Hill et al 2000, developmentally modulated cluster, 165 genes

Gene list file name:Hill2000_T1_cluster5-4.txt
Type of gene identifier:Affymetrix custom chip
Description:Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,4)  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AFF_B0413.D Aff_B0413.D P W
AFF_C15C8.4 Aff_C15C8.4 P W
AFF_F26D11.3 Aff_F26D11.3 P W
AFF_Y105E8A.R Aff_Y105E8A.R P W
AFF_Y53G8A_2706.A Aff_Y53G8A_2706.A P W
AFF_Y54E10A_156.D Aff_Y54E10A_156.D P W
AFF_Y59A8A.D Aff_Y59A8A.D P W
AFF_Y94H6A_148.W Aff_Y94H6A_148.W P W
B0280.9 Aff_B0280.9 P W All gene names: B0280.9; 3I212; CE00816; WBGene00015104; WP:CE00816
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

B0464.6 Aff_B0464.6 P W All gene names: B0464.6; B0464.6.1; B0464.6.2; B0464.6.3; 3K554; CE33965; WBGene00007186; WP:CE33965
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster F, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

B0511.7 Aff_B0511.7 P W All gene names: B0511.7; 1L208; CE34246; WBGene00015233; WP:CE34246
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C01G6.5 Aff_C01G6.5 P W All gene names: C01G6.5; 2J566; CE00867; WBGene00007227; WP:CE00867 WormBase description: Forkhead-associated (FHA) domain
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, list of                             
                                              genes in cluster E                                                                 

C02F12.1 Aff_C02F12.1 P W All gene names: tsp-17; C02F12.1; CE35213; NM_076233; WBGene00006643; WP:CE35213; XE303 WormBase description: transpanin
C05D11.2 Aff_C05D11.2 P W All gene names: tag-171; vps-16; C05D11.2; C05D11.2.1; C05D11.2.2; 3H525; CE24785; WBGene00006516; WP:CE24785
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Zhang et al 2002, T1 mec-3 dependent                            
                                              genes                                                                              

C05D11.3 Aff_C05D11.3 P W All gene names: tag-170; C05D11.3; 3H521; CE01133; WBGene00006515; WBGene00015482; WP:CE01133
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C05D2.10 Aff_C05D2.6 P W All gene names: C05D2.10; C05D2.10a.1; C05D2.10a.2; 3G688; CE26861; CE29560; WBGene00015470; WP:CE26861; WP:CE29560
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C06H2.3 Aff_C06H2.3 P W All gene names: C06H2.3; 5L609; CE05235; WBGene00007387; WP:CE05235 WormBase description: Acetyltransferase (GNAT) family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, Wang et al 2003  S5 genes common to                                   
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C07G1.3 Aff_C07G1.3 P W All gene names: pct-1; C07G1.3; C07G1.3a.1; C07G1.3a.2; 4I953; CE06779; CE29073; CE32571; NM_068971; WBGene00003961; WP:CE06779; WP:CE29073; WP:CE32571; pct WormBase description: ser/thr protein kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

C13F10.6 Aff_C13F10.6 P W All gene names: C13F10.6; 5H700; CE08147; WBGene00015745; WP:CE08147
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E                                                              

C14B1.5 Aff_C14B1.5 P W All gene names: C14B1.5; C14B1.5.1; C14B1.5.2; 3E797; CE17401; WBGene00007576; WP:CE17401 WormBase description: C14B1.5 encodes an ortholog of S. cerevisiae YIL103 and human DPH2L1/OVCA1 (OMIM:603527, deleted or downregulated in ovarian tumors); C14B1.5 is paralogous to S. cerevisiae DPH2/YKL191W, a protein component of diphtamide synthesis; C14B1.5 has no obvious function in mass RNAi assays. WormBase CDS description: diptheria toxin resistance protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, GO                                     
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 sir-2.1 regulated                                   

C14C11.1 Aff_C14C11.1 P W All gene names: C14C11.1; 5G145; CE06820; WBGene00015765; WP:CE06820
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, shared sperm                                                    

C16C2.4 Aff_C16C2.4 P W All gene names: C16C2.4; 1K290; CE15621; WBGene00007621; WP:CE15621
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated                                                         

C17E4.6 Aff_C17E4.8 P W All gene names: C17E4.6; 1K7; CE25780; WBGene00007645; WP:CE25780 WormBase description: YL-1 protein like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

C25E10.3 Aff_C25E10.3 P W All gene names: srsx-34; C25E10.3; 5J519; CE06865; CE27732; CE38150; NM_072939; NM_072940; WBGene00016093; WP:CE06865; WP:CE27732; WP:CE38150 WormBase description: 7TM chemoreceptor, srsx family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C26D10.1 Aff_C26D10.1 P W All gene names: ran-3; C26D10.1; 2I614; CE03024; NM_063352; WBGene00004304; WP:CE03024 WormBase description: regulator of chromosome condensation
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C26F1.3 Aff_C26F1.3 P W All gene names: C26F1.3; 5I259; CE06877; WBGene00016148; WP:CE06877
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, Romagnolo et al                               
                                              2002  Fig3b Unkown, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C33F10.12 Aff_C33F10.12 P W All gene names: C33F10.12; 2F126; CE04144; WBGene00016358; WP:CE04144 WormBase description: mitochondrial phosphate carrier protei
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, shared sperm                                     

C34B7.2 Aff_C34B7.2 P W All gene names: C34B7.2; 1I917; CE32316; WBGene00007912; WP:CE32316 WormBase description: Yeast hypothetical protein YNOD like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              Romagnolo et al 2002  Fig3b others, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

C34C12.5 Aff_C34C12.5 P W All gene names: C34C12.5; C34C12.5.1; C34C12.5.2; 3E563; CE01513; WBGene00007924; WP:CE01513 WormBase description: RSP1 protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C                                                                          

C35D10.10 Aff_C35D10.10 P W All gene names: C35D10.10; 3F950; CE01191; WBGene00016446; WP:CE01191
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C36B1.5 Aff_C36B1.5 P W All gene names: C36B1.5; C36B1.5.1; C36B1.5.2; 1J310; CE05372; WBGene00007972; WP:CE05372 WormBase description: U4/U6 small nuclear ribonucleoprotein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C38C3.5 Aff_F53E2.C P W All gene names: UNC-60A; unc-60; unc-66; C38C3.5; C38C3.5c.1; C38C3.5c.2; C38C3.5c.3; 5B957; CE20547; CE20549; CE31893; NM_071026; WBGene00006794; WP:CE20547; WP:CE20549; WP:CE31893 WormBase description: unc-60 encodes orthologs of actin depolymerizing factor/cofilin, actin-binding proteins that regulate actin filament dynamics; one UNC-60 isoform, UNC-60A, primarily binds G-actin, depolymerizes actin filaments, and inhibits actin polymerization; UNC-60A is essential during early embryonic development for polar body extrusion, cytokinesis, and embryonic patterning; UNC-60B, which does not inhibit actin polymerization, binds F- and G-actin and influences the rate of actin polymerization by the UNC-60B:actin ratio; UNC-60B is required for actin filament organization in body wall muscle, locomotion, and for efficient actin filament disassembly by UNC-78, an actin interactin protein 1 (AIP1) ortholog; UNC-60A and UNC-60B are differentially expressed: UNC-60A is found in oocytes, embryos, and the adult gonad and intestine, while UNC-60B is found in body wall muscle, the vulva, and spermatheca.
                                              
Member of lists (Publications lists):
                                              Roy et al 2002  S2 positivecontrol L1                             
                                              muscle, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

C38H2.2 Aff_C38H2.2 P W All gene names: C38H2.2; 3L473; CE32602; WBGene00008019; WP:CE32602
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C43E11.2 Aff_C43E11.2 P W All gene names: C43E11.2; 1E835; CE08680; CE32609; WBGene00016602; WP:CE08680; WP:CE32609
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen                                                       

C48B4.2 Aff_C48B4.2 P W All gene names: rom-2; C48B4.2; 3K680; CE37757; NM_066719; WBGene00004401; WP:CE37757 WormBase description: Rhomboid
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C50F2.7 Aff_C50F2.7 P W All gene names: C50F2.7; 1E468; CE08913; WBGene00016840; WP:CE08913
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C53D5.4 Aff_C53D5_1638.D P W All gene names: ztf-3; C53D5.4; 1A760; CE28215; WBGene00016905; WP:CE28215 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E                                                                          

D2005.3 Aff_D2005.3 P W All gene names: D2005.3; 1I388; CE32341; WBGene00008398; WP:CE32341
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

D2030.1 Aff_D2030.1 P W All gene names: D2030.1; D2030.1.1; D2030.1.2; D2030.1.3; 1I144; CE09078; WBGene00008411; WP:CE09078 WormBase description: alpha 1,2 mannosidase precursor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

E01B7.2 Aff_C06H5.4 P W All gene names: E01B7.2; 5S403; CE23622; WBGene00008442; WP:CE23622
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F09G2.2 Aff_F09G2.2 P W All gene names: F09G2.2; 5H677; CE37626; WBGene00017311; WP:CE37626
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F11D5.1 Aff_F11D5.1 P W All gene names: F11D5.1; CE27948; CE27949; CE39915; WBGene00017380; WP:CE27948; WP:CE27949; WP:CE39915; XD965
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F14D7.2 Aff_F14D7.2 P W All gene names: F14D7.2; 5O772; CE09380; WBGene00008789; WP:CE09380
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Lund et al 2002   Fig3C Germline-intrinsic,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

F15H9.2 Aff_F15H9.2 P W All gene names: sri-15; F15H9.2; 1M742; CE20687; NM_060671; WBGene00005527; WP:CE20687 WormBase description: 7TM chemoreceptor, sri family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F20B6.8 Aff_F20B6.8 P W All gene names: hpk-1; F20B6.8; F20B6.8c.1; F20B6.8c.2; F20B6.8c.3; F20B6.8c.4; F20B6.8c.5; CE04430; CE30961; CE30962; NM_171662; NM_171663; NM_171664; WBGene00001994; WP:CE04430; WP:CE30961; WP:CE30962; XE830 WormBase description: hpk-1 encodes a predicted dual-specificity protein kinase with distant homology to the vertebrate protein kinase DYRK1A and the Drosophila homolog mini-brain; increased expression of DYRK1A is implicated in the neuropathology of trisomy 21/Down syndrome; RNA interference of hpk-1 does not result in any detectable phenotype; the HPK-1::GFP fusion protein is localized to the nucleus and is expressed in cleavage stage embryos.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16 Resveratrol                            

F25H2.4 Aff_F25H2.4 P W All gene names: F25H2.4; 1L129; CE09649; WBGene00009118; WP:CE09649
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F25H2.8 Aff_F25H2.8 P W All gene names: ubc-25; F25H2.8; F25H2.8.1; F25H2.8.2; 1L139; CE34543; NM_060363; WBGene00006720; WP:CE34543
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F25H9.6 Aff_F25H9.6 P W All gene names: F25H9.6; 5N948; CE09663; WBGene00009138; WP:CE09663 WormBase description: Yeast hypothetical 65.2 KD protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F26F12.5 Aff_F26F12.5 P W All gene names: F26F12.5; 5G344; CE07150; CE32881; WBGene00017836; WP:CE07150; WP:CE32881
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F26F4.5 Aff_F26F4.5 P W All gene names: F26F4.5; F26F4.5.1; F26F4.5.2; 3F978; CE29289; WBGene00017827; WP:CE29289
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F28C12.1 Aff_F28C12.1 P W All gene names: sra-17; F28C12.1; 1N279; CE33385; NM_060811; WBGene00005043; WP:CE33385 WormBase description: 7TM chemoreceptor, sra family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F28H1.1 Aff_F28H1.1 P W All gene names: F28H1.1; 1E565; CE09766; WBGene00017908; WP:CE09766
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F29G9.2 Aff_F29G9.2 P W All gene names: F29G9.2; F29G9.2b.1; F29G9.2b.2; F29G9.2b.3; CE09796; CE27374; NM_072159; NM_182341; WBGene00017931; WP:CE09796; WP:CE27374
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E                                                   

F31F7.3 Aff_F31F7.3 P W All gene names: F31F7.3; 5G748; CE09841; WBGene00017966; WP:CE09841
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F32A6.3 Aff_F32A6.3 P W All gene names: vps-41; F32A6.3; CE37009; CE38956; WBGene00017974; WP:CE37009; WP:CE38956; XF907
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma                                                   

F32H2.4 Aff_F32H2.4 P W All gene names: F32H2.4; 1J547; CE28927; WBGene00009341; WP:CE28927 WormBase description: WD domain, G-beta repeat (3 domains)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F33A8.3 Aff_F33A8.3 P W All gene names: cey-1; F33A8.3; F33A8.3.1; F33A8.3.2; 2L330; CE17755; NM_063965; WBGene00000472; WP:CE17755 WormBase description: cey-1 encodes a protein with a cold-shock/Y-box domain that is expressed in early embryonic blastomeres (at the 15-cell stage, i.e., pre-gastrulation), but is normally repressed in early germline blastomeres by PIE-1; it is predicted to be mitochondrial by phylogenetic profiling. WormBase CDS description: 'Cold-shock' DNA-binding domain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F35G12.5 Aff_F35G12.5 P W All gene names: F35G12.5; 3F675; CE00974; WBGene00009442; WP:CE00974
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, ViswanathanM et                              
                                              al 2005  S2 sir-2.1 regulated                                                      

F36H2.1 Aff_F36H2.1 P W All gene names: tat-5; F36H2.1; 1J812; CE34183; CE34184; CE39367; WBGene00009498; WP:CE34183; WP:CE34184; WP:CE39367 WormBase description: E1-E2 ATPase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F37C12.1 Aff_F37C12.1 P W All gene names: F37C12.1; 3I277; CE00742; WBGene00018149; WP:CE00742
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F37C12.2 Aff_F37C12.2 P W All gene names: F37C12.2; 3I275; CE00741; WBGene00018150; WP:CE00741
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F41C6.1 Aff_F41C6.1 P W All gene names: unc-106; unc-6; F41C6.1; F41C6.1.1; F41C6.1.2; CE04538; NM_076764; WBGene00006746; WP:CE04538; XH515 WormBase description: unc-6 encodes a netrin orthologous to the human and mouse netrin-1 precursor proteins; UNC-6 functions as a guidance molecule that regulates the migrations of pioneer axons and mesodermal cells, such as the gonadal distal tip cell, along the dorsoventral axis; a secreted molecule, UNC-6 is expressed during embryogenesis by epidermoblasts and neurons; UNC-6 is involved in both attractive and repulsive interactions that are mediated by the UNC-40 and UNC-5 netrin receptors, respectively.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B                                                                          

F42H11.2 Aff_F42H11.2 P W All gene names: lem-3; F42H11.2; F42H11.2.1; F42H11.2.2; 1K156; CE10332; NM_060138; WBGene00002276; WP:CE10332 WormBase description: ankyrin domain
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, GO                              
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F43H9.1 Aff_F43H9.1 P W All gene names: ech-3; F43H9.1; 5I503; CE07245; NM_072665; WBGene00001152; WP:CE07245 WormBase description: enoyl-coA hydratase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

F45G2.9 Aff_F45G2.9 P W All gene names: F45G2.9; 3O526; CE16052; WBGene00009735; WP:CE16052
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F46C8.3 Aff_F46C8.3 P W All gene names: F46C8.3; CE28334; WBGene00018485; WP:CE28334; XI145
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F53A3.4 Aff_F53A3.4 P W All gene names: pqn-41; F53A3.4; 3D27; CE28443; NM_065077; WBGene00004128; WP:CE28443 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F53C11.4 Aff_F53C11.4 P W All gene names: F53C11.4; F53C11.4.1; F53C11.4.2; 5O266; CE17853; WBGene00009974; WP:CE17853
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F54C1.8 Aff_F54C1.8 P W All gene names: F54C1.8; 1F574; CE34315; WBGene00018792; WP:CE34315
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

F54C8.5 Aff_F54C8.5 P W All gene names: F54C8.5; 3K544; CE00191; WBGene00010038; WP:CE00191 WormBase description: Ras family
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

F55A11.2 Aff_F55A11.2 P W All gene names: syn-3; F55A11.2; 5M245; CE05944; NM_073567; WBGene00006373; WP:CE05944 WormBase description: epimorphin protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F55B12.3 Aff_F55B12.3 P W All gene names: egl-41; sel-10; F55B12.3; F55B12.3b.1; F55B12.3b.2; 5O305; CE25007; CE27762; WBGene00004767; WP:CE25007; WP:CE27762 WormBase description: sel-10 encodes two isoforms of an F-box and WD-repeat-containing protein that is a member of the CDC4/CUL-1 family of E2-E3 ubiquitin ligases that target cell cycle control proteins for ubiquitin-mediated degradation; SEL-10 functions as a negative regulator of the LIN-12/Notch-like signaling pathway in C. elegans and thus may contribute to cell fate decisions mediated by LIN-12; SEL-10 physically interacts with LIN-12 and with SEL-12, a C. elegans presenilin, and as such, is proposed to regulate the levels and/or activity of these proteins; SEL-10 also plays a role in sexual fate determination by regulating sexually dimorphic apoptosis of hermaphrodite- and male-specific neurons; the targets of SEL-10 in these sex-specific fate decisions are not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

F55C5.8 Aff_F55C5.8 P W All gene names: F55C5.8; 5M770; CE20875; WBGene00010097; WP:CE20875 WormBase description: signal recognition particle 68 KD protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

F56C11.5 Aff_F56C11.5 P W All gene names: F56C11.5; 1A651; CE34322; WBGene00018957; WP:CE34322
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F56C9.8 Aff_F56C9.8 P W All gene names: F56C9.8; 3I408; CE01327; WBGene00018952; WP:CE01327
F57B9.7 Aff_T07E3.7 P W All gene names: F57B9.7; 3I14; CE31011; CE31012; WBGene00018998; WP:CE31011; WP:CE31012
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, mixed oogenesis soma, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

F57C9.4 Aff_F57C9.4 P W All gene names: F57C9.4; 1F403; CE28474; CE28475; WBGene00019011; WP:CE28474; WP:CE28475
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, fem1 enriched genes, Reinke et al 2004, wt                             
                                              vs glp-4 enriched genes, Reinke et al 2004, oogenesis                              
                                              enriched genes, Reinke et al 2004, wt herm vs wt male                              
                                              enriched gen                                                                       

F58A4.6 Aff_F58A4.6 P W All gene names: F58A4.6; 3K703; CE34192; WBGene00010229; WP:CE34192
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, herm soma                                 
                                              enriched genes                                                                     

F58E6.1 Aff_F58E6.1 P W All gene names: STAT-B; F58E6.1; CE20893; CE25921; WBGene00010251; WP:CE20893; WP:CE25921 WormBase description: The F58E6.1 encodes a protein that may be involved in apoptosis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F59A3.2 Aff_F59A3.2 P W All gene names: F59A3.2; 1G83; CE11418; CE33116; WBGene00019075; WP:CE11418; WP:CE33116
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, Romagnolo et al 2002                              
                                              Fig3b Unkown                                                                       

H05C05.2 Aff_H05C05.2 P W All gene names: H05C05.2; 3E52; CE32452; CE32453; WBGene00019158; WP:CE32452; WP:CE32453
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, list of genes in cluster F, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

H19N07.3 Aff_H19N07.3 P W All gene names: H19N07.3; H19N07.3.1; H19N07.3.2; 5L598; CE16184; WBGene00010407; WP:CE16184
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

H23L24.2 Aff_H23L24_11.D P W All gene names: H23L24.2; 4J479; CE23817; WBGene00019229; WP:CE23817
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, male sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, wt herm vs wt herm enriched gen, Reinke et al                             
                                              2004, fem3 enriched genes, Reinke et al 2004, wt males                             
                                              vs glp4 male enriched , Reinke et al 2004, mixed sperm                             
                                              soma, Reinke et al 2004, list of genes in cluster D,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K02D10.5 Aff_K02D10.5 P W All gene names: phi-28; K02D10.5; 3J867; CE17152; WBGene00019305; WP:CE17152 WormBase description: synaptosomal associated protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

K03H4.2 Aff_K03H4.2 P W All gene names: K03H4.2; 5N655; CE11698; WBGene00010549; WP:CE11698
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

K04C2.3 Aff_K04C2.3 P W All gene names: K04C2.3; K04C2.3a.1; K04C2.3a.2; 3H963; CE00721; CE32689; WBGene00019381; WP:CE00721; WP:CE32689
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, IVb male soma enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

K04F10.7 Aff_K04F10.7 P W All gene names: K04F10.7; 1G943; CE18015; WBGene00019399; WP:CE18015
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma, Reinke et                            
                                              al 2004, list of genes in cluster E                                                

K04G7.11 Aff_K04G7.11 P W All gene names: K04G7.11; 3I250; CE39587; WBGene00019402; WP:CE39587
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

K04H4.6 Aff_K04H4.6 P W All gene names: crn-6; K04H4.6; 3K459; CE25043; CE31813; NM_066660; NM_066661; WBGene00000799; WP:CE25043; WP:CE31813; YMV6
K05F1.5 Aff_K05F1.4 P W All gene names: K05F1.5; 2G83; CE28587; WBGene00019407; WP:CE28587
K06H7.6 Aff_K06H7.5 P W All gene names: apc-2; K06H7.6; 3J171; CE26943; NM_066361; WBGene00000143; WP:CE26943
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

K07A1.4 Aff_K07A1.4 P W All gene names: K07A1.4; 1K166; CE11846; WBGene00010611; WP:CE11846
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, shared sperm, ViswanathanM et al                                
                                              2005  S2 daf-16 Resveratrol                                                        

K07D4.7 Aff_K07D4.7 P W All gene names: tag-218; K07D4.7; 2E305; CE19531; CE25936; WBGene00019487; WP:CE19531; WP:CE25936
K08F8.6 Aff_K08F8.6 P W All gene names: let-19; mdt-13; pqn-49; psa-7; K08F8.6; 2J71; CE37536; NM_063465; TRAP240; WBGene00002295; WP:CE37536 WormBase description: The let-19 gene encodes a protein related to human TRAP240 (thyroid hormone receptor-associated protein 240, OMIM:300182), a transcriptional co-activation complex subunit conserved in yeast, Drosophila, and humans; LET-19 is required for proper asymmetric cell divisions and cell fusions regulated by LIN-44/Wnt and LIN-17/frizzled, as well as for proper development of secondary vulval cell fates as regulated by Notch signaling.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol                                                                 

K09A9.3 Aff_K09A9.3 P W All gene names: ent-2; K09A9.3; K09A9.3.1; K09A9.3.2; CE11976; NM_078170; WBGene00010701; WP:CE11976; XQ221
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, GO categories,                            
                                              Reinke et al 2004, herm soma enriched genes                                        

K10C8.1 Aff_K10C8.1 P W All gene names: K10C8.1; 5N170; CE39514; WBGene00010734; WP:CE39514
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated                                                                  

K10D3.3 Aff_K10D3.3 P W All gene names: taf-11.2; K10D3.3; 1H709; CE06172; NM_059618; WBGene00006394; WP:CE06172 WormBase description: transcription factor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

K12H4.2 Aff_K12H4.2 P W All gene names: K12H4.2; 3J137; CE38528; WBGene00019677; WP:CE38528
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

M03C11.6 Aff_M03C11.6 P W All gene names: M03C11.6; 3L510; CE37782; WBGene00010843; WP:CE37782
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

M04F3.5 Aff_M04F3.5 P W All gene names: M04F3.5; 1F342; CE31974; WBGene00019771; WP:CE31974
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

M05B5.2 Aff_M05B5.2 P W All gene names: MYO2-B; M05B5.2; 1H748; CE31044; WBGene00010870; WP:CE31044
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes                                                                              

M142.8 Aff_M142.5 P W All gene names: M142.8; 3M25; CE37540; WBGene00043057; WP:CE37540
R01B10.4 Aff_R01B10.4 P W All gene names: R01B10.4; 5G526; CE18091; WBGene00019806; WP:CE18091
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

R06C1.3 Aff_R06C1.3 P W All gene names: gex-1; wve-1; R06C1.3; 1M516; CE36188; NM_060627; WBGene00006958; WP:CE36188 WormBase description: wve-1 encodes a homolog of the mammalian WAVE protein; based on homology WVE-1 might be involved in actin cytoskeletal dynamics; wve-1 is required for early cell migrations in the epidermis during embryonic morphogenesis and may require gex-2 and gex-3 for its function.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R119.4 Aff_R119.4 P W All gene names: pqn-59; prp-1; R119.4; R119.4.1; R119.4.2; 1A854; CE23925; NM_058326; WBGene00004143; WP:CE23925 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes                                        

R148.4 Aff_R148.4 P W All gene names: R148.4; 3E261; CE12854; WBGene00020103; WP:CE12854
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, Fig2b shared                                   
                                              gemlines, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

R74.5 Aff_R74.5 P W All gene names: R74.5; R74.5a.1; R74.5a.2; R74.5b.1; R74.5b.2; R74.5b.3; R74.5b.4; R74.5b.5; R74.5b.6; 3F291; CE01058; CE33537; WBGene00011279; WP:CE01058; WP:CE33537 WormBase description: R74.5 encodes a putative RNA-binding protein, with both an RNA recognition motif and a glutamine/asparagine-rich domain.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T02B11.9 Aff_T02B11.2 P W
T02E1.6 Aff_T02E1.6 P W All gene names: T02E1.6; 1I789; CE38218; WBGene00011378; WP:CE38218
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Lund et al 2002  Fig1 aging-regulated genes,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, spermatogenesis enriched genes,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              males vs glp4 male enriched , Reinke et al 2004, list                              
                                              of genes in cluster D, Reinke et al 2004, shared sperm,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T04A8.6 Aff_T04A8.6 P W All gene names: T04A8.6; 3F782; CE01075; WBGene00011408; WP:CE01075 WormBase description: ribonuleoprotein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              oogenesis enriched genes, Reinke et al 2004, wt vs                                 
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, GO categories,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

T04A8.9 Aff_T04A8.9 P W All gene names: dnj-18; T04A8.9; T04A8.9.1; T04A8.9.2; 3F787; CE01078; NM_065561; WBGene00001036; WP:CE01078 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain. WormBase CDS description: DNAJ
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

T04C10.2 Aff_T04C10.2 P W All gene names: epn-1; T04C10.2; CE26820; CE26821; NM_078057; NM_078058; WBGene00001329; WP:CE26820; WP:CE26821; XP436 WormBase description: Yeast hypothetical protein L8167.6 like
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T04C12.5 Aff_T04C12.5 P W All gene names: act-2; T04C12.5; 5L558; CE13150; NM_073417; WBGene00000064; WP:CE13150; act2 WormBase description: act-2 encodes an invertebrate actin that may function specifically in the pharynx. WormBase CDS description: actin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T04C9.4 Aff_T04C9.4 P W All gene names: mlp-1; T04C9.4; 3H62; CE31589; CE31590; CE31591; NM_065899; NM_065900; NM_065901; WBGene00003375; WP:CE31589; WP:CE31590; WP:CE31591 WormBase description: contains LIM-like binding domain
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

T05C3.5 Aff_C24G6.5, Aff_T05C3.5 P W All gene names: dnj-19; T05C3.5; T05C3.5.1; T05C3.5.2; CE13229; NM_072051; WBGene00001037; WP:CE13229 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain. WormBase CDS description: DNAJ-like protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002 Aging time course                                 
                                              Fig2C heatshock, Romagnolo et al 2002  Fig2a heat                                  
                                              shock, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T05F1.4 Aff_T05F1.4 P W All gene names: T05F1.4; CE13261; NM_060157; WBGene00011490; WP:CE13261
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T07D1.4 Aff_T07D1.4 P W All gene names: fox-1; T07D1.4; T07D1.4.1; T07D1.4.2; CE25105; NM_076045; WBGene00001484; WP:CE25105; XD66 WormBase description: fox-1 encodes an RNA-binding protein of the RNA recognition motif (RRM) superfamily of ribonucleic acid binding proteins; during C. elegans development, FOX-1 functions redundantly with other numerator elements to effect proper dosage compensation in the early embryo; in influencing dosage compensation, FOX-1 likely acts via post-transcriptional regulation of xol-1 mRNA levels; in addition to its role in dosage compensation, fox-1 activity is also required for normal male mating behavior; Western analysis and lacZ reporter constructs indicate that FOX-1 is expressed throughout the life cycle, beginning at the 18-20-cell stage of embryogenesis and continuing on through larval stages and into adult hermaphrodites and males; while early embryonic expression of fox-1 is ubiquitous, postembryonic expression is limited to a subset of head and tail neurons. WormBase CDS description: RNA-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

T08A11.2 Aff_T08A11.2 P W All gene names: phi-11; T08A11.2; 3F354; CE03641; WBGene00011605; WP:CE03641
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

T08A9.1 Aff_T08A9.1 P W All gene names: T08A9.1; CE04916; WBGene00020334; WP:CE04916; XH957 WormBase description: T08A9.1 is orthologous to the human gene LIKELY ORTHOLOG OF MOUSE COILED COIL FORMING PROTEIN 1 (RB1CC1; OMIM:606837), which when mutated leads to disease. WormBase CDS description: keratin
T10E9.1 Aff_T10E9.1 P W All gene names: T10E9.1; 1H121; CE13543; WBGene00020411; WP:CE13543 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

T10F2.4 Aff_T10F2.4 P W All gene names: T10F2.4; T10F2.4.1; T10F2.4.2; 3G260; CE38104; WBGene00020423; WP:CE38104
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated, Wang et al 2003  S5                              
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

T12F5.1 Aff_T12F5.1 P W All gene names: T12F5.1; 1E311; CE13595; WBGene00020466; WP:CE13595
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt male                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

T19C3.4 Aff_T19C3.4 P W All gene names: T19C3.4; 3B236; CE02055; WBGene00020562; WP:CE02055 WormBase description: Polyposis locus protein 1
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S6 removed genes                            
                                              of contamination                                                                   

T22B2.4 Aff_T22B2.4 P W All gene names: sup-12; T22B2.4; CE13934; NM_076273; WBGene00006321; WBGene00020668; WP:CE13934; XE525 WormBase description: RNA-binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T22F3.5 Aff_T22F3.5 P W All gene names: srh-213; T22F3.5; 5E72; CE13970; NM_071609; WBGene00005423; WP:CE13970 WormBase description: 7TM chemoreceptor, srh family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T24A6.17 Aff_T24A6.17 P W All gene names: T24A6.17; 5E42; WBGene00020754
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated                                                      

T24D1.4 Aff_T24D1.4 P W All gene names: tag-179; T24D1.4; 1K538; CE14168; WBGene00007043; WBGene00011987; WP:CE14168 WormBase description: Yeast DIE2 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

T26F2.2 Aff_T26F2.2 P W All gene names: T26F2.2; 5O462; CE14203; WBGene00012058; WP:CE14203
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

W03F11.6 Aff_Y39G10A_236.C P W All gene names: AF-6; afd-1; W03F11.6; Y39G10A_236.E; Y39G10BM.E; 1C777; CE26729; CE26730; CE33464; CE33465; WBGene00021009; WP:CE26729; WP:CE26730; WP:CE33464; WP:CE33465
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W04D2.3 Aff_W04D2.3 P W All gene names: inx-11; opu-11; W04D2.3; 5M971; CE06538; NM_073729; WBGene00002133; WP:CE06538 WormBase description: inx-11 encodes a predicted member of the innexin family; expressed in the pharynx, a few head neurons, the tail hypodermis, posterior intestine and in some vulval and uterine muscles. WormBase CDS description: Ogre family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

W05B2.7 Aff_W05B2.7 P W All gene names: W05B2.7; 3M79b; CE21259; WBGene00012273; WP:CE21259
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

W08E3.2 Aff_T04D3.7, Aff_W08E3.2 P W All gene names: W08E3.2; 1N926; CE26028; WBGene00012343; WP:CE26028
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y105E8A.5 Aff_Y105E8A.X P W All gene names: bbs-1; Y105E8A.5; 1O962; CE25181; NM_170937; WBGene00000241; WP:CE25181
Y113G7B.23 Aff_Y113G7B.L P W All gene names: psa-1; Y113G7B.23; 5U710; CE25208; NM_075505; WBGene00004203; WP:CE25208 WormBase description: psa-1 encodes an ortholog of SWI3, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; psa-1 is probably required during mitosis of the T cells for asymmetric cell division, and in addition, is required for embryonic and larval development, as well as normal levels of fertility; psa-1 exhibits strong genetic interactions with lin-35/Rb, as psa-1 larval lethality and sterility at 20 degrees C are greatly enhanced in lin-35;psa-1 double mutants. WormBase CDS description: SWI/SNF protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y37H2A.4 Aff_Y37H2A.E P W All gene names: fbxa-107; Y37H2A.4; Y37H2A.E; 5S601; CE24210; WBGene00012564; WP:CE24210 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Y37H9A.3 Aff_Y37H9A.3 P W All gene names: Y37H9A.3; 1O383; CE37563; WBGene00012578; WP:CE37563
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y38C1AA.2 Aff_Y38C1_90.A P W All gene names: csn-3; Y38C1AA.2; 4A955; CE33861; NM_067477; WBGene00000815; WP:CE33861 WormBase description: csn-3 encodes a subunit ortholog of the eukaryotic COP9/signalosome complex which promotes deneddylation of CUL-3 and is involved in the degradation of the microtubule-severing Katanin-like protein MEI-1 during mitosis; RNA interference of csn-3 results in spindle orientation and cytokinesis defects in the embryo.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

Y39A1A.7 Aff_Y39A1A.7 P W All gene names: Y39A1A.7; 3L708; CE19126; WBGene00012646; WP:CE19126
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y39B6A.13 Aff_Y39B6.S P W All gene names: Y39B6A.13; Y39B6B.S; 5T592; CE21694; WBGene00012675; WP:CE21694
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E                                                                       

Y40B1A.1 Aff_Y40B1A.A P W All gene names: Y40B1A.1; 1N937; CE21786; WBGene00012732; WP:CE21786
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y45F3A.5 Aff_Y45F3A.5 P W All gene names: Y45F3A.5; 3L672; CE19168; WBGene00012862; WP:CE19168
Y47D3A.31 Aff_Y47D3A.F P W All gene names: Y47D3A.31; 3M246; CE22031; WBGene00012937; WP:CE22031
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes                                                                              

Y47H9C.4 Aff_Y47H9C.4 P W All gene names: ced-1; Y47H9C.4; 1M444; CE20264; CE30361; CE30362; NM_170927; WBGene00000415; WP:CE20264; WP:CE30361; WP:CE30362 WormBase description: The ced-1 gene encodes a transmembrane protein on phagocytic cells that is homologous to human CD91, a low density lipoprotein receptor paralog; the cytoplasmic tail of CED-1 contains two motifs important for engulfment. WormBase CDS description: EGF-like domain
Y48G1A.4 Aff_Y48G1A_54.D P W All gene names: Y48G1A.4; 1A803; CE27000; WBGene00021660; WP:CE27000
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Wang et al 2003                             
                                              S5 genes common to feeding ANOVA, Wang et al 2003  S3                              
                                              genes pass one-way ANOVA                                                           

Y48G1C.7 Aff_Y48G1B_55.D P W All gene names: Y48G1C.7; 1A570; CE27266; WBGene00021680; WP:CE27266
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y48G8AL.14 Aff_Y48G8A_3945.E P W All gene names: aps-3; apt-8; Y48G8AL.14; 1B628; CE30461; NM_170798; WBGene00000165; WP:CE30461 WormBase description: apt-8 encodes an adaptin orthologous to the sigma3 subunit of the heterotetrameric adaptor protein complex 3 (AP-3); by homology, APT-8 is predicted to play a role in intracellular membrane trafficking and specifically, may be involved in transport of lysosomal membrane proteins from tubular sorting endosomes to lysosomes; loss of apt-8 activity via large-scale RNAi screens in the sensitized rrf-3 background indicates that, in C. elegans, APT-8 is required for fertility and reproduction. WormBase CDS description: sigma-adaptin subunit of adaptor protein complex 3 (AP-3)
Y4C6A.3 Aff_Y4C6A.G P W All gene names: Y4C6A.3; 4G216; CE21299; WBGene00021153; WP:CE21299 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, Romagnolo et al 2002  Fig3b Unkown,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y53G8AM.7 Aff_Y53G8A_2706.B P W All gene names: Y53G8AM.7; 3E350; CE25413; WBGene00021807; WP:CE25413
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

Y54E10BR.6 Aff_Y54E10B_159.C P W All gene names: Y54E10BR.6; 1D600; CE22465; WBGene00021845; WP:CE22465
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated                                                                          

Y55D9A.1 Aff_Y55D9A.1 P W All gene names: Y55D9A.1; 4N370; CE19234; CE29066; WBGene00013223; WP:CE19234; WP:CE29066 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y57A10A.18 Aff_Y57A10A.Q P W All gene names: pqn-87; Y57A10A.18; 2M500; CE35684; NM_064193; WBGene00004167; WP:CE35684 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y60A3A.1 Aff_Y60A3.W P W All gene names: unc-51; Y60A3.W; Y60A3A.1; Y60A3A.1.1; Y60A3A.1.2; 5U466; CE24516; NM_075468; WBGene00006786; WP:CE24516 WormBase description: The unc-51 gene encodes an activity required for both axonogenesis and sex myoblast migration. WormBase CDS description: serine/threonine protein kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y71F9AR.2 Aff_Y71F9A_292.B P W All gene names: Y71F9AR.2; 1D550; CE22854; WBGene00022123; WP:CE22854
Y76A2B.4 Aff_Y76A2B.4 P W All gene names: Y76A2B.4; 3O634; CE19276; WBGene00013576; WP:CE19276
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

Y77E11A.1 Aff_Y77E11A_868.B P W All gene names: Y77E11A.1; Y77E11A.1.1; Y77E11A.1.2; Y77E11A.1.3; 4C273; CE25610; WBGene00022306; WP:CE25610
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y79H2A.3 Aff_Y79H2A.C P W All gene names: Y79H2A.3; Y79H2A.C; CE23092; CE35811; NM_067167; WBGene00013580; WP:CE23092; WP:CE35811 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y94H6A.9 Aff_Y94H6A_132.C P W All gene names: ubxn-2; Y94H6A.9; Y94H6A_132.B; 4D486; CE27555; CE33955; WBGene00022381; WP:CE27555; WP:CE33955
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

ZC434.4 Aff_ZC434.4 P W All gene names: ZC434.4; 1K908; CE38014; WBGene00013892; WP:CE38014
                                              
Member of lists (Publications lists):
                                              Lund et al 2002   Fig3C                                           
                                              Germline-intrinsic, Romagnolo et al 2002  Fig3b Unkown,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK1128.3 Aff_ZK1128.3 P W All gene names: ZK1128.3; 3L206; CE01685; WBGene00014229; WP:CE01685
ZK353.7 Aff_ZK353.7 P W All gene names: ZK353.7; 3J492; CE00391; WBGene00022702; WP:CE00391
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, intrinsic, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, Romagnolo et al 2002                             
                                              Fig3b Unkown, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

ZK418.5 Aff_ZK418.5 P W All gene names: ZK418.5; 3I162; CE28189; WBGene00022734; WP:CE28189
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

ZK632.8 Aff_ZK632.8 P W All gene names: arl-2; arl-5; ZK632.8; 3K913; CE00425; NM_066777; WBGene00000189; WP:CE00425 WormBase description: arl-5 encodes a paralog of the ADP-ribosylation factor-like protein EVL-20; ARL-5 is an ortholog of mammalian ARL5. WormBase CDS description: ADP ribosylation factor
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

ZK637.3 Aff_ZK637.3 P W All gene names: tag-256; ZK637.3; 3J981; CE00434; WBGene00014023; WP:CE00434
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

ZK675.4 Aff_ZK675.4 P W All gene names: ZK675.4; 2I201; CE01723; WBGene00014067; WP:CE01723
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order                                                                              

ZK686.2 Aff_ZK686.2 P W All gene names: ZK686.2; 3I854; CE34464; WBGene00022792; WP:CE34464 WormBase description: ATP-dependent RNA helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA