Baugh et al 2003, subclass E_83min, 413 genes

Gene list file name:Baugh2003_classEpi_83min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass E_425min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AC3.7 Aff_AC3.7 P W All gene names: dod-15; ugt-1; AC3.7; 5K877; CE05137; NM_073270; WBGene00007072; WP:CE05137 WormBase description: UDP-glucuronosyltransferase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Murphy et al 2003  Fig2 Class1                                   
                                              elongate lifespan, ReichertK et al 2005  T1 xenobiotic                             
                                              induced UDP-gl, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, Reinke et al 2004, GO categories, Reinke et al                              
                                              2004, list of genes in cluster B, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

AFF_C23H3.4 Aff_C23H3.4 P W
AFF_C45E1.4 Aff_C45E1.4 P W
AFF_F20D12.5 Aff_F20D12.5 P W
AFF_F21H12.1 Aff_F21H12.1 P W
AFF_F23F12.2 Aff_F23F12.2 P W
AFF_F28B3.6 Aff_F28B3.6 P W
AFF_F39D8.2 Aff_F39D8.2 P W
AFF_F43C11_37.B Aff_F43C11_37.B P W
AFF_F44B9.8 Aff_F44B9.8 P W
AFF_H24O09.C Aff_H24O09.C P W
AFF_R11D1.9 Aff_R11D1.9 P W
AFF_W09G12.3 Aff_W09G12.3 P W
AFF_Y105E8A.P Aff_Y105E8A.P P W
AFF_Y116A8A.LL Aff_Y116A8A.LL P W
AFF_Y116F11.ZZ17 Aff_Y116F11.ZZ17 P W
AFF_Y25C1A.A Aff_Y25C1A.A P W
AFF_Y45F10A.3 Aff_Y45F10A.3 P W
AFF_Y46B2_176.B Aff_Y46B2_176.B P W
AFF_Y55B1B_119.G Aff_Y55B1B_119.G P W
AFF_Y59A8A.U Aff_Y59A8A.U P W
AFF_Y71A12B.A Aff_Y71A12B.A P W
AFF_Y75B8A.U Aff_Y75B8A.U P W
AFF_Y77E11A_3443.Q Aff_Y77E11A_3443.Q P W
AFF_ZK783.4 Aff_ZK783.4 P W
B0205.6 Aff_B0205.6 P W All gene names: B0205.6; 1L315; CE30405; WBGene00015021; WP:CE30405 WormBase description: aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

B0280.8 Aff_B0280.8 P W All gene names: nhr-10; B0280.8; 3I202; CE00815; NM_066153; WBGene00003609; WP:CE00815 WormBase description: nhr-10 encodes a predicted nuclear hormone receptor diverged from nuclear hormone receptors in other phyla; its mRNA is expressed throughout development with possibly lower expression from the L4 larval to adult stages, and the protein is expressed in neuronal processes. WormBase CDS description: retinoic acid
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0303.7 Aff_B0303.7 P W All gene names: B0303.7; 3J787; CE36521; WBGene00015128; WP:CE36521 WormBase description: Neutrophil oxidase factor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

B0336.4 Aff_B0336.4 P W All gene names: rgs-5; B0336.4; 3G791; CE32098; NM_065828; WBGene00004348; WBGene00015144; WP:CE32098 WormBase description: rgs-5 encodes a regulator of G protein signaling; by homology, RGS-5 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling; loss of rgs-5 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-5 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability; an rgs-5 transcriptional reporter is expressed in head neurons in larvae and adults.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

B0432.10 Aff_B0432.10 P W All gene names: B0432.10; 2A574; CE07748; WBGene00015191; WP:CE07748
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

B0432.3 Aff_B0432.3 P W All gene names: B0432.3; 2A579; CE07741; WBGene00015185; WP:CE07741
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

B0454.9 Aff_B0454.9 P W All gene names: B0454.9; 2D344; CE07759; WBGene00015200; WP:CE07759
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

B0491.1 Aff_B0491.1 P W All gene names: B0491.1; 2L639; CE02103; WBGene00007189; WP:CE02103
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

B0547.1 Aff_B0547.1 P W All gene names: csn-5; B0547.1; B0547.1.1; B0547.1.2; 4G415; CE06722; NM_068440; WBGene00000817; WP:CE06722 WormBase description: csn-5 encodes an ortholog of subunit 5 of the COP9 signalosome complex (CSN5), which in turn is a pan-eukaryotic multiprotein complex that positively regulates E3 ubiquitin ligases, physically interacts with SCF-type E3 ubiquitin ligases, and probably regulates protein degradation; CSN-5 (along with KGB-1 and ZYX-1) physically binds germline RNA helicases (GLH proteins), and csn-5(RNAi) results in sterile worms with small gonads and no oocytes, causing oogenesis to cease, but not affecting the initial assembly of P granules -- a defect essentially identical to that produced by RNAi with a combination of glh-1 and glh-4.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C01B12.8 Aff_C01B12.8 P W All gene names: C01B12.8; CE07796; NM_061235; WBGene00015291; WP:CE07796
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories                                                                

C01G10.9 Aff_C01G10.9 P W All gene names: C01G10.9; 5P563; CE07818; WBGene00007236; WP:CE07818 WormBase description: Initiation factor 2 subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4 Early                              
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

C01G6.2 Aff_C01G6.2 P W All gene names: C01G6.2; 2J557; CE02958; WBGene00007224; WP:CE02958
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, spermatogenesis enriched genes, Reinke et al                              
                                              2004, wt herm vs wt herm enriched gen, Reinke et al                                
                                              2004, fem3 enriched genes, Reinke et al 2004, IVb male                             
                                              soma enriched genes, Reinke et al 2004, wt vs glp-4                                
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster D, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C01G6.4 Aff_C01G6.4 P W All gene names: C01G6.4; 2J562; CE00866; WBGene00007226; WP:CE00866 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C02B10.4 Aff_C02B10.4 P W All gene names: C02B10.4; C02B10.4.1; C02B10.4.2; 4F857; CE16801; WBGene00015329; WP:CE16801
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C03B1.7 Aff_C03B1.7 P W All gene names: C03B1.7; CE03909; WBGene00015378; WP:CE03909; XG963
C03D6.4 Aff_C03D6.4 P W All gene names: npp-14; C03D6.4; 1K238; CE05198; CeNup214; NM_060167; WBGene00003800; WP:CE05198 WormBase description: npp-14 is orthologous to the human gene NUCLEOPORIN, 214-KD (NUP214; OMIM:114350), which encodes part of the nucleopore complex mediating nucleocytoplasmic transport; NUP214, as a fusion gene with DEK (OMIM:125264), is found in a subset of acute myeloid leukemia. WormBase CDS description: nucleoporin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C04F5.9 Aff_C04F5.9 P W All gene names: C04F5.9; 5F594; CE19673; WBGene00015451; WP:CE19673
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C05C8.2 Aff_C05C8.2 P W All gene names: C05C8.2; 5H713; CE07920; WBGene00015461; WP:CE07920
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C05D10.1 Aff_C05D10.1 P W All gene names: C05D10.1; C05D10.1a.1; C05D10.1a.2; C05D10.1c.1; C05D10.1c.2; C05D10.1c.3; C05D10.1c.4; 3H173; CE24783; CE30420; CE37698; WBGene00015477; WP:CE24783; WP:CE30420; WP:CE37698
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C05D10.3 Aff_C05D10.3 P W All gene names: C05D10.3; 3H174; CE29170; WBGene00015479; WP:CE29170
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C05D11.9 Aff_C05D11.9 P W All gene names: C05D11.9; 3H518; CE24787; WBGene00015486; WP:CE24787
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Romagnolo et                             
                                              al 2002  Fig3b Unkown, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated                                                                  

C05D9.7 Aff_C05D9.7 P W All gene names: C05D9.7; CE07933; WBGene00015474; WP:CE07933; XB736
C05E4.9 Aff_H24O09.A P W All gene names: gei-7; C05E4.9; C05E4.9a.1; C05E4.9a.2; C05E4.9a.3; C05E4.9b.1; C05E4.9b.2; 5B204; CE23521; CE32565; NM_070905; WBGene00001564; WP:CE23521; WP:CE32565 WormBase description: gei-7 encodes a predicted isocitrate lyase/malate synthase, an enzyme known to function in the glyoxylate cycle; GEI-7 was identified in a screen for proteins that interact with GEX-3, a homolog of human HEM-2 which is required for embryonic development; GEI-7 is required for embryonic morphogenesis and appears to act downstream of DAF-16 to influence lifespan.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Murphy et al 2003  Fig2 Class1 elongate                                  
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

C05G5.2 Aff_C05G5.2 P W All gene names: C05G5.2; CE05225; WBGene00007348; WP:CE05225; XP367
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C06A1.5 Aff_C06A1.5 P W All gene names: C06A1.5; 2K871; CE02117; WBGene00007355; WP:CE02117 WormBase description: DNA directed RNA polymerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

C06A5.5 Aff_C06A5.5 P W All gene names: C06A5.5; 1G558; CE07952; WBGene00015503; WP:CE07952 WormBase description: RNA-binding protein
C06G1.4 Aff_C06G1.4 P W All gene names: ain-1; C06G1.4; C06G1.4.1; C06G1.4.2; CE03967; WBGene00015547; WP:CE03967; XR231
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

C07A12.3 Aff_C07A12.3 P W All gene names: nhr-35; C07A12.3; CE30855; CE38483; NM_076378; WBGene00003628; WP:CE30855; WP:CE38483; XF155 WormBase description: zinc finger protein
C08A9.6 Aff_C08A9.6 P W All gene names: C08A9.6; CE06788; WBGene00015586; WP:CE06788; XR708
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C08B11.7 Aff_C08B11.7 P W All gene names: ubh-4; C08B11.7; 2I328; CE36913; NM_063283; WBGene00006724; WP:CE36913 WormBase description: thiolesterase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

C09G5.4 Aff_C09G5.4 P W All gene names: col-39; C09G5.4; 2K995; CE01484; NM_063908; WBGene00000616; WP:CE01484 WormBase description: col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C10C5.5 Aff_C10C5.5 P W All gene names: C10C5.5; 4K147; CE36099; WBGene00007509; WP:CE36099 WormBase description: aminoacylase-1
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, GO categories, Reinke et                              
                                              al 2004, IVb male soma enriched genes, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C10E2.4 Aff_C10E2.4 P W All gene names: C10E2.4; CE08063; WBGene00015674; WP:CE08063; XR360
C10F3.5 Aff_C10F3.5 P W All gene names: pcm-1; C10F3.5; 5G442; CE08070; NM_072150; WBGene00003954; WP:CE08070 WormBase description: L-isoaspartyl/D-aspartyl methyltransferase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C13C4.4 Aff_C13C4.4 P W All gene names: C13C4.4; 5M590; CE20504; WBGene00007548; WP:CE20504
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes                                             

C14C10.4 Aff_C14C10.4 P W All gene names: C14C10.4; C14C10.4.1; C14C10.4.2; 5N74; CE05283; WBGene00007587; WP:CE05283
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, GO categories, Reinke                             
                                              et al 2004, herm soma enriched genes, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C14F5.1 Aff_C14F5.1 P W All gene names: BCL-2; C14F5.1; CE01780; CE29172; WBGene00015776; WP:CE01780; WP:CE29172; XI573
C15H11.8 Aff_C15H11.8 P W All gene names: C15H11.8; 5O904; CE08185; WBGene00007616; WP:CE08185 WormBase description: DNA-directed RNA polymerase I like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

C15H9.10 Aff_C15H9.10 P W All gene names: C15H9.10; CE06836; WBGene00015804; WP:CE06836; XG730
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C16A3.3 Aff_C16A3.3 P W All gene names: C16A3.3; 3H477; CE27690; NM_065997; WBGene00015808; WP:CE27690
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig5                                    
                                              conserved w/ yeast, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C16B8.4 Aff_C16B8.4 P W All gene names: C16B8.4; CE30248; WBGene00015824; WP:CE30248; XE590
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

C17G10.1 Aff_C17G10.1 P W All gene names: C17G10.1; C17G10.1.1; C17G10.1.2; 2F887; CE01785; WBGene00015915; WP:CE01785
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

C18A11.7 Aff_C18A11.7 P W All gene names: dim-1; C18A11.7; C18A11.7b.1; C18A11.7b.2; C18A11.7b.3; C18A11.7b.4; CE04038; CE27706; WBGene00001000; WP:CE04038; WP:CE27706; XI670
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C                                      

C18A3.5 Aff_C18A3.5 P W All gene names: C18A3.5; C18A3.5e.1; C18A3.5e.2; C18A3.5f.1; C18A3.5f.2; C18A3.5f.3; C18A3.5f.4; C18A3.5f.5; 2G2; CE27708; CE27709; CE27710; CE32130; CE32131; WBGene00015943; WP:CE27708; WP:CE27709; WP:CE27710; WP:CE32130; WP:CE32131 WormBase description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma                                       

C18A3.8 Aff_C18A3.8 P W All gene names: hlh-14; C18A3.8; 2G28; CE36629; NM_062730; WBGene00001958; WP:CE36629 WormBase description: hlh-14 encodes a basic helix-loop-helix (bHLH) transcription factor that is one of five C. elegans Achaete-Scute family homologs; HLH-14 activity is required generally for normal egg-laying, movement, body morphology, and larval development; more specifically, HLH-14 is required for proper neuronal development, particularly for regulation of the asymmetric cell division that gives rise to the PVQ/HSN/PHB neuroblasts and for normal differentiation of these neuroblast descendants, including their cell division patterns, migrations, and neurotransmitter expression; in specifying neuronal cell fates, genetic evidence suggests that hlh-14 acts together with hlh-2, which encodes the C. elegans E/Daughterless ortholog; HLH-14 is expresed exclusively in the embryo and detected in the left and right PVQ/HSN/PHB neuroblasts and their descendants, as well as in other cells identified, tentatively, as anterior neuroblasts and posterior neuroblasts such as Caapa. WormBase CDS description: helix-loop-helix transcription factor
C18B12.6 Aff_C18B12.6 P W All gene names: C18B12.6; CE32590; WBGene00007668; WP:CE32590; XP624
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C18D11.2 Aff_C18D11.2 P W All gene names: maa-1; C18D11.2; 3M910; CE18513; NM_067130; WBGene00007680; WP:CE18513 WormBase description: maa-1 encodes a predicted membrane-associated Acyl-CoA binding protein; loss of maa-1 activity via RNAi results in no obvious defects. WormBase CDS description: Acyl CoA binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C18H7.3 Aff_C18H7.3 P W All gene names: col-102; C18H7.3; 4B353; CE17428; NM_067556; WBGene00000676; WP:CE17428 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C18H9.3 Aff_C18H9.3 P W All gene names: C18H9.3; 2G981; CE01803; WBGene00016002; WP:CE01803
C23G10.3 Aff_C23G10.3 P W All gene names: rps-3; C23G10.3; C23G10.3.1; C23G10.3.2; 3H297; CE01810; NM_065948; WBGene00004472; WP:CE01810 WormBase description: rps-3 encodes a small ribosomal subunit S3 protein that contains a KH RNA-binding domain and by homology,is predicted to function in protein biosynthesis; in C. elegans, RPS-3 activity is required for embryonic and germline development, as well as the overall health of the animal. WormBase CDS description: Ribosomal protein S3
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C25A1.13 Aff_C25A1.13 P W All gene names: C25A1.13; 1K769; CE08379; WBGene00007712; WP:CE08379 WormBase description: NADH-ubiquinone oxidoreductase B8 subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C26E6.6 Aff_C26E6.6 P W All gene names: C26E6.6; C26E6.6.1; C26E6.6.2; 3G25; CE39477; WBGene00016142; WP:CE39477 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Ribosomal protein L3
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C27D8.3 Aff_C27D8.3 P W All gene names: C27D8.3; 4N472; CE08422; CE39679; WBGene00007779; WP:CE08422; WP:CE39679 WormBase description: The C27D8.3 gene encodes a protein that may be involved in apoptosis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C27F2.8 Aff_C27F2.8 P W All gene names: C27F2.8; 3G82; CE39000; WBGene00016170; WP:CE39000
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C27H6.4 Aff_C27H6.4 P W All gene names: C27H6.4; 5K464; CE08428; CE31322; WBGene00007786; WP:CE08428; WP:CE31322
C29F9.7 Aff_C29F9.7 P W All gene names: pat-4; C29F9.7; C29F9.7.1; C29F9.7.2; 3A708; CE19706; NM_064738; WBGene00003931; WP:CE19706 WormBase description: The pat-4 gene encodes a serine/threonine kinase orthologous to human integrin-linked kinase (ILK, OMIM:602366) and is required for formation of integrin-mediated muscle cell attachments during embryogenesis; PAT-4 probably functions as an adaptor molecule and localizes to dense bodies and M lines; PAT-4 forms a ternary complex with PAT-6/actopaxin and UNC-112, and requires UNC-112, UNC-52/perlecan, PAT-2/alpha integrin, and PAT-3/beta integrin for proper localization to newly forming integrin adhesion complexes. WormBase CDS description: integrin-linked kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Roy et al 2002  S2 positivecontrol L1 muscle                            

C31H2.4 Aff_C31H2.4 P W All gene names: C31H2.4; CE04132; WBGene00016294; WP:CE04132; XF772 WormBase description: C31H2.4 is orthologous to human 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (HPD; OMIM:276710), which when mutated leads to tyrosinemia type III; C31H2.4 is somewhat less similar to human HPD than C. elegans HPD-1 (to which C31H2.4 is paralogous).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C32D5.9 Aff_C32D5.9 P W All gene names: lgg-1; C32D5.9; C32D5.9.1; C32D5.9.2; 2G636; CE01849; NM_062876; WBGene00002980; WP:CE01849
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster A,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C32E8.2 Aff_C32E8.2 P W All gene names: rpl-13; C32E8.2; C32E8.2a.1; C32E8.2a.2; C32E8.2a.3; C32E8.2b.1; C32E8.2b.2; 1E357; CE08526; CE33562; WBGene00004425; WP:CE08526; WP:CE33562 WormBase description: rpl-13 encodes a large ribosomal subunit L13 protein.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C33H5.15 Aff_C33H5.15 P W All gene names: sgo-1; C33H5.15; 4I560; CE34732; NM_068889; WBGene00016381; WP:CE34732
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C34E7.4 Aff_C34E7.4 P W All gene names: C34E7.4; CE03061; WBGene00007934; WP:CE03061; XN552
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C34G6.4 Aff_C34G6.4 P W All gene names: pgp-2; C34G6.4; 1G471; CE29212; NM_059306; WBGene00003996; WP:CE29212 WormBase description: pgp-2 encodes a member of the ABC transporter family with highest similarity to the vertebrate MDR (multidrug resistance) family, and is orthologous to human MDR1 (ABCB1; OMIM:171050, mutated in Crohn disease); PGP-2 is expressed at lower levels during the embryonic stages with higher expression later in development. WormBase CDS description: abc transporter
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C                                                                          

C34G6.6 Aff_C34G6.6 P W All gene names: noah-1; C34G6.6; C34G6.6a.1; C34G6.6a.2; 1G452; CE29699; CE30432; WBGene00016422; WP:CE29699; WP:CE30432
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 LateList, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

C35D10.9 Aff_C35D10.9 P W All gene names: ced-4; C35D10.9; 3F943; CE01203; CE38154; WBGene00000418; WP:CE01203; WP:CE38154 WormBase description: ced-4 encodes a novel protein; along with CED-3, CED-4 is required for the initiation of programmed cell death; accordingly, genetic analyses indicate that ced-3 and ced-4 function upstream of ced-1, ced-2, and nuc-1 in the programmed cell death pathway; in yeast two-hybrid experiments, and upon coexpression in mammalian cells, CED-4 interacts with CED-9, an anti-apoptotic BCL-2 homolog; coexpression of CED-4 and CED-9 results in redistribution of CED-4 from the cytosol to organellar membranes, suggesting that CED-9 may negatively regulate CED-4 activity by sequestering CED-4 to intracellular membranes.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

C37A2.5 Aff_F08B6.A P W All gene names: pqn-21; C37A2.5; 1H350; CE27748; CE32818; WBGene00004111; WP:CE27748; WP:CE32818 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C37E2.4 Aff_C37E2.4 P W All gene names: ceh-36; C37E2.4; CE08623; NM_077964; WBGene00000457; WP:CE08623; XO802 WormBase description: ceh-36 encodes a paired-like homeodomain transcription factor that is one of three orthodenticle (OTD)-like homeodomain proteins in C. elegans (the others being ttx-1 and ceh-37); CEH-36 is required broadly for specification of the AWC olfactory neuron and also for establishing the left-right asymmetry of the ASEL and ASER gustatory neurons; in addition, CEH-36 is sufficient to specify the AFD thermosensory neuron fate in some cell types; CEH-36 is expressed in the AWC and ASE chemosensory neurons. WormBase CDS description: Homeobox domain
C39E6.4 Aff_C39E6.3 P W All gene names: mls-2; C39E6.4; CE30891; NM_076414; WBGene00003377; WP:CE30891; XF378
C39F7.2 Aff_C39F7.2, Aff_Y50D4A_25.A P W All gene names: C39F7.2; C39F7.2.1; C39F7.2.2; 5B704; CE27581; WBGene00016539; WP:CE27581
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C40A11.2 Aff_C40A11.2 P W All gene names: C40A11.2; C40A11.2.1; C40A11.2.2; 2C437; CE34742; WBGene00016545; WP:CE34742
C40A11.3 Aff_C40A11.3 P W All gene names: C40A11.3; 2C433; CE19366; WBGene00016546; WP:CE19366
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

C41A3.1 Aff_C41A3.1 P W All gene names: C41A3.1; CE04187; WBGene00016558; WP:CE04187; XG59 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: polyketide synthase
C41C4.8 Aff_C41C4.8 P W All gene names: cdc-48.2; C41C4.8; C41C4.8.1; C41C4.8.2; C41C4.8.3; 2I431; CE05402; NM_063304; WBGene00008053; WP:CE05402 WormBase description: P97 protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

C41D11.2 Aff_C41D11.2 P W All gene names: eif-3.H; C41D11.2; 1F13; CE29220; NM_058969; WBGene00001231; WP:CE29220
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, male germline,                            
                                              Reinke et al 2004, wt males vs glp4 male enriched ,                                
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C41H7.1 Aff_C41H7.1 P W All gene names: C41H7.1; 2D307; CE32605; WBGene00016571; WP:CE32605
C43E11.9 Aff_C43E11.9 P W All gene names: C43E11.9; C43E11.9.1; C43E11.9.2; 1E836; CE08687; WBGene00016607; WP:CE08687
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S4 Early genes,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

C43H8.1 Aff_C43H8.1 P W All gene names: C43H8.1; C43H8.1.1; C43H8.1.2; 1L201; CE19377; WBGene00016621; WP:CE19377
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C45B11.1 Aff_C45B11.1 P W All gene names: pak-4; tag-66; C45B11.1; 5L518; CE05425; CE20564; WBGene00006443; WP:CE05425; WP:CE20564 WormBase description: P21-Rho-binding domain ; Eukaryotic protein kinase domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

C45E1.1 Aff_C45E1.1 P W All gene names: nhr-64; C45E1.1; 1D677; CE39696; CE39697; WBGene00003654; WP:CE39696; WP:CE39697 WormBase description: nhr-64 encodes a conserved nuclear receptor that is a member of the NR2 subfamily of nuclear receptors that contains Drosophila and human HNF4 (OMIM:600281, mutations in human HNF4A are associated with Type I MODY (maturity-onset diabetes of the young)); by homology, NHR-64 is predicted to function as a transcription factor that may activate or repress transcription in response to a hormonal signal; however, as loss of nhr-64 activity via RNAi does not result in any obvious abnormalities, the precise role of NHR-64 in C. elegans development and/or behavior is not yet known; nhr-64 is broadly expressed and detected in anterior and posterior neurons, the ventral nerve cord, the pharynx, gut, and hypodermis.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C45E5.6 Aff_C45E5.6 P W All gene names: nhr-46; C45E5.6; C45E5.6a.1; C45E5.6a.2; C45E5.6c.1; C45E5.6c.2; C45E5.6c.3; C45E5.6c.4; C45E5.6c.5; C45E5.6c.6; C45E5.6c.7; C45E5.6c.8; 4G512; CE08734; CE29226; CE29227; NM_068457; WBGene00003636; WP:CE08734; WP:CE29226; WP:CE29227 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C46C11.2 Aff_C46C11.2 P W All gene names: C46C11.2; CE39005; CE39006; WBGene00016705; WP:CE39005; WP:CE39006; XF253
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C46H11.9 Aff_C46H11.9 P W All gene names: phat-2; C46H11.9; 1F614; CE08791; WBGene00016733; WP:CE08791
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

C46H3.2 Aff_C46H3.2 P W All gene names: C46H3.2; C46H3.2b.1; C46H3.2b.2; CE29228; CE33921; WBGene00016725; WP:CE29228; WP:CE33921; XB832 WormBase description: tyrosine-protein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C47C12.3 Aff_C47C12.3 P W All gene names: C47C12.3; C47C12.3a.1; C47C12.3a.2; CE33037; CE35437; NM_076907; WBGene00004335; WP:CE33037; WP:CE35437; XI361 WormBase description: ref-2 is orthologous to the human gene ZINC FINGER PROTEIN OF CEREBELLUM ZIC2 (ZIC2; OMIM:603073), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C47E8.7 Aff_C47E8.7 P W All gene names: unc-112; C47E8.7; C47E8.7.1; C47E8.7.2; 5P172; CE05443; NM_074227; WBGene00006836; WP:CE05443 WormBase description: The unc-112 gene encodes a pleckstrin homology domain-containing protein, orthologous to human Mitogen inducible gene-2, that is required for assembly of muscle dense bodies and M lines during embryogenesis; UNC-112 is a dense body/M-line component and requires PAT-3/beta-integrin, UNC-52/perlecan, and PAT-4/integrin-linked kinase for proper localization; UNC-112 binds PAT-4 directly, forms a ternary complex with PAT-4 and PAT-6/actopaxin, and is required for recruitment of PAT-3 and PAT-4 to muscle cell attachment sites; viable unc-112 mutations are suppressed by mutation of dim-1. WormBase CDS description: mitogen inducible MIG-2 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C                                                                          

C48B6.2 Aff_C48B6.2 P W All gene names: C48B6.2; C48B6.2.1; C48B6.2.2; 1H493; CE08804; WBGene00016740; WP:CE08804 WormBase description: ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C48B6.9 Aff_C48B6.9 P W All gene names: C48B6.9; 1H502; CE08811; WBGene00016745; WP:CE08811
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

C48D1.1 Aff_C48D1.1 P W All gene names: C48D1.1; 4N958; CE32833; CE39701; WBGene00008177; WP:CE32833; WP:CE39701 WormBase description: C.elegans ZYG-11 like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes                                                                              

C49C3.15 Aff_C49C3.15 P W All gene names: C49C3.15; 4S279; CE37493; WBGene00008204; WP:CE37493
C49C3.8 Aff_C49C3.8 P W All gene names: C49C3.8; 4S281; CE19747; WBGene00008198; WP:CE19747
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C49H3.6 Aff_C49H3.6 P W All gene names: C49H3.6; 4I671; CE29380; CE30506; WBGene00016792; WP:CE29380; WP:CE30506
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

C49H3.8 Aff_C49H3.8 P W All gene names: C49H3.8; 4I664; CE04234; WBGene00016793; WP:CE04234 WormBase description: actin-like protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C50B6.9 Aff_C50B6.9 P W All gene names: C50B6.9; 5N819; CE08878; WBGene00008222; WP:CE08878
C52E2.2 Aff_C52E2.H P W All gene names: C52E2.2; C52E2.H; 2C125b; CE20597; WBGene00016881; WP:CE20597
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C52E4.2 Aff_C52E4.2 P W All gene names: mif-2; C52E4.2; C52E4.2.1; C52E4.2.2; 5M458; CE08944; NM_073602; WBGene00003235; WP:CE08944 WormBase description: macrophage migration inhibitory factor like protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C52E4.3 Aff_C52E4.3 P W All gene names: snr-4; C52E4.3; C52E4.3.1; C52E4.3.2; 5M460; CE08945; NM_073603; WBGene00004917; WP:CE08945 WormBase description: small nuclear ribonucleoprotein D2 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories                                                                         

C53C11.4 Aff_C53C11.4 P W All gene names: C53C11.4; CE04267; WBGene00016901; WP:CE04267; XR923 WormBase description: S. muris microneme antigen
C55B6.2 Aff_C55B6.2 P W All gene names: dnj-7; C55B6.2; CE09008; NM_076808; WBGene00001025; WP:CE09008; XH815 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain that is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

C56C10.3 Aff_C56C10.3 P W All gene names: phi-27; tag-309; C56C10.3; C56C10.3.1; C56C10.3.2; 2G881; CE02568; WBGene00016961; WP:CE02568
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

C56G2.15 Aff_C56G2.15 P W All gene names: C56G2.15; 3H456; CE01870; WBGene00016983; WP:CE01870
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

D1022.1 Aff_D1022.1 P W All gene names: ubc-6; D1022.1; 2H771; CE29241; CE39712; NM_063165; WBGene00006703; WP:CE29241; WP:CE39712 WormBase description: Ubiquitin-conjugating enzyme
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

D1025.2 Aff_D1025.2 P W All gene names: D1025.2; CE17610; WBGene00008354; WP:CE17610; XP132 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Wang et al 2003  S4 Early genes, Wang et al                               
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

D1069.4 Aff_D1069.4 P W All gene names: D1069.4; 2A642; CE17616; WBGene00017038; WP:CE17616
D2007.5 Aff_D2007.5 P W All gene names: D2007.5; D2007.5.1; D2007.5.2; 3J246; CE00130; WBGene00017045; WP:CE00130
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

D2089.3 Aff_D2089.3 P W All gene names: D2089.3; 2K952; CE00938; WBGene00008434; WP:CE00938
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

E03A3.3 Aff_E03A3.3 P W All gene names: his-69; E03A3.3; 3F148; CE00942; NM_065410; WBGene00001943; WP:CE00942 WormBase description: his-69 encodes a truncated H3 histone. WormBase CDS description: histone H3
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

E03E2.1 Aff_E03E2.1 P W All gene names: cyp-43A1; E03E2.1; E03E2.1.1; E03E2.1.2; CE29747; NM_076560; WBGene00017108; WP:CE29747; XG335 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

E04A4.8 Aff_E04A4.8, Aff_Y17G9B.E P W All gene names: rpl-20; E04A4.8; E04A4.8.1; E04A4.8.2; 4F516; CE21392; NM_068229; WBGene00004432; WP:CE21392 WormBase description: rpl-20 encodes a large ribosomal subunit L18a protein. WormBase CDS description: ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

EEED8.2 Aff_EEED8.2 P W All gene names: EEED8.2; 2F707; CE01886; WBGene00017133; WP:CE01886
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

EEED8.8 Aff_EEED8.8 P W All gene names: ndx-6; EEED8.8; 2F680; CE27911; NM_062614; WBGene00003583; WP:CE27911 WormBase description: The ndx-6 gene encodes a NUDIX hydrolase.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F01G10.8 Aff_F01G10.8 P W All gene names: daf-14; F01G10.8; 4L19; CE29090; NM_069479; WBGene00000910; WP:CE29090 WormBase description: daf-14 encodes a Smad-related protein that is unusual in that while its C-terminus is well-conserved with Smad proteins, it lacks the N-terminal DNA binding domain found in all other known Smads; DAF-14 is predicted to function as a transducer of the DAF-7/TGF-beta-mediated signal that promotes reproductive growth and negatively regulates dauer formation; as reduction of daf-14 function enhances the dauer constitutive phenotype of daf-8 mutants, and overexpression of daf-14 can rescue daf-8 mutant animals, it is likely that the DAF-14 and DAF-8 Smad proteins function in parallel to control dauer formation; further genetic analyses suggest that DAF-14 and DAF-8 function to antagonize the activities of the DAF-3 Smad and DAF-5 Sno/Ski oncoprotein, which are required for dauer formation; a DAF-14::GFP reporter is expressed in a dynamic pattern in tissues, such as the hypodermis, intestine, and pharynx, that are remodeled during dauer development. WormBase CDS description: Mouse MSMAD protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F02A9.2 Aff_F02A9.2 P W All gene names: far-1; F02A9.2; F02A9.2.1; F02A9.2.2; F02A9.2.3; 3K170; CE00133; NM_066609; WBGene00001385; WP:CE00133 WormBase description: far-1 encodes a fatty acid/retinol binding protein; expressed throughout development with highest expression levels in L3 stage larvae and in adult males. WormBase CDS description: O. volvulus 20Kd antigenic peptide
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F02E8.3 Aff_F02E8.3 P W All gene names: aps-2; F02E8.3; CE07018; NM_076366; WBGene00000157; WP:CE07018; XF77 WormBase description: The aps-2 gene encodes an adaptin: specifically, it encodes an ortholog of the sigma2 subunit of adaptor protein complex 2 (AP-2), which mediates endocytosis from the plasma membrane; APS-2 appears to be required for embryonic and larval development and for normal body morphology, but is not required for endocytosis of yolk protein in developing oocytes; APS-2 is expressed in nearly all cells during embryogenesis, but during larval and adult stages, expression is confined to neurons and some hypodermal cells, including vulval hypodermal cells during the fourth larval stage. WormBase CDS description: Clathrin coat assembly protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

F02E9.7 Aff_F02E9.7 P W All gene names: F02E9.7; 1I991; CE09190; WBGene00008531; WP:CE09190 WormBase description: acid phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F07A11.2 Aff_F07A11.2 P W All gene names: F07A11.2; F07A11.2b.1; F07A11.2b.2; F07A11.2b.3; 2L884; CE03144; CE27915; WBGene00008546; WP:CE03144; WP:CE27915 WormBase description: glucosamine-fructose-6-phosphate aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, IVb male soma enriched genes                                              

F07A5.7 Aff_F07A5.7 P W All gene names: unc-15; F07A5.7; F07A5.7.1; F07A5.7.2; F07A5.7.3; F07A5.7.4; 1H954; CE09197; NM_059684; WBGene00006754; WP:CE09197 WormBase description: The unc-15 gene encodes a paramyosin ortholog; UNC-15 protein physically interacts with MHC A, one isoform of myosin heavy chain (MHC) in striated muscle; UNC-15 accumulation is decreased in the absence of UNC-54 (myosin B), implying that degradation of UNC-15 is inhibited by its binding myosin B; conversely, myosin B (but not MYO-3/myosin A) fails to accumulate in unc-15 mutants. WormBase CDS description: paramyosin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, IVb male soma enriched                               
                                              genes, Roy et al 2002  S2 positivecontrol L1 muscle,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F08B12.2 Aff_F08B12.2 P W All gene names: prx-12; F08B12.2; CE03163; NM_077507; WBGene00004197; WP:CE03163; XM13 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 TransientList, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F08B6.1 Aff_F08B6.F P W All gene names: F08B6.1; F08B6.F; 1H339; CE39717; WBGene00017239; WP:CE39717
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

F08C6.6 Aff_F08C6.6 P W All gene names: F08C6.6; CE27925; WBGene00017244; WP:CE27925; XI186
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig1-4                                    
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F08F8.2 Aff_F08F8.2 P W All gene names: F08F8.2; 3I451; CE30649; WBGene00017268; WP:CE30649 WormBase description: Hydroxymethylglutaryl-coA reductase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

F08G12.1 Aff_F08G12.1 P W All gene names: F08G12.1; CE03166; WBGene00008585; WP:CE03166; XL922 WormBase description: ras-related like protein
F09E5.3 Aff_F09E5.3 P W All gene names: F09E5.3; F09E5.3.1; F09E5.3.2; 2F665; CE02610; WBGene00017283; WP:CE02610 WormBase description: Deoxyribose-phosphate aldolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F09E5.8 Aff_F09E5.8 P W All gene names: F09E5.8; 2F641; CE02615; WBGene00017286; WP:CE02615
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, McCarroll et al 2004  SFig5 conserved                            
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F10C2.2 Aff_F10C2.2 P W All gene names: kup-1; F10C2.2; 5M514; CE09306; NM_073615; WBGene00002241; WP:CE09306; kup1 WormBase description: kup-1 encodes a novel protein that is conserved in C. briggsae, but contains no other known homologs; kup-1 is the upstream gene in an operon with pkc-1, which encodes two protein kinase C isoforms of the nPKC isotype; the polycistronic kup-1/pkc-1 mRNA is detected at low levels in embryos and larvae, but its expression greatly increases in adults; as loss of kup-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kup-1 in C. elegans development and/or behavior is not yet known. WormBase CDS description: KUP-1 protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F10C2.5 Aff_F10C2.5 P W All gene names: F10C2.5; CE09309; NM_073617; WBGene00008646; WP:CE09309 WormBase description: mannosyl-oligosaccharide alpha-1,2-mannosidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, GO categories, Romagnolo et al 2002  Fig3b                                
                                              Adhesion                                                                           

F10D7.3 Aff_F10D7.3 P W All gene names: F10D7.3; CE29754; WBGene00017340; WP:CE29754; XR988 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: glutaredoxin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F10E7.1 Aff_F10E7.1 P W All gene names: F10E7.1; 2H419; CE39350; WBGene00017343; WP:CE39350
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F10E7.7 Aff_F10E7.7 P W All gene names: rpl-33; F10E7.7; F10E7.7.1; F10E7.7.2; 2H397; CE04362; NM_063067; WBGene00004447; WP:CE04362 WormBase description: rpl-33 encodes a large ribosomal subunit L35a protein. WormBase CDS description: 60s ribosomal protein L35A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F11A3.2 Aff_F11A3.2 P W All gene names: F11A3.2; 5J997; CE05586; CE38501; WBGene00008670; WP:CE05586; WP:CE38501 WormBase description: guanine nucleotide exchange factor
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, McCarroll et al 2004  SFig1-4                                  
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

F11E6.3 Aff_F11E6.3 P W All gene names: F11E6.3; F11E6.3.1; F11E6.3.2; 4S414; CE19783; WBGene00008707; WP:CE19783
F13D12.2 Aff_F13D12.2 P W All gene names: ldh-1; F13D12.2; 2M15; CE02181; LDH; NM_064102; WBGene00002262; WP:CE02181 WormBase description: ldh-1 is orthologous to the human gene LACTATE DEHYDROGENASE B (LDHB; OMIM:150100), which when mutated leads to lactate dehydrogenase-B deficiency. WormBase CDS description: L-lactate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Early genes,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F13D12.4 Aff_F13D12.4 P W All gene names: alh-8; F13D12.4; F13D12.4a.1; F13D12.4a.2; F13D12.4a.3; F13D12.4a.4; 2M21; CE02183; CE36262; WBGene00000114; WP:CE02183; WP:CE36262 WormBase description: alh-8 is orthologous to the human gene METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE (ALDH6A1; OMIM:603178), which when mutated leads to MMSDH deficiency.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F14F3.2 Aff_F14F3.2 P W All gene names: F14F3.2; CE31478; WBGene00008805; WP:CE31478; XL145 WormBase description: ankyrin motif
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S4 Early genes,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F16B4.8 Aff_F16B4.8 P W All gene names: cdc-25.2; F16B4.8; 5C63; CE19796; NM_071045; WBGene00000387; WP:CE19796 WormBase description: cdc-25.2 encodes a putative homolog of Cdc25 phosphatase protein family that affects germline proliferation. WormBase CDS description: protein-tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

F16D3.4 Aff_F16D3.4 P W All gene names: F16D3.4; 1I940; CE09437; WBGene00008887; WP:CE09437 WormBase description: F16D3.4 encodes an ortholog of human TUBULIN-SPECIFIC CHAPERONE D (TBCD; OMIM:604649), also known as tubulin-folding cofactor D; F16D3.4 may be a ligand and effector of the ARL2 ortholog EVL-20.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F17C11.8 Aff_F17C11.8 P W All gene names: tag-318; F17C11.8; F17C11.8.1; F17C11.8.2; 5L440; CE38502; WBGene00008919; WP:CE38502
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F17E9.10 Aff_F17E9.10 P W All gene names: his-32; F17E9.10; 4J99; NM_069006; WBGene00001906 WormBase description: his-32 encodes an H3 histone; by homology, HIS-32 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-32 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. WormBase CDS description: histone H3
F17H10.1 Aff_F17H10.1 P W All gene names: F17H10.1; CE03226; WBGene00008925; WP:CE03226; XN725
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F18C5.3 Aff_F18C5.3 P W All gene names: tag-184; F18C5.3; 2G843; CE02652; WBGene00007050; WBGene00017558; WP:CE02652
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen                                                       

F20G4.1 Aff_F20G4.1 P W All gene names: F20G4.1; 1I496; CE34296; WBGene00008990; WP:CE34296
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, ViswanathanM et al 2005  S2 daf-16 Resveratrol                                

F22F7.1 Aff_F22F7.1 P W All gene names: F22F7.1; F22F7.1a.1; F22F7.1a.2; 5C603; CE17691; CE32871; WBGene00017719; WP:CE17691; WP:CE32871
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, herm soma                                 
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated                                                                          

F23C8.4 Aff_F23C8.K P W All gene names: ubxn-1; F23C8.4; F23C8.K; 1D3; CE20713; WBGene00017733; WP:CE20713
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

F25B4.1 Aff_F25B4.1 P W All gene names: F25B4.1; F25B4.1.1; F25B4.1.2; 5G193; CE09620; WBGene00017765; WP:CE09620 WormBase description: F25B4.1 is orthologous to the human gene GLYCINE CLEAVAGE SYSTEM T-PROTEIN (AMT; OMIM:238310), which when mutated leads to glycine encephalopathy. WormBase CDS description: aminomethytransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, herm soma enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

F25B4.8 Aff_F25B4.8 P W All gene names: F25B4.8; 5G170; CE30761; CE30762; WBGene00017771; WP:CE30761; WP:CE30762
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F25C8.4 Aff_F25C8.4 P W All gene names: F25C8.4; 5V375; CE18637; WBGene00009106; WP:CE18637 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: AMP-binding enzymes
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F26F4.3 Aff_F26F4.3 P W All gene names: rom-1; F26F4.3; 3F995; CE32392; NM_065628; WBGene00004400; WP:CE32392
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F26G5.9 Aff_F26G5.9 P W All gene names: tam-1; F26G5.9; 5F438; CE09704; NM_071934; WBGene00006523; WP:CE09704 WormBase description: tam-1 encodes a broadly expressed nuclear protein with RING finger, B-box, and glutamine/asparagine-rich domains that promotes signalling in the class B synthetic-multivulva gene pathway (which includes the lin-35/RB gene), and also promotes the activity of genes in multicopy transgenic arrays; the normal role of TAM-1's class B activity is presumably to inhibit RAS pathway activity in vulval development, while TAM-1's effect on transgenes may be through changes in the acetylation state of histones in chromatin.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma                                            

F26H9.6 Aff_F26H9.6 P W All gene names: CE-RAB5; rab-5; F26H9.6; F26H9.6.1; F26H9.6.2; 1J885; CE09711; NM_060080; WBGene00004268; WP:CE09711 WormBase description: rab-5 encodes a rab related protein of the Ras GTPase superfamily that affects both the localization of P-granules and of PAR-2, and also affects embryonic and larval viability and the cytoplasmic appearance of cells in the early embryo. WormBase CDS description: RAS-related protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories                                                                         

F29C4.7 Aff_F29C4.7 P W All gene names: F29C4.7; F29C4.7a.1; F29C4.7a.2; F29C4.7b.1; F29C4.7b.2; 4A876; CE17724; CE31493; CE37226; WBGene00017929; WP:CE17724; WP:CE31493; WP:CE37226 WormBase description: F29C4.7 is orthologous to human RBM15 (OMIM:606077, mutated in infantile acute megakaryoblastic leukemia) and Drosophila NITO; F29C4.7 encodes a paralog of DIN-1; like DIN-1, it has N-terminal RNA recognition motifs (RRMs) and a C-terminal SID/RD (SMRT interaction domain/repressor) domain.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

F29F11.1 Aff_F29F11.1 P W All gene names: sqv-4; F29F11.1; F29F11.1.1; F29F11.1.2; 5L140; CE05767; NM_073329; WBGene00005022; WP:CE05767 WormBase description: sqv-4 encodes a UDP-glucose 6-dehydrogenase, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-4 is orthologous to Drosophila SUGARLESS, human UGDH (OMIM:603370), and zebrafish JEKYLL; SQV-4 is expressed in many cell types, notably oocytes and uterine, seam, pharyngeal, and spermathecal cells, with expression being prominent in 14 of the 22 vulval nuclei of late L4 larvae; the common requirement for SQV-4 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid. WormBase CDS description: UDP-glucose dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F30A10.6 Aff_F30A10.6 P W All gene names: F30A10.6; 1K67; CE09807; WBGene00009264; WP:CE09807 WormBase description: Yeast recessive suppressor RSD1 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F31C3.1 Aff_F31C3.1 P W All gene names: cyn-5; cyp-5; F31C3.1; F31C3.1.1; F31C3.1.2; 1P632; CE17730; NM_061223; WBGene00000881; WP:CE17730 WormBase description: cyp-5 encodes a cyclophilin that is functional in vitro and is predicted to be a secreted protein that is structurally most similar to human cyclophilin B; expressed in the intestine. WormBase CDS description: cyclophillin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F31C3.5 Aff_F31C3.5 P W All gene names: F31C3.5; 1P647; CE17734; WBGene00009287; WP:CE17734
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, list of                             
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

F32A5.6 Aff_F32A5.6 P W All gene names: prx-13; F32A5.6; 2H540; CE28290; NM_063112; WBGene00004198; WP:CE28290 WormBase description: prx-13 is orthologous to the human gene PEX13 (OMIM:601789), which when mutated leads to Zellweger syndrome or neonatal adrenoleukodystrophy.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F32A6.4 Aff_F32A6.4 P W All gene names: ags-3.1; ags-3; F32A6.4; CE04472; CE29783; CE34009; NM_171684; NM_171951; WBGene00000092; WP:CE04472; WP:CE29783; WP:CE34009; XF910 WormBase description: ags-3 encodes an ortholog of mammalian AGS3, a receptor independent activator of G protein signalling, and of Drosophila RAPSYNOID; AGS-3 proteins have four GoLoco motifs; AGS-3 is involved in polarity and spindle orientation during early embryogenesis; a region of AGS-3 encompassing three GoLoco motifs specifically binds GOA-1 in yeast two-hybrid assays; AGS-3 is expressed in all muscles, intestine, and weakly in some head and ventral nerve cord neurons, with subcellular localization in strong dots.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F32B6.6 Aff_F32B6.6 P W All gene names: msp-77; F32B6.6; 4K659; CE09861; NM_069380; WBGene00003464; WP:CE09861 WormBase description: msp-77 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

F35E12.3 Aff_F35E12.3 P W All gene names: F35E12.3; 5O205; CE09918; WBGene00009427; WP:CE09918 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. WormBase CDS description: Ser/Thr protein phosphatases
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

F36D4.2 Aff_F36D4.2 P W All gene names: F36D4.2; 5J881; CE07190; WBGene00018088; WP:CE07190 WormBase description: synbindin TRS23 family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F36H2.1 Aff_F36H2.1 P W All gene names: tat-5; F36H2.1; 1J812; CE34183; CE34184; CE39367; WBGene00009498; WP:CE34183; WP:CE34184; WP:CE39367 WormBase description: E1-E2 ATPase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F37C12.2 Aff_F37C12.2 P W All gene names: F37C12.2; 3I275; CE00741; WBGene00018150; WP:CE00741
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F37H8.1 Aff_F37H8.1 P W All gene names: lir-3; F37H8.1; 2L474; CE15994; NM_063994; WBGene00003046; WP:CE15994 WormBase description: lir-3 encodes a lin-26-related protein that shares a unique C2H2 motif together with lir-1, lir-2 and lin-26; contains a region rich in acidic residues suggesting that it may be a transcription factor. WormBase CDS description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F38A6.1 Aff_F38A6.1 P W All gene names: Ce-fkh-1; fkh-1; pha-4; F38A6.1; 5V229; CE15998; NM_075605; WBGene00004013; WP:CE15998 WormBase description: Fork head domain, eukaryotic transcription factors
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F39G3.3 Aff_F39G3.3 P W All gene names: F39G3.3; 5F211; CE33083; WBGene00018208; WP:CE33083
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F39H11.3 Aff_F39H11.3 P W All gene names: cdk-8; F39H11.3; 1J281; CE32409; NM_059956; WBGene00000409; WP:CE32409 WormBase description: cdk-8 encodes a member of the cyclin-dependent serine/threonine protein kinase family orthologous to human CDK8 (OMIM:603184) which functions in transcriptional regulation with the positive regulatory factor cyclin C, is associated with the RNA polymerase II holoenzyme, and may regulate gene-specific activators; CDK-8 also contains a glutamine/asparagine-rich domain; loss of cdk-8 function via RNA-mediated interference (RNAi) results in sterility in the injected hermaphrodite, suggesting that in C. elegans, CDK-8 may play a role in germ-line development. WormBase CDS description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, wt                               
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

F39H2.4 Aff_F39H2.4 P W All gene names: syp-3; F39H2.4; 1J240; CE17814; NM_059944; WBGene00006377; WP:CE17814
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, Fig2b shared                                   
                                              gemlines, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F40E10.6 Aff_F40E10.6 P W All gene names: F40E10.6; F40E10.6.1; F40E10.6.2; F40E10.6.3; CE31508; WBGene00009574; WP:CE31508; XP322
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F40F4.4 Aff_F40F4.4 P W All gene names: lbp-3; F40F4.4; CE30130; CE39932; NM_076155; WBGene00002255; WP:CE30130; WP:CE39932; XD877
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, Roy et al 2002                             
                                              S3 muscle genes, ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F40F9.7 Aff_F40F9.7 P W All gene names: F40F9.7; F40F9.7a.1; F40F9.7a.2; F40F9.7b.1; F40F9.7b.2; F40F9.7b.3; F40F9.7b.4; 5K213; CE05856; CE33580; WBGene00009584; WP:CE05856; WP:CE33580
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F41E6.9 Aff_F41E6.9 P W All gene names: F41E6.9; 5J86; CE10260; WBGene00018290; WP:CE10260
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F42A9.2 Aff_F42A9.2 P W All gene names: lin-49; F42A9.2; 4J389; CE07224; NM_069074; WBGene00003034; WP:CE07224 WormBase description: zinc-finger protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F42G8.11 Aff_F42G8.11 P W All gene names: sph-1; F42G8.11; 4I896; CE17070; NM_068959; WBGene00004979; WP:CE17070 WormBase description: sph-1 encodes a member of the synaptophysin/synaptoporin family that contains a MARVEL domain, a membrane-associating domain found in lipid-associating proteins, and contains a transmembrane domain. WormBase CDS description: synaptic vesicle channel protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

F42H11.2 Aff_F42H11.2 P W All gene names: lem-3; F42H11.2; F42H11.2.1; F42H11.2.2; 1K156; CE10332; NM_060138; WBGene00002276; WP:CE10332 WormBase description: ankyrin domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, GO                              
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F43G6.1 Aff_F43G6.1 P W All gene names: dna-2; F43G6.1; 2M71; CE02219; CE23725; NM_064114; NM_064115; WBGene00001016; WP:CE02219; WP:CE23725 WormBase description: dna-2 encodes the C. elegans ortholog of the yeast and vertebrate Dna2 replication helicases; by homology, DNA-2 is predicted to function as an endonuclease and an ATP-dependent helicase that is involved in DNA replication and repair; in C. elegans, DNA-2 activity is required maternally and zygotically to maintain normal rates of cell division and for proper germ-line, embryonic, and larval development; DNA-2 activity is temperature-sensitive: animals lacking DNA-2 at 16 degrees Celsius (C) are less severely affected than those at 20 or 25 degrees C; in the hermaphrodite gonad, DNA-2 localizes to nuclei of germ cells and developing oocytes, and expression continues in embryos up to the comma stage; DNA-2 then reappears at the L3 larval stage, and in L3 and L4 larvae is visible in the proliferating somatic cells of the uterus and spermatheca.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F43G6.7 Aff_F43G6.7 P W All gene names: F43G6.7; 2M101; CE02225; WBGene00009659; WP:CE02225
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F44D12.5 Aff_F44D12.5 P W All gene names: F44D12.5; 4K795; WBGene00009682
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F44E5.4 Aff_F44E5.4 P W All gene names: F44E5.4; F44E5.4.1; F44E5.4.2; 2M48; CE18679; WBGene00009691; WP:CE18679 WormBase description: Heat shock hsp70 proteins
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress, Lund                            
                                              et al 2002 Aging time course Fig2C heatshock, Reinke et                            
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, Romagnolo et al 2002                             
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F44E7.9 Aff_F44E7.9 P W All gene names: F44E7.9; 5G271; CE10396; WBGene00018431; WP:CE10396
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S5 genes                              
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

F45D11.10 Aff_F45D11_39.B P W All gene names: F45D11.10; 2B281; CE23733; WBGene00018456; WP:CE23733
F45E12.5 Aff_F45E12.4 P W All gene names: F45E12.5; F45E12.5b.1; F45E12.5b.2; 2H598; CE02741; CE32049; WBGene00018475; WP:CE02741; WP:CE32049
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F45H11.1 Aff_F45H11.1 P W All gene names: F45H11.1; 1K947; CE16055; CE38353; WBGene00009743; WP:CE16055; WP:CE38353 WormBase description: Zinc finger, C2H2 type
F46A9.6 Aff_C17E4.11 P W All gene names: mec-8; F46A9.6; F46A9.6.1; F46A9.6.2; F46A9.6.3; 1K18; CE08260; NM_060107; WBGene00003172; WP:CE08260 WormBase description: mecanosensory gene mec-8
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F46E10.2 Aff_F46E10.C P W All gene names: F46E10.2; F46E10.2.1; F46E10.2.2; F46E10.C; F46E10.H; F46E10.J; 5H1; CE20813; WBGene00018489; WP:CE20813
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Zhang et al 2002, T1 mec-3 dependent genes                              

F46F3.1 Aff_F46F3.1 P W All gene names: ceh-27; F46F3.1; 5M140; CE36695; NM_073551; WBGene00000449; WP:CE36695 WormBase description: ceh-27 encodes a homeodomain protein of the NK-2 class that contains Drosophila scarecrow and human NKX-2 (OMIM:606727); CEH-27 activity is essential for embryogenesis and appears to be required for maintaining hypodermal integrity during movement as embryos lacking CEH-27 burst at a breach in the ventral hypodermis upon commencement of muscle contractions; CEH-27 expression is first detected in the ~100-cell embryo in what appear to be MS-derived cells while in later embryos expression is seen in a number of cells in the anterior head region. WormBase CDS description: homeobox protein (NK-2 subfamily)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F47A4.2 Aff_F47A4.2 P W All gene names: dpy-22; mdt-12; psa-6; sop-1; F47A4.2; CE16058; NM_077244; WBGene00001081; WP:CE16058; XK430 WormBase description: dpy-22 encodes a broadly expressed protein, homologous to the human transcriptional mediator protein TRAP230, which is involved in WNT and RAS signaling, as well as in dosage compensation; DPY-22 has a C-terminal glutamine-rich domain that is dispensable for inhibition of RAS-dependent cell differentiation, but is required for inhibition of BAR-1-dependent gene expression.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen                                                                       

F47G4.2 Aff_F47G4.2 P W All gene names: F47G4.2; 1O670; CE19875; WBGene00009823; WP:CE19875 WormBase description: Leucine Rich Repeat (2 copies)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma                                     

F48E8.1 Aff_F48E8.1 P W All gene names: lon-1; F48E8.1; 3G567; CE01953; CE29046; CE30996; NM_065765; NM_065766; NM_171866; WBGene00003055; WP:CE01953; WP:CE29046; WP:CE30996 WormBase description: The lon-1 gene encodes a protein belonging to the PR-protein superfamily that is a target of DBL-1 (TGF-beta) signaling, and that regulates polyploidization and body length.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F49C12.9 Aff_F49C12.9 P W All gene names: F49C12.9; 4K80; CE10780; WBGene00009878; WP:CE10780
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

F52A8.5 Aff_F52A8.5 P W All gene names: F52A8.5; F52A8.5.1; F52A8.5.2; 1H922; CE05912; WBGene00009918; WP:CE05912 WormBase description: F52A8.5 is orthologous to the human gene GLYCINE CLEAVAGE SYSTEM PROTEIN H (GCSH; OMIM:238330), which when mutated leads to glycine encephalopathy. WormBase CDS description: glycine cleavage system H protein like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F52E4.7 Aff_F52E4.7 P W All gene names: F52E4.7; CE10836; WBGene00018703; WP:CE10836; XD714
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F52F12.7 Aff_F52F12.7 P W All gene names: F52F12.7; 1K507; CE10852; WBGene00009940; WP:CE10852 WormBase description: F52F12.7 is orthologous to the human gene STEROIDOGENIC ACUTE REGULATORY PROTEIN (STAR; OMIM:600617), which when mutated leads to disease. WormBase CDS description: steroidogenic acute regulatory protein like
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

F52G3.5 Aff_F52G3.5 P W All gene names: F52G3.5; CE35720; WBGene00018713; WP:CE35720; XR588
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F53E10.6 Aff_F53E10.6 P W All gene names: F53E10.6; F53E10.6.1; F53E10.6.2; 5D80; CE10930; WBGene00018762; WP:CE10930
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F53G2.1 Aff_F53G2.1 P W All gene names: F53G2.1; 2C783; CE10990; WBGene00018766; WP:CE10990
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F54A5.1 Aff_F54A5.E P W All gene names: F54A5.1; F54A5.1.1; F54A5.1.2; F54A5.E; 1B465; CE20859; WBGene00018786; WP:CE20859
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster B, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F54B11.3 Aff_F54B11.3 P W All gene names: unc-84; F54B11.3; CE27761; CE28236; WBGene00006816; WP:CE27761; WP:CE28236; XO207 WormBase description: unc-84 encodes a transmembrane protein that contains a SUN domain with homology to S. pombe Sad1 and affects nuclear migration and anchoring of various cell types together with UNC-83 and ANC-1, thereby affecting coordinated locomotion, vulval formation, and egg laying; UNC-84 is localized to the nuclear envelope and requires LMN-1 for this localization, and it is expressed in the nuclear envelope of essentially all adult and embryonic cells.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F54C9.1 Aff_F54C9.1 P W All gene names: iff-2; F54C9.1; F54C9.1.1; F54C9.1.2; F54C9.1.3; 2I850; CE02249; NM_063406; WBGene00002065; WP:CE02249 WormBase description: initiation factor 5A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B                               

F54C9.9 Aff_F54C9.9 P W All gene names: F54C9.9; 2I871; CE20865; WBGene00010044; WP:CE20865
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen                                           

F54F2.2 Aff_F54F2.2 P W All gene names: zfp-1; zpf-1; F54F2.2; F54F2.2a.1; F54F2.2a.2; F54F2.2a.3; F54F2.2c.1; F54F2.2c.2; 3J897; CE25003; CE26933; CE33653; WBGene00006975; WP:CE25003; WP:CE26933; WP:CE33653 WormBase description: zfp-1 encodes a leucine zipper, zinc finger, and PHD/LAP domain (plant homeodomain/leukemia-associated protein)-containing protein homologous to human AF10 (OMIM:602409, which is involved in chromosomal translocations associated with acute leukemia); loss of zfp-1 activity via RNA-mediated interference (RNAi) results in suppression of RNAi, suggesting that ZFP-1 plays a role in gene silencing; based on sequence similarity, ZFP-1 is predicted to associate with chromatin.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F55A12.8 Aff_F55A12.8 P W All gene names: F55A12.8; F55A12.8.1; F55A12.8.2; F55A12.8.3; 1F918; CE11131; WBGene00018866; WP:CE11131
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes                                                   

F55A8.1 Aff_F55A8.1 P W All gene names: egl-18; elt-5; pvl-3; F55A8.1; F55A8.1.1; F55A8.1.2; F55A8.1.3; 4C681; CE28339; NM_067742; WBGene00001186; WP:CE28339 WormBase description: egl-18 encodes a member of the GATA-family of transcription factors that affects cell migration, cell fate specification; expressed in the head, in hypodermal seam cells, VC neurons, and vulval precursor cells. WormBase CDS description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F55D12.1 Aff_F55D12.1 P W All gene names: F55D12.1; 1I459; CE05955; WBGene00010110; WP:CE05955
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

F55F3.1 Aff_F55F3.1 P W All gene names: aakb-1; F55F3.1; F55F3.1.1; F55F3.1.2; CE18744; WBGene00010115; WP:CE18744; XO377
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Golden et al 2004, N2 vs daf-2 age                            
                                              different gene, McCarroll et al 2004  SFig1-4 conserved                            
                                              w/ Drosoph, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol                                                                        

F55F8.5 Aff_F55F8.5 P W All gene names: tag-345; F55F8.5; F55F8.5.1; F55F8.5.2; 1G224; CE11196; WBGene00018893; WP:CE11196
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S4 Early genes,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

F56A11.3 Aff_F56A11.3 P W All gene names: efn-4; mab-26; F56A11.3; 4B319; CE29503; NM_067546; WBGene00001165; WP:CE29503 WormBase description: efn-4 encodes a member of the ephrin family of ligands that affects neuroblast migrations during closure of the ventral gastrulation cleft and subsequent epidermal morphogenesis, possibly functioning independently of EFN-1, EFN-2, EFN-3, and the VAB-1 receptor during morphogenesis; can interact with VAB-1 in vitro, and is expressed in neural and epidermal precursors at the 100-cell stage, in head neurons, pharyngeal cells, lateral and tail neurons, and in the ectoderm during epidermal enclosure.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order                                  

F56C11.6 Aff_F56C11.6 P W All gene names: F56C11.6; 1A647; CE17905; CE33402; WBGene00018958; WP:CE17905; WP:CE33402 WormBase description: carboxylesterases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt herm                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster D, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F56H1.3 Aff_C04F1.3 P W All gene names: F56H1.3; 1G306; CE17914; WBGene00018994; WP:CE17914
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

F57B9.1 Aff_F57B9.1 P W All gene names: F57B9.1; 3I53; CE01335; WBGene00018996; WP:CE01335 WormBase description: PNP/PMP oxidase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Shen et al 2005  T1 hif-1 depend hypoxia,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F57B9.6 Aff_F57B9.6 P W All gene names: inf-1; F57B9.6; F57B9.6a.1; F57B9.6a.2; 3I21; CE01341; CE38524; Ce1F; CeIF; NM_066108; WBGene00002083; WP:CE01341; WP:CE38524 WormBase description: inf-1 encodes a protein with high similarity to eukaryotic initiation factor 4A.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F57C12.5 Aff_F57C12.5 P W All gene names: mrp-1; sdf-14; F57C12.5; F57C12.5d.1; F57C12.5d.2; F57C12.5d.3; CE25015; CE29412; CE31189; CE34565; CE39102; NM_075721; WBGene00003407; WP:CE25015; WP:CE29412; WP:CE31189; WP:CE34565; WP:CE39102; XB196 WormBase description: ABC transporter
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F57F4.2 Aff_F57F4.2 P W All gene names: F57F4.2; 5G868; CE11340; WBGene00019016; WP:CE11340
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

F58D2.1 Aff_F58D2.1 P W All gene names: F58D2.1; 4N951; CE18782; WBGene00010240; WP:CE18782 WormBase description: C.elegans ZYG-11 protein like
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

F58E1.8 Aff_F58E1.8 P W All gene names: fbxb-18; F58E1.8; 2B974; CE11386; WBGene00019039; WP:CE11386 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains leucine-rich repeats.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F58G6.1 Aff_F58G6.1 P W All gene names: F58G6.1; F58G6.1.1; F58G6.1.2; 4K410; CE03428; WBGene00010272; WP:CE03428 WormBase description: amphiphysin like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F58G6.5 Aff_F58G6.5 P W All gene names: nhr-34; F58G6.5; 4K430; CE27764; CE35564; CE35565; NM_069315; NM_171412; WBGene00003627; WP:CE27764; WP:CE35564; WP:CE35565 WormBase description: nhr-34 encodes a member of the nuclear receptor superfamily; phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans; the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known.
F58H1.5 Aff_F58H1.5 P W All gene names: F58H1.5; F58H1.5.1; F58H1.5.2; 5M441; CE06029; WBGene00010288; WP:CE06029
F59D6.1 Aff_F59D6.1 P W All gene names: F59D6.1; 5D527; CE11476; WBGene00019103; WP:CE11476
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

H12C20.2 Aff_F38B7.7 P W All gene names: pms-2; H12C20.2; 5M48; CE18807; CE19915; NM_073532; NM_073533; WBGene00004064; WP:CE18807; WP:CE19915 WormBase description: DNA mismatch repair protein (PMS2)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen                                              

H12D21.8 Aff_H12D21.8 P W All gene names: H12D21.8; 5P385; CE19921; WBGene00010384; WP:CE19921
H20J04.6 Aff_H20J04_717.A P W All gene names: H20J04.6; H20J04.B; 2E613; CE20973; WBGene00019221; WP:CE20973
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

H28G03.1 Aff_H28G03.1 P W All gene names: H28G03.1; H28G03.1a.1; H28G03.1a.2; H28G03.1c.1; H28G03.1c.2; CE30079; CE30080; CE31190; WBGene00019249; WP:CE30079; WP:CE30080; WP:CE31190; XF837 WormBase description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

H32C10.2 Aff_H32C10.B P W All gene names: H32C10.2; 4G697; CE21004; WBGene00019256; WP:CE21004
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

K01D12.12 Aff_K01D12.12 P W All gene names: cdr-6; K01D12.12; 5M892; CE06051; NM_073712; WBGene00010471; WP:CE06051 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K01G5.1 Aff_K01G5.1 P W All gene names: tag-331; K01G5.1; 3K846; 3L846; CE26718; WBGene00010476; WP:CE26718 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

K01G5.6 Aff_K01G5.6 P W All gene names: rib-2; K01G5.6; 3L835; CE16196; NM_066967; WBGene00004361; WP:CE16196 WormBase description: The rib-2 gene encodes an ortholog of human EXT2, which when mutated leads to hereditary multiple exostoses, type II (OMIM:133701). WormBase CDS description: MULTIPLE EXOSTOSES HOMOLOG 2
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K01H12.1 Aff_K01H12.1 P W All gene names: K01H12.1; 4K471; CE03453; WBGene00010484; WP:CE03453 WormBase description: K01H12.1 encodes a small protein conserved in diverse eukaryotes, with a CSL motif (a probable zinc finger, sometimes found associated with the N-terminal domain of DnaJ protein); K01H12.1 is probably a small subunit or ancillary protein of RNA polymerase II Elongator or of a hypothetical diphthamide synthase complex; K01H12.1 is orthologous to to mammalian DESR1 (diphtheria toxin and Pseudomonas exotoxin A sensitivity required gene 1) and S. cerevisiae KTI11; DESR1, and probably KTI11, enables the first step in posttranslational modification of histidine to dipthamide; K01H12.1 has no obvious function in mass RNAi assays.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, McCarroll et al 2004  SFig1-4 conserved w/                                  
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K02B2.1 Aff_K02B2.1 P W All gene names: K02B2.1; 4G707; CE30082; WBGene00019295; WP:CE30082 WormBase description: 6-phosphofructo-2-kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol                                                        

K02E10.2 Aff_K02E10.2 P W All gene names: hid-1; K02E10.2; CE04694; CE34327; NM_076053; WBGene00001844; WP:CE04694; WP:CE34327; XD111
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

K02G10.1 Aff_K02G10.1 P W All gene names: K02G10.1; CE35736; WBGene00019344; WP:CE35736; XF327
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K07A1.9 Aff_K07A1.9 P W All gene names: K07A1.9; 1K188; CE32465; CE32466; CE32467; WBGene00010615; WP:CE32465; WP:CE32466; WP:CE32467 WormBase description: arginyl-tRNA protein transferase like (truncated)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K07B1.7 Aff_K07B1.7 P W All gene names: K07B1.7; 5J826; CE29509; CE38846; WBGene00019467; WP:CE29509; WP:CE38846
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Reinke et al 2004, intrinsic,                                  
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K08H10.9 Aff_K08H10.9 P W All gene names: K08H10.9; 5K473; CE18881; WBGene00010699; WP:CE18881
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

K08H2.6 Aff_K08H2.6 P W All gene names: hpl-1; K08H2.6; CE06164; NM_077798; WBGene00001995; WP:CE06164; XN865 WormBase description: The hpl-1 gene encodes a homolog of heterochromatin protein 1 (HP1) that acts to support the activity of HPL-2 in promoting germline function, but that by itself is dispensable for any obvious function in vivo. WormBase CDS description: murine modifier 2 protein like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

K09C4.8 Aff_K09C4.8 P W All gene names: sul-1; tag-37; K09C4.8; CE04736; NM_076159; WBGene00006308; WP:CE04736; XD886 WormBase description: sul-1 encodes a member of the sulfatase family. WormBase CDS description: sulfatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT, Wang et al 2003  S4 TransientList, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K09E9.3 Aff_K09E9.3 P W All gene names: K09E9.3; CE12014; WBGene00010726; WP:CE12014; XQ232
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

K10B3.1 Aff_K10B3.1 P W All gene names: K10B3.1; CE07364; CE37127; WBGene00019609; WP:CE07364; WP:CE37127; XD755
K10B3.5 Aff_K10B3.5 P W All gene names: K10B3.5; CE07368; WBGene00019611; WP:CE07368; XD722
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

K10H10.3 Aff_K10H10.3 P W All gene names: dhs-8; K10H10.3; 2O785; CE16253; WBGene00000972; WP:CE16253 WormBase description: Alcohol/other dehydrogenases, short chain type
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

K11B4.1 Aff_K11B4.1 P W All gene names: K11B4.1; K11B4.1.1; K11B4.1.2; 1P387; CE29597; WBGene00010766; WP:CE29597
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

K11G12.5 Aff_K11G12.5 P W All gene names: K11G12.5; CE02827; WBGene00019656; WP:CE02827; XH342 WormBase description: mitochondrial 2-oxoglutartae
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

K12B6.1 Aff_K12B6.1 P W All gene names: K12B6.1; 5G787; CE12164; WBGene00019666; WP:CE12164
M01F1.6 Aff_M01F1.6 P W All gene names: M01F1.6; M01F1.6.1; M01F1.6.2; 3E601; CE37982; WBGene00010812; WP:CE37982
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M03A8.1 Aff_M03A8.1 P W All gene names: dhs-28; M03A8.1; CE04770; NM_076745; WBGene00000991; WP:CE04770; XH437 WormBase description: dhs-28 encodes an ortholog of human 17-BETA-HYDROXYSTEROID DEHYDROGENASE 4 (HSD17B4; OMIM:601860, mutated in D-bifunctional protein deficiency), which contains a C-terminal SCP-2 sterol transfer domain; the deletion allele dhs-28(ok450) is superficially wild-type. WormBase CDS description: alcohol dehydrogenase; non-specific lipid transfer protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

M03A8.2 Aff_M03A8.2 P W All gene names: M03A8.2; CE30679; WBGene00019748; WP:CE30679; XH435
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M03F4.7 Aff_M03F4.7 P W All gene names: M03F4.7; CE12368; CE34060; WBGene00019760; WP:CE12368; WP:CE34060; XF588 WormBase description: calcium binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Wang et al 2003  S4 Climbing, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Zhang et al 2002, T1                                
                                              mec-3 dependent genes                                                              

M04B2.4 Aff_M04B2.4 P W All gene names: M04B2.4; M04B2.4.1; M04B2.4.2; 4M284; CE12390; WBGene00010847; WP:CE12390
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

M04B2.5 Aff_M04B2.5 P W All gene names: M04B2.5; 4M273; CE36554; NM_069769; WBGene00006678; WP:CE36554 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

M04F3.4 Aff_M04F3.4 P W All gene names: M04F3.4; 1F340; CE12418; WBGene00019770; WP:CE12418 WormBase description: calcium binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M117.5 Aff_M117.5 P W All gene names: fbxb-4; M117.5; 4M595; CE18086; WBGene00010921; WP:CE18086 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

M142.8 Aff_M142.5 P W All gene names: M142.8; 3M25; CE37540; WBGene00043057; WP:CE37540
R02D3.1 Aff_R02D3.1 P W All gene names: R02D3.1; 4B3; CE18095; WBGene00019819; WP:CE18095 WormBase description: The R02D3.1 gene encodes an ortholog of the human gene ALPHA-AMINOADIPATE SEMIALDEHYDE SYNTHASE (AASS; OMIM:605113), which when mutated leads to hyperlysinemia (OMIM:238700). WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, mixed sperm soma, Reinke et al 2004, list of                                 
                                              genes in cluster C, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

R04A9.4 Aff_R04A9.4 P W All gene names: ife-2; R04A9.4; CE04791; NM_075693; WBGene00002060; WP:CE04791; XB2 WormBase description: The ife-2 gene encodes a member of the Initiation Factor 4E (eIF4E) family. WormBase CDS description: eukaryotic initiation factor 4E (EIF-4E)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

R04B3.2 Aff_R04B3.2 P W All gene names: R04B3.2; CE28745; WBGene00019867; WP:CE28745; XD90 WormBase description: The R04B3.2 gene encodes an ortholog of the human gene LYSOSOMAL GLYCOSYLASPARAGINASE (AGA; OMIM:208400), which when mutated leads to aspartylglucosaminuria (OMIM:208400). WormBase CDS description: glycosylasparaginase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R05D11.6 Aff_R05D11.6 P W All gene names: R05D11.6; 1J173; CE32473; WBGene00011034; WP:CE32473
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen                                              

R05D3.9 Aff_R05D3.9 P W All gene names: R05D3.9; 3J452; CE31049; WBGene00019882; WP:CE31049
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R05F9.9 Aff_R05F9.9 P W All gene names: R05F9.9; 2F190; CE04812; WBGene00019892; WP:CE04812
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

R06A4.8 Aff_R06A4.8 P W All gene names: R06A4.8; 2O638; CE18115; WBGene00011050; WP:CE18115 WormBase description: R06A4.8 is orthologous to the human gene GLYCOGEN DEBRANCHING ENZYME ISOFORM 6 (AGL; OMIM:232400), which when mutated leads to glycogen storage disease, type III. WormBase CDS description: Alpha amylase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

R07B5.9 Aff_R07B5.8 P W All gene names: R07B5.9; CE31575; WBGene00011086; WP:CE31575
R07C3.2 Aff_R07C3.2 P W All gene names: R07C3.2; 2B233; CE12524; WBGene00019918; WP:CE12524
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

R07C3.5 Aff_R07C3.5 P W All gene names: R07C3.5; 2B217; CE12530; WBGene00019921; WP:CE12530
R08C7.3 Aff_R08C7.3 P W All gene names: htz-1; R08C7.3; R08C7.3.1; R08C7.3.2; R08C7.3.3; 4F211; CE07426; WBGene00019947; WP:CE07426 WormBase description: histone H2A variant
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, GO categories,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

R08D7.2 Aff_R08D7.2 P W All gene names: R08D7.2; 3K59; CE00290; WBGene00011143; WP:CE00290
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

R08E5.3 Aff_R08E5.3 P W All gene names: R08E5.3; R08E5.3.1; R08E5.3.2; 5E251; CE12576; WBGene00019963; WP:CE12576
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R09H10.3 Aff_R09H10.3 P W All gene names: R09H10.3; 4L369; CE34083; WBGene00011181; WP:CE34083 WormBase description: R09H10.3 is orthologous to the human gene TRANSTHYRETIN (PREALBUMIN, AMYLOIDOSIS TYPE I) (TTR; OMIM:176300), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R10E11.3 Aff_R10E11.3 P W All gene names: R10E11.3; R10E11.3a.1; R10E11.3a.2; 3K867; CE23922; CE23923; WBGene00011216; WP:CE23922; WP:CE23923 WormBase description: Ubiquitin-specifc processing protease
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen                                           

R11E3.6 Aff_R11E3.6 P W All gene names: eor-1; R11E3.6; R11E3.6.1; R11E3.6.2; R11E3.6.3; 4F558; CE19548; NM_068244; WBGene00001324; WP:CE19548 WormBase description: eor-1 encodes an ortholog of the human BTB/zinc-finger transcription factor PLZF (OMIM:176797), which is is found as a retinoic acid receptor alpha (RARA) fusion in acute promyelocytic leukemia (APL); EOR-1 positively regulates RAS/RAF-mediated signalling during excretory system development, as well as RAS/RAF- and WNT-mediated signalling during P12 fate specification; EOR-1 may function with EOR-2 and Hox genes to control the expression of Ras- and Wnt-responsive genes. WormBase CDS description: zinc-finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 daf-16 Resveratrol                                                        

R12C12.1 Aff_R12C12.1 P W All gene names: R12C12.1; R12C12.1a.1; R12C12.1a.2; 2G343; CE02846; CE33434; WBGene00020022; WP:CE02846; WP:CE33434 WormBase description: R12C12.1 is orthologous to human GLYCINE DECARBOXYLASE (GLDC; OMIM:238300), which when mutated leads to glycine encephalopathy.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster C, Reinke et al                               
                                              2004, mixed sperm soma, Reinke et al 2004, GO                                      
                                              categories, Reinke et al 2004, herm soma enriched                                  
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

R12E2.12 Aff_R12E2.12 P W All gene names: R12E2.12; 1E742; CE33159; WBGene00020037; WP:CE33159
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R13G10.2 Aff_R13G10.2 P W All gene names: amx-1; R13G10.2; 3E915; CE25088; NM_065371; WBGene00000137; WP:CE25088 WormBase description: monoamine oxidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

R13H4.4 Aff_R13H4.4 P W All gene names: hmp-1; R13H4.4; 5M331; CE25089; NM_073584; WBGene00001978; WP:CE25089 WormBase description: alpha-catenin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen                                                    

T01B11.2 Aff_T01B11.2 P W All gene names: T01B11.2; 4J214; CE12894; CE33686; WBGene00020139; WP:CE12894; WP:CE33686 WormBase description: aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, Reinke et al 2004, fem3 enriched                                
                                              genes, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T01H10.8 Aff_T01H10.8 P W All gene names: T01H10.8; CE03607; WBGene00011361; WP:CE03607; XM748 WormBase description: Yeast hypothetical protein YCR32 like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T02G6.5 Aff_T02G6.5 P W All gene names: T02G6.5; 1M411; CE18176; WBGene00011388; WP:CE18176 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

T03E6.7 Aff_T03E6.7 P W All gene names: cpl-1; T03E6.7; T03E6.7.1; T03E6.7.2; 5R74; CE16333; NM_074798; WBGene00000776; WP:CE16333 WormBase description: cpl-1 encodes a member of the cathepsin L-like cysteine protease family required for embryonic viability and normal growth; expressed in eggshells and throughout early embryos, accumulates in intestinal cells during late embryogenesis, and expressed in the cuticle, gonad, and pharynx later in development. WormBase CDS description: cathepsin-like protease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, fem3 enriched                                 
                                              genes, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

T03F1.3 Aff_T03F1.3 P W All gene names: T03F1.3; 1E435; CE13100; WBGene00020185; WP:CE13100 WormBase description: T03F1.3 is orthologous to the human gene PHOSPHOGLYCERETE KINASE 1 (PGK1; OMIM:311800), which when mutated leads to hemolytic anemia and neurologic disturbances. WormBase CDS description: phosphoglycerate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T04D1.4 Aff_T04D1.4 P W All gene names: tag-192; T04D1.4; 1F262; CE18196; WBGene00007053; WBGene00020213; WP:CE18196 WormBase description: helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

T05D4.1 Aff_T05D4.1 P W All gene names: T05D4.1; T05D4.1.1; T05D4.1.2; 3O652; CE16341; WBGene00011474; WP:CE16341 WormBase description: T05D4.1 is orthologous to the human gene ALDOLASE A, FRUCTOSE-BISPHOSPHATE (ALDOA; OMIM:103850), which when mutated leads to aldolase A deficiency. WormBase CDS description: Fructose-bisphosphate aldolase class-I
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Reinke et al 2004, GO categories, Reinke                             
                                              et al 2004, IVb male soma enriched genes, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

T05E11.3 Aff_T05E11.3 P W All gene names: T05E11.3; T05E11.3.1; T05E11.3.2; 4L887; CE06362; WBGene00011480; WP:CE06362 WormBase description: endoplasmin precursor (GRP94)
                                              
Member of lists (Publications lists):
                                              Lund et al 2002 Aging time course                                 
                                              Fig2C heatshock, McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Romagnolo et al 2002  Fig2a heat shock,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T05F1.1 Aff_T05F1.1 P W All gene names: T05F1.1; T05F1.1.1; T05F1.1.2; 1K197; CE13267; WBGene00011488; WP:CE13267
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

T07C4.2 Aff_T07C4.2 P W All gene names: tbx-8; T07C4.2; 3L437; CE36891; NM_066886; WBGene00006545; WP:CE36891 WormBase description: Brachyury
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes                                 

T07C4.6 Aff_T07C4.6 P W All gene names: tbx-9; T07C4.6; T07C4.6.1; T07C4.6.2; 3L430; CE36892; NM_066885; WBGene00006546; WP:CE36892 WormBase description: Brachyury
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E                                      

T07D3.7 Aff_T07D3.7 P W All gene names: alg-2; T07D3.7; TO7D3.7; 2B167; CE13367; CE32063; NM_061436; NM_182192; WBGene00000106; WP:CE13367; WP:CE32063 WormBase description: alg-2 encodes a PAZ and PIWI-domain containing protein that is a member of the highly conserved eukaryotic RDE-1/AGO1/PIWI family of proteins that regulate posttranscriptional gene silencing (PTGS); ALG-2 functions with ALG-1 to control specific developmental timing events by positively regulating expression of small temporal RNAs (stRNAs) encoded by lin-4 and let-7; ALG-2 and ALG-1 are also required for RNAi in the germline, although they are not required for RNAi in the soma.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T08B2.8 Aff_T08B2.8 P W All gene names: T08B2.8; 1G786; CE13433; WBGene00020348; WP:CE13433
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T08D10.2 Aff_T08D10.2 P W All gene names: T08D10.2; CE33174; WBGene00011615; WP:CE33174; XM569 WormBase description: T08D10.2 encodes an ortholog of the human histone demethylase LSD1 (KIAA0601), and a paralog of C. elegans SPR-5; similar histone demethylase homologs are found in human, mouse, Drosophila, fission yeast, and Arabidopsis; T08D10.2 is predicted to demethylate histone H3 lysine 4 residues and act as a transcriptional corepressor. WormBase CDS description: corticosteroid-binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol                                                                 

T08E11.5 Aff_T08E11.5 P W All gene names: T08E11.5; 2C113; CE33448; WBGene00020361; WP:CE33448
T10B5.8 Aff_T10B5.8 P W All gene names: T10B5.8; 5C323; CE18238; WBGene00020394; WP:CE18238 WormBase description: NADH oxidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Reinke et al 2004, GO categories, Reinke                             
                                              et al 2004, IVb male soma enriched genes, Wang et al                               
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              Dauer Enriched, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

T12F5.1 Aff_T12F5.1 P W All gene names: T12F5.1; 1E311; CE13595; WBGene00020466; WP:CE13595
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt male                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T13F2.3 Aff_T13F2.3 P W All gene names: pis-1; T13F2.3; 4K558; CE13623; CE23980; NM_069347; NM_069348; WBGene00004031; WP:CE13623; WP:CE23980 WormBase description: pis-1 encodes an ortholog of mammalian Pax transcription activation domain interacting protein PTIP; PIS-1 has an N-terminal glutamine/asparagine-rich domain and four C-terminal BRCT domains, and is dispensable for obvious functions in mass RNAi assays; mammalian PTIP binds to the activation domain of Pax2 and other Pax proteins, and colocalizes with Pax2 to actively expressed chromatin, and appears to be required for embryonic mitosis (perhaps because of a link between BRCT domains and DNA repair).
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T14G10.5 Aff_T14G10.5 P W All gene names: T14G10.5; T14G10.5a.1; T14G10.5a.2; 4K919; CE06451; CE39281; WBGene00011775; WP:CE06451; WP:CE39281 WormBase description: T14G10.5 encodes a gamma subunit of the coatomer (COPI) complex; in mass RNAi assays, T14G10.5 is required for locomotion, fertility, normally rapid growth, and general health.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

T16G1.10 Aff_T16G1.10 P W All gene names: pqn-68; T16G1.10; 5N431; CE20080; NM_073839; WBGene00004151; WP:CE20080 WormBase description: The protein product of this gene was predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS72 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

T17E9.2 Aff_T17E9.2 P W All gene names: T17E9.2; T17E9.2c.1; T17E9.2c.2; 3H204; CE01406; CE28669; CE31611; WBGene00020549; WP:CE01406; WP:CE28669; WP:CE31611
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

T18H9.6 Aff_T18H9.6 P W All gene names: mdt-27; T18H9.6; 5J690; CE04974; NM_072985; WBGene00007023; WP:CE04974
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

T19E7.3 Aff_T19E7.3 P W All gene names: bec-1; T19E7.3; T19E7.3.1; T19E7.3.2; 4G426; CE27592; NM_068443; WBGene00000247; WP:CE27592 WormBase description: bec-1 encodes a coiled-coil protein that is orthologous to the yeast and mammalian autophagy proteins Apg6/Vps30p/beclin1; bec-1 activity is required for normal dauer morphogenesis and survival of dauer larvae, as well as for adult life span extension of daf-2(e1370) mutants at 15 degrees; in addition, loss of bec-1 activity by large-scale RNAi indicates that BEC-1 is required for normal growth rates, movement, and vulval morphogenesis; by homology, BEC-1 may be part of a Class III phosphatidylinositol 3-kinase complex that plays a role in localizing autophagy proteins to preautophagosomal structures, and overexpression of C. elegans bec-1 in S. cerevisiae APG6/VPS30 mutants can rescue associated autophagy defects; a bec-1::GFP reporter fusion is expressed in the hypodermis, intestine, nervous system, pharynx, and reproductive organs, all tissues that are remodelled during dauer larval development.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

T20B12.3 Aff_T20B12.3 P W All gene names: T20B12.3; T20B12.3.1; T20B12.3.2; 3I473; CE01409; WBGene00020601; WP:CE01409
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S4 Early genes,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T20G5.10 Aff_T20G5.10 P W All gene names: T20G5.10; 3L300; CE00629; WBGene00011872; WP:CE00629
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T22B7.3 Aff_T22B7.2 P W All gene names: T22B7.3; CE31242; WBGene00020672; WP:CE31242; XG273
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, IVb male soma enriched genes, Romagnolo et al                             
                                              2002  Fig3b Unkown                                                                 

T23B12.3 Aff_T23B12.3 P W All gene names: T23B12.3; 5I947; CE14030; WBGene00020718; WP:CE14030 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

T23C6.1 Aff_T23C6.1 P W All gene names: mdt-1.2; T23C6.1; CE07526; NM_078377; WBGene00007011; WP:CE07526; XR767
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T23C6.4 Aff_T23C6.2 P W All gene names: T23C6.4; CE07529; WBGene00020726; WP:CE07529; XR762
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

T23D8.1 Aff_T23D8.1 P W All gene names: mom-5; T23D8.1; 1K545; CE14048; NM_060234; WBGene00003397; WP:CE14048 WormBase description: Drosophila tissue polarity protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, list of genes in cluster E                                             

T23F11.4 Aff_T23F11.4 P W All gene names: T23F11.4; 3F754; CE01097; WBGene00011956; WP:CE01097 WormBase description: Zinc finger protein (C2H2 type)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T23F2.5 Aff_T23F2.5 P W All gene names: T23F2.5; CE05000; WBGene00020738; WP:CE05000; XG134
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

T23F6.4 Aff_T23F6.4 P W All gene names: rbd-1; T23F6.4; T23F6.4.1; T23F6.4.2; 4N493; CE18963; NM_070031; WBGene00004315; WP:CE18963 WormBase description: RNA recognition motif. (aka RRM, RBD, or RNP domain) (6 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

T23G4.1 Aff_T23G4.1 P W All gene names: tlp-1; T23G4.1; T23G4.1.1; T23G4.1.2; 4O466; CE16453; NM_070246; WBGene00006580; WP:CE16453 WormBase description: The tlp-1 gene encodes a C2H2-type zinc finger of the Sp-1-like protein family, which is required for normal asymmetry in the divisions of the T.p and T.ap cells; such asymmetry, in turn, is required for normal, rounded tail morphology in adult males.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T24D1.4 Aff_T24D1.4 P W All gene names: tag-179; T24D1.4; 1K538; CE14168; WBGene00007043; WBGene00011987; WP:CE14168 WormBase description: Yeast DIE2 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

T25B9.8 Aff_T25B9.8 P W All gene names: T25B9.8; 4L532; CE32940; WBGene00012014; WP:CE32940 WormBase description: lin-15a like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T25D3.2 Aff_T25D3.2 P W All gene names: T25D3.2; 2A446; CE19599; WBGene00020796; WP:CE19599
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Romagnolo et al 2002  Fig3b others,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T25G12.4 Aff_T25G12.4 P W All gene names: rab-6.2; T25G12.4; CE07541; NM_078389; WBGene00004270; WP:CE07541; XR837 WormBase description: rab-6.2 encodes a small, monomeric Rab GTPase that is most closely related to the Drosophila Rab6 and mammalian Rab6a GTPases; by homology, RAB-6.2 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis; however, as loss of rab-6.2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-6.2 in C. elegans development and/or behavior is not yet known. WormBase CDS description: ras-related protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

T26C11.5 Aff_T26C11.5 P W All gene names: ceh-41; T26C11.5; CE05024; NM_075939; WBGene00000462; WP:CE05024; XC466 WormBase description: ceh-41 encodes a a ONECUT class CUT homeobox protein with a single N-terminal OCAM domain; the OCAM domain is a nematode-specific motif conserved between CEH-21, CEH-41, and T02B5.2; ceh-41 is one of three nematode-specific ONECUT genes in a cluster with ceh-21 and ceh-39; ceh-41 has no obvious function in mass RNAi assays. WormBase CDS description: paired-type homeobox protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              Romagnolo et al 2002  Fig3b TF, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S5 genes common                            
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

T26C11.6 Aff_T26C11.6 P W All gene names: ceh-21; T26C11.6; CE29823; NM_075940; WBGene00000444; WP:CE29823; XC468 WormBase description: ceh-21 encodes a a ONECUT class CUT homeobox protein with a single N-terminal cut domain and an OCAM domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; the OCAM domain is a nematode-specific motif conserved between CEH-21, CEH-41, and T02B5.2; ceh-21 is one of three nematode-specific ONECUT genes in a cluster with ceh-39 and ceh-41; CEH-21 may be required for muscle formation and differentiation, and is expressed in muscle precursor cells and differentiated gut cells; ceh-21 has no obvious function in mass RNAi assays. WormBase CDS description: homeobox
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T26G10.1 Aff_T26G10.1 P W All gene names: T26G10.1; 3K494; CE00337; WBGene00012059; WP:CE00337 WormBase description: RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

T27D12.1 Aff_T27D12.1 P W All gene names: T27D12.1; T27D12.1.1; T27D12.1.2; T27D12.1.3; 2M135; CE06516; WBGene00012085; WP:CE06516 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

T27F6.5 Aff_T27F6.5 P W All gene names: prs-2; T27F6.5; T27F6.5.1; T27F6.5.2; 1N81; CE16514; NM_060767; WBGene00004190; WP:CE16514 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated, Wang et al 2003  S5 genes common                             
                                              to feeding ANOVA, Wang et al 2003  S3  genes pass                                  
                                              one-way ANOVA                                                                      

T28B8.1 Aff_T28B8.1 P W All gene names: T28B8.1; T28B8.1.1; T28B8.1.2; 1I711; CE14329; WBGene00012113; WP:CE14329
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Romagnolo et al 2002  Fig3b Unkown,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T28C6.4 Aff_T28C6.4 P W All gene names: T28C6.4; 4J588; NM_069125; WBGene00000691 WormBase description: cuticle collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

T28F2.2 Aff_T28F2.2 P W All gene names: T28F2.2; 1E207; CE31075; WBGene00020901; WP:CE31075
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W01G7.5 Aff_W01G7.5 P W All gene names: lem-2; W01G7.5; 2O355; CE20129; NM_064543; WBGene00002275; WP:CE20129
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes                                                  

W03D8.2 Aff_W03D8.2 P W All gene names: W03D8.2; 1D368; CE18322; WBGene00020985; WP:CE18322 WormBase description: ser/thr protein phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster D, Reinke et al 2004, fem3                                
                                              enriched genes                                                                     

W04C9.4 Aff_W04C9.4 P W All gene names: W04C9.4; 1A935; CE18335; WBGene00021026; WP:CE18335
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes                                             

W04D2.1 Aff_W04D2.1 P W All gene names: atn-1; W04D2.1; 5M963; CE06539; CE21256; NM_073726; NM_073727; WBGene00000228; WP:CE06539; WP:CE21256 WormBase description: atn-1 encodes an alpha-actinin homolog.
W04D2.5 Aff_W04D2.5 P W All gene names: W04D2.5; W04D2.5.1; W04D2.5.2; 5M974; CE06542; WBGene00012244; WP:CE06542 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: mitochondrial ribosomal protein S11 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

W05H7.3 Aff_W05H7.3 P W All gene names: sedl-1; W05H7.3; CE14652; NM_075871; WBGene00021046; WP:CE14652; XC58
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

W05H9.1 Aff_W05H9.1 P W All gene names: W05H9.1; W05H9.1.1; W05H9.1.2; CE05036; WBGene00021048; WP:CE05036; XG891
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Zhang et al 2002, T1 mec-3 dependent genes,                             
                                              Zhang et al. 2002, Fig2b overexpressed in mec-3MT                                  

W08E3.2 Aff_T04D3.7 P W All gene names: W08E3.2; 1N926; CE26028; WBGene00012343; WP:CE26028
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

W09D10.3 Aff_W09D10.3 P W All gene names: W09D10.3; 3L797; CE16564; WBGene00012361; WP:CE16564 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: ribosomal protein L7/L12 mitochondrial
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2 age                                
                                              different gene, McCarroll et al 2004  SFig5 conserved                              
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

Y105E8B.5 Aff_Y105E8A.K P W All gene names: Y105E8B.5; 1P253; CE24099; WBGene00013690; WP:CE24099 WormBase description: The Y105E8B.
Y17G7B.12 Aff_Y17G7B.12 P W All gene names: Y17G7B.12; 2M315; CE19046; WBGene00012465; WP:CE19046 WormBase description: Exonuclease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, GO                              
                                              categories                                                                         

Y17G7B.7 Aff_Y17G7B.7 P W All gene names: tpi-1; Y17G7B.7; Y17G7B.7.1; Y17G7B.7.2; 2M328; CE19040; NM_064162; TPI; WBGene00006601; WP:CE19040 WormBase description: tpi-1 is orthologous to the human gene TRIOSEPHOSPHATE ISOMERASE 1 (TPI1; OMIM:190450), which when mutated leads to disease. WormBase CDS description: Triosephosphate isomerase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

Y17G9B.8 Aff_Y17G9B.C P W All gene names: Y17G9B.8; 4F522; CE34607; WBGene00021205; WP:CE34607
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt male                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y23H5A.1 Aff_Y23H5A.1 P W All gene names: crs-2; Y23H5A.1; 1D199; CE31095; CE32959; NM_170831; NM_170832; WBGene00000801; WP:CE31095; WP:CE32959 WormBase description: crs-2 encodes a predicted cysteinyl-tRNA synthetase required for fertility.
Y34D9A.4 Aff_Y34D9A_151.A P W All gene names: spd-1; Y34D9A.4; 1B504; CE37061; NM_058408; WBGene00004952; WBGene00021330; WP:CE37061 WormBase description: spd-1 encodes a homolog of human PRC1, tobacco MAP-65, and S. cerevisiae Ase1p that is required for embryonic viability due to its requirement for mitotic spindle stability during the late stages of cytokinesis; SPD-1 is also required for fertility, gonad development, locomotion, and vulval development.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, Fig2b shared gemlines,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, wt herm vs wt                              
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

Y37A1B.5 Aff_Y37A1B.5 P W All gene names: Y37A1B.5; 4O819; CE19075; WBGene00012538; WP:CE19075
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y37E11AR.6 Aff_Y37E11A_93.A P W All gene names: efn-1; vab-2; Y37E11AR.6; 4E526; CE27606; NM_068011; WBGene00006869; WP:CE27606 WormBase description: The vab-2 gene encodes an ephrin molecule related to human ephrin B2 (OMIM:600527); VAB-2, expressed primarily in neuronal cells, is a ligand for the VAB-1 ephrin receptor and plays a role in embryonic cell movements, epidermal morphogenesis during later embryogenesis, and oocyte maturation; VAB-2 synergizes with PTP-3, a LAR-like receptor tyrosine phosphatase, to regulate morphogenesis.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, fem1 enriched genes,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, list of genes in cluster B                                                   

Y37E11B.6 Aff_Y37E11B.6 P W All gene names: Y37E11B.6; 4E362; CE19616; WBGene00021378; WP:CE19616
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

Y39A1A.12 Aff_Y39A1A.12 P W All gene names: Y39A1A.12; Y39A1A.12.1; Y39A1A.12.2; 3L735; CE19131; WBGene00012650; WP:CE19131 WormBase description: Y39A1A.12 encodes a homolog of origin recognition complex 1, which is also a distant paralog of CDC-6; both Y39A1A.12 and CDC-6 encode homologs of the origin complex which, in yeast, controls the start of DNA replication; whether either Y39A1A.12 or CDC-6 are required for this function in C. elegans, individually or in parallel, is unknown. WormBase CDS description: ATPases associated with various cellular activities (AAA)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

Y39A1A.14 Aff_Y39A1A.14 P W All gene names: Y39A1A.14; 3L739; CE19133; WBGene00012652; WP:CE19133
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004,                                     
                                              oogenesis enriched genes, Reinke et al 2004, wt males                              
                                              vs glp4 male enriched , ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

Y39A1A.3 Aff_Y39A1A.3 P W All gene names: Y39A1A.3; 3L682; CE19121; WBGene00012643; WP:CE19121
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y39A1A.6 Aff_Y39A1A.6 P W All gene names: Y39A1A.6; 3L707; CE19125; WBGene00012645; WP:CE19125
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y39G8B.2 Aff_Y39G8B.D P W All gene names: Y39G8B.2; 2O264; CE24244; WBGene00012723; WP:CE24244
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma, Shen et                            
                                              al 2005  T1 hif-1indepen hypoxia, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y40B1B.6 Aff_Y40B1B.6 P W All gene names: spr-5; Y40B1B.6; Y40B1B.6.1; Y40B1B.6.2; 1O41; CE20240; NM_060965; WBGene00005010; WP:CE20240
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

Y41C4A.10 Aff_Y41C4A.10 P W All gene names: elb-1; Y41C4A.10; 3L686; 3M808; CE20250; NM_067116; WBGene00001235; WP:CE20250
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y41D4A.4 Aff_Y41D4A_5905.B P W All gene names: Y41D4A.4; Y41D4A.4.1; Y41D4A.4.2; 4C515; CE21847; WBGene00021506; WP:CE21847
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y41D4B.12 Aff_Y41D4A_2615.A P W All gene names: Y41D4B.12; CE27623; CE31647; WBGene00021515; WP:CE27623; WP:CE31647
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

Y43F4B.5 Aff_Y43F4B.5 P W All gene names: Y43F4B.5; Y43F4B.5a.1; Y43F4B.5a.2; 3O391; CE16630; CE34117; WBGene00012803; WP:CE16630; WP:CE34117 WormBase description: Phosphoglucomutase and phosphomannomutase phosphoserine
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

Y43F8C.13 Aff_Y116F11.ZZ9 P W All gene names: Y43F8C.13; 5U164; CE21911; WBGene00012834; WP:CE21911 WormBase description: Inosine-uridine preferring nucleoside hydrolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              herm enriched gen, Reinke et al 2004, IVb male soma                                
                                              enriched genes                                                                     

Y45F10A.6 Aff_Y45F10A.6 P W All gene names: Y45F10A.6; 4O242; CE18397; CE19171; WBGene00012868; WP:CE18397; WP:CE19171 WormBase description: Probable rabGAP domains
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, mixed oogenesis soma, ViswanathanM et al 2005                             
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

Y45F10D.10 Aff_Y45F10D.10 P W All gene names: Y45F10D.10; 4O550; CE16648; WBGene00012889; WP:CE16648
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y47D3B.9 Aff_Y47D3B.9 P W All gene names: Y47D3B.9; 3M554; CE19173; WBGene00012943; WP:CE19173
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y47D7A.8 Aff_Y47D7A_138.D P W All gene names: skr-14; Y47D7A.8; 5E900; CE22057; NM_071819; WBGene00004820; WP:CE22057 WormBase description: The skr-14 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-14(RNAi) animals are at least superficially normal.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y48A6B.11 Aff_Y48A6B.11 P W All gene names: Y48A6B.11; 3M157; CE24379; CE34514; WBGene00012972; WP:CE24379; WP:CE34514
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

Y48A6B.3 Aff_Y48A6B.3 P W All gene names: Y48A6B.3; Y48A6B.3.1; Y48A6B.3.2; 3M97; CE19186; WBGene00012964; WP:CE19186 WormBase description: Ribosomal protein L7Ae
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, GO categories,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

Y48B6A.1 Aff_Y48B6A.A P W All gene names: Y48B6A.1; Y48B6A.1.1; Y48B6A.1.2; 2O442; CE22116; WBGene00012978; WP:CE22116
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S5 genes                              
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

Y48E1A.1 Aff_Y48E1A.1 P W All gene names: Y48E1A.1; 2N962; CE22157; CE37860; WBGene00012999; WP:CE22157; WP:CE37860 WormBase description: DNA-directed RNA polymerase I largest subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y48G1A.4 Aff_Y48G1A_54.D P W All gene names: Y48G1A.4; 1A803; CE27000; WBGene00021660; WP:CE27000
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Wang et al 2003                             
                                              S5 genes common to feeding ANOVA, Wang et al 2003  S3                              
                                              genes pass one-way ANOVA                                                           

Y4C6B.1 Aff_Y4C6B.H P W All gene names: Y4C6B.1; Y4C6B.H; 4G119; CE21305; WBGene00021155; WP:CE21305
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y52B11A.10 Aff_Y52B11A.10 P W All gene names: Y52B11A.10; 1L643; CE20298; WBGene00013129; WP:CE20298
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y53C12B.1 Aff_Y53C12B.1 P W All gene names: Y53C12B.1; 2K34; CE14894; WBGene00013143; WP:CE14894 WormBase description: WD domain, G-beta repeats (4 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Wang et al 2003  S5 genes                            
                                              common to feeding ANOVA, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA                                                                 

Y54E5A.1 Aff_Y105E8A.AA P W All gene names: Y54E5A.1; 1P280; CE28791; WBGene00013197; WP:CE28791
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

Y55F3AR.2 Aff_Y55F3A_750.E P W All gene names: Y55F3AR.2; Y55F3A_750.E; 4B849; CE34418; WBGene00021933; WP:CE34418
Y56A3A.18 Aff_Y56A3A.Q P W All gene names: Y56A3A.18; Y56A3A.18.1; Y56A3A.18.2; 3N8; CE22586; WBGene00013236; WP:CE22586
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

Y57A10A.19 Aff_Y57A10A.S P W All gene names: Y57A10A.19; 2M517; CE25503; WBGene00013260; WP:CE25503
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order                                               

Y58G8A.4 Aff_Y58G8A_208.A P W All gene names: Y58G8A.4; 5A756; CE33345; CE36962; WBGene00021983; WP:CE33345; WP:CE36962
Y59C2A.3 Aff_Y59C2A.3 P W All gene names: Y59C2A.3; 2C506; CE37171; WBGene00021986; WP:CE37171
Y61A9LA.1 Aff_Y61A9LA_74.D P W All gene names: Y61A9LA.1; 5F79; CE29895; WBGene00022014; WP:CE29895
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y63D3A.2 Aff_Y63D3A.2 P W All gene names: fbxb-100; Y63D3A.2; 1O684; CE20333; WBGene00013403; WP:CE20333 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y71F9AL.6 Aff_Y71F9A_262.B P W All gene names: Y71F9AL.6; 1D459; CE22840; WBGene00022111; WP:CE22840
Y71F9B.5 Aff_Y71F9B_287.C, Aff_Y71F9B_299.B P W All gene names: lin-17; Y71F9B.5; Y71F9B.5b.1; Y71F9B.5b.2; Y71F9B_287.C; 1D285; CE25569; CE28810; NM_058627; WBGene00003006; WP:CE25569; WP:CE28810 WormBase description: lin-17 encodes one of four C. elegans Frizzled homologs, integral membrane proteins that contain an external cysteine rich domain (CRD) and seven transmembrane domains and that function in a wide variety of species as receptors for Wnt glycoprotein signaling molecules; LIN-17 activity is required for specifying the polarity of a number of asymmetric cell divisions that, in C. elegans, are essential for development of such structures as the vulva, somatic gonad, and tail; LIN-17 is also required for the proper polarity of neuronal migrations along the anterior-posterior axis; genetic interactions indicate that LIN-17 likely functions as a receptor for several different Wnt molecules, including LIN-44 and EGL-20, and that in specifying cell fates, the LIN-17-mediated signaling pathway often functions redundantly with other signaling pathways, including the RTK/Ras pathway; a LIN-17 translational reporter fusion shows membrane-associated expression in all of the Pn.pxx vulval precursor cells, in the descendants of V6 and T in males, in the P11.p and B cells, as well as their daughters, and granddaughters, and weakly in P10.p and its daughters; the reporter fusion does not reveal expression in P7.p, Z1, Z4, and T
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y73C8B.4 Aff_Y73C8B.D P W All gene names: lag-2; let-461; sel-3; Y73C8B.4; Y73C8B.D; 5D667; CE22970; NM_071476; WBGene00002246; WP:CE22970 WormBase description: lag-2 encodes a transmembrane protein of the Delta/Serrate/Lag-2 (DSL) family that functions as a signaling ligand for the GLP-1 and LIN-12 Notch-like receptors; LAG-2 is required for larval viability and for cell fate decisions involving the germline (meiosis vs mitosis), the somatic gonad, and the early embryo; in addition, LAG-2 functions redundantly with the transmembrane APX-1 and secreted DSL-1 ligands to regulate lateral signaling during vulval development; LAG-2 is expressed in the distal tip cell of the somatic gonad, the ventral nerve cord, the descendants of ABalap and MSap in the developing embryo, and in all six vulval precursor cells (VPCs) during the early L3 stage, with later expression in the VPCs generally restricted to P6.p; lag-2 expression in the vulval cells is regulated by the LET-23/EGF receptor signaling pathway and the SUR-2 component of the Mediator transcription complex. WormBase CDS description: intercellular signal protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y76A2B.3 Aff_Y76A2B.3 P W All gene names: Y76A2B.3; 3O630; CE19275; WBGene00013575; WP:CE19275 WormBase description: AMP-binding enzyme
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

Y77E11A.10 Aff_Y77E11A_3443.M P W All gene names: clp-6; Y77E11A.10; 4C192; CE25611; NM_067680; WBGene00000546; WP:CE25611 WormBase description: clp-6 encodes a calpain homolog that has significant identity to mammalian calpains over its whole length and that contains motifs typical of calpains, including a thiol (cysteine) protease active site and a Ca[2+]-binding domain; CLP-6 is not required for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf), since clp-6(RNAi) has no effect on such degeneration.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, GO categories, Reinke et al 2004, fem3 enriched                              
                                              genes                                                                              

Y82E9BR.14 Aff_Y119D3_446.D P W All gene names: Y82E9BR.14; Y82E9BR.14a.1; Y82E9BR.14a.2; 3C500; CE27038; CE34433; WBGene00022347; WP:CE27038; WP:CE34433
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y87G2A.2 Aff_Y87G2A.H P W All gene names: Y87G2A.2; 1O127; CE28719; WBGene00013594; WP:CE28719
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y94H6A.5 Aff_Y94H6A_149.A P W All gene names: Y94H6A.5; 4D454; CE37302; CE37303; WBGene00022378; WP:CE37302; WP:CE37303
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

ZC302.2 Aff_ZC302.2 P W All gene names: ZC302.2; 5L219; CE06574; WBGene00013862; WP:CE06574 WormBase description: guanine nucleotide binding protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

ZC376.5 Aff_ZC376.5 P W All gene names: trm-1; ZC376.5; 5O664; CE15201; NM_074112; Trm1; WBGene00006613; WP:CE15201 WormBase description: N2,N2-dimethylguanosine tRNA methyltransferase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Lund et al 2002  Fig3D Oocyte-en, McCarroll et                             
                                              al 2004  SFig5 conserved w/ yeast, McCarroll et al 2004                            
                                               SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

ZK1098.5 Aff_ZK1098.5 P W All gene names: ZK1098.5; 3K615; CE00368; WBGene00014222; WP:CE00368 WormBase description: ZK1098.5 encodes a unfamiliar protein that is individually dispensable for viability and gross morphology in RNAi assays, but is cotranscribed with ZK1098.1 and thus might act in concert with it.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

ZK1127.5 Aff_ZK1127.5 P W All gene names: ZK1127.5; 2H339; CE32083; WBGene00022852; WP:CE32083
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, Romagnolo et al 2002  Fig3b Metabolism,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK1236.3 Aff_ZK1236.3 P W All gene names: phi-57; ZK1236.3; 3J511; CE00532; WBGene00023405; WP:CE00532
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK154.3 Aff_ZK154.3 P W All gene names: mec-7; ZK154.3; CE15257; NM_076912; WBGene00003171; WP:CE15257; XI394 WormBase description: mec-7 encodes a beta-tubulin required for touch sensitivity along the body wall, and for normal levels of locomotor activity; it is strongly expressed in six touch receptor neurons, with weak expression in FLP, PVD, and BDU cells. WormBase CDS description: beta tubulin
                                              
Member of lists (Publications lists):
                                              Roy et al 2002  S3 muscle genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK180.3 Aff_ZK180.3 P W All gene names: ZK180.3; ZK180.3b.1; ZK180.3b.2; ZK180.3b.3; 4F274; CE07621; CE33959; WBGene00022677; WP:CE07621; WP:CE33959
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

ZK185.2 Aff_ZK185.2 P W All gene names: ZK185.2; 4F305; CE31747; WBGene00022682; WP:CE31747
ZK265.6 Aff_ZK265.6 P W All gene names: ZK265.6; 1I831; CE15299; WBGene00013958; WP:CE15299
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              males vs glp4 male enriched , ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

ZK484.4 Aff_ZK484.4 P W All gene names: ZK484.4; 1G648; CE27354; CE27355; WBGene00022750; WP:CE27354; WP:CE27355
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

ZK512.3 Aff_ZK512.3 P W All gene names: ced-11; ZK512.3; 3K213; CE00409; NM_066620; WBGene00000425; WP:CE00409 WormBase description: The ced-11 gene encodes a predicted transmembrane ion channel related to the long transient receptor potential channel (LTRPC) subfamily of TRP channels found in Drosophila and mammals; CED-11 functions as a downstream effector in the programmed cell death pathway and may play a role in affecting the morphological changes seen in the nucleus, cytoplasm, and plasma membrane of apoptotic cells.
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 TransientList,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

ZK593.1 Aff_ZK593.1 P W All gene names: ZK593.1; 4L677; CE24731; WBGene00014001; WP:CE24731 WormBase description: pyruvate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, GO categories, Reinke et                              
                                              al 2004, herm soma enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

ZK593.8 Aff_ZK593.8 P W All gene names: ZK593.8; 4L703; CE28722; WBGene00014004; WP:CE28722
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

ZK84.1 Aff_ZK84.1 P W All gene names: ZK84.1; 2G313; CE02924; WBGene00022649; WP:CE02924
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster C, Reinke et al 2004,                               
                                              IVb male soma enriched genes, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

ZK858.7 Aff_ZK858.7 P W All gene names: ZK858.7; 1J718; CE35204; WBGene00014120; WP:CE35204
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

ZK899.8 Aff_C07B5.1 P W All gene names: GAP-2-4; gap-2; ZK899.8; ZK899.8i.1; ZK899.8i.2; CE23470; CE23471; CE23472; CE23473; CE23474; CE23475; CE28277; CE31677; CE39119; NM_077193; WBGene00001516; WP:CE23470; WP:CE23471; WP:CE23472; WP:CE23473; WP:CE23474; WP:CE23475; WP:CE28277; WP:CE31677; WP:CE39119; XK133 WormBase description: gap-2 encodes a Ras GTPase-activating protein (RasGAP) that is orthologous to mammalian nGAP and synGAP (OMIM:606136, OMIM:603384, synGAP is essential for postnatal survival and neuronal development); by homology, GAP-2 is predicted to function as a negative regulator of Ras signaling by enhancing the intrinsically weak Ras GTPase activity; gap-2 loss-of-function mutations partially suppress the larval lethality of let-23 and let-60 loss-of-function mutations, supporting a role for gap-2 in negative regulation of Ras signaling in vivo; gap-2 can encode at least eight different isoforms that appear to be expressed in a wide variety of tissues including the vulva, gonad, pharynx, neurons, and blast/rectal cells of the tail.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK938.2 Aff_ZK938.2 P W All gene names: ZK938.2; 2K128; CE02397; WBGene00014159; WP:CE02397
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol