Gene list file name: | Baugh2003_classMDpd_PC32.txt |
---|---|
Type of gene identifier: | Affymetrix custom chip |
Description: | Baugh et al 2005, Supplymental Dataset, subclass MDpd_PC32 |
Organism: | Caenorhabditis elegans (nematode) |
Gene list type: | Experimental |
Gene name Source Gene ID Annotation Date Added by
AC7.2 Aff_AC7.2 P W All gene names: soc-2; sur-8; AC7.2; AC7.2a.1; AC7.2a.2; 4F892; CE25736; CE31275; NM_171332; WBGene00004929; WP:CE25736; WP:CE31275
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S4 Early genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
AFF_F45D11_39.C Aff_F45D11_39.C P W
AFF_F46F11.8 Aff_F46F11.8 P W
AFF_R144.3 Aff_R144.3 P W
AFF_Y38F2A_6126.E Aff_Y38F2A_6126.E P W
AFF_Y55B1B_119.E Aff_Y55B1B_119.E P W
B0001.2 Aff_B0001.2 P W All gene names: B0001.2; 4M912; CE36776; WBGene00007087; WP:CE36776
Member of lists (Publications lists):
Lund et al 2002 Fig3C Germline-intrinsic, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, herm soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated
B0244.8 Aff_B0244.8 P W All gene names: egg-1; B0244.8; 3G819; CE32094; WBGene00015083; WP:CE32094 WormBase description: LDL receptor
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
B0280.5 Aff_B0280.5 P W All gene names: B0280.5; 3I192; CE31868; WBGene00015102; WP:CE31868 WormBase description: B0280.5 encodes a protein with a chitin binding peritrophin-A domain that is required, in conjunction with CEJ-1, for early embryonic development; B0280.5 mRNA is expressed specifically in the adult hermaphrodite germ line, is a direct target of GLD-1, and has an RNAi phenotype consistent with the hypothesis that B0280.5 is an effector of GLD-1 in the germline.
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, GO categories, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S6 removed genes of contamination
B0334.5 Aff_B0334.5 P W All gene names: B0334.5; 2L789; CE30122; WBGene00007145; WP:CE30122 WormBase description: phytoene synthase precursor
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
B0361.5 Aff_B0361.5 P W All gene names: psd-1; B0361.5; 3I360; CE37076; CE37696; WBGene00015159; WP:CE37076; WP:CE37696 WormBase description: Phosphatidylserine decarboxylase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0
B0365.1 Aff_B0365.1 P W All gene names: B0365.1; 5N599; CE07719; WBGene00007150; WP:CE07719 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: ATP citrate lyase
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
B0414.8 Aff_B0414.8 P W All gene names: B0414.8; 1G380; CE30413; CE36910; WBGene00015176; WP:CE30413; WP:CE36910
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C01F1.2 Aff_C01F1.2 P W All gene names: C01F1.2; 2E591; CE06743; WBGene00015297; WP:CE06743 WormBase description: C01F1.2 is orthologous to the human gene SCO (CYTOCHROME OXIDASE DEFICIENT, YEAST) HOMOLOG 1 (SCO1; OMIM:603644), which when mutated leads to early-onset hepatic failure; the C01F1.2 protein is predicted to be mitochondrial with 68% accuracy.
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
C01G8.6 Aff_C01G8.6 P W All gene names: C01G8.6; 1F868; CE07807; WBGene00015313; WP:CE07807
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , ViswanathanM et al 2005 S2 sir-2.1 regulated
C04E6.11 Aff_C04E6.11 P W All gene names: C04E6.11; 5G396; CE36911; WBGene00015425; WP:CE36911
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, herm soma enriched genes, Wang et al 2003 S4 Early genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
C04F12.10 Aff_C04F12.10 P W All gene names: Ce-face-1; fce-1; C04F12.10; 1K288; CE19683; NM_060181; WBGene00001405; WP:CE19683 WormBase description: fce-1 encodes an ortholog of 'farnesylated-proteins converting enzyme 1' (FACE-1), and thus probably enables post-translational processing of proteins (such as LET-60/RAS) carrying a C-terminal CaaX motif; FCE-1 protein probably accounts for the EDTA-sensitive, tosylphenylalanylchloromethane-insensitive component of CaaX-proteolytic activity in membrane extracts from C. elegans, and FCE-1 can cleave a farnesylated peptide in vitro; the S. cerevisiae homolog of FCE-1 (Ste24p) cleaves the precursor of yeast a-factor mating pheromone after its farnesylated cysteine residue, and transgenic FCE-1 rescues a mating defect of mutant yeast lacking both the Ste24p and the Rce1p CaaX-proteases. WormBase CDS description: Zinc-binding metalloprotease domain
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S4 Climbing, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
C04F6.5 Aff_C04F6.5 P W All gene names: dhs-27; C04F6.5; CE37079; NM_076190; WBGene00000990; WP:CE37079; XE32 WormBase description: dhs-27 encodes a short-chain dehydrogenase predicted to be mitochondrial. WormBase CDS description: alcohol/ribitol dehydrogenase
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 daf-16 Resveratrol
C06A5.11 Aff_C06A5.3 P W All gene names: sir-2.4; C06A5.11; 1G567; CE27656; NM_059332; WBGene00004803; WP:CE27656
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
C07D8.6 Aff_C07D8.6 P W All gene names: C07D8.6; C07D8.6.1; C07D8.6.2; CE06776; WBGene00015565; WP:CE06776; XH961 WormBase description: aldehyde reductase
Member of lists (Publications lists):
Lund et al 2002 Fig3D Oocyte-en, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S4 Climbing, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
C10F3.1 Aff_C10F3.1 P W All gene names: C10F3.1; 5G479; CE08066; WBGene00015677; WP:CE08066
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C14B1.2 Aff_C14B1.2 P W All gene names: C14B1.2; 3E791; CE00899; WBGene00007573; WP:CE00899
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C14C10.4 Aff_C14C10.4 P W All gene names: C14C10.4; C14C10.4.1; C14C10.4.2; 5N74; CE05283; WBGene00007587; WP:CE05283
Member of lists (Publications lists):
Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
C14C11.2 Aff_C14C11.2 P W All gene names: C14C11.2; 5G143; CE06821; WBGene00015766; WP:CE06821
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C24H10.5 Aff_C24H10.5 P W All gene names: uvt-2; C24H10.5; CE29674; NM_076463; WBGene00006861; WP:CE29674; XF690 WormBase description: uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin; mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. WormBase CDS description: EF-hand calcium binding protein
C25A1.13 Aff_C25A1.13 P W All gene names: C25A1.13; 1K769; CE08379; WBGene00007712; WP:CE08379 WormBase description: NADH-ubiquinone oxidoreductase B8 subunit
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
C25G4.4 Aff_C25G4.4 P W All gene names: tag-347; C25G4.4; 4N218; CE05305; WBGene00007732; WP:CE05305 WormBase description: SAND domain
Member of lists (Publications lists):
Jiang et al 2001 Fig1 male-enriched TF, Reinke et al 2004, spermatogenesis enriched genes, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, GO categories, Reinke et al 2004, shared sperm, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated
C27F2.7 Aff_C27F2.7 P W All gene names: C27F2.7; 3G72; CE38942; WBGene00016169; WP:CE38942 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
C27H6.4 Aff_C27H6.4 P W All gene names: C27H6.4; 5K464; CE08428; CE31322; WBGene00007786; WP:CE08428; WP:CE31322
C30C11.2 Aff_C30C11.2 P W All gene names: rpn-3; C30C11.2; C30C11.2.1; C30C11.2.2; 3J537; CE00101; NM_066468; WBGene00004460; WP:CE00101 WormBase description: Diphenol oxidase A2
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated
C30G12.7 Aff_C30G12.7 P W All gene names: puf-8; C30G12.7; 2H586; CE37486; NM_063122; WBGene00004244; WP:CE37486
Member of lists (Publications lists):
Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S8 SAGE genes in the dauer exit
C42C1.11 Aff_C42C1.11 P W All gene names: AP-1; C42C1.11; C42C1.11a.1; C42C1.11a.2; C42C1.11c.1; C42C1.11c.2; 4N45; CE24840; CE33564; CE33565; WBGene00016589; WP:CE24840; WP:CE33564; WP:CE33565 WormBase description: peptidase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
C43E11.7 Aff_C43E11.7 P W All gene names: ndx-7; C43E11.7; 1E808; CE30504; NM_058935; WBGene00003584; WP:CE30504 WormBase description: ndx-7 encodes a NUDIX hydrolase; by sequence comparison, NDX-7 is predicted to function as a pyrophosphatase, and is most closely related to the mouse RP2 protein that has unknown substrate specificity but is regulated transcriptionally by the presence of androgens; in C. elegans, loss of ndx-7 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, consistent with the proposed nonessential roles for Nudix proteins in eliminating potentially toxic nucleotide metabolites from cells and modulating levels of metabolic intermediates by shuttling them into alternative biochemical pathways.
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
C44B9.3 Aff_C44B9.3 P W All gene names: C44B9.3; 3L966; CE05405; WBGene00008080; WP:CE05405
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C44B9.5 Aff_C44B9.5 P W All gene names: C44B9.5; 3L989; CE37755; WBGene00008082; WP:CE37755 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
C46F11.3 Aff_C46F11.3 P W All gene names: C46F11.3; 3E738; CE08774; WBGene00008118; WP:CE08774
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
C48B4.6 Aff_C48B4.6 P W All gene names: C48B4.6; 3K646; CE00482; WBGene00008169; WP:CE00482
Member of lists (Publications lists):
Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset
C50F7.4 Aff_C50F7.4 P W All gene names: C50F7.4; 4I495; CE04242; SCB2; WBGene00016844; WP:CE04242 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: succinyl-CoA synthetase beta chain
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
C56C10.10 Aff_C56C10.10 P W All gene names: C56C10.10; 2G884; CE02564; WBGene00016966; WP:CE02564 WormBase description: TPR domain
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
CD4.6 Aff_CD4.6 P W All gene names: pas-6; CD4.6; CD4.6.1; CD4.6.2; 5G64; CE16954; NM_072071; WBGene00003927; WP:CE16954 WormBase description: pas-6 encodes a type 1 alpha subunit of the 26S proteasome's 20S protease core particle (CP); PAS-6 is required for embryonic, larval, and germline development and by homology, is predicted to comprise the outer rings of the proteasome and to play a role in selective degradation of ubiquitinated proteins during development; in vitro, PAS-6 interacts with BRP-1, a glutamine/asparagine (Q/N)-rich domain-containing protein conserved amongst nematodes, and with other members of the proteasome. WormBase CDS description: protease
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated
D1007.5 Aff_D1007.5 P W All gene names: D1007.5; D1007.5a.1; D1007.5a.2; D1007.5b.1; D1007.5b.2; 1F150; CE29034; CE33577; WBGene00017003; WP:CE29034; WP:CE33577
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
D2023.5 Aff_D2023.5 P W All gene names: D2023.5; 5M306; CE09075; WBGene00008409; WP:CE09075 WormBase description: thiosulphate sulphurtransferase
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
D2030.8 Aff_D2030.8 P W All gene names: D2030.8; 1I169; CE28545; WBGene00008418; WP:CE28545
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
D2096.4 Aff_D2096.4 P W All gene names: sqv-1; D2096.4; D2096.4.1; D2096.4.2; 4J127; CE04302; NM_069017; WBGene00005019; WP:CE04302 WormBase description: sqv-1 encodes a UDP-glucuronic acid decarboxylase, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-1 is coexpressed with the nucleotide-sugar transporter homolog SQV-7 in in the vulva and in oocytes; SQV-1 colocalizes with SQV-5 and SQV-7 to punctate foci (probably the Golgi apparatus) in the cytoplasm of the vulva, the uterus and oocytes, within which SQV-1 may act to promote the biosynthesis of chondroitin glycosaminoglycans; the common requirement for SQV-1 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, McElwee et al 2003 T1 targets of daf-16, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
E02H1.2 Aff_E02H1.2 P W All gene names: E02H1.2; 2J878; CE01537; WBGene00008456; WP:CE01537 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: GTP binding protein
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
F09E5.3 Aff_F09E5.3 P W All gene names: F09E5.3; F09E5.3.1; F09E5.3.2; 2F665; CE02610; WBGene00017283; WP:CE02610 WormBase description: Deoxyribose-phosphate aldolase
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
F13C5.1 Aff_F13C5.1 P W All gene names: F13C5.1; CE19383; WBGene00017422; WP:CE19383; XB223
Member of lists (Publications lists):
Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0
F15B10.1 Aff_F15B10.1 P W All gene names: F15B10.1; 4H370; CE16987; CE39241; WBGene00017480; WP:CE16987; WP:CE39241 WormBase description: The F15B10.1 gene encodes an ortholog of the Kluyveromyces lactis UDP-N-acetylglucosamine (UPD-GlcNAc) transporter; when expressed in human cells deficient for GDP-fucose transport into the Golgi, F15B10.1 is able to weakly restore such transport (with ~10% efficiency).
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 sir-2.1 regulated
F16D3.4 Aff_F16D3.4 P W All gene names: F16D3.4; 1I940; CE09437; WBGene00008887; WP:CE09437 WormBase description: F16D3.4 encodes an ortholog of human TUBULIN-SPECIFIC CHAPERONE D (TBCD; OMIM:604649), also known as tubulin-folding cofactor D; F16D3.4 may be a ligand and effector of the ARL2 ortholog EVL-20.
Member of lists (Publications lists):
Lund et al 2002 Fig3D Oocyte-en, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F16H11.3 Aff_F16H11.3 P W All gene names: F16H11.3; CE04398; NM_076394; WBGene00017532; WP:CE04398; XF264
Member of lists (Publications lists):
Lund et al 2002 Fig3C Germline-intrinsic, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F17A9.2 Aff_F17A9.2 P W All gene names: F17A9.2; 5G593; CE19798; WBGene00017534; WP:CE19798
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
F20D1.3 Aff_F20D1.3 P W All gene names: F20D1.3; F20D1.3.1; F20D1.3.2; CE31486; WBGene00008975; WP:CE31486; XP595
F21F3.4 Aff_F21F3.4 P W All gene names: F21F3.4; 1F465; CE09534; WBGene00017674; WP:CE09534
Member of lists (Publications lists):
Lund et al 2002 Fig3C Germline-intrinsic, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F25H2.5 Aff_F25H2.5 P W All gene names: F25H2.5; F25H2.5.1; F25H2.5.2; F25H2.5.3; 1L130; CE09650; WBGene00009119; WP:CE09650 WormBase description: nucleoside diphosphate kinase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
F26H9.4 Aff_F26H9.4 P W All gene names: F26H9.4; 1J882; CE09709; WBGene00009176; WP:CE09709 WormBase description: Yeast hypothetical protein YG15 like
Member of lists (Publications lists):
Lund et al 2002 Fig3C Germline-intrinsic, McCarroll et al 2004 SFig5 conserved w/ yeast, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F29C12.4 Aff_F29C12.4 P W All gene names: F29C12.4; 2N411; CE19822; WBGene00009246; WP:CE19822 WormBase description: Elongation factor Tu family (contains ATP/GTP binding P-loop), Elongation factor G C-terminus
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Romagnolo et al 2002 Fig3b Protein Synthesis, ViswanathanM et al 2005 S2 sir-2.1 regulated
F32D1.6 Aff_F32D1.6 P W All gene names: F32D1.6; 5E852; CE09870; WBGene00017985; WP:CE09870
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F35C11.5 Aff_F35C11.5 P W All gene names: F35C11.5; 2I545; CE03285; WBGene00009404; WP:CE03285 WormBase description: phospholipase A2
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class2 shorten lifespan, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated
F38E1.7 Aff_F38E1.7 P W All gene names: mom-2; F38E1.7; 5I837; CE17806; NM_072753; WBGene00003395; WP:CE17806 WormBase description: mom-2 encodes a member of the Wnt family of secreted signaling glycoproteins that is required for induction of endodermal (gut) tissue in the 4-cell stage embryo; MOM-2, required in the inducing blastomere (P2) at the 4-cell stage, may be the ligand for MOM-5, a Frizzled homolog, thought to act in the receiving blastomere (EMS); MOM-2 genetically interacts in the same pathway as KIN-19, but parallel to APR-1; MOM-2 also may be a ligand for LIN-18, a Ryk homolog. WormBase CDS description: WNT family protein
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F43D2.2 Aff_F43D2.2 P W All gene names: F43D2.2; 5P112; CE10336; WBGene00009651; WP:CE10336
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
F44G4.3 Aff_F44G4.3 P W All gene names: F44G4.3; 2J288; CE02230; WBGene00009713; WP:CE02230
F46E10.10 Aff_F46E10.D P W All gene names: F46E10.10; F46E10.10b.1; F46E10.10b.2; F46E10.10c.1; F46E10.10c.2; F46E10.D; F46E10.I; 5G996; CE20820; CE33096; CE33097; WBGene00018491; WP:CE20820; WP:CE33096; WP:CE33097 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
Member of lists (Publications lists):
Link et al 2003 T2 Abeta repressed, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
F46F11.2 Aff_F46F11.2 P W All gene names: cey-2; F46F11.2; F46F11.2.1; F46F11.2.2; 1G189; CE10598; NM_059244; WBGene00000473; WP:CE10598 WormBase description: cey-2 encodes a cold-shock/Y-box domain-containing protein; by homology, CEY-2 is predicted to function as either an RNA-binding protein involved in translation or RNA processing, or a DNA-binding protein involved in transcriptional regulation; cey-2 mRNA is expressed maternally in the early embryo, in a pattern characteristic of class II maternal RNAs, which are initially detected throughout the embryo but restricted to the P, or germline, lineage as cell division progresses; as loss of cey-2 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of cey-2 in C. elegans development and/or behavior is not yet known.
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated
F48C1.6 Aff_F48C1.6 P W All gene names: F48C1.6; 1F886; CE10742; WBGene00018599; WP:CE10742
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S4 Climbing, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
F52C6.8 Aff_F52C6.8 P W All gene names: bath-4; F52C6.8; 2C172; CE10816; WBGene00018665; WP:CE10816
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated
F54B3.3 Aff_F54B3.3 P W All gene names: F54B3.3; F54B3.3.1; F54B3.3.2; F54B3.3.3; 2K539; CE35878; WBGene00010015; WP:CE35878 WormBase description: ATPases associated with various cellular activities (AAA)
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, herm soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
F54C8.2 Aff_F54C8.2 P W All gene names: F54C8.2; 3K519; CE00188; WBGene00010036; WP:CE00188 WormBase description: Histone H3 similarity
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, Reinke et al 2004, IVb male soma enriched genes
F54C9.8 Aff_F54C9.8 P W All gene names: puf-5; F54C9.8; 2I867; CE02258; NM_063413; WBGene00004241; WP:CE02258 WormBase description: Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (6 domains)
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
F54E12.2 Aff_F54E12.2 P W All gene names: F54E12.2; F54E12.2.1; F54E12.2.2; 4M98; CE11083; WBGene00010061; WP:CE11083 WormBase description: helicase
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
F55A12.2 Aff_F55A12.2 P W All gene names: F55A12.2; F55A12.2d.1; F55A12.2d.2; 1F933; CE29396; CE30540; CE34317; CE34318; WBGene00018863; WP:CE29396; WP:CE30540; WP:CE34317; WP:CE34318
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
F56A4.12 Aff_F56A4.A P W All gene names: F56A4.12; 5C954; CE25010; WBGene00018920; WP:CE25010
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
F56B3.8 Aff_F56B3.8 P W All gene names: F56B3.8; 4B529; CE34320; WBGene00018932; WP:CE34320
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S4 Early genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
F56G4.5 Aff_Y53H1C.A P W All gene names: F56G4.5; F56G4.5.1; F56G4.5.2; 1L979; CE23786; WBGene00010160; WP:CE23786 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Thioredoxins
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
F57B10.3 Aff_F57B10.3 P W All gene names: F57B10.3; F57B10.3b.1; F57B10.3b.2; F57B10.3b.3; F57B10.3b.4; 1H147; CE11302; CE33113; WBGene00019001; WP:CE11302; WP:CE33113 WormBase description: F57B10.3 encodes an experimentally confirmed cofactor-independent phosphoglycerate mutase that is essential for embryonic and larval viability, and for normal body morphology; paradoxically, F57B10.3 is also required for normally short livespan (in mass RNAi screens for Age phenotypes); F57B10.3 is expressed widely in larvae and adults, with highest expression in the nerve ring, intestine and body wall muscles; F57B10.3 probably functions in glycolytic and gluconeogenic metabolism.
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S4 Climbing, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
F57C2.2 Aff_F57C2.2 P W All gene names: F57C2.2; 2O804; CE16153; WBGene00010194; WP:CE16153 WormBase description: BTB (also known as BR-C/Ttk) domain.
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, ViswanathanM et al 2005 S2 sir-2.1 regulated
F58B3.5 Aff_F58B3.5 P W All gene names: mrs-1; F58B3.5; 4M398; CE06007; NM_069795; WBGene00003415; WP:CE06007 WormBase description: mrs-1 encodes a predicted cytoplasmic methionyl-tRNA synthetase (MetRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of methionine to its cognate tRNA and is thus required for protein biosynthesis; MRS-1 is essential for embryogenesis and required also for a normal rate of postembryonic growth. WormBase CDS description: methionyl-tRNA synthetase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 daf-16 Resveratrol
F59B2.7 Aff_F59B2.7 P W All gene names: rab-6.1; F59B2.7; 3K94; CE00234; NM_066592; WBGene00004269; WP:CE00234 WormBase description: Rab6 (ras protein)
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated
F59F4.4 Aff_F59F4.4 P W All gene names: acl-1; F59F4.4; CE11552; NM_078205; WBGene00010339; WP:CE11552; XQ469 WormBase description: 1-acyl-SN-glycerol-3-phosphate acyltransferase
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched
H02I12.1 Aff_H02I12.1 P W All gene names: H02I12.1; 4M141; CE37527; WBGene00010351; WP:CE37527
Member of lists (Publications lists):
Lund et al 2002 Fig3D Oocyte-en, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
H02I12.5 Aff_H02I12.5 P W All gene names: H02I12.5; 4M166; CE16162; WBGene00010353; WP:CE16162
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
H11L12.1 Aff_H11L12.1 P W All gene names: H11L12.1; CE20957; WBGene00019189; WP:CE20957; XS322
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
K01C8.3 Aff_K01C8.3 P W All gene names: adc-1; tdc-1; K01C8.3; 2I563; CE21011; CE28344; NM_063342; NM_063343; WBGene00006562; WP:CE21011; WP:CE28344 WormBase description: aromatic-L-amino-acid decarboxylase
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, IVb male soma enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
K01C8.6 Aff_K01C8.6 P W All gene names: K01C8.6; 2I566; CE02267; WBGene00010458; WP:CE02267 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
K01C8.7 Aff_K01C8.7 P W All gene names: K01C8.7; 2I565; CE02268; WBGene00010459; WP:CE02268 WormBase description: Mitochondrial carrier proteins
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
K01D12.12 Aff_K01D12.12 P W All gene names: cdr-6; K01D12.12; 5M892; CE06051; NM_073712; WBGene00010471; WP:CE06051 WormBase description: glutathione S-transferase
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
K02D10.1 Aff_K02D10.1 P W All gene names: K02D10.1; K02D10.1b.1; K02D10.1b.2; 3J865; CE17151; CE29423; WBGene00019301; WP:CE17151; WP:CE29423 WormBase description: 4-NITROPHENYLPHOSPHATASE
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
K04F10.6 Aff_K04F10.6 P W All gene names: rde-3; K04F10.6; 1G930; CE11740; CE33137; NM_059433; NM_182080; WBGene00004325; WBGene00019398; WP:CE11740; WP:CE33137 WormBase description: rde-3 encodes a nucleotidyltransferase that is a member of the polymerase beta nucleotidyltransferase superfamily that includes poly(A) polymerases, 2-5 oligoadenylate synthetases, C. elegans GLD-2, and S. cerevisiae Trf4p; by homology, RDE-3 is predicted to function as a poly(A) polymerase whose activity is required for meiotic chromosome segregation, negative regulation of DNA transposition, non-transgene-induced RNAi (i.e. RNAi via feeding is affected, whereas RNAi via expression of sense and antisense RNA from a transgene is not), fertility, and viability; analysis of siRNA levels in rde-3 mutant animals indicates that during RNAi, RDE-3 activity is required at a point upstream of siRNA accumulation; neither the precise mechanistic role of RDE-3 in posttranscriptional silencing, nor the RDE-3 expression pattern, is yet known.
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
K04G2.6 Aff_K04G2.6 P W All gene names: K04G2.6; K04G2.6.1; K04G2.6.2; 1I619; CE06100; WBGene00010565; WP:CE06100
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
K07C11.9 Aff_K07C11.9 P W All gene names: cogc-6; K07C11.9; 5I700; CE07351; WBGene00019481; WP:CE07351
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
K07H8.3 Aff_K07H8.3 P W All gene names: K07H8.3; 4J55; CE18023; WBGene00019505; WP:CE18023
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
K08F4.3 Aff_K08F4.3 P W All gene names: K08F4.3; 4K895; CE06151; WBGene00010678; WP:CE06151 WormBase description: translocon-associated protein
Member of lists (Publications lists):
Lund et al 2002 Fig3C Germline-intrinsic, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster E, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated
K08H2.3 Aff_K08H2.3 P W All gene names: K08H2.3; CE06161; WBGene00010690; WP:CE06161; XN855
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
R01H2.3 Aff_R01H2.3 P W All gene names: egg-2; R01H2.3; 3I146; CE00802; WBGene00019811; WP:CE00802
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
R03D7.7 Aff_R03D7.7 P W All gene names: nos-1; R03D7.7; 2L242; CE01614; NM_063957; WBGene00003783; WP:CE01614 WormBase description: nos-1 encodes an putative RNA-binding protein that contains a zinc-binding motif homologous to that of Drosophila Nanos, a posterior-group protein required for embryonic patterning and primordial germ cell development; in C. elegans, NOS-1 is required redundantly with NOS-2, a second Nanos homolog, for maintenance of germ cell viability during postembryonic development and for preventing primordial germ cells from dividing in the absence of food; nos-1 mRNA is expressed dynamically in the embryo, with early expression seen throughout the embryo and later expression restricted solely to germline blastomeres; nos-1 mRNA becomes undetectable after the 200-cell stage, but reappears later at the 550-cell stage; NOS-1 protein is not detectable in germline blastomeres until the 550-cell stage, suggesting that NOS-1 might actually function zygotically in germline specification. WormBase CDS description: nanos protein
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
R05F9.6 Aff_R05F9.6 P W All gene names: R05F9.6; 2F181; CE04809; WBGene00019890; WP:CE04809 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: phosphoglucomutase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched
R06C7.4 Aff_R06C7.4 P W All gene names: R06C7.4; 1H821; CE06247; WBGene00011063; WP:CE06247
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
R06F6.9 Aff_R06F6.9 P W All gene names: acbp-2; ech-4; R06F6.9; 2L111; CE01625; NM_063929; WBGene00001153; WP:CE01625 WormBase description: enoyl CoA hydratase/isomerase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Romagnolo et al 2002 Fig3b Metabolism, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 LateList, Wang et al 2003 S4 genes pass two-wayANOVA P0
R09B3.4 Aff_R09B3.4 P W All gene names: ubc-12; R09B3.4; 1M503; CE16309; NM_060623; WBGene00006707; WP:CE16309 WormBase description: The ubc-12 gene encodes a ubiquitin-conjugating enzyme whose substrate is NED-8, and which is required for both embryogenesis and terminal hypodermal differentiation; ubc-12(RNAi) mutants either arrest during embryonic development or show pleotropic defects (e.g., vulval eversion during the L4 stage), as well as defective alae. WormBase CDS description: Ubiquitin-conjugating enzymes
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
R107.7 Aff_R107.7 P W All gene names: gst-1; R107.7; R107.7.1; R107.7.2; 3K149; CE00302; NM_066605; WBGene00001749; WP:CE00302 WormBase description: gst-1 encodes a putative glutathione S-transferase with highest similarity to the pi class. WormBase CDS description: glutathione S-transferase
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S6 removed genes of contamination
R10E4.5 Aff_R10E4.5 P W All gene names: R10E4.5; 3F380; CE03559; WBGene00011201; WP:CE03559 WormBase description: endonuclease
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated
R12E2.10 Aff_R12E2.10 P W All gene names: R12E2.10; 1E738; CE18142; WBGene00020035; WP:CE18142 WormBase description: protein-tyrosine phosphatase
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
R166.3 Aff_R166.3 P W All gene names: R166.3; 2K828; CE03582; WBGene00011303; WP:CE03582 WormBase description: The R166.3 gene encodes an unfamiliar protein, with homologs in yeast and archaea, that is orthologous to the human gene ALPORT SYNDROME, MENTAL RETARDATION, MIDFACE HYPOPLASIA, AND ELLIPTOCYTOSIS CHROMOSOMAL REGION GENE 1 (AMMECR1; OMIM:300195); AMMECR1, when mutated, may be at least partially responsible for mental retardation, midface hypoplasia, or elliptocytosis.
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
R186.3 Aff_R186.3 P W All gene names: R186.3; 5N446; CE12874; WBGene00011306; WP:CE12874 WormBase description: signal recognition particle receptor beta subunit like
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
T01G5.7 Aff_T01G5.7 P W All gene names: T01G5.7; 5P593; CE12986; WBGene00011342; WP:CE12986 WormBase description: Zinc finger, C3HC4 type (RING finger)
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
T02G5.8 Aff_T02G5.8 P W All gene names: kat-1; T02G5.8; 2H367; CE29990; NM_063054; WBGene00002183; WP:CE29990 WormBase description: kat-1 encodes a homolog of the human gene ACAT1, which when mutated leads to alpha-methylacetoaceticaciduria (OMIM:203750). WormBase CDS description: acetoacetyl-C0A thiolase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
T03F1.3 Aff_T03F1.3 P W All gene names: T03F1.3; 1E435; CE13100; WBGene00020185; WP:CE13100 WormBase description: T03F1.3 is orthologous to the human gene PHOSPHOGLYCERETE KINASE 1 (PGK1; OMIM:311800), which when mutated leads to hemolytic anemia and neurologic disturbances. WormBase CDS description: phosphoglycerate kinase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Climbing, Wang et al 2003 S4 genes pass two-wayANOVA P0
T03F1.7 Aff_T03F1.7 P W All gene names: T03F1.7; 1E420; CE30685; WBGene00020189; WP:CE30685
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
T04A8.11 Aff_T04A8.11 P W All gene names: T04A8.11; 3F793; CE01066; WBGene00011412; WP:CE01066 WormBase description: 50S ribosomal protein L16
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
T05A6.1 Aff_T05A6.1 P W All gene names: cki-1; T05A6.1; 2I101; CE03628; NM_063240; WBGene00000516; WP:CE03628 WormBase description: cki-1 encodes a homolog of the mammalian cyclin-dependent kinase inhibitor p27/KIP1 that is required for the arrest of cell division in larval blast lineages, dauer larvae and starved L1 larvae; excess CKI-1 expression prematurely stops cell division while cki-1(RNAi) induces extra cell divisions, indicating that CKI-1 quantitatively regulates the amount of mitosis in postembryonic worms.
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order
T05G11.1 Aff_T05G11.1 P W All gene names: T05G11.1; 5Q408; CE18930; WBGene00011505; WP:CE18930 WormBase description: Zinc finger, C2H2 (2 domains)
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
T06E8.1 Aff_T06E8.1 P W All gene names: acl-2; T06E8.1; 5K510; CE06378; NM_073177; WBGene00011543; WP:CE06378 WormBase description: T06E8.1 is orthologous to the human gene 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 2 (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE, BETA) (AGPAT2; OMIM:603100), which when mutated leads to disease; T06E8.1 protein is predicted to be mitochondrial. WormBase CDS description: 1-acyl-SN-glycerol-3-phophate acyltransferase
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
T06H11.4 Aff_T06H11.4 P W All gene names: moc-1; T06H11.4; CE31596; NM_077299; WBGene00003384; WP:CE31596; XK756 WormBase description: moc-1 encodes an ortholog of human GEPHYRIN (GPHN; OMIM:603930), which when mutated leads to molybdenum cofactor (MoCo) deficiency; MOC-1 is also paralogous to LIN-46. WormBase CDS description: gephyrin
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 sir-2.1 regulated
T11F8.3 Aff_T11F8.3 P W All gene names: rme-2; T11F8.3; 4G237; CE22368; NM_068414; WBGene00004374; WP:CE22368 WormBase description: LDL-like receptor
Member of lists (Publications lists):
Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, herm soma enriched genes, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
T12A2.8 Aff_T12A2.8 P W All gene names: T12A2.8; T12A2.8.1; T12A2.8.2; 3H336; CE01401; WBGene00020442; WP:CE01401 WormBase description: DNA repair protein
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
T12D8.8 Aff_T12D8.8 P W All gene names: T12D8.8; T12D8.8.1; T12D8.8.2; T12D8.8.3; 3O704; CE16405; WBGene00011735; WP:CE16405 WormBase description: TPR Domain (2 domains)
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
T12G3.4 Aff_T12G3.4 P W All gene names: T12G3.4; 4M813; CE06440; WBGene00011739; WP:CE06440 WormBase description: strictosidine synthase like
Member of lists (Publications lists):
ViswanathanM et al 2005 S2 sir-2.1 regulated
T17E9.2 Aff_T17E9.2 P W All gene names: T17E9.2; T17E9.2c.1; T17E9.2c.2; 3H204; CE01406; CE28669; CE31611; WBGene00020549; WP:CE01406; WP:CE28669; WP:CE31611
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S4 Early genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
T20F7.1 Aff_T20F7.1 P W All gene names: T20F7.1; CE33698; WBGene00020630; WP:CE33698; XR491
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen
T21B10.1 Aff_T21B10.1 P W All gene names: T21B10.1; 2J221; CE03683; WBGene00011883; WP:CE03683
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated
T21C9.2 Aff_T21C9.2 P W All gene names: vps-54; T21C9.2; 5L46; CE31365; NM_073310; WBGene00006934; WP:CE31365 WormBase description: The vps-54 gene encodes an ortholog of VPS54 in S. cerevisiae, a protein involved in vacuolar trafficking. WormBase CDS description: Zinc finger, C2H2 type
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated
T23B12.2 Aff_T23B12.2 P W All gene names: T23B12.2; 5I949; CE14028; WBGene00020717; WP:CE14028 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: ribosomal protein
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
T24D1.3 Aff_T24D1.3 P W All gene names: T24D1.3; 1K536; CE14166; WBGene00011986; WP:CE14166
Member of lists (Publications lists):
Golden et al 2004, N2 vs daf-2 different genes at , Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
T25D3.2 Aff_T25D3.2 P W All gene names: T25D3.2; 2A446; CE19599; WBGene00020796; WP:CE19599
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt male enriched gen, Romagnolo et al 2002 Fig3b others, ViswanathanM et al 2005 S2 sir-2.1 regulated
T27E9.4 Aff_T27E9.4 P W All gene names: kel-3; T27E9.4; T27E9.4a.1; T27E9.4a.2; T27E9.4a.3; 3O559; CE29824; CE29825; NM_067383; NM_067384; WBGene00002185; WP:CE29824; WP:CE29825 WormBase description: ring canal protein like
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
W01A11.2 Aff_W01A11.2 P W All gene names: W01A11.2; 5G979; CE14392; WBGene00020910; WP:CE14392
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
W05F2.3 Aff_W05F2.3 P W All gene names: W05F2.3; 1D936; CE14616; WBGene00021035; WP:CE14616
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Jones et al 2001 T3 20 most abundant Mixed-stage, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
W08F4.3 Aff_W08F4.3 P W All gene names: W08F4.3; W08F4.3.1; W08F4.3.2; 2A871; CE14716; WBGene00021093; WP:CE14716
Member of lists (Publications lists):
Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated
W09B7.2 Aff_W09B7.B P W All gene names: W09B7.2; W09B7.B; 5J305; WBGene00021107
Y105E8B.5 Aff_Y105E8A.K P W All gene names: Y105E8B.5; 1P253; CE24099; WBGene00013690; WP:CE24099 WormBase description: The Y105E8B.
Y106G6H.14 Aff_Y106G6H.14 P W All gene names: Y106G6H.14; 1L48; CE24111; WBGene00013724; WP:CE24111 WormBase description: Src homology domain 3 ; Ank repeat
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y17G9B.9 Aff_Y17G9B.A P W All gene names: Y17G9B.9; 4F524; CE24188; WBGene00021206; WP:CE24188
Member of lists (Publications lists):
Jones et al 2001 Non dauer genes P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y24D9A.8 Aff_Y24D9A_29.F P W All gene names: Y24D9A.8; Y24D9A.8a.1; Y24D9A.8a.2; Y24D9A.8a.3; Y24D9A.8b.1; Y24D9A.8b.2; 4F153; CE28974; CE30402; WBGene00021286; WP:CE28974; WP:CE30402 WormBase description: Y24D9A.8 is orthologous to the human gene TRANSALDOLASE 1 (TALDO1; OMIM:602063), which when mutated leads to disease.
Y39E4B.5 Aff_Y39E4B.L P W All gene names: Y39E4B.5; Y39E4B.L; 3O261; CE21717; WBGene00012716; WP:CE21717
Member of lists (Publications lists):
Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y40B10A.1 Aff_Y40B10A_106.C P W All gene names: lbp-9; Y40B10A.1; Y40B10A.1b.1; Y40B10A.1b.2; 5C547; CE26077; CE39188; NM_071161; WBGene00021486; WP:CE26077; WP:CE39188
Member of lists (Publications lists):
Reinke et al 2004, herm soma enriched genes
Y45F10A.2 Aff_Y45F10A.2 P W All gene names: puf-3; Y45F10A.2; Y45F10A.2.1; Y45F10A.2.2; 4O276; CE18393; NM_070205; WBGene00004239; WP:CE18393 WormBase description: The puf-3 gene encodes a predicted RNA binding protein that is a member of the conserved PUF (Pumilio and FBF) family of RNA binding proteins; PUF-3 is expressed in the ovary and is required for multiple aspects of early embryogenesis including proper cell cycle timing, spindle positioning, and formation of the polar bodies and pronuclei. WormBase CDS description: Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain)
Member of lists (Publications lists):
Murphy et al 2003 Fig2 Class2 shorten lifespan, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S6 removed genes of contamination
Y46H3A.7 Aff_Y46H3A.H P W All gene names: Y46H3A.7; CE38646; WBGene00044344; WP:CE38646
Y47G6A.20 Aff_Y47G6A_245.F P W All gene names: rnp-6; Y47G6A.20; 1E108; CE24365; CE24366; CE31375; NM_058775; NM_058776; NM_170843; WBGene00004389; WP:CE24365; WP:CE24366; WP:CE31375 WormBase description: rnp-6 encodes an ortholog of HALF-PINT in D. melanogaster and FBP Interacting Repressor (FIR)/PUF60 in mammals, predicted to be involved in mRNA splicing regulation, mRNA localization, or transcriptional regulation via TFIIH.
Y48B6A.13 Aff_Y48B6A.L P W All gene names: Y48B6A.13; Y48B6A.13b.1; Y48B6A.13b.2; 2O512; CE22128; CE22129; WBGene00012984; WP:CE22128; WP:CE22129
Y50D7A.9 Aff_Y50D7_165.D P W All gene names: Y50D7A.9; 3A905; CE28994; WBGene00021757; WP:CE28994
Member of lists (Publications lists):
Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
Y52B11A.2 Aff_Y52B11A.2 P W All gene names: Y52B11A.2; 1L558; CE20291; CE36243; WBGene00013122; WP:CE20291; WP:CE36243 WormBase description: Uncharacterized protein family UPF0029
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, GO categories
Y53C12B.1 Aff_Y53C12B.1 P W All gene names: Y53C12B.1; 2K34; CE14894; WBGene00013143; WP:CE14894 WormBase description: WD domain, G-beta repeats (4 domains)
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA
Y54E10A.7 Aff_Y54E10A_159.B P W All gene names: Y54E10A.7; Y54E10A_159.B; 1D731; CE38572; WBGene00021829; WP:CE38572
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
Y54G2A.36 Aff_Y94H6A_148.S P W All gene names: Y54G2A.36; 4D661; CE34417; WBGene00021898; WP:CE34417
Y57A10A.30 Aff_Y57A10A.JJ P W All gene names: ife-5; Y57A10A.30; Y57A10A.30b.1; Y57A10A.30b.2; 2M573; CE22608; CE25509; NM_064207; WBGene00002063; WP:CE22608; WP:CE25509 WormBase description: ife-5 encodes a member of the Initiation Factor 4E (eIF4E) family; it is expressed in the germ line.
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, Fig2b shared gemlines, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , ViswanathanM et al 2005 S2 sir-2.1 regulated
Y66A7A.2 Aff_Y66A7A.2 P W All gene names: Y66A7A.2; 3M576; CE22751; WBGene00013422; WP:CE22751
Y71F9AL.8 Aff_Y71F9A_294.E P W All gene names: Y71F9AL.8; 1D447; CE25560; WBGene00022113; WP:CE25560
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y71F9AM.4 Aff_Y71F9A_269.A P W All gene names: cogc-3; mig-29; Y71F9AM.4; 1D513; CE33242; CE37070; WBGene00022121; WP:CE33242; WP:CE37070
Member of lists (Publications lists):
Wang et al 2003 S4 Early genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0
Y75B12B.2 Aff_Y75B12B.2 P W All gene names: cyn-7; cyp-7; Y75B12B.2; Y75B12B.2.1; Y75B12B.2.2; Y75B12B.2.3; 5P666; CE20371; NM_074348; WBGene00000883; WP:CE20371 WormBase description: cyp-7 encodes a cyclophilin A isoform; while not tested peptidyl-prolyl isomerase activity in vitro, it is very similar to CYP-3 and closely resembles the prototypical CypA, and is therefore likely to be a member of the cytosolic CsA-binding cyclophilin subfamily; CYP-7 was required for embryonic viability in one set of mass RNAi assays. WormBase CDS description: Peptidyl-prolyl cis-trans isomerases
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 sir-2.1 regulated
Y82E9BR.14 Aff_Y119D3_446.D P W All gene names: Y82E9BR.14; Y82E9BR.14a.1; Y82E9BR.14a.2; 3C500; CE27038; CE34433; WBGene00022347; WP:CE27038; WP:CE34433
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
ZK1098.4 Aff_ZK1098.4 P W All gene names: ZK1098.4; 3K633; CE00367; WBGene00014221; WP:CE00367 WormBase description: GCN3 (yeast transcription activator)
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Romagnolo et al 2002 Fig3b Protein Synthesis, ViswanathanM et al 2005 S2 sir-2.1 regulated
ZK1236.1 Aff_ZK1236.1 P W All gene names: ZK1236.1; 3J519; CE01446; WBGene00022862; WP:CE01446 WormBase description: homology with E.coli lepA protein
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol
ZK1248.3 Aff_ZK1248.3 P W All gene names: ehs-1; ZK1248.3; 2G113; CE02903; CE32289; NM_062754; WBGene00001224; WP:CE02903; WP:CE32289 WormBase description: The ehs-1 gene encodes an ortholog of mammalian EPS15 that probably functions in endocytosis.
Member of lists (Publications lists):
McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated
ZK1307.5 Aff_ZK1307.5 P W All gene names: spe-2; sqv-8; ZK1307.5; 2J939; CE01694; NM_063675; WBGene00005026; WP:CE01694 WormBase description: The sqv-8 gene encodes a glucuronyl transferase, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-8 is homologous to three distinct glucuronyl transferases (GlcAT-I, GlcAT-P and GlcAT-D) that play a role in the synthesis of different glycoconjugates; the common requirement for SQV-8 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.
Member of lists (Publications lists):
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E
ZK829.5 Aff_ZK829.5 P W All gene names: tbx-36; ZK829.5; 4M717; CE06653; NM_069865; WBGene00006555; WP:CE06653
Member of lists (Publications lists):
Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated
ZK858.7 Aff_ZK858.7 P W All gene names: ZK858.7; 1J718; CE35204; WBGene00014120; WP:CE35204
Member of lists (Publications lists):
Lund et al 2002 Fig3D Oocyte-en, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated