Golden et al 2004, N2 vs daf-2 different genes at , 18 genes

Gene list file name:Golden2004_T3_N2_vs_daf2_differ_4days.txt
Type of gene identifier:MA primer pair (sjj)
Description:Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 4days  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0228.5 B0228.5 P W All gene names: B0228.5; 2I42; CE01745; CE34629; WBGene00015062; WP:CE01745; WP:CE34629 WormBase description: B0228.5 encodes a thioredoxin, a small redox protein that functions as a protein-disulfide reductase; loss of B0228.5 activity via a deletion mutation and RNAi indicates that B0228.5 is required for normal adult lifespan; in vitro, the product of B0228.5 is capable of reducing protein disulfide bonds in the presence of a mammalian thioredoxin reductase; a B0228.5 translational GFP fusion protein is expressed in the ASJL/R amphid chemosensory neurons in males and hermaphrodites beginning just prior to hatching and continuing through larval and adult stages, including the alternative dauer larval stage; expression is also variably detected in posterior intestinal cells in larvae and adults, but not in dauers; subcellularly, the B0228.5::GFP fusion protein is detected in the nucleus, cytoplasm, cilia, dendrites, and axons.
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig1-4                                 
                                              conserved w/ Drosoph                                                               

C12D12.6 C12D12.6 P W All gene names: C12D12.6; WBGene00015717; XE132
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , ViswanathanM et al 2005  S2                             
                                              daf-16 Resveratrol                                                                 

C34D4.15 C34D4.15 P W All gene names: col-113; C34D4.15; 4H916; CE17509; NM_068722; WBGene00000687; WP:CE17509
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Jones et al 2001  Non dauer                             
                                              genes P<0.05, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F23H12.4 F23H12.4 P W All gene names: col-1; dpy-15; sqt-3; F23H12.4; F23H12.4.1; F23H12.4.2; 5M833; CE05707; NM_073694; WBGene00005018; WP:CE05707 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Golden et al 2004, daf-2 differentially expressed ,                                
                                              Golden et al 2004, N2 vs daf-2 different genes at ,                                
                                              ReichertK et al 2005  T2 xenobiotic induced Collag,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                            
                                               S4 LateList                                                                       

F30F8.2 F30F8.2 P W All gene names: F30F8.2; 1I404; CE28553; WBGene00009271; WP:CE28553 WormBase description: glutaminase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, Reinke et al 2004, herm                                  
                                              sperm, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster D                                                   

F39G3.5 F39G3.5 P W All gene names: F39G3.5; 5F201; CE10120; CE36933; WBGene00018210; WP:CE10120; WP:CE36933
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order                                                                      

F40E10.1 F40E10.1 P W All gene names: hch-1; nas-34; F40E10.1; CE24964; NM_078039; WBGene00001828; WP:CE24964; XP316 WormBase description: hch-1 encodes a member of the zinc-dependent metalloprotease family that contains an epidermal growth factor-like domain, a CUB domain, and a TSP1 domain and affects hatching and QL neuroblast migration. WormBase CDS description: metalloprotease
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, Jones et al 2001  Non dauer genes                                  
                                              P<0.05                                                                             

F46H5.3 F46H5.3 P W All gene names: F46H5.3; F46H5.3b.1; F46H5.3b.2; F46H5.3b.3; CE33098; CE37112; WBGene00018519; WP:CE33098; WP:CE37112; XH850 WormBase description: arginine kinase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig1-4                                 
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 LateList                                                       

F55A11.4 F55A11.4 P W All gene names: F55A11.4; 5M253; WBGene00010077
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig5                                   
                                              conserved w/ yeast, Reinke et al 2004, list of genes in                            
                                              cluster order, Reinke et al 2004, intrinsic, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

H05B21.4 H05B21.4 P W All gene names: srw-144; H05B21.4; 5D432; CE34568; NM_071404; WBGene00005891; WP:CE34568 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

K02F6.1 K02F6.1 P W All gene names: K02F6.1; 2C845; CE11656; WBGene00019335; WP:CE11656
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, wt herm vs wt                              
                                              herm enriched gen                                                                  

M60.2 M60.1 P W All gene names: M60.2; M60.2.1; M60.2.2; CE28630; WBGene00019779; WP:CE28630; XI865
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, Golden et al 2004, N2 differentially                               
                                              expressed gen, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S4                               
                                              genes pass two-wayANOVA P0                                                         

T15B7.4 T15B7.4 P W All gene names: col-142; T15B7.4; 5H313; CE13654; NM_072335; WBGene00000715; WP:CE13654 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Golden et al 2004, N2 vs                                
                                              daf-2 age different gene, Reinke et al 2004, list of                               
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

Y49A3A.4 Y49A3A.4 P W All gene names: Y49A3A.4; Y49A3A.E; 5O838; CE22212; WBGene00013027; WP:CE22212
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y55D5A.6 Y55D5A_391.A P W All gene names: Y55D5A.6; 3E132; CE22512; WBGene00021919; WP:CE22512
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at                                                                 

Y59C2A.1 Y59C2A.1 P W All gene names: Y59C2A.1; 2C501; CE31658; WBGene00021984; WP:CE31658 WormBase description: carboxypeptidase
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at                                                                 

ZC373.7 ZC373.7 P W All gene names: col-176; ZC373.7; CE02380; NM_077291; WBGene00000749; WP:CE02380; XK697 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, daf-2                                          
                                              differentially expressed , Golden et al 2004, N2 vs                                
                                              daf-2 different genes at , Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, wt herm vs                              
                                              wt herm enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster B, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

ZK721.2 ZK721.2 P W All gene names: tni-2; unc-27; unc-99; ZK721.2; CE40008; NM_077087; WBGene00006764; WP:CE40008; XJ409 WormBase description: troponin I
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , McCarroll et al 2004  SFig1-4                                 
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C