachment; in addition, loss of sym-5 activity via RNA-mediated interference (RNAi) in a hypersensitized strain indicates that SYM-5 may also be required for locomotion, body morphology, and normal rates of postembryonic growth. WormBase CDS description: Drosophila chaoptin protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C44H4.3 Aff_C44H4.3 P W All gene names: sym-1; C44H4.3; CE08724; NM_078025; WBGene00006366; WP:CE08724; XP201 WormBase description: sym-1 encodes a protein containing 15 contiguous leucine-rich repeats (LRRs) that functionally overlaps with sym-5 and interacts with mec-8 with respect to embryonic viability and attachment of body muscle to the extracellular cuticle; expression begins at the time of embryonic elongation and SYM-1 is secreted from the apical hypodermal surface of the embryo WormBase CDS description: Drosophila chaoptin protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

C50F4.4 Aff_C50F4.4 P W All gene names: C50F4.4; 5K15b; CE33985; WBGene00008232; WP:CE33985
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C54F6.8 Aff_C54F6.8 P W All gene names: nhr-171; C54F6.8; 5H991; CE17603; WBGene00016926; WP:CE17603 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C55B7.3 Aff_C55B7.3 P W All gene names: C55B7.3; 1H77; CE09014; WBGene00016942; WP:CE09014 WormBase description: protein-tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

C55B7.4 Aff_C55B7.4 P W All gene names: acdh-1; dod-12; C55B7.4; C55B7.4b.1; C55B7.4b.2; C55B7.4b.3; C55B7.4b.4; 1H75; CE09015; CE32840; NM_059470; NM_181994; WBGene00016943; WP:CE09015; WP:CE32840 WormBase description: acyl-CoA dehydrogenase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Golden et al 2004, N2 differentially                                  
                                              expressed gen, Golden et al 2004, N2 vs daf-2 different                            
                                              genes at , McCarroll et al 2004  SFig1-4 conserved w/                              
                                              Drosoph, Reinke et al 2004, herm soma enriched genes,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F10E9.6 Aff_F10E9.6 P W All gene names: mig-10; F10E9.6; F10E9.6a.1; F10E9.6a.2; 3J395; CE00150; CE29261; CE36129; NM_066420; NM_066421; WBGene00003243; WP:CE00150; WP:CE29261; WP:CE36129 WormBase description: mig-10 encodes a protein containing a pleckstrin homology domain and a proline-rich region, and is similar to the SH2-domain containing adapter proteins Grb7 and Grb10 which are involved in receptor tyrosine kinase-mediated signal transduction; MIG-10 is likely required for signal transduction during cell migration, as it is required non-cell autonomously for excretory canal development and anterior-posterior migrations of the embryonic neurons ALM, CAN, and HSN; mig-10 mutations appear to interact genetically with mutations in all three C. elegans rac genes, ced-10, mig-2, and rac-2, suggesting partial redundancy during neuronal migration and excretory canal outgrowth; MIG-10 is expressed in many embryonic cells and in four cells in the adult head.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F11C1.6 Aff_F11C1.6 P W All gene names: nhr-25; F11C1.6; F11C1.6a.1; F11C1.6a.2; F11C1.6b.1; F11C1.6b.2; F11C1.6b.3; CE03191; CE35856; NM_077761; WBGene00003623; WP:CE03191; WP:CE35856; XN631 WormBase description: nhr-25 encodes a nuclear hormone receptor orthologous to Drosophila Ftz-F1; NHR-25 is required for embryogenesis, molting, vulval and gonadal development, and hypodermal expression of acn-1; nhr-25 is expressed in gonads and loaded into embryos as a maternal transcript; nhr-25 is zygotically expressed in progeny of the E cell, and then in hypodermis and gut; the role of NHR-25 in molting may be evolutionarily conserved between nematodes and arthopods.
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F11C3.2 Aff_F11C3.2 P W All gene names: cof-1; ofm-1; unc-122; F11C3.2; 1P467; CE20668; NM_061197; WBGene00006845; WP:CE20668 WormBase description: unc-122 encodes a predicted type II transmembrane protein with extracellular collagen-like domains and a highly conserved olfactomedin (OLF) domain that is found in a family of secreted proteins involved in formation and function of nervous systems; UNC-122 is required for proper locomotion and for normal morphology of the DVB motorneuron, and may regulate neuromuscular function by acting in an aminergic/peptidergic pathway parallel to cholinergic neurotransmission; although mosaic analysis indicates that UNC-122 activity is required in muscle cells, the precise expression and localization patterns of UNC-122 are not yet known.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Climbing, Wang                              
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F11F1.7 Aff_F11F1.7 P W All gene names: F11F1.7; 3O495; CE15807; WBGene00008719; WP:CE15807 WormBase description: Transthyretin-like family
F18E9.5 Aff_F18E9.5 P W All gene names: tag-279; F18E9.5; CE30957; CE30958; WBGene00017571; WP:CE30957; WP:CE30958; XJ193
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan                                                                           

F18F11.1 Aff_F18F11.1 P W All gene names: F18F11.1; 4B88; CE17684; WBGene00017574; WP:CE17684
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F21A3.2 Aff_F21A3.2 P W All gene names: F21A3.2; 5Q12; CE31909; WBGene00008992; WP:CE31909 WormBase description: acid phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F21A9.2 Aff_F21A9.2 P W All gene names: F21A9.2; 1E272; CE09522; WBGene00017651; WP:CE09522 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes                                                                

F32H2.6 Aff_F32H2.6 P W All gene names: phi-46; F32H2.6; 1J574; CE09881; WBGene00009343; WP:CE09881 WormBase description: fatty acid synthase (N-terminus)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F36H1.6 Aff_F36H1.6 P W All gene names: alh-3; F36H1.6; 4L789; CE05817; NM_069653; WBGene00000109; WP:CE05817 WormBase description: alh-3 encodes an aldehyde dehydrogenase predicted to be mitochondrial. WormBase CDS description: formyltetrahydrofolate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F39G3.5 Aff_F39G3.5 P W All gene names: F39G3.5; 5F201; CE10120; CE36933; WBGene00018210; WP:CE10120; WP:CE36933
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

F43G6.11 Aff_F43G6.4 P W All gene names: F43G6.11; 2M91; CE31698; CE31699; NM_171044; NM_171045; WBGene00009663; WP:CE31698; WP:CE31699
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F49E12.6 Aff_F49E12.6 P W All gene names: F49E12.6; 2I705; CE37018; WBGene00009899; WP:CE37018 WormBase description: The F49E12.6 gene encodes a protein with two E2F domains that may be involved in apoptosis. WormBase CDS description: RBB3 like protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig3 Rb complex                                 
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F52G3.1 Aff_F52G3.1 P W All gene names: F52G3.1; CE28439; WBGene00018710; WP:CE28439; XR585
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F54E7.7 Aff_F54E7.7 P W All gene names: rcn-1; F54E7.7; 3G772; CE31002; DSCR1L; NM_065822; SC; WBGene00004321; WP:CE31002 WormBase description: rcn-1 encodes a calcipressin, which binds and inhibits calcineurin; RCN-1's orthologs include yeast Rcn1p and human DSCR1 (OMIM:602917; overexpressed in Down syndrome and Alzheimer disease); rcn-1 is expressed in hypodermal seam cells, various neurons, vulval epithelial and muscle cells, marginal pharyngeal cells, and in the male tail; rcn-1 transcription is regulated by TAX-6, and RCN-1 binds TAX-6 protein if free Ca[2+] is present; RCN-1 overexpression, like calcineurin deficiency, causes defects in body size, cuticle thickness, fertility, growth rate, and serotonin-resistance in egg-laying.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

F58G1.4 Aff_F58G1.4 P W All gene names: F58G1.4; 2N223; CE17924; WBGene00010266; WP:CE17924
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C                               

H10E21.1 Aff_H10E21.1 P W All gene names: H10E21.1; 3A635; CE32456; WBGene00019182; WP:CE32456
K07C6.5 Aff_K07C6.5 P W All gene names: cyp-35A5; K07C6.5; 5E415; CE17176; NM_071691; WBGene00019473; WP:CE17176 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005 T1 xenobiotic                                
                                              induced P450                                                                       

R03E9.1 Aff_R03E9.1 P W All gene names: mdl-1; R03E9.1; CE04784; NM_076735; WBGene00003163; WP:CE04784; XH361 WormBase description: human Max-interacting bHLH-Zip protein
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

R11D1.11 Aff_R11D1.11 P W All gene names: dhs-21; R11D1.11; 5N212; CE39954; NM_073781; WBGene00000984; WP:CE39954 WormBase description: dhs-21 encodes a member of the short-chain dehydrogenases/reductases family (SDR) expressed in the intestine, hypodermis, uterus, and spermatheca. WormBase CDS description: Mouse adipocyte P27 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R11E3.2 Aff_R11E3.2 P W All gene names: R11E3.2; 4F535; CE19544; WBGene00020004; WP:CE19544 WormBase description: permease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

T01C8.1 Aff_T01C8.1 P W All gene names: aak-2; T01C8.1; T01C8.1c.1; T01C8.1c.2; CE07458; CE31222; CE31223; NM_078309; NM_078310; WBGene00020142; WP:CE07458; WP:CE31222; WP:CE31223; XR417 WormBase description: aak-2 encodes one of two C. elegans homologs of the catalytic alpha subunit of AMP-activated protein kinases (AMPKs); in C. elegans, aak-2 functions downstream of stressors and energy level signals, as well as daf-2-mediated insulin signaling, to positively regulate adult lifespan; in addition, genetic analysis with daf-16 mutants indicates that, in regulating lifespan, AAK-2 likely acts in parallel with DAF-16; aak-2 activity is also required for dauer formation of daf-2 mutant animals at high temperature, in a manner that does not appear to be dependent upon the AMP:ATP ratio; in the germline, aak-2 functions downstream of daf-2 and daf-7, and in parallel to par-4 and aak-1, to negatively regulate germline proliferation during dauer development; in vitro, AAK-2 exhibits AMP-enhanced kinase activity against a known AMPK substrate.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T05A7.3 Aff_T05A7.3 P W All gene names: T05A7.3; 2E967; CE04889; WBGene00020221; WP:CE04889
T08H4.3 Aff_T08H4.3 P W All gene names: ast-1; T08H4.3; 2E418; CE19576; WBGene00020368; WP:CE19576 WormBase description: ETS protein
T09B4.4 Aff_T09B4.4 P W All gene names: T09B4.4; 1G745; CE36196; WBGene00020378; WP:CE36196
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T21H8.1 Aff_T21H8.1 P W All gene names: CELIPRIN-BETA; T21H8.1; CE37412; WBGene00011904; WP:CE37412; XO484
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

T23G5.6 Aff_T23G5.6 P W All gene names: T23G5.6; 3K331; CE37794; WBGene00011964; WP:CE37794
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T28H10.3 Aff_T28H10.3 P W All gene names: T28H10.3; 5M993; CE14367; WBGene00012144; WP:CE14367 WormBase description: vacuolar processing enzyme like
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

W01C8.5 Aff_W01C8.5 P W All gene names: W01C8.5; CE26751; WBGene00020921; WP:CE26751; XG314
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

W02H5.8 Aff_W02H5_1932.C P W All gene names: W02H5.8; W02H5.A; W02H5_1932.A; 5D126; CE21240; WBGene00020962; WP:CE21240
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

W06H12.1 Aff_Y53H1A.A P W All gene names: ztf-6; W06H12.1; W06H12.1.1; W06H12.1.2; 1L803; CE25145; WBGene00012317; WP:CE25145
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

W10G6.2 Aff_W10G6.2 P W All gene names: sgk-1; tag-74; W10G6.2; W10G6.2a.1; W10G6.2a.2; CE39527; CE39528; NM_078246; WBGene00004789; WP:CE39527; WP:CE39528; XQ870 WormBase description: Protein kinase C terminal domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B                               

Y49F6B.1 Aff_Y49F6B_108.I P W All gene names: cyh-1; Y49F6B.1; Y49F6B.R; 2D797; CE36037; NM_062163; WBGene00021714; WP:CE36037
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y53G8B.1 Aff_Y53G8B_9248.A P W All gene names: Y53G8B.1; 3E219; CE25427; WBGene00021817; WP:CE25427
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan                                                                  

Y54G11B.1 Aff_Y54G11B.1 P W All gene names: Y54G11B.1; 2O747; CE16663; WBGene00013222; WP:CE16663
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

Y71D11A.3 Aff_Y71D11A.C P W All gene names: Y71D11A.3; 3C231; ACMSD; CE25548; CE32030; WBGene00022104; WP:CE25548; WP:CE32030
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Unkown,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

Y75B8A.29 Aff_Y75B8A.LL P W All gene names: Y75B8A.29; 3N421; CE23040; WBGene00013560; WP:CE23040
Y75B8A.4 Aff_Y75B8A.E P W All gene names: Y75B8A.4; Y75B8A.4.1; Y75B8A.4.2; 3N201; CE23016; WBGene00013541; WP:CE23016 WormBase description: ATPases associated with various cellular activities (AAA)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

ZC376.1 Aff_ZC376.1 P W All gene names: ZC376.1; 5O656; CE15193; WBGene00013873; WP:CE15193 WormBase description: carboxylesterase
ZK328.8 Aff_ZK328.6 P W All gene names: tbx-7; ZK328.8; 3H114; CE29639; NM_065912; WBGene00006544; WP:CE29639 WormBase description: tbx-7 encodes one of 21 C. elegans T-box transcription factors; in large-scale RNAi screens for early embryonic defects, loss of tbx-7 activity results in no obvious abnormalities; thus, the precise role of tbx-7 in C. elegans development and/or behavior is not yet known.
ZK930.3 Aff_ZK930.3 P W All gene names: ZK930.3; 2M188; CE37306; CE37948; WBGene00014153; WP:CE37306; WP:CE37948
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order