Baugh et al 2003, subclass SE_83min, 120 genes

Gene list file name:Baugh2003_classSEpi_83min.txt
Type of gene identifier:Affymetrix custom chip
Description:Baugh et al 2005, Supplymental Dataset, subclass SE_83min  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AC3.7 Aff_AC3.7 P W All gene names: dod-15; ugt-1; AC3.7; 5K877; CE05137; NM_073270; WBGene00007072; WP:CE05137 WormBase description: UDP-glucuronosyltransferase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Murphy et al 2003  Fig2 Class1                                   
                                              elongate lifespan, ReichertK et al 2005  T1 xenobiotic                             
                                              induced UDP-gl, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, Reinke et al 2004, GO categories, Reinke et al                              
                                              2004, list of genes in cluster B, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

AFF_F39D8.2 Aff_F39D8.2 P W
AFF_H24O09.C Aff_H24O09.C P W
AFF_W09G12.3 Aff_W09G12.3 P W
AFF_Y105E8A.P Aff_Y105E8A.P P W
AFF_Y116F11.ZZ17 Aff_Y116F11.ZZ17 P W
AFF_Y45F10A.3 Aff_Y45F10A.3 P W
AFF_Y55B1B_119.G Aff_Y55B1B_119.G P W
AFF_Y71A12B.A Aff_Y71A12B.A P W
B0491.1 Aff_B0491.1 P W All gene names: B0491.1; 2L639; CE02103; WBGene00007189; WP:CE02103
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

C01G10.9 Aff_C01G10.9 P W All gene names: C01G10.9; 5P563; CE07818; WBGene00007236; WP:CE07818 WormBase description: Initiation factor 2 subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4 Early                              
                                              genes, Wang et al 2003  S3  genes pass one-way ANOVA,                              
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

C05D10.3 Aff_C05D10.3 P W All gene names: C05D10.3; 3H174; CE29170; WBGene00015479; WP:CE29170
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C05E4.9 Aff_H24O09.A P W All gene names: gei-7; C05E4.9; C05E4.9a.1; C05E4.9a.2; C05E4.9a.3; C05E4.9b.1; C05E4.9b.2; 5B204; CE23521; CE32565; NM_070905; WBGene00001564; WP:CE23521; WP:CE32565 WormBase description: gei-7 encodes a predicted isocitrate lyase/malate synthase, an enzyme known to function in the glyoxylate cycle; GEI-7 was identified in a screen for proteins that interact with GEX-3, a homolog of human HEM-2 which is required for embryonic development; GEI-7 is required for embryonic morphogenesis and appears to act downstream of DAF-16 to influence lifespan.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Murphy et al 2003  Fig2 Class1 elongate                                  
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

C09G5.4 Aff_C09G5.4 P W All gene names: col-39; C09G5.4; 2K995; CE01484; NM_063908; WBGene00000616; WP:CE01484 WormBase description: col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. WormBase CDS description: collagen
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C10C5.5 Aff_C10C5.5 P W All gene names: C10C5.5; 4K147; CE36099; WBGene00007509; WP:CE36099 WormBase description: aminoacylase-1
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, GO categories, Reinke et                              
                                              al 2004, IVb male soma enriched genes, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

C10E2.4 Aff_C10E2.4 P W All gene names: C10E2.4; CE08063; WBGene00015674; WP:CE08063; XR360
C15H9.10 Aff_C15H9.10 P W All gene names: C15H9.10; CE06836; WBGene00015804; WP:CE06836; XG730
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C18A11.7 Aff_C18A11.7 P W All gene names: dim-1; C18A11.7; C18A11.7b.1; C18A11.7b.2; C18A11.7b.3; C18A11.7b.4; CE04038; CE27706; WBGene00001000; WP:CE04038; WP:CE27706; XI670
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C                                      

C18D11.2 Aff_C18D11.2 P W All gene names: maa-1; C18D11.2; 3M910; CE18513; NM_067130; WBGene00007680; WP:CE18513 WormBase description: maa-1 encodes a predicted membrane-associated Acyl-CoA binding protein; loss of maa-1 activity via RNAi results in no obvious defects. WormBase CDS description: Acyl CoA binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated                                                                          

C27D8.3 Aff_C27D8.3 P W All gene names: C27D8.3; 4N472; CE08422; CE39679; WBGene00007779; WP:CE08422; WP:CE39679 WormBase description: The C27D8.3 gene encodes a protein that may be involved in apoptosis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

C31H2.4 Aff_C31H2.4 P W All gene names: C31H2.4; CE04132; WBGene00016294; WP:CE04132; XF772 WormBase description: C31H2.4 is orthologous to human 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (HPD; OMIM:276710), which when mutated leads to tyrosinemia type III; C31H2.4 is somewhat less similar to human HPD than C. elegans HPD-1 (to which C31H2.4 is paralogous).
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C34G6.4 Aff_C34G6.4 P W All gene names: pgp-2; C34G6.4; 1G471; CE29212; NM_059306; WBGene00003996; WP:CE29212 WormBase description: pgp-2 encodes a member of the ABC transporter family with highest similarity to the vertebrate MDR (multidrug resistance) family, and is orthologous to human MDR1 (ABCB1; OMIM:171050, mutated in Crohn disease); PGP-2 is expressed at lower levels during the embryonic stages with higher expression later in development. WormBase CDS description: abc transporter
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C                                                                          

C34G6.6 Aff_C34G6.6 P W All gene names: noah-1; C34G6.6; C34G6.6a.1; C34G6.6a.2; 1G452; CE29699; CE30432; WBGene00016422; WP:CE29699; WP:CE30432
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 LateList, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

C37E2.4 Aff_C37E2.4 P W All gene names: ceh-36; C37E2.4; CE08623; NM_077964; WBGene00000457; WP:CE08623; XO802 WormBase description: ceh-36 encodes a paired-like homeodomain transcription factor that is one of three orthodenticle (OTD)-like homeodomain proteins in C. elegans (the others being ttx-1 and ceh-37); CEH-36 is required broadly for specification of the AWC olfactory neuron and also for establishing the left-right asymmetry of the ASEL and ASER gustatory neurons; in addition, CEH-36 is sufficient to specify the AFD thermosensory neuron fate in some cell types; CEH-36 is expressed in the AWC and ASE chemosensory neurons. WormBase CDS description: Homeobox domain
C39E6.4 Aff_C39E6.3 P W All gene names: mls-2; C39E6.4; CE30891; NM_076414; WBGene00003377; WP:CE30891; XF378
C39F7.2 Aff_C39F7.2 P W All gene names: C39F7.2; C39F7.2.1; C39F7.2.2; 5B704; CE27581; WBGene00016539; WP:CE27581
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C40A11.2 Aff_C40A11.2 P W All gene names: C40A11.2; C40A11.2.1; C40A11.2.2; 2C437; CE34742; WBGene00016545; WP:CE34742
C40A11.3 Aff_C40A11.3 P W All gene names: C40A11.3; 2C433; CE19366; WBGene00016546; WP:CE19366
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

C41H7.1 Aff_C41H7.1 P W All gene names: C41H7.1; 2D307; CE32605; WBGene00016571; WP:CE32605
C45E1.1 Aff_C45E1.1 P W All gene names: nhr-64; C45E1.1; 1D677; CE39696; CE39697; WBGene00003654; WP:CE39696; WP:CE39697 WormBase description: nhr-64 encodes a conserved nuclear receptor that is a member of the NR2 subfamily of nuclear receptors that contains Drosophila and human HNF4 (OMIM:600281, mutations in human HNF4A are associated with Type I MODY (maturity-onset diabetes of the young)); by homology, NHR-64 is predicted to function as a transcription factor that may activate or repress transcription in response to a hormonal signal; however, as loss of nhr-64 activity via RNAi does not result in any obvious abnormalities, the precise role of NHR-64 in C. elegans development and/or behavior is not yet known; nhr-64 is broadly expressed and detected in anterior and posterior neurons, the ventral nerve cord, the pharynx, gut, and hypodermis.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C46C11.2 Aff_C46C11.2 P W All gene names: C46C11.2; CE39005; CE39006; WBGene00016705; WP:CE39005; WP:CE39006; XF253
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

C46H11.9 Aff_C46H11.9 P W All gene names: phat-2; C46H11.9; 1F614; CE08791; WBGene00016733; WP:CE08791
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

C47C12.3 Aff_C47C12.3 P W All gene names: C47C12.3; C47C12.3a.1; C47C12.3a.2; CE33037; CE35437; NM_076907; WBGene00004335; WP:CE33037; WP:CE35437; XI361 WormBase description: ref-2 is orthologous to the human gene ZINC FINGER PROTEIN OF CEREBELLUM ZIC2 (ZIC2; OMIM:603073), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

C48D1.1 Aff_C48D1.1 P W All gene names: C48D1.1; 4N958; CE32833; CE39701; WBGene00008177; WP:CE32833; WP:CE39701 WormBase description: C.elegans ZYG-11 like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes                                                                              

C50B6.9 Aff_C50B6.9 P W All gene names: C50B6.9; 5N819; CE08878; WBGene00008222; WP:CE08878
C52E2.2 Aff_C52E2.H P W All gene names: C52E2.2; C52E2.H; 2C125b; CE20597; WBGene00016881; WP:CE20597
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C53C11.4 Aff_C53C11.4 P W All gene names: C53C11.4; CE04267; WBGene00016901; WP:CE04267; XR923 WormBase description: S. muris microneme antigen
C55B6.2 Aff_C55B6.2 P W All gene names: dnj-7; C55B6.2; CE09008; NM_076808; WBGene00001025; WP:CE09008; XH815 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain that is predicted to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

D1025.2 Aff_D1025.2 P W All gene names: D1025.2; CE17610; WBGene00008354; WP:CE17610; XP132 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Wang et al 2003  S4 Early genes, Wang et al                               
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

E03E2.1 Aff_E03E2.1 P W All gene names: cyp-43A1; E03E2.1; E03E2.1.1; E03E2.1.2; CE29747; NM_076560; WBGene00017108; WP:CE29747; XG335 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F07A5.7 Aff_F07A5.7 P W All gene names: unc-15; F07A5.7; F07A5.7.1; F07A5.7.2; F07A5.7.3; F07A5.7.4; 1H954; CE09197; NM_059684; WBGene00006754; WP:CE09197 WormBase description: The unc-15 gene encodes a paramyosin ortholog; UNC-15 protein physically interacts with MHC A, one isoform of myosin heavy chain (MHC) in striated muscle; UNC-15 accumulation is decreased in the absence of UNC-54 (myosin B), implying that degradation of UNC-15 is inhibited by its binding myosin B; conversely, myosin B (but not MYO-3/myosin A) fails to accumulate in unc-15 mutants. WormBase CDS description: paramyosin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Reinke et al 2004, IVb male soma enriched                               
                                              genes, Roy et al 2002  S2 positivecontrol L1 muscle,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F08B12.2 Aff_F08B12.2 P W All gene names: prx-12; F08B12.2; CE03163; NM_077507; WBGene00004197; WP:CE03163; XM13 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 TransientList, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F08G12.1 Aff_F08G12.1 P W All gene names: F08G12.1; CE03166; WBGene00008585; WP:CE03166; XL922 WormBase description: ras-related like protein
F10D7.3 Aff_F10D7.3 P W All gene names: F10D7.3; CE29754; WBGene00017340; WP:CE29754; XR988 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: glutaredoxin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F10E7.1 Aff_F10E7.1 P W All gene names: F10E7.1; 2H419; CE39350; WBGene00017343; WP:CE39350
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F25B4.8 Aff_F25B4.8 P W All gene names: F25B4.8; 5G170; CE30761; CE30762; WBGene00017771; WP:CE30761; WP:CE30762
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F25C8.4 Aff_F25C8.4 P W All gene names: F25C8.4; 5V375; CE18637; WBGene00009106; WP:CE18637 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: AMP-binding enzymes
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F32A5.6 Aff_F32A5.6 P W All gene names: prx-13; F32A5.6; 2H540; CE28290; NM_063112; WBGene00004198; WP:CE28290 WormBase description: prx-13 is orthologous to the human gene PEX13 (OMIM:601789), which when mutated leads to Zellweger syndrome or neonatal adrenoleukodystrophy.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F32B6.6 Aff_F32B6.6 P W All gene names: msp-77; F32B6.6; 4K659; CE09861; NM_069380; WBGene00003464; WP:CE09861 WormBase description: msp-77 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm                                                                       

F38A6.1 Aff_F38A6.1 P W All gene names: Ce-fkh-1; fkh-1; pha-4; F38A6.1; 5V229; CE15998; NM_075605; WBGene00004013; WP:CE15998 WormBase description: Fork head domain, eukaryotic transcription factors
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F44E5.4 Aff_F44E5.4 P W All gene names: F44E5.4; F44E5.4.1; F44E5.4.2; 2M48; CE18679; WBGene00009691; WP:CE18679 WormBase description: Heat shock hsp70 proteins
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress, Lund                            
                                              et al 2002 Aging time course Fig2C heatshock, Reinke et                            
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, Romagnolo et al 2002                             
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F45H11.1 Aff_F45H11.1 P W All gene names: F45H11.1; 1K947; CE16055; CE38353; WBGene00009743; WP:CE16055; WP:CE38353 WormBase description: Zinc finger, C2H2 type
F46A9.6 Aff_C17E4.11 P W All gene names: mec-8; F46A9.6; F46A9.6.1; F46A9.6.2; F46A9.6.3; 1K18; CE08260; NM_060107; WBGene00003172; WP:CE08260 WormBase description: mecanosensory gene mec-8
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F47A4.2 Aff_F47A4.2 P W All gene names: dpy-22; mdt-12; psa-6; sop-1; F47A4.2; CE16058; NM_077244; WBGene00001081; WP:CE16058; XK430 WormBase description: dpy-22 encodes a broadly expressed protein, homologous to the human transcriptional mediator protein TRAP230, which is involved in WNT and RAS signaling, as well as in dosage compensation; DPY-22 has a C-terminal glutamine-rich domain that is dispensable for inhibition of RAS-dependent cell differentiation, but is required for inhibition of BAR-1-dependent gene expression.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen                                                                       

F48E8.1 Aff_F48E8.1 P W All gene names: lon-1; F48E8.1; 3G567; CE01953; CE29046; CE30996; NM_065765; NM_065766; NM_171866; WBGene00003055; WP:CE01953; WP:CE29046; WP:CE30996 WormBase description: The lon-1 gene encodes a protein belonging to the PR-protein superfamily that is a target of DBL-1 (TGF-beta) signaling, and that regulates polyploidization and body length.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S4 Early genes, Wang et al                             
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

F52G3.5 Aff_F52G3.5 P W All gene names: F52G3.5; CE35720; WBGene00018713; WP:CE35720; XR588
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F53G2.1 Aff_F53G2.1 P W All gene names: F53G2.1; 2C783; CE10990; WBGene00018766; WP:CE10990
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

F54A5.1 Aff_F54A5.E P W All gene names: F54A5.1; F54A5.1.1; F54A5.1.2; F54A5.E; 1B465; CE20859; WBGene00018786; WP:CE20859
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, mixed oogenesis soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster B, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Climbing, Wang et al 2003                               
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F54C9.1 Aff_F54C9.1 P W All gene names: iff-2; F54C9.1; F54C9.1.1; F54C9.1.2; F54C9.1.3; 2I850; CE02249; NM_063406; WBGene00002065; WP:CE02249 WormBase description: initiation factor 5A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B                               

F55D12.1 Aff_F55D12.1 P W All gene names: F55D12.1; 1I459; CE05955; WBGene00010110; WP:CE05955
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05                                                                             

F56A11.3 Aff_F56A11.3 P W All gene names: efn-4; mab-26; F56A11.3; 4B319; CE29503; NM_067546; WBGene00001165; WP:CE29503 WormBase description: efn-4 encodes a member of the ephrin family of ligands that affects neuroblast migrations during closure of the ventral gastrulation cleft and subsequent epidermal morphogenesis, possibly functioning independently of EFN-1, EFN-2, EFN-3, and the VAB-1 receptor during morphogenesis; can interact with VAB-1 in vitro, and is expressed in neural and epidermal precursors at the 100-cell stage, in head neurons, pharyngeal cells, lateral and tail neurons, and in the ectoderm during epidermal enclosure.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order                                  

F56C11.6 Aff_F56C11.6 P W All gene names: F56C11.6; 1A647; CE17905; CE33402; WBGene00018958; WP:CE17905; WP:CE33402 WormBase description: carboxylesterases
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, wt herm vs wt herm                            
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster D, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F56H1.3 Aff_C04F1.3 P W All gene names: F56H1.3; 1G306; CE17914; WBGene00018994; WP:CE17914
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, ViswanathanM et al 2005  S2                             
                                              sir-2.1 regulated                                                                  

F57C12.5 Aff_F57C12.5 P W All gene names: mrp-1; sdf-14; F57C12.5; F57C12.5d.1; F57C12.5d.2; F57C12.5d.3; CE25015; CE29412; CE31189; CE34565; CE39102; NM_075721; WBGene00003407; WP:CE25015; WP:CE29412; WP:CE31189; WP:CE34565; WP:CE39102; XB196 WormBase description: ABC transporter
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F57F4.2 Aff_F57F4.2 P W All gene names: F57F4.2; 5G868; CE11340; WBGene00019016; WP:CE11340
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S3  genes pass                                   
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

F58D2.1 Aff_F58D2.1 P W All gene names: F58D2.1; 4N951; CE18782; WBGene00010240; WP:CE18782 WormBase description: C.elegans ZYG-11 protein like
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

F58E1.8 Aff_F58E1.8 P W All gene names: fbxb-18; F58E1.8; 2B974; CE11386; WBGene00019039; WP:CE11386 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains leucine-rich repeats.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F58G6.1 Aff_F58G6.1 P W All gene names: F58G6.1; F58G6.1.1; F58G6.1.2; 4K410; CE03428; WBGene00010272; WP:CE03428 WormBase description: amphiphysin like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

F58H1.5 Aff_F58H1.5 P W All gene names: F58H1.5; F58H1.5.1; F58H1.5.2; 5M441; CE06029; WBGene00010288; WP:CE06029
H12D21.8 Aff_H12D21.8 P W All gene names: H12D21.8; 5P385; CE19921; WBGene00010384; WP:CE19921
H20J04.6 Aff_H20J04_717.A P W All gene names: H20J04.6; H20J04.B; 2E613; CE20973; WBGene00019221; WP:CE20973
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

H28G03.1 Aff_H28G03.1 P W All gene names: H28G03.1; H28G03.1a.1; H28G03.1a.2; H28G03.1c.1; H28G03.1c.2; CE30079; CE30080; CE31190; WBGene00019249; WP:CE30079; WP:CE30080; WP:CE31190; XF837 WormBase description: RNA binding protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

H32C10.2 Aff_H32C10.B P W All gene names: H32C10.2; 4G697; CE21004; WBGene00019256; WP:CE21004
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B                                                                          

K02E10.2 Aff_K02E10.2 P W All gene names: hid-1; K02E10.2; CE04694; CE34327; NM_076053; WBGene00001844; WP:CE04694; WP:CE34327; XD111
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

K09C4.8 Aff_K09C4.8 P W All gene names: sul-1; tag-37; K09C4.8; CE04736; NM_076159; WBGene00006308; WP:CE04736; XD886 WormBase description: sul-1 encodes a member of the sulfatase family. WormBase CDS description: sulfatase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, ViswanathanM et al 2005 S2 Resveratrol                                
                                              regulate WT, Wang et al 2003  S4 TransientList, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

K10B3.1 Aff_K10B3.1 P W All gene names: K10B3.1; CE07364; CE37127; WBGene00019609; WP:CE07364; WP:CE37127; XD755
K12B6.1 Aff_K12B6.1 P W All gene names: K12B6.1; 5G787; CE12164; WBGene00019666; WP:CE12164
M03A8.1 Aff_M03A8.1 P W All gene names: dhs-28; M03A8.1; CE04770; NM_076745; WBGene00000991; WP:CE04770; XH437 WormBase description: dhs-28 encodes an ortholog of human 17-BETA-HYDROXYSTEROID DEHYDROGENASE 4 (HSD17B4; OMIM:601860, mutated in D-bifunctional protein deficiency), which contains a C-terminal SCP-2 sterol transfer domain; the deletion allele dhs-28(ok450) is superficially wild-type. WormBase CDS description: alcohol dehydrogenase; non-specific lipid transfer protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

M03A8.2 Aff_M03A8.2 P W All gene names: M03A8.2; CE30679; WBGene00019748; WP:CE30679; XH435
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

M04B2.5 Aff_M04B2.5 P W All gene names: M04B2.5; 4M273; CE36554; NM_069769; WBGene00006678; WP:CE36554 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

M117.5 Aff_M117.5 P W All gene names: fbxb-4; M117.5; 4M595; CE18086; WBGene00010921; WP:CE18086 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol                                                                        

R04B3.2 Aff_R04B3.2 P W All gene names: R04B3.2; CE28745; WBGene00019867; WP:CE28745; XD90 WormBase description: The R04B3.2 gene encodes an ortholog of the human gene LYSOSOMAL GLYCOSYLASPARAGINASE (AGA; OMIM:208400), which when mutated leads to aspartylglucosaminuria (OMIM:208400). WormBase CDS description: glycosylasparaginase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R05D3.9 Aff_R05D3.9 P W All gene names: R05D3.9; 3J452; CE31049; WBGene00019882; WP:CE31049
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 Climbing, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

R07B5.9 Aff_R07B5.8 P W All gene names: R07B5.9; CE31575; WBGene00011086; WP:CE31575
R07C3.5 Aff_R07C3.5 P W All gene names: R07C3.5; 2B217; CE12530; WBGene00019921; WP:CE12530
R08E5.3 Aff_R08E5.3 P W All gene names: R08E5.3; R08E5.3.1; R08E5.3.2; 5E251; CE12576; WBGene00019963; WP:CE12576
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R09H10.3 Aff_R09H10.3 P W All gene names: R09H10.3; 4L369; CE34083; WBGene00011181; WP:CE34083 WormBase description: R09H10.3 is orthologous to the human gene TRANSTHYRETIN (PREALBUMIN, AMYLOIDOSIS TYPE I) (TTR; OMIM:176300), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

R12C12.1 Aff_R12C12.1 P W All gene names: R12C12.1; R12C12.1a.1; R12C12.1a.2; 2G343; CE02846; CE33434; WBGene00020022; WP:CE02846; WP:CE33434 WormBase description: R12C12.1 is orthologous to human GLYCINE DECARBOXYLASE (GLDC; OMIM:238300), which when mutated leads to glycine encephalopathy.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster C, Reinke et al                               
                                              2004, mixed sperm soma, Reinke et al 2004, GO                                      
                                              categories, Reinke et al 2004, herm soma enriched                                  
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

T01B11.2 Aff_T01B11.2 P W All gene names: T01B11.2; 4J214; CE12894; CE33686; WBGene00020139; WP:CE12894; WP:CE33686 WormBase description: aminotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, Reinke et al 2004, fem3 enriched                                
                                              genes, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T01H10.8 Aff_T01H10.8 P W All gene names: T01H10.8; CE03607; WBGene00011361; WP:CE03607; XM748 WormBase description: Yeast hypothetical protein YCR32 like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

T03E6.7 Aff_T03E6.7 P W All gene names: cpl-1; T03E6.7; T03E6.7.1; T03E6.7.2; 5R74; CE16333; NM_074798; WBGene00000776; WP:CE16333 WormBase description: cpl-1 encodes a member of the cathepsin L-like cysteine protease family required for embryonic viability and normal growth; expressed in eggshells and throughout early embryos, accumulates in intestinal cells during late embryogenesis, and expressed in the cuticle, gonad, and pharynx later in development. WormBase CDS description: cathepsin-like protease
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class2                               
                                              shorten lifespan, Reinke et al 2004, fem3 enriched                                 
                                              genes, Reinke et al 2004, mixed sperm soma, Reinke et                              
                                              al 2004, GO categories, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

T04D1.4 Aff_T04D1.4 P W All gene names: tag-192; T04D1.4; 1F262; CE18196; WBGene00007053; WBGene00020213; WP:CE18196 WormBase description: helicase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph                                                               

T07C4.2 Aff_T07C4.2 P W All gene names: tbx-8; T07C4.2; 3L437; CE36891; NM_066886; WBGene00006545; WP:CE36891 WormBase description: Brachyury
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes                                 

T07D3.7 Aff_T07D3.7 P W All gene names: alg-2; T07D3.7; TO7D3.7; 2B167; CE13367; CE32063; NM_061436; NM_182192; WBGene00000106; WP:CE13367; WP:CE32063 WormBase description: alg-2 encodes a PAZ and PIWI-domain containing protein that is a member of the highly conserved eukaryotic RDE-1/AGO1/PIWI family of proteins that regulate posttranscriptional gene silencing (PTGS); ALG-2 functions with ALG-1 to control specific developmental timing events by positively regulating expression of small temporal RNAs (stRNAs) encoded by lin-4 and let-7; ALG-2 and ALG-1 are also required for RNAi in the germline, although they are not required for RNAi in the soma.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T08E11.5 Aff_T08E11.5 P W All gene names: T08E11.5; 2C113; CE33448; WBGene00020361; WP:CE33448
T22B7.3 Aff_T22B7.2 P W All gene names: T22B7.3; CE31242; WBGene00020672; WP:CE31242; XG273
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, IVb male soma enriched genes, Romagnolo et al                             
                                              2002  Fig3b Unkown                                                                 

T23G4.1 Aff_T23G4.1 P W All gene names: tlp-1; T23G4.1; T23G4.1.1; T23G4.1.2; 4O466; CE16453; NM_070246; WBGene00006580; WP:CE16453 WormBase description: The tlp-1 gene encodes a C2H2-type zinc finger of the Sp-1-like protein family, which is required for normal asymmetry in the divisions of the T.p and T.ap cells; such asymmetry, in turn, is required for normal, rounded tail morphology in adult males.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

T27D12.1 Aff_T27D12.1 P W All gene names: T27D12.1; T27D12.1.1; T27D12.1.2; T27D12.1.3; 2M135; CE06516; WBGene00012085; WP:CE06516 WormBase description: sodium/phosphate transporter
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol                              

W01G7.5 Aff_W01G7.5 P W All gene names: lem-2; W01G7.5; 2O355; CE20129; NM_064543; WBGene00002275; WP:CE20129
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes                                                  

W04D2.1 Aff_W04D2.1 P W All gene names: atn-1; W04D2.1; 5M963; CE06539; CE21256; NM_073726; NM_073727; WBGene00000228; WP:CE06539; WP:CE21256 WormBase description: atn-1 encodes an alpha-actinin homolog.
W05H9.1 Aff_W05H9.1 P W All gene names: W05H9.1; W05H9.1.1; W05H9.1.2; CE05036; WBGene00021048; WP:CE05036; XG891
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Zhang et al 2002, T1 mec-3 dependent genes,                             
                                              Zhang et al. 2002, Fig2b overexpressed in mec-3MT                                  

Y23H5A.1 Aff_Y23H5A.1 P W All gene names: crs-2; Y23H5A.1; 1D199; CE31095; CE32959; NM_170831; NM_170832; WBGene00000801; WP:CE31095; WP:CE32959 WormBase description: crs-2 encodes a predicted cysteinyl-tRNA synthetase required for fertility.
Y34D9A.4 Aff_Y34D9A_151.A P W All gene names: spd-1; Y34D9A.4; 1B504; CE37061; NM_058408; WBGene00004952; WBGene00021330; WP:CE37061 WormBase description: spd-1 encodes a homolog of human PRC1, tobacco MAP-65, and S. cerevisiae Ase1p that is required for embryonic viability due to its requirement for mitotic spindle stability during the late stages of cytokinesis; SPD-1 is also required for fertility, gonad development, locomotion, and vulval development.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, Fig2b shared gemlines,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, wt herm vs wt                              
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

Y37A1B.5 Aff_Y37A1B.5 P W All gene names: Y37A1B.5; 4O819; CE19075; WBGene00012538; WP:CE19075
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y41D4A.4 Aff_Y41D4A_5905.B P W All gene names: Y41D4A.4; Y41D4A.4.1; Y41D4A.4.2; 4C515; CE21847; WBGene00021506; WP:CE21847
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y43F8C.13 Aff_Y116F11.ZZ9 P W All gene names: Y43F8C.13; 5U164; CE21911; WBGene00012834; WP:CE21911 WormBase description: Inosine-uridine preferring nucleoside hydrolase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              herm enriched gen, Reinke et al 2004, IVb male soma                                
                                              enriched genes                                                                     

Y45F10D.10 Aff_Y45F10D.10 P W All gene names: Y45F10D.10; 4O550; CE16648; WBGene00012889; WP:CE16648
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y48E1A.1 Aff_Y48E1A.1 P W All gene names: Y48E1A.1; 2N962; CE22157; CE37860; WBGene00012999; WP:CE22157; WP:CE37860 WormBase description: DNA-directed RNA polymerase I largest subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph                                                                            

Y54E5A.1 Aff_Y105E8A.AA P W All gene names: Y54E5A.1; 1P280; CE28791; WBGene00013197; WP:CE28791
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

Y55F3AR.2 Aff_Y55F3A_750.E P W All gene names: Y55F3AR.2; Y55F3A_750.E; 4B849; CE34418; WBGene00021933; WP:CE34418
Y57A10A.19 Aff_Y57A10A.S P W All gene names: Y57A10A.19; 2M517; CE25503; WBGene00013260; WP:CE25503
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order                                               

Y58G8A.4 Aff_Y58G8A_208.A P W All gene names: Y58G8A.4; 5A756; CE33345; CE36962; WBGene00021983; WP:CE33345; WP:CE36962
Y63D3A.2 Aff_Y63D3A.2 P W All gene names: fbxb-100; Y63D3A.2; 1O684; CE20333; WBGene00013403; WP:CE20333 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

Y71F9AL.6 Aff_Y71F9A_262.B P W All gene names: Y71F9AL.6; 1D459; CE22840; WBGene00022111; WP:CE22840
Y71F9B.5 Aff_Y71F9B_299.B P W All gene names: lin-17; Y71F9B.5; Y71F9B.5b.1; Y71F9B.5b.2; Y71F9B_287.C; 1D285; CE25569; CE28810; NM_058627; WBGene00003006; WP:CE25569; WP:CE28810 WormBase description: lin-17 encodes one of four C. elegans Frizzled homologs, integral membrane proteins that contain an external cysteine rich domain (CRD) and seven transmembrane domains and that function in a wide variety of species as receptors for Wnt glycoprotein signaling molecules; LIN-17 activity is required for specifying the polarity of a number of asymmetric cell divisions that, in C. elegans, are essential for development of such structures as the vulva, somatic gonad, and tail; LIN-17 is also required for the proper polarity of neuronal migrations along the anterior-posterior axis; genetic interactions indicate that LIN-17 likely functions as a receptor for several different Wnt molecules, including LIN-44 and EGL-20, and that in specifying cell fates, the LIN-17-mediated signaling pathway often functions redundantly with other signaling pathways, including the RTK/Ras pathway; a LIN-17 translational reporter fusion shows membrane-associated expression in all of the Pn.pxx vulval precursor cells, in the descendants of V6 and T in males, in the P11.p and B cells, as well as their daughters, and granddaughters, and weakly in P10.p and its daughters; the reporter fusion does not reveal expression in P7.p, Z1, Z4, and T
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

Y76A2B.3 Aff_Y76A2B.3 P W All gene names: Y76A2B.3; 3O630; CE19275; WBGene00013575; WP:CE19275 WormBase description: AMP-binding enzyme
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

ZK185.2 Aff_ZK185.2 P W All gene names: ZK185.2; 4F305; CE31747; WBGene00022682; WP:CE31747
ZK512.3 Aff_ZK512.3 P W All gene names: ced-11; ZK512.3; 3K213; CE00409; NM_066620; WBGene00000425; WP:CE00409 WormBase description: The ced-11 gene encodes a predicted transmembrane ion channel related to the long transient receptor potential channel (LTRPC) subfamily of TRP channels found in Drosophila and mammals; CED-11 functions as a downstream effector in the programmed cell death pathway and may play a role in affecting the morphological changes seen in the nucleus, cytoplasm, and plasma membrane of apoptotic cells.
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 TransientList,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

ZK593.1 Aff_ZK593.1 P W All gene names: ZK593.1; 4L677; CE24731; WBGene00014001; WP:CE24731 WormBase description: pyruvate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, GO categories, Reinke et                              
                                              al 2004, herm soma enriched genes, ViswanathanM et al                              
                                              2005  S2 sir-2.1 regulated                                                         

ZK938.2 Aff_ZK938.2 P W All gene names: ZK938.2; 2K128; CE02397; WBGene00014159; WP:CE02397
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol