| Gene list file name: | Reinke2004_Fig5_list-of-genes-in-cluster-order.txt |
|---|---|
| Type of gene identifier: | Cosmid name |
| Description: | Reinke et al 2004, Fig5 list of genes in cluster order |
| Organism: | Caenorhabditis elegans (nematode) |
| Gene list type: | Experimental |
Gene name Source Gene ID Annotation Date Added by
3R5.1 3R5.1 P W All gene names: 3R5.1; 3O869; CE24758; WBGene00007065; WP:CE24758
Member of lists ( lists):
mount02, R=0.15, Aging.p01, Germ
line-enriched, JW Dauer Enriched AdjT0 vs AdjT12,
PJRPAPER-Chromosome III Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
AC3.2 AC3.2 P W All gene names: ugt-49; AC3.2; 5K853; CE37871; WBGene00007070; WP:CE37871 WormBase description: UDP-glucuronosyltransferase
Member of lists ( lists):
JW UDP-glucoronosyltransferase, Lipid
metabolism genes, Proteome Cell Role (Oct 2000)- Lipid,
Sterol & Fat, Proteome Funct Class (Mar
2000)-Transferase, Proteome LG V [May 2002], Reinke et
al 2004, list of genes in cluster order
AC3.3 AC3.3 P W All gene names: abu-1; pqn-1; AC3.3; 5K858; CE05133; NM_073266; WBGene00000024; WP:CE05133 WormBase description: abu-1 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-1 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-1 may help protect the organism from damage by improperly folded nascent protein.
Member of lists ( lists):
mount29, R=0.53, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG V
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
AC3.5 AC3.5 P W All gene names: AC3.5; 5K873; CE36372; WBGene00007071; WP:CE36372 WormBase description: glutamyl aminopeptidase
Member of lists ( lists):
mount08, R=0.21, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ No8 First 1500, PJ No 2
first 1500, PJRPAPER-Chromosome V Genes,
PJRPAPER-Protein Degradation, Proteases, Proteome Cell
Role (Oct 2000)- Protein Degradation, Proteome Funct
Class (Mar 2000)-Hydrolase, Proteome LG V [May 2002],
Proteome Localization (Oct 2000)-Cytoplasmic, Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, wmyst
AC3.7 AC3.7 P W All gene names: dod-15; ugt-1; AC3.7; 5K877; CE05137; NM_073270; WBGene00007072; WP:CE05137 WormBase description: UDP-glucuronosyltransferase
Member of lists ( lists):
mount08, R=0.21, age-1 daf-2 comm 999
InAge1daf2ClusterBD 133., Aging p < .01, Aging.p01, Bea
UDP-glucuronosyltransferase, FP 645 Intestine specific
genes, FP 1938 Intestine genes, JW Dauer Enriched by
AdjDT0 vs L1T0, JW UDP-glucoronosyltransferase, Lipid
metabolism genes, PJRPAPER-Chromosome V Genes,
PJRPAPER-Lipid, fatty-acid and sterol metabolism,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Lipid, Sterol & Fat, Proteome Funct
Class (Mar 2000)-Transferase, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, sir2.1ok434 283 min, sir2.1--ok434all 558 min,
sir2.1-- 297 min, YK genes 95% different in muscle and
intestin, YK intestinal genes (p<.001), YK
intestine-specific genes
AC8.1 AC8.1 P W All gene names: pme-6; pme-6ps; AC8.1; AC8.D; CE33962; NM_075638; WBGene00004054; WP:CE33962; XA862 WormBase description: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region. ; Poly(ADP-ribose) polymerase catalytic region.
Member of lists ( lists):
mount04, R=0.41, mount11, R=0.38,
male99, Male-enriched, Proteome Cell Role (Oct 2000)-
Protein Modificatio, Proteome Funct Class (Mar
2000)-Transferase, Proteome LG V [May 2002], Proteome
Localization (Oct 2000)-Nuclear, Reinke et al 2004,
list of genes in cluster order, YK genes 95% different
in muscle and intestin
AC8.2 AC8.2 P W All gene names: AC8.2; AC8.B; WBGene00007074; XA867
Member of lists ( lists):
Protein kinases, Proteome Cell Role
(Oct 2000)- Signal Transduction, Proteome Funct Class
(Mar 2000)-Protein Kinase, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order
AC8.3 AC8.3 P W All gene names: AC8.3; AC8.F; CE37737; WBGene00007075; WP:CE37737; XA844
Member of lists ( lists):
mount01, R=0.15, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG V [May
2002], Reinke et al 2004, list of genes in cluster
order
AH10.1 AH10.1 P W All gene names: AH10.1; 5O629; CE07655; WBGene00007082; WP:CE07655 WormBase description: 4-coumarate:coenzyme A ligase
Member of lists ( lists):
mount04, R=0.41, Aging p < .01,
Biosynthesis, Energy generation genes, josh laura1/2
common, male99, Male-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome V Genes, PJRPAPER-Energy
Generation, PJRPAPER-Male Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Energy Generation, Proteome Funct
Class (Mar 2000)-Ligase, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Sperm-enriched, Valerie Reinke's 11927 genes,
wmyst
AH6.2 AH6.2 P W All gene names: AH6.2; 2J804; CE01456; WBGene00007080; WP:CE01456
Member of lists ( lists):
771-Egg-99-min, Bea ras L2 mixed 561,
mount04, R=0.41, Biosynthesis, JW Dauer ANOVA 2430 v4,
JW Dauer Recovery Specific 1984, JW Down 540, JW Down
Early 378, JW Mitochondrial Carrier Protein,
Mitochondrial, PJ 1158IntestineMuscleTTEST0.001, PJ
2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRGDPAPER-Yeast Mito
(All)-Worm Homologues, PJRPAPER-Chromosome II Genes,
PJRPAPER-Mitochondrial, PJRPAPER-Muslce (L1) negative
controls-2, Proteome Cell Role (Oct 2000)- Small
Molecule Tran, Proteome Funct Class (Mar 2000)-Active
Transporter, Proteome Funct Class (Mar
2000)-Transporter, Proteome LG II [May 2002], Proteome
Localization (Oct 2000)-Mitochondrial, Proteome
Localization (Oct 2000)-Mitochondrial inn, Proteome
Subcellular Localization - Mitochond, Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, wmyst, YK genes 95% different in
muscle and intestin
AH6.3 AH6.3 P W All gene names: AH6.3; 2J805; CE01457; WBGene00007081; WP:CE01457
Member of lists ( lists):
male99, Male-enriched, PJ 1235
intestine-sepcific, PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4212 IntestineMuscleTtest0.05, PJ
4746 intestinal gene Con95, PJ No10-1-R16 First 1500,
PJRPAPER-Chromosome II Genes, PJRPAPER-Male Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome Funct
Class (Mar 2000)-DNA-binding Domain, Proteome LG II
[May 2002], Proteome Localization (Oct 2000)-Nuclear,
Reinke et al 2004, list of genes in cluster order
AH6.5 AH6.5 P W All gene names: mex-6; AH6.5; 2J815; CE26846; NM_063642; WBGene00003231; WP:CE26846 WormBase description: mex-6 encodes a CCCH zinc-finger protein highly similar to MEX-5 that functions with MEX-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish PIE-1, MEX-1, and POS-1 asymmetry in embryos, and also affects formation of intestinal cells; MEX-6 and MEX-5 may act downstream of the PAR proteins. WormBase CDS description: zinc finger protein
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Germ line-enriched, PJ 1158IntestineMuscleTTEST0.001,
PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ No5 first 1500,
PJRPAPER-Chromosome II Genes, Proteome LG II [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
AH9.2 AH9.2 P W All gene names: crn-4; AH9.2; CE03858; NM_076014; WBGene00000797; WP:CE03858; XC876
Member of lists ( lists):
Proteome Cell Role (Oct 2000)- Genes
of Unknown Ce, Proteome LG X [May 2002], Reinke et al
2004, list of genes in cluster order
B0001.2 B0001.2 P W All gene names: B0001.2; 4M912; CE36776; WBGene00007087; WP:CE36776
Member of lists ( lists):
mount02, R=0.15, GD-Chol "\/",
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, GD-U29-Sp
(wrt L1 95), Germ line-enriched, josh laura1/2 common,
Peter's Acetyl-P001 Superset, PJ No8 First 1500, PJ
No10-1-R15 First 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome IV Genes,
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zU29WLev
down-up, PJRPAPER-zU29-Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0001.3 B0001.3 P W All gene names: B0001.3; 4M908; CE29523; WBGene00007088; WP:CE29523
Member of lists ( lists):
mount02, R=0.15, Germ line-enriched,
JW SAGE p<0.001 (292), PJ No 2 first 1500,
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
B0001.7 B0001.7 P W All gene names: B0001.7; 4M916; CE05145; WBGene00007092; WP:CE05145
Member of lists ( lists):
mount07, R=0.43, Aging p < .01,
Art-1-7, operon first genes, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome IV Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0019.1 B0019.1 P W All gene names: amx-2; B0019.1; 1N352; CE32294; NM_060835; WBGene00000138; WP:CE32294
Member of lists ( lists):
mount01, R=0.15, Amine oxidase, PJ No
2 first 1500, PJRPAPER-Chromosome I Genes,
PJRPAPER-Secretory Vesicles, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG I [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0019.2 B0019.2 P W All gene names: B0019.2; 1N373; CE37075; WBGene00007094; WP:CE37075
Member of lists ( lists):
mount11, R=0.38, GD-GABA NSD/AMB
(Anova/TTest), GD-U25 muscle, Peter's Neuro (95;
06-18-01), Peter's Neuro (99; 06-18-01), PJ No5 first
1500, PJ No 2 first 1500, PJRPAPER-Chromosome I Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0024.1 B0024.1 P W All gene names: col-149; B0024.1; 5K772; CE05146; NM_073245; WBGene00000722; WP:CE05146 WormBase description: collagen
Member of lists ( lists):
mount16, R=0.40, Collagen, GD-L2
Muscle Genes, GDPAPER-Prelim Mixed Muscle, JW 1703
merged Peters zMuscle 8-02, JW Dauer ANOVA 2430 v4, JW
Dauer Recovery Specific 1984, JW Late 325, JW SAGE
mixed stage, Peter's All Muscle Genes (1 16 01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's UP-Reg
Muscle (10 25 00), PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No5 first 1500, PJ No8
First 1500, PJ No10-1-R16 First 1500, PJ No10-1-R15
First 1500, PJ No 2 first 1500, PJRGDPAPER-Collagens
(All), PJRGDPAPER-Collagens (Non-BM),
PJRGDPAPER-Collagens (unspecified), PJRPAPER-Chromosome
V Genes, PJRPAPER-Collagens, PJRPAPER-Cuticle
Collagens, PJRPAPER-Cuticle Collogens Grp1a,
PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0024.10 B0024.10 P W All gene names: B0024.10; B0024.10.1; B0024.10.2; 5K796; CE05154; WBGene00007100; WP:CE05154
Member of lists ( lists):
1214-L2-99-min, mount02, R=0.15,
Art-1-7, josh laura1/2 common, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome V Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG V [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, sir2.1ok434 283 min, sir2.1--ok434all
558 min, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
B0024.13 B0024.13 P W All gene names: B0024.13; 5K803; CE05157; CE35376; WBGene00007102; WP:CE05157; WP:CE35376
Member of lists ( lists):
mount07, R=0.43, Art-1-7, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
B0024.2 B0024.2 P W All gene names: col-150; B0024.2; 5K774; CE05147; NM_073246; WBGene00000723; WP:CE05147 WormBase description: collagen
Member of lists ( lists):
mount16, R=0.40, age-1 daf-2 comm 999
InAge1daf2ClusterBD 133., Collagen, GD-Chol UP, GD-Lev
Muscle Genes, GD-Lev-Sp (wrt U29 95), GD-Lev-Sp (wrt wt
95), Peter's Acetyl-P001 Superset, Peter's Lev UP
unc-29 DOWN (anova+10), PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R16 First 1500, PJ No10-1-R15 First
1500, PJRGDPAPER-Collagens (All), PJRGDPAPER-Collagens
(Non-BM), PJRGDPAPER-Collagens (unspecified),
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-Collagens, PJRPAPER-Cuticle Collagens,
PJRPAPER-Cuticle Collogens Grp1a,
PJRPAPER-xLEV-specific (wrtWT), PJRPAPER-zLev-Genes,
PJRPAPER-zU29WLev up, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
B0025.2 B0025.2 P W All gene names: csn-2; B0025.2; B0025.2.1; B0025.2.2; B0025.2.3; 1G601; CE27562; NM_059339; WBGene00000814; WP:CE27562 WormBase description: csn-2 encodes a homolog of COP9 signalosome complex subunit 2 that affects embryonic viability and growth rate.
Member of lists ( lists):
mount02, R=0.15, FP 464 Muscle
specific genes, FP 1311 similar in intestine and
muscle, FP 1938 Intestine genes, Fraser's 50-80% Emb
(02-01-01), Fraser's Complete RNAi List, Fraser's Slow
Growth (02-01-01), GD-Chol "/\", GD-Chol Down, GD-GABA
"\/" (Anova/TTest), GD-L1-Sp (99.0 M-W) Muscle Genes,
GD-L1 Muscle Genes, GD-L1-Sp (95 TTest), GD-L1-Sp (wrt
U29 95), GD-Lev Muscle Genes, GD-Musc muscle, GD-U25
muscle, GD-U29-Sp (wrt L1 95), GD-U29 muscle genes,
GD-U29-Sp (wrt Lev 95), GD-WT-Sp (wrt Lev 95), Germ
line-enriched, JW 1703 merged Peters zMuscle 8-02,
Peter's Acetyl-P001 Superset, Peter's All Muscle Genes
(1 16 01), Peter's Dorsal List (02-19-01), Peter's L1
Muscle Genes (95 Con; 02-01-01), Peter's L1-Dorsal+Excr
avg (99.9), Peter's L2 Muscle (95 Con; 02-01-01),
Peter's Musc-non-neuro(sp&enri;fr99.9 Superset),
Peter's Neuro (95; 06-18-01), Peter's Neuro (99;
06-18-01), Peter's Neuro (99.9; 06-18-01), Peter's
Neuro-non-musc(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, Peter's
ventral muscle-Specific (p<0.05), Peter's
Ventral-Specific L1 (95) list (02-28-01), Peters
L1-Specific, PJ 836 muscle and intestine in common, PJ
1005I0.05M0.001, PJ 1445 M0.05I0.001, PJ 1617 Muscle
and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No8 First 1500, PJ
No10-1-R16 First 1500, PJ No10-1-R15 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome I Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1 Muscle Genes
(1364), PJRPAPER-xWT-specific (wrtLEV),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1-Specific
Genes, PJRPAPER-zL1 Muscle Genes, PJRPAPER-zL1vL2 nsd,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev down,
PJRPAPER-zU29WLev up-down, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin,
YK intestinal genes (p<.001), YK muscle-specific genes,
YK Similar muscle and intestine genes
B0034.4 B0034.4 P W All gene names: B0034.4; 2G258; CE02412; WBGene00015004; WP:CE02412
Member of lists ( lists):
mount04, R=0.41, PJRPAPER-Chromosome
II Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
B0035.11 B0035.11 P W All gene names: B0035.11; 4M94; CE05166; WBGene00007110; WP:CE05166 WormBase description: Yeast LEO1 protein like
Member of lists ( lists):
mount02, R=0.15, stuart layer13,
Oocyte-enriched, PJ 4746 intestinal gene Con95, PJ
No10-1-R16 First 1500, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Oocyte Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
B0035.12 B0035.12 P W All gene names: B0035.12; B0035.12.1; B0035.12.2; 4M96; CE05167; WBGene00007111; WP:CE05167 WormBase description: polyadenylate-binding protein like
Member of lists ( lists):
mount02, R=0.15, stuart layer7,
stuart layer13, Germ line-enriched, josh laura2 4/8
common, PJRPAPER-Chromosome IV Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome Funct
Class (Mar 2000)-RNA-Binding Subuni, Proteome LG IV
[May 2002], Proteome Localization (Oct 2000)-Nuclear,
Reinke et al 2004, list of genes in cluster order, RNA
binding, rosetta, Valerie Reinke's 11927 genes
B0035.3 B0035.3 P W All gene names: B0035.3; 4M80; CE05161; WBGene00007106; WP:CE05161 WormBase description: viral non-structural protein like
Member of lists ( lists):
mount07, R=0.43, Art-1-7, daf-16
p<.001, 7-01, FP 1938 Intestine genes, josh laura1/2
common, operon first genes, Peter's L2 Muscle (95 Con;
02-01-01), PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, YK intestinal genes (p<.001), YK Similar muscle
and intestine genes
B0035.6 B0035.6 P W All gene names: B0035.6; 4M87; CE20443; WBGene00007109; WP:CE20443
Member of lists ( lists):
mount02, R=0.15, Art-1-7, JW Dauer
Enriched by AdjDT0 vs L1T0, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
B0035.7 B0035.7 P W All gene names: his-47; B0035.7; 4M88; NM_069730; WBGene00001921; his 12 WormBase description: his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. WormBase CDS description: histone H2A
Member of lists ( lists):
mount11, R=0.38, stuart layer13,
Aging p < .01, Art-1-7, GDPAPER-Prelim Mixed Muscle,
Histone genes, Neuro-1 L1 Upreg (11 20 00), Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, Peter's
UP-Reg Muscle (10 25 00), PJ 1445 M0.05I0.001, PJ 1617
Muscle and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJ No10-1-R16 First 1500, Proteome Cell Role
(Oct 2000)- Chromatin/Chromosom, Proteome Funct Class
(Mar 2000)-DNA-binding Domain, Proteome LG IV [May
2002], Proteome Localization (Oct 2000)-Nuclear, Reinke
et al 2004, list of genes in cluster order, wmyst, YK
genes 95% different in muscle and intestin
B0041.5 B0041.5 P W All gene names: B0041.5; 1F218; CE29527; WBGene00015009; WP:CE29527
Member of lists ( lists):
204 diff min, 684 N2 hs min (L2), 1003
N2 hs min (egg + L2), Bea ras L2 mixed 561, bea RasL2
486 genes, mount11, R=0.38, Bea Ras L2 time course
(99%), daf-16 p<.001, 7-01, daf-16 (p < .001), FP 645
Intestine specific genes, FP 1311 similar in intestine
and muscle, FP 1938 Intestine genes, GD-Chol Down,
GD-GABA NSD/AMB (Anova/TTest), GD-L1 Muscle Genes,
GD-Musc muscle, GD-WT-Sp (wrt Lev 95), JW 1703 merged
Peters zMuscle 8-02, JW Dauer Enriched by AdjDT0 vs
L1T0, L2 Hs genes 99.9, Peter's All Muscle Genes (1 16
01), Peter's Dorsal List (02-19-01), Peter's
L1-Dorsal+Excr avg (99.9), Peter's L1 Muscle Genes (95
Con; 02-01-01), Peter's L2 Muscle (95 Con; 02-01-01),
Peter's Muscle-Neuro Ubiq (99.9 Superset list), Peter's
Neuro (95; 06-18-01), Peter's Neuro (99; 06-18-01),
Peter's Superset of L1-L2 Genes (considering 99.9, PJ
1005I0.05M0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No10-1-R16 First 1500, PJ No
2 first 1500, PJRPAPER-1329 L1 Muscle Genes (Chromo I),
PJRPAPER-1329 L1 Muscle List (genes within 10,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome I Genes,
PJRPAPER-CLustered muscle genes (12 16 01), PJRPAPER-L1
Muscle Genes (unknowns from 1329, PJRPAPER-L1 Muscle
Genes (95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtLEV), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zU29WLev down,
PJRPAPERz-L1 Cluster (10 kb; no para or ops),
PJRPAPERz-L1 Clustered(without Paralogues wit, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
I [May 2002], rasl2, Reinke et al 2004, list of genes
in cluster order, rosetta, YK genes 95% different in
muscle and intestin, YK intestinal genes (p<.001), YK
intestine-specific genes, YK Similar muscle and
intestine genes
B0041.6 B0041.6 P W All gene names: ptps-1; B0041.6; 1F220; CE34237; CE39541; WBGene00015010; WP:CE34237; WP:CE39541 WormBase description: B0041.6 is orthologous to the human gene 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTS; OMIM:261640), which when mutated leads to disease.
Member of lists ( lists):
mount19, R=0.29, age1-216daf2-1384All
In age1daf2 modif 703 mi, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterB, FP 1938 Intestine genes,
GD-Chol "\/", GD-U29 muscle genes, GD-U29-Sp (wrt Lev
95), GD-U29-Sp (wrt L1 95), Peter's Acetyl-P001
Superset, Peter's Dorsal List (02-19-01), Peter's
Excretory-Specific (p<0.05), Peter's Excretory-SPecific
med rank (95), Peter's L1-Dorsal+Excr avg (99.9), PJ
1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome I Genes, PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zU29WLev down-up,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK intestinal genes
(p<.001), YK Similar muscle and intestine genes
B0198.3 B0198.3 P W All gene names: B0198.3; CE37308; WBGene00007116; WP:CE37308; XM662 WormBase description: protein kinase
Member of lists ( lists):
mount09, R=0.16, PJRPAPER-Chromosome
X Genes, PJRPAPER-Serine/Threonine Kinases,
PJRPAPER-Tyrosine Kinase, Protein kinases, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome
Funct Class (Mar 2000)-Protein Kinase, Proteome LG X
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
B0205.1 B0205.1 P W All gene names: B0205.1; 1L292; CE34238; CE36908; WBGene00015017; WP:CE34238; WP:CE36908
Member of lists ( lists):
1214-L2-99-min, Bea ras L2 mixed 561,
bea RasL2 486 genes, mount11, R=0.38, stuart
layer13, Art-1-7, Bea L2 mixed 709, Bea Ras L2 time
course (99%), PJRPAPER-Chromosome I Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
I [May 2002], rasl2, Reinke et al 2004, list of genes
in cluster order, rosetta, SylviaAll 144, Valerie
Reinke's 11927 genes
B0205.4 B0205.4 P W All gene names: B0205.4; 1L320; CE39201; WBGene00015019; WP:CE39201 WormBase description: The B0205.4 gene encodes a homolog of the human gene FUT1, which when mutated leads to leukocyte adhesion deficiency, type II (OMIM:266265).
Member of lists ( lists):
mount14, R=0.38, Aging.p01, JW Dauer
ANOVA 2430 v4, JW Dauer Recovery Specific 1984, JW Late
325, PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome I Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG I
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
B0205.6 B0205.6 P W All gene names: B0205.6; 1L315; CE30405; WBGene00015021; WP:CE30405 WormBase description: aminotransferase
Member of lists ( lists):
mount02, R=0.15, stuart layer7,
GD-Chol Down, GD-GABA NSD/AMB (Anova/TTest), GD-Musc
muscle, GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes,
Peter's Acetyl-P001 Superset, Peter's L1 Muscle Genes
(95 Con; 02-01-01), Peter's Neuro (95; 06-18-01),
PJRGDPAPER-Yeast Mito (All)-Worm Homologues,
PJRGDPAPER-Yeast Mito (Prokaryotic)-Worm Homo,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome I Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-zU29WLev down,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Other Metabolism, Proteome LG I [May 2002], Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, wmyst, YK genes 95%
different in muscle and intestin
B0207.6 B0207.6 P W All gene names: B0207.6; 1G512; CE30229; WBGene00015029; WP:CE30229
Member of lists ( lists):
mount11, R=0.38, stuart layer13,
Oocyte-enriched, PJRPAPER-Chromosome I Genes,
PJRPAPER-Oocyte Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, wmyst
B0212.3 B0212.3 P W All gene names: B0212.3; 4E307; CE16769; WBGene00015037; WP:CE16769
Member of lists ( lists):
204 diff min, 771-Egg-99-min,
mount11, R=0.38, stuart layer13, Art-1-7,
PJRPAPER-Chromosome IV Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta, YK
genes 95% different in muscle and intestin
B0218.6 B0218.6 P W All gene names: clec-51; B0218.6; 4I928; CE06689; WBGene00015050; WP:CE06689 WormBase description: 7TM chemoreceptor, clec family
Member of lists ( lists):
mount08, R=0.21, Bea lectin, FP 645
Intestine specific genes, FP 1938 Intestine genes,
Male-enriched, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Extracellular (not cell wall or collagen),
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome Funct Class (Mar 2000)-Small Molecule Bin,
Proteome LG IV [May 2002], Proteome Localization (Oct
2000)-Extracellular (ex, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin,
YK intestinal genes (p<.001), YK intestine-specific
genes
B0218.7 B0218.7 P W All gene names: B0218.7; 4I930; CE06690; WBGene00015051; WP:CE06690
Member of lists ( lists):
mount04, R=0.41, Art-1-7, josh
laura1/2 common, male99, Male-enriched,
PJRPAPER-Chromosome IV Genes, PJRPAPER-Male Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
IV [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes
B0222.6 B0222.6 P W All gene names: col-144; B0222.6; 5J640; CE30585; NM_072973; WBGene00000717; WP:CE30585
Member of lists ( lists):
mount16, R=0.40, stuart layer12,
age1-216daf2-1384All In age1daf2 modif 703 mi,
Collagen, daf-2 1384 InAgingSetMin3ClusterA, daf-2 1384
min, GD-Chol UP, GD-GABA NSD/AMB (Anova/TTest), GD-L1
Muscle Genes, GD-L1-Sp (wrt U29 95), GD-L2 Muscle
Genes, GD-Lev Muscle Genes, GD-Lev-Sp (wrt U29 95),
GDPAPER-Prelim Mixed Muscle, JW 1703 merged Peters
zMuscle 8-02, JW Climbing 386, JW Dauer ANOVA 2430 v4,
JW Dauer Recovery Specific 1984, Neuro-1 L1 Upreg (11
20 00), Peter's Acetyl-P001 Superset, Peter's All
Muscle Genes (1 16 01), Peter's Dorsal List (02-19-01),
Peter's L1 Muscle Genes (95 Con; 02-01-01), Peter's
L1-Dorsal+Excr avg (99.9), Peter's L2 Muscle (95 Con;
02-01-01), Peter's Superset of L1-L2 Genes (considering
99.9, Peter's UP-Reg Muscle (10 25 00), PJ 836 muscle
and intestine in common, PJ 1005I0.05M0.001, PJ 1445
M0.05I0.001, PJ 1617 Muscle and intestine in common,
PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500, PJ No5 first
1500, PJ No8 First 1500, PJ No10-1-R16 First 1500,
PJRGDPAPER-Collagens (All), PJRGDPAPER-Collagens
(Non-BM), PJRGDPAPER-Collagens (unspecified),
PJRPAPER-1329 L1 Muscle List (genes within 10,
PJRPAPER-1329 L1 Muscle Genes (Chromo V),
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-Collagens, PJRPAPER-Cuticle Collagens,
PJRPAPER-Cuticle Collogens Grp1a, PJRPAPER-L1 Muscle
Genes (95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev up, PJRPAPERz-L1
Cluster (10 kb; no para or ops), PJRPAPERz-L1
Clustered(without Paralogues wit, PJRPAPERz-L2
Clustered (inc Operons not Paral, PJRPAPERz-L2
Clustered(without Paralogues wit, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG V [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
B0222.7 B0222.7 P W All gene names: col-145; B0222.7; 5J642; CE06698; NM_072974; WBGene00000718; WP:CE06698
Member of lists ( lists):
mount16, R=0.40, stuart layer12,
Collagen, GD-Chol UP, GD-L1 Muscle Genes, GD-L1-Sp (wrt
U29 95), GD-L2 Muscle Genes, GD-Lev Muscle Genes,
GD-Lev-Sp (wrt U29 95), JW 1703 merged Peters zMuscle
8-02, JW Climbing 386, JW Dauer ANOVA 2430 v4, JW Dauer
Recovery Specific 1984, Neuro-1 L1 Upreg (11 20 00),
Peter's Acetyl-P001 Superset, Peter's All Muscle Genes
(1 16 01), Peter's Dorsal List (02-19-01), Peter's L1
Muscle Genes (95 Con; 02-01-01), Peter's L1-Dorsal+Excr
avg (99.9), Peter's L2 Muscle (95 Con; 02-01-01),
Peter's Lev UP unc-29 DOWN (anova+10), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, PJ 836
muscle and intestine in common, PJ 1005I0.05M0.001, PJ
1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500, PJ No5 first
1500, PJ No8 First 1500, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJRGDPAPER-Collagens (All),
PJRGDPAPER-Collagens (Non-BM), PJRGDPAPER-Collagens
(unspecified), PJRPAPER-1329 L1 Muscle List (genes
within 10, PJRPAPER-1329 L1 Muscle Genes (Chromo V),
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-Collagens, PJRPAPER-Cuticle Collagens,
PJRPAPER-Cuticle Collogens Grp1a, PJRPAPER-L1 Muscle
Genes (95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev up, PJRPAPERz-L1
Cluster (10 kb; no para or ops), PJRPAPERz-L1
Clustered(without Paralogues wit, PJRPAPERz-L2
Clustered (inc Operons not Paral, PJRPAPERz-L2
Clustered(without Paralogues wit, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG V [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, sir2.1--ok434all 558 min, sir2.1-- 297
min, Valerie Reinke's 11927 genes
B0222.8 B0222.8 P W All gene names: col-10; B0222.8; 5J644; CE06699; NM_072975; WBGene00000599; WP:CE06699 WormBase description: col-10 encodes a collagen protein; expressed exclusively in hypodermal cells
Member of lists ( lists):
mount16, R=0.40, stuart layer12,
Collagen, FP 464 Muscle specific genes, GD-GABA NSD/AMB
(Anova/TTest), GD-L1 Muscle Genes, GD-L1-Sp (wrt U29
95), GD-L2 Muscle Genes, GD-Lev Muscle Genes, GD-Lev-Sp
(wrt U29 95), GD-Musc muscle, GD-U29 muscle genes, JW
1703 merged Peters zMuscle 8-02, JW Climbing 386, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
Neuro-1 L1 Upreg (11 20 00), Peter's Acetyl-P001
Superset, Peter's All Muscle Genes (1 16 01), Peter's
Dorsal List (02-19-01), Peter's L1-Dorsal+Excr avg
(99.9), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's Superset
of L1-L2 Genes (considering 99.9, PJ 836 muscle and
intestine in common, PJ 1005I0.05M0.001, PJ 1445
M0.05I0.001, PJ 1617 Muscle and intestine in common,
PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500, PJ No5 first
1500, PJ No8 First 1500, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJRGDPAPER-Collagens (All),
PJRGDPAPER-Collagens (Non-BM), PJRGDPAPER-Collagens
(unspecified), PJRPAPER-1329 L1 Muscle Genes (Chromo
V), PJRPAPER-1329 L1 Muscle List (genes within 10,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-Cuticle Collagens, PJRPAPER-Cuticle Collogens
Grp1a, PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1
Muscle Genes (1364), PJRPAPER-zL1 Muscle Genes,
PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev up,
PJRPAPER-zU29-Genes, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin, YK muscle-specific genes
B0228.4 B0228.4 P W All gene names: tag-308; B0228.4; 2I41; CE31282; CE37469; CE37470; CE37471; CE39660; WBGene00015061; WP:CE31282; WP:CE37469; WP:CE37470; WP:CE37471; WP:CE39660
Member of lists ( lists):
1214-L2-99-min, mount01, R=0.15,
GDPAPER-Prelim Mixed Muscle, Peter's All Muscle Genes
(1 16 01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's UP-Reg Muscle (10 25 00), PJ No10-1-R16 First
1500, PJRPAPER-Chromosome II Genes, PJRPAPER-L1 Muscle
Genes (95), Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG II [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, YK genes 95% different in muscle
and intestin
B0238.10 B0238.10 P W All gene names: B0238.10; 5F753; CE07700; WBGene00015074; WP:CE07700 WormBase description: acyltransfersase
Member of lists ( lists):
Proteome Cell Role (Oct 2000)- Genes
of Unknown Ce, Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, wmyst
B0238.11 B0238.11 P W All gene names: B0238.11; B0238.11.1; B0238.11.2; 5F747; CE07701; WBGene00015075; WP:CE07701
Member of lists ( lists):
mount18, R=0.38, stuart layer13,
Aging.p01, GD-Chol NSD/AMB, GD-L1 Muscle Genes, GD-Lev
Muscle Genes, GD-U29-Sp (wrt Lev 95), GD-U29 muscle
genes, Germ line-enriched, josh laura2 4/8 common, JW
1703 merged Peters zMuscle 8-02, Peter's Acetyl-P001
Superset, Peter's All Muscle Genes (1 16 01), Peter's
Dorsal List (02-19-01), Peter's L1-Dorsal+Excr avg
(99.9), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Muscle-Neuro Ubiq (99.9 Superset list), Peter's Neuro
(95; 06-18-01), Peter's Neuro (99; 06-18-01), Peter's
Superset of L1-L2 Genes (considering 99.9, PJ 836
muscle and intestine in common, PJ 1005I0.05M0.001, PJ
1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500, PJ No5 first
1500, PJ No8 First 1500, PJRPAPER-1329 L1 Muscle Genes
(Chromo V), PJRPAPER-1329 L1 Muscle List (genes without
1, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V
Genes, PJRPAPER-L1 Muscle Genes (unknowns from 1329,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1 Muscle Genes
(1364), PJRPAPER-zL1 Muscle Genes, PJRPAPER-zL1vL2 nsd,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
B0238.9 B0238.9 P W All gene names: B0238.9; 5F754; CE32558; WBGene00015073; WP:CE32558
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
josh laura1/2 common, PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4746 intestinal gene Con95, PJ
No10-1-R15 First 1500, PJ No10-1-R16 First 1500,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, Valerie Reinke's 11927 genes
B0240.2 B0240.2 P W All gene names: spe-42; B0240.2; 5M214; CE39310; WBGene00007117; WP:CE39310
Member of lists ( lists):
Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order
B0244.2 B0244.2 P W All gene names: ida-1; B0244.2; B0244.2.1; B0244.2.2; 3G855; CE31867; NM_065844; WBGene00002048; WP:CE31867; ia2 WormBase description: ida-1 encodes a protein tyrosine phosphatase-like receptor, orthologous to the mammalian type I diabetes autoantigens IA-2 and phogrin that are expressed in dense core vesicles of neuroendocrine tissue and involved in regulated protein secretion; in C. elegans, IDA-1 appears to be required for regulating presynaptic neurotransmission and in particular, for the neuropeptidergic control of egg-laying; ida-1 interacts genetically with unc-31 and unc-64, which encode proteins required for dense core vesicle fusion and exocytosis; ida-1 expression is detected in a subset of neurons in the anterior nerve ring, the ventral nerve cord, the tail, and the vulva, including the VC vulval motoneurons and the HSN egg-laying neurons; ida-1 is also detected in the vulval uv1 cells, non-neuronal cells that contain neurosecretory-like vesicles. WormBase CDS description: protein tyrosine phosphatase
Member of lists ( lists):
mount01, R=0.15, mount06, R=0.21, JW
Dauer Enriched AdjT0 vs AdjT12, JW SAGE p<0.001 (292),
male99, Male-enriched, Neuro-1 L1 Upreg (11 20 00), PJ
2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ No5 first 1500, PJ No 2
first 1500, PJRPAPER-Chromosome III Genes,
PJRPAPER-Chromosome V Genes, PJRPAPER-Male Genes,
Protein phosphatases, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome Cell Role (Oct 2000)-
Signal Transduction, Proteome LG III [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
B0244.9 B0244.9 P W All gene names: B0244.9; 3G820; CE01756; WBGene00015084; WP:CE01756
Member of lists ( lists):
mount07, R=0.43, Art-1-7, josh
laura1/2 common, PJ 1158IntestineMuscleTTEST0.001, PJ
1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R15 First 1500, PJ No10-1-R16 First
1500, PJRPAPER-Chromosome III Genes, PJRPAPER-Muslce
(L1) negative controls-2, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order, YK
genes 95% different in muscle and intestin
B0252.5 B0252.5 P W All gene names: B0252.5; 2H206; CE02421; WBGene00015089; WP:CE02421
Member of lists ( lists):
mount04, R=0.41, Art-1-7, GD-Chol
"\/", GD-U29 muscle genes, GD-U29-Sp (wrt L1 95), josh
laura1/2 common, JW SAGE mixed stage, male99, Peter's
Acetyl-P001 Superset, PJ 1158IntestineMuscleTTEST0.001,
PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome II
Genes, PJRPAPER-Male Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev down-up, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG II [May 2002], Reinke et al 2004, list of
genes in cluster order, SylviaAll 144, Valerie Reinke's
11927 genes
B0261.6 B0261.6 P W All gene names: B0261.6; 1F824; CE29532; CE39549; WBGene00015094; WP:CE29532; WP:CE39549
Member of lists ( lists):
771-Egg-99-min, mount04, R=0.41,
Art-1-7, Neuro-1 L1 Upreg (11 20 00), Peter's L2 Muscle
(95 Con; 02-01-01), PJ 1235 intestine-sepcific, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce
(L1) negative controls-2, PJRPAPER-Sperm Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Sperm-enriched,
Valerie Reinke's 11927 genes
B0272.3 B0272.3 P W All gene names: B0272.3; CE00852; WBGene00007129; WP:CE00852; XK51 WormBase description: 3-hydroxyacyl-CoA dehydrogenase
Member of lists ( lists):
1214-L2-99-min, mount24, R=0.37,
stuart layer7, Bea L2 mixed 709, Bea Ras L2 time course
(99%), Biosynthesis, Fatty acid oxidation genes, FP
1938 Intestine genes, JW AdjD T0 vs L1 T0 short 254, JW
Dauer ANOVA 2430 v4, JW Dauer Enriched by AdjDT0 vs
L1T0, JW Dauer Recovery Specific 1984, JW Late 325,
Lipid metabolism genes, PJ No4 first1500,
PJRPAPER-Chromosome X Genes, PJRPAPER-Lipid, fatty-acid
and sterol metabolism, PJRPAPER-Oxidoreductase,
Proteome Cell Role (Oct 2000)- Lipid, Sterol & Fat,
Proteome Funct Class (Mar 2000)-Oxidoreductases,
Proteome LG X [May 2002], rasl2, Reinke et al 2004,
list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
B0273.1 B0273.1 P W All gene names: B0273.1; 4G259; CE16787; WBGene00015097; WP:CE16787
Member of lists ( lists):
mount04, R=0.41, Aging p < .01,
GDPAPER-Prelim Mixed Muscle, male99, Male-enriched,
Peter's All Muscle Genes (1 16 01), Peter's Dorsal List
(02-19-01), Peter's L1-Dorsal+Excr avg (99.9), Peter's
UP-Reg Muscle (10 25 00), PJ 4746 intestinal gene
Con95, PJ No5 first 1500, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Male Genes, PJRPAPER-Muscle negative controls,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
B0273.2 B0273.2 P W All gene names: puf-7; B0273.2; B0273.2.1; B0273.2.2; 4G253; CE16788; NM_068419; WBGene00004243; WP:CE16788 WormBase description: puf-7 encodes a protein 97% identical to PUF-6 and functions redundantly with the other PUF genes, fbf-1, fbf-2, puf-6, and puf-8, during primordial germ cell development, based on combinatorial RNAi; interacts with NOS-2 in yeast two-hybrid screens.
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Art-1-7, Germ line-enriched, PJ No 2 first 1500,
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome Funct Class (Mar
2000)-RNA-Binding Subuni, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order, RNA
binding, rosetta, Valerie Reinke's 11927 genes
B0280.10 B0280.10 P W All gene names: B0280.10; 3I222; CE29533; WBGene00015105; WP:CE29533
Member of lists ( lists):
mount07, R=0.43, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG III
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
B0280.2 B0280.2 P W All gene names: B0280.2; 3I215; CE37473; WBGene00015100; WP:CE37473
Member of lists ( lists):
1214-L2-99-min, stuart layer12, FP
645 Intestine specific genes, FP 1938 Intestine genes,
PJ 4746 intestinal gene Con95, PJRPAPER-Chromosome III
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG III [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, YK genes 95%
different in muscle and intestin, YK intestinal genes
(p<.001), YK intestine-specific genes
B0280.9 B0280.9 P W All gene names: B0280.9; 3I212; CE00816; WBGene00015104; WP:CE00816
Member of lists ( lists):
stuart layer7, Germ line-enriched,
josh laura2 4/8 common, JW Dauer Enriched by AdjDT0 vs
L1T0, PJRPAPER-Chromosome III Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG III [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, wmyst
B0281.1 B0281.1 P W All gene names: B0281.1; 2C603; CE07712; WBGene00015108; WP:CE07712
Member of lists ( lists):
Proteome Cell Role (Oct 2000)- Genes
of Unknown Ce, Proteome LG II [May 2002], Reinke et al
2004, list of genes in cluster order
B0281.5 B0281.5 P W All gene names: B0281.5; 2C588; CE07716; WBGene00015112; WP:CE07716
Member of lists ( lists):
mount12, R=0.29, JW SAGE mixed stage,
PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome II Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Potassium channel subunits, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG II [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
B0285.5 B0285.5 P W All gene names: hse-5; B0285.5; 3F435; CE36681; NM_065475; WBGene00002003; WP:CE36681 WormBase description: hse-5 encodes a D-glucuronyl C5-epimerase.
Member of lists ( lists):
400 N2 hs min (egg), 1003 N2 hs min
(egg + L2), mount02, R=0.15, stuart layer13, daf-16
p<.001, 7-01, Eggs HS genes 99.9%, GD-Chol Down,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, GD-U29-Sp
(wrt L1 95), Peter's Acetyl-P001 Superset, Peter's
Neuro (95; 06-18-01), PJ No8 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome III
Genes, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
III [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, YK genes 95% different in
muscle and intestin
B0285.8 B0285.8 P W All gene names: ckb-1; B0285.8; 3F455; CE33590; NM_065478; WBGene00000511; WP:CE33590 WormBase description: choline kinase
Member of lists ( lists):
mount24, R=0.37, operon first genes,
PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG III [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes, YK genes 95% different in muscle and
intestin
B0285.9 B0285.9 P W All gene names: ckb-2; B0285.9; 3F459; CE33591; NM_065479; WBGene00000512; WP:CE33591 WormBase description: choline kinase
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), Bea ras L2 mixed 561, bea RasL2 486
genes, mount02, R=0.15, Bea L2 mixed 709, Bea Ras L2
time course (99%), JW Dauer ANOVA 2430 v4, JW Dauer
Recovery Specific 1984, JW Early 538, JW SAGE mixed
stage, L2 Hs genes 99.9, Lipid metabolism genes,
Peter's Acetyl-P001 Superset, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-Lipid,
fatty-acid and sterol metabolism,
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zU29WLev
down-up, PJRPAPER-zU29-Genes, Proteome Cell Role (Oct
2000)- Lipid, Sterol & Fat, Proteome Funct Class (Mar
2000)-Other Kinases, Proteome Funct Class (Mar
2000)-Transferase, Proteome LG III [May 2002], Proteome
Localization (Oct 2000)-Cytoplasmic, rasl2, Reinke et
al 2004, list of genes in cluster order, rosetta,
sir2.1ok434 283 min, sir2.1--ok434all 558 min, Valerie
Reinke's 11927 genes, wmyst, YK genes 95% different in
muscle and intestin
B0286.2 B0286.2 P W All gene names: lat-2; tag-12; B0286.2; 2E657; CE36968; CE39661; NM_062369; WBGene00002252; WP:CE36968; WP:CE39661 WormBase description: lat-2 encodes a predicted transmembrane protein that is homologous to vertebrate latrophilins, alpha-latrotoxin binding proteins that are members of the Class B/secretin family of G protein-coupled receptors; by homology, LAT-2 is predicted to function as a peptide hormone receptor that couples ligand binding to heterotrimeric G protein-mediated stimulation of secretion; lat-2 is expressed in the g1 gland cells and in the arcade cells in the head, and its expression has been reported to cycle with larval molts; as loss of lat-2 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of LAT-2 in C. elegans development and/or behavior is not yet known.
Member of lists ( lists):
mount13, R=0.10, Bea lectin, Peter's
Lev UP unc-29 DOWN (anova+10), PJRPAPER-Chromosome II
Genes, PJRPAPER-GPCRs (not redundant), Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG II
[May 2002], Proteome Localization (Oct
2000)-Unspecified membr, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0286.3 B0286.3 P W All gene names: B0286.3; 2E660; CE03863; WBGene00015116; WP:CE03863 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: saicar synthetase/air carboxlyase
Member of lists ( lists):
mount08, R=0.21, age1-216daf2-1384All
In age1daf2 modif 703 mi, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, daf-16 p<.001, 7-01, daf-16 (p
< .001), FP 645 Intestine specific genes, FP 1938
Intestine genes, josh laura1/2 common, JW Nucleotide
Metabolism, PJ 4746 intestinal gene Con95,
PJRPAPER-Chromosome II Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, sir2.1ok434 283 min, sir2.1--ok434all 558 min,
YK genes 95% different in muscle and intestin, YK
intestinal genes (p<.001), YK intestine-specific genes
B0303.9 B0303.9 P W All gene names: SLP-1; B0303.9; 3J791; CE00539; WBGene00015130; WP:CE00539 WormBase description: SLP-1
Member of lists ( lists):
771-Egg-99-min, mount07, R=0.43,
PJRPAPER-Chromosome III Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0304.2 B0304.2 P W All gene names: B0304.2; 2E815; CE02424; WBGene00015134; WP:CE02424
Member of lists ( lists):
mount07, R=0.43, Art-1-7, Germ
line-enriched, josh laura1/2 common, Peter's L1 Muscle
Genes (95 Con; 02-01-01), PJRPAPER-Chromosome II Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG II
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
B0304.3 B0304.3 P W All gene names: cyp-23A1; B0304.3; 2E805; CE27050; NM_062396; WBGene00015135; WP:CE27050 WormBase description: The B0304.3 gene encodes a homolog of the human gene CYP7B1, which when mutated leads to giant cell hepatitis (OMIM:231100). WormBase CDS description: Cytochrome P450
Member of lists ( lists):
mount01, R=0.15, Cytochrome P450
genes, JW Common Kinetics 446 v3, JW Dauer ANOVA 2430
v4, JW P450s Full, Lipid metabolism genes,
PJRPAPER-Chromosome II Genes, PJRPAPER-Lipid,
fatty-acid and sterol metabolism,
PJRPAPER-Oxidoreductase, PJRPAPER-P450, Proteome Cell
Role (Oct 2000)- Lipid, Sterol & Fat, Proteome Funct
Class (Mar 2000)-Oxidoreductases, Proteome LG II [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
B0310.5 B0310.5 P W All gene names: ugt-46; B0310.5; CE03878; WBGene00015141; WP:CE03878; XB146 WormBase description: 7TM chemoreceptor, ugt family
Member of lists ( lists):
1214-L2-99-min, mount27, R=0.48, Bea
UDP-glucuronosyltransferase, JW Common Kinetics 446 v3,
JW Dauer ANOVA 2430 v4, JW UDP-glucoronosyltransferase,
Lipid metabolism genes, PJ No 2 first 1500,
PJRPAPER-Chromosome X Genes, PJRPAPER-Lipid, fatty-acid
and sterol metabolism, Proteome Cell Role (Oct 2000)-
Lipid, Sterol & Fat, Proteome Funct Class (Mar
2000)-Transferase, Proteome LG X [May 2002], Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
B0310.6 B0310.6 P W All gene names: B0310.6; CE03879; WBGene00015142; WP:CE03879; XB150
Member of lists ( lists):
703 InParaquatMin 109, mount29,
R=0.53, age1-216daf2-1384All In age1daf2 modif 703 mi,
daf-2 1384 InAgingSetMin3ClusterB, daf-2 1384 min,
GD-Chol NSD/AMB, GD-U29 muscle genes, GD-U29-Sp (wrt L1
95), GDPAPER-Prelim Mixed Muscle, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW Late 325,
Peter's Acetyl-P001 Superset, Peter's All Muscle Genes
(1 16 01), Peter's Dorsal List (02-19-01), Peter's
L1-Dorsal+Excr avg (99.9), PJ 4746 intestinal gene
Con95, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome X
Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG X [May 2002], Reinke
et al 2004, list of genes in cluster order
B0334.1 B0334.1 P W All gene names: B0334.1; B0334.1.1; B0334.1.2; 2L776; CE02932; WBGene00007142; WP:CE02932 WormBase description: Transthyretin-like family
Member of lists ( lists):
mount08, R=0.21, FP 1311 similar in
intestine and muscle, FP 1938 Intestine genes, GD-Chol
Down, GD-GABA Down (Anova/TTest), GD-L1 Muscle Genes,
GD-L1-Sp (99.0 M-W) Muscle Genes, GD-L1-Sp (95 TTest),
GD-Musc muscle, GD-U25 muscle, GD-U29-Sp (wrt Lev 95),
GD-U29 muscle genes, GD-WT-Sp (wrt Lev 95), JW 1703
merged Peters zMuscle 8-02, JW AdjD T0 vs AdjD T12
short 406, JW Dauer ANOVA 2430 v4, JW Dauer Enriched
AdjT0 vs AdjT12, JW Dauer Recovery Specific 1984, JW
Down 540, JW Down Early 378, Peter's Acetyl-P001
Superset, Peter's All Muscle Genes (1 16 01), Peter's
L1 Muscle Genes (95 Con; 02-01-01), Peter's L2 Muscle
(95 Con; 02-01-01), Peter's Muscle-Neuro Ubiq (99.9
Superset list), Peter's Neuro (95; 06-18-01), Peter's
Neuro (99; 06-18-01), Peter's Neuro (99.9; 06-18-01),
Peter's Superset of L1-L2 Genes (considering 99.9, PJ
836 muscle and intestine in common, PJ 1005I0.05M0.001,
PJ 1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No5 first 1500, PJ No8 First
1500, PJRPAPER-1329 L1 Muscle Genes (Chromo II),
PJRPAPER-1329 L1 Muscle List (genes without 1,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome II Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1 Muscle Genes
(1364), PJRPAPER-xWT-specific (wrtLEV), PJRPAPER-zL1
Muscle Genes, PJRPAPER-zL1-Specific Genes,
PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Small Molecule Tran, Proteome
Funct Class (Mar 2000)-Channel (Passive T, Proteome LG
II [May 2002], Proteome Localization (Oct
2000)-Unspecified membr, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK intestinal genes (p<.001), YK Similar muscle
and intestine genes
B0334.10 B0334.10 P W All gene names: B0334.10; 2L811; CE19660; WBGene00007148; WP:CE19660
Member of lists ( lists):
mount04, R=0.41, male99,
Male-enriched, PJ No8 First 1500, PJRPAPER-Chromosome
II Genes, PJRPAPER-Male Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, YK genes
95% different in muscle and intestin
B0334.11 B0334.11 P W All gene names: mel-19; ooc-3; B0334.11; 2L784; CE19661; CE32788; NM_064055; NM_182110; WBGene00003868; WP:CE19661; WP:CE32788 WormBase description: ooc-3 encodes a nematode-specific protein with a predicted signal sequence, four predicted transmembrane domains, and two putative PEST sequences; OOC-3 is probably localized to the endoplasmic reticulum (ER), and is maternally required for correct localization of PAR-2 and PAR-3 in the P1 blastomere of the two-cell stage embryo; specifically, OOC-3 is required for restricting PAR-3 to the anterior cortex of the P1 blastomere to assure PAR-2 localization at the posterior cortex; more generally, OOC-3 is required to establish asymmetrical anterior-posterior cortical domains and spindle orientation in P1.
Member of lists ( lists):
mount11, R=0.38, stuart layer13,
Aging.p01, josh laura2 4/8 common, JW Dauer Enriched
AdjT0 vs AdjT12, operon first genes, PJ 1235
intestine-sepcific, PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4212 IntestineMuscleTtest0.05, PJ
4746 intestinal gene Con95, PJ No8 First 1500,
PJRPAPER-Chromosome II Genes, Proteome LG II [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
B0334.4 B0334.4 P W All gene names: B0334.4; 2L787; CE02936; WBGene00007144; WP:CE02936 WormBase description: Yeast hypothetical protein L8167.12 like
Member of lists ( lists):
mount07, R=0.43, FP 1311 similar in
intestine and muscle, FP 1938 Intestine genes, GD-Chol
NSD/AMB, GD-GABA Down (Anova/TTest), GD-L2 Muscle
Genes, GD-Lev Muscle Genes, GD-U25 muscle, GD-U29
muscle genes, GD-U29-Sp (wrt L1 95), Germ
line-enriched, JW 1703 merged Peters zMuscle 8-02,
operon first genes, Peter's Acetyl-P001 Superset,
Peter's All Muscle Genes (1 16 01), Peter's L1 Muscle
Genes (95 Con; 02-01-01), Peter's L2 Muscle (95 Con;
02-01-01), Peter's Muscle-Neuro Ubiq (99.9 Superset
list), Peter's Neuro (95; 06-18-01), Peter's Neuro (99;
06-18-01), Peter's Neuro (99.9; 06-18-01), Peter's
Superset of L1-L2 Genes (considering 99.9, PJ 1445
M0.05I0.001, PJ 1617 Muscle and intestine in common,
PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome II Genes, PJRPAPER-L1 Muscle Genes
(95), PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zL1vL2
nsd, PJRPAPER-zL2 Muscle Genes, PJRPAPER-zLev-Genes,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes,
PJRPAPERz-L2 Clustered (inc Operons not Paral,
PJRPAPERz-L2 Clustered(without Paralogues wit, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
II [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK intestinal genes (p<.001)
B0334.8 B0334.8 P W All gene names: age-1; daf-23; B0334.8; 2L810; CE23506; NM_064061; WBGene00000090; WP:CE23506 WormBase description: age-1 encodes the C. elegans ortholog of the phosphoinositide 3-kinase (PI3K) p110 catalytic subunit; AGE-1, supplied maternally and embryonically, is a central component of the C. elegans insulin-like signaling pathway, lying downstream of the DAF-2/insulin receptor and upstream of both the PDK-1 and AKT-1/AKT-2 kinases and the DAF-16 forkhead type transcription factor, whose negative regulation is the key output of the insulin signaling pathway; in accordance with its role in insulin signaling, AGE-1 activity is required for regulation of metabolism, life span, dauer formation, stress resistance, fertility, and embryonic development; although the age-1 expression pattern has not yet been reported, ectopic expression studies indicate that pan-neuronal age-1 expression is sufficient to rescue life-span defects, while neuronal, intestinal, or muscle expression can partially rescue dauer formation, and neuronal or muscle expression can rescue metabolic defects. WormBase CDS description: phosphatidylinositol 3-kinase
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), mount02, R=0.15, stuart layer13, Art-1-7,
Dauer, embry devel, GD-Chol Down, GD-GABA NSD/AMB
(Anova/TTest), GD-Musc muscle, GD-U29-Sp (wrt Lev 95),
GD-U29 muscle genes, general, general cell funcs,
Insulin Signaling, L2 Hs genes 99.9, Peter's
Acetyl-P001 Superset, PJ 4746 intestinal gene Con95, PJ
No10-1-R15 First 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome II Genes,
PJRPAPER-Tyrosine Kinase, PJRPAPER-zU29WLev down,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Signal Transduction, Proteome Funct Class (Mar
2000)-Other Kinases, Proteome LG II [May 2002],
Proteome Localization (Oct 2000)-Cytoplasmic, Reinke et
al 2004, list of genes in cluster order, SylviaAll 144
B0336.11 B0336.11 P W All gene names: B0336.11; 3G798; CE32296; CE39202; WBGene00015148; WP:CE32296; WP:CE39202
Member of lists ( lists):
mount06, R=0.21, age1-216daf2-1384All
In age1daf2 modif 703 mi, Aging p < .01, daf-2 1384
min, daf-2 1384 InAgingSetMin3ClusterB, FP 464 Muscle
specific genes, GD-Chol NSD/AMB, GD-GABA NSD/AMB
(Anova/TTest), GD-L1 Muscle Genes, GD-L2 Muscle Genes,
GD-Lev Muscle Genes, GD-U25 muscle, GD-U29 muscle
genes, GDPAPER-Prelim Mixed Muscle, JW 1703 merged
Peters zMuscle 8-02, JW Dauer ANOVA 2430 v4, JW Dauer
Recovery Specific 1984, JW Early 538, Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, Peter's
UP-Reg Muscle (10 25 00), PJRPAPER-1329 L1 Muscle Genes
(Chromo III), PJRPAPER-1329 L1 Muscle List (genes
within 10, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-CLustered
muscle genes (12 16 01), PJRPAPER-L1 Muscle Genes (95),
PJRPAPER-L1 Muscle Genes (1364), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, PJRPAPERz-L1 Cluster (10 kb; no
para or ops), PJRPAPERz-L1 Clustered(without Paralogues
wit, PJRPAPERz-L2 Clustered (inc Operons not Paral,
PJRPAPERz-L2 Clustered(without Paralogues wit, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
III [May 2002], Proteome Localization (Oct 2000)-Other
vesicles of, Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin, YK
muscle-specific genes
B0336.3 B0336.3 P W All gene names: B0336.3; 3G803; CE29542; WBGene00015143; WP:CE29542
Member of lists ( lists):
mount05, R=0.22, operon first genes,
PJRPAPER-Chromosome III Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0336.5 B0336.5 P W All gene names: B0336.5; 3G781; CE26356; CE29544; WBGene00015145; WP:CE26356; WP:CE29544
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Aging p < .01, Aging.p01, Art-1-7, daf-16 p<.001, 7-01,
daf-16 (p < .001), Germ line-enriched, operon first
genes, Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Neuro (95; 06-18-01), Peter's Neuro (99; 06-18-01),
Peter's Neuro (99.9; 06-18-01), PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes,
PJRPAPER-Transcription factors (good list), Proteome
Cell Role (Oct 2000)- Pol II Transcriptio, Proteome
Funct Class (Mar 2000)-Transcription Fact, Proteome LG
III [May 2002], Proteome Localization (Oct
2000)-Nuclear, Reinke et al 2004, list of genes in
cluster order, RNA pol II transcription, rosetta,
Valerie Reinke's 11927 genes, wmyst
B0336.6 B0336.6 P W All gene names: B0336.6; B0336.6.1; B0336.6.2; 3G780; CE29545; WBGene00015146; WP:CE29545 WormBase description: B0336.6 encodes an Abl interactor ortholog, with an SH3 domain, required for embryonic development; mammalian Abl interactors are associated with synaptosomes, growth cone particles, and macropinocytic vesicles, and may regulate Rac-dependent cytoskeletal reorganization and Abl kinase activity; B0336.6's orthologs include human SSH3BP1 (ABI1; OMIM:603050, mutated in acute myeloid leukemia), ABI-2 (OMIM:606442), and NESH (OMIM:606363); B0336.6 binds UNC-53 in two-hybrid screens.
Member of lists ( lists):
mount11, R=0.38, stuart layer7,
stuart layer11, Art-1-7, Germ line-enriched, josh
laura2 4/8 common, Peter's L1 Muscle Genes (95 Con;
02-01-01), PJ 1235 intestine-sepcific, PJ 1445
M0.05I0.001, PJ 1617 Muscle and intestine in common,
PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No5 first 1500, PJ No10-1-R15 First 1500, PJ
No10-1-R16 First 1500, PJRPAPER-Chromosome III Genes,
PJRPAPER-L1 Muscle Genes (95), Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0336.7 B0336.7 P W All gene names: B0336.7; B0336.7b.1; B0336.7b.2; 3G784; CE29546; CE37741; WBGene00015147; WP:CE29546; WP:CE37741
Member of lists ( lists):
mount02, R=0.15, stuart layer13,
Aging.p01, daf-16 p<.001, 7-01, daf-16 (p < .001), FP
645 Intestine specific genes, FP 1311 similar in
intestine and muscle, FP 1938 Intestine genes, josh
laura2 4/8 common, Peter's L1 Muscle Genes (95 Con;
02-01-01), Peter's Neuro (95; 06-18-01), Peter's Neuro
(99; 06-18-01), PJ 1445 M0.05I0.001, PJ 1617 Muscle
and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJ No10-1-R15 First 1500, PJ No10-1-R16 First
1500, PJ No 2 first 1500, PJRPAPER-Chromosome III
Genes, PJRPAPER-L1 Muscle Genes (95), Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG III
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, YK genes 95% different in muscle and
intestin
B0344.2 B0344.2 P W All gene names: wrt-9; B0344.2; CE33963; NM_075897; WBGene00006955; WP:CE33963; XC209
Member of lists ( lists):
mount10, R=0.19, mount14, R=0.38, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
JW Late 325, PJ No8 First 1500, PJRPAPER-Chromosome X
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG X [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0348.5 B0348.5 P W All gene names: B0348.5; Y108G3B.A; 5A485; CE17330; WBGene00015153; WP:CE17330
Member of lists ( lists):
mount01, R=0.15, mount07, R=0.43,
Art-1-7, FP 1938 Intestine genes, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW Late 325,
paraquat2way 79 min, PJ 4746 intestinal gene Con95, PJ
No8 First 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Chromosome V Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin, YK intestinal genes (p<.001)
B0361.2 B0361.2 P W All gene names: B0361.2; 3I397; CE33549; CE38480; WBGene00015156; WP:CE33549; WP:CE38480
Member of lists ( lists):
1214-L2-99-min, mount00, R=0.11,
mount07, R=0.43, stuart layer13, GD-GABA NSD/AMB
(Anova/TTest), GD-Musc muscle, Hermaphrodite-enriched,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4746 intestinal gene Con95, PJ No8 First 1500, PJ
No10-1-R15 First 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Chromosome III Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
B0361.6 B0361.6 P W All gene names: B0361.6; 3I366; CE00835; WBGene00015160; WP:CE00835
Member of lists ( lists):
771-Egg-99-min, mount05, R=0.22,
GD-L2 Muscle Genes, JW 1703 merged Peters zMuscle 8-02,
JW Common Kinetics 446 v3, JW Dauer ANOVA 2430 v4,
Peter's All Muscle Genes (1 16 01), Peter's L1 Muscle
Genes (95 Con; 02-01-01), Peter's L2 Muscle (95 Con;
02-01-01), Peter's Superset of L1-L2 Genes (considering
99.9, PJ 1445 M0.05I0.001, PJ 1617 Muscle and
intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, PJRPAPER-L1
Muscle Genes (95), PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2
Muscle Genes, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG III [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
B0361.7 B0361.7 P W All gene names: B0361.7; 3I374; CE32100; WBGene00015161; WP:CE32100 WormBase description: Acid phosphatase
Member of lists ( lists):
mount02, R=0.15, GD-Chol "\/",
GD-GABA "\/" (Anova/TTest), GD-Lev Muscle Genes,
GD-Lev-Sp (wrt wt 95), GD-Musc muscle, Peter's Neuro
(95; 06-18-01), PJ 1158IntestineMuscleTTEST0.001, PJ
2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, PJRPAPER-Other
Phosphotases, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome Funct Class (Mar 2000)-Hydrolase,
Proteome Funct Class (Mar 2000)-Other Phosphotases,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
B0361.8 B0361.8 P W All gene names: B0361.8; 3I376; CE26792; WBGene00015162; WP:CE26792
Member of lists ( lists):
mount07, R=0.43, FP 1311 similar in
intestine and muscle, FP 1938 Intestine genes, GD-Chol
NSD/AMB, GD-GABA NSD/AMB (Anova/TTest), GD-L2 Muscle
Genes, GD-U25 muscle, GD-U29 muscle genes, JW 1703
merged Peters zMuscle 8-02, Peter's Acetyl-P001
Superset, Peter's All Muscle Genes (1 16 01), Peter's
Dorsal List (02-19-01), Peter's L1-Dorsal+Excr avg
(99.9), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's Neuro
(95; 06-18-01), Peter's Superset of L1-L2 Genes
(considering 99.9, PJ 1445 M0.05I0.001, PJ 1617 Muscle
and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJ No8 First 1500, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-zL1vL2 nsd,
PJRPAPER-zL2 Muscle Genes, PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Protein Modificatio, Proteome LG III [May 2002],
Proteome Localization (Oct 2000)-Unspecified membr,
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK intestinal
genes (p<.001)
B0365.1 B0365.1 P W All gene names: B0365.1; 5N599; CE07719; WBGene00007150; WP:CE07719 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: ATP citrate lyase
Member of lists ( lists):
mount07, R=0.43, stuart layer9,
daf-16 p<.001, 7-01, GDPAPER-Prelim Mixed Muscle, josh
laura1/2 common, JW Common Kinetics 446 v3, JW Dauer
ANOVA 2430 v4, Peter's All Muscle Genes (1 16 01),
Peter's UP-Reg Muscle (10 25 00), PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRGDPAPER-Yeast Mito (All)-Worm Homologues,
PJRGDPAPER-Yeast Mito (Prokaryotic)-Worm Homo,
PJRPAPER-Chromosome V Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome Funct Class (Mar
2000)-Lyase, Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, YK genes 95% different in muscle
and intestin
B0379.1 B0379.1 P W All gene names: B0379.1; 1K653; CE20452; WBGene00007155; WP:CE20452
Member of lists ( lists):
mount06, R=0.21, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG I [May
2002], Reinke et al 2004, list of genes in cluster
order
B0379.2 B0379.2 P W All gene names: B0379.2; 1K644; CE07725; WBGene00007156; WP:CE07725
Member of lists ( lists):
mount04, R=0.41, josh laura1/2
common, PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R16 First 1500, PJRPAPER-Chromosome I
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order
B0379.7 B0379.7 P W All gene names: B0379.7; B0379.7.1; B0379.7.2; 1K650; CE23508; WBGene00007159; WP:CE23508
Member of lists ( lists):
mount04, R=0.41, josh laura1/2
common, male99, Male-enriched, PJ 3085 intestinal
genes, PJ 3118 intestinal genes, PJ 4746 intestinal
gene Con95, PJ No10-1-R16 First 1500,
PJRPAPER-Chromosome I Genes, PJRPAPER-Male Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
I [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes, YK genes 95% different in muscle
and intestin
B0393.2 B0393.2 P W All gene names: rbg-3; B0393.2; B0393.2.1; B0393.2.2; 3F845; CE00855; WBGene00007167; WP:CE00855 WormBase description: Probable rabGAP domains
Member of lists ( lists):
mount07, R=0.43, FP 1938 Intestine
genes, GD-Chol "\/", GD-Lev Muscle Genes, GD-Lev-Sp
(wrt wt 95), GD-U29 muscle genes, GD-U29-Sp (wrt L1
95), GDPAPER-Prelim Mixed Muscle, Oocyte-enriched,
Peter's Acetyl-P001 Superset, Peter's All Muscle Genes
(1 16 01), Peter's UP-Reg Muscle (10 25 00), PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-Oocyte Genes,
PJRPAPER-xLEV-specific (wrtWT), PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev
down-up, PJRPAPER-zU29-Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK intestinal
genes (p<.001), YK Similar muscle and intestine genes
B0393.3 B0393.3 P W All gene names: B0393.3; 3F849; CE00856; WBGene00007168; WP:CE00856 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
Member of lists ( lists):
mount11, R=0.38, stuart layer13,
Oocyte-enriched, PJ 1158IntestineMuscleTTEST0.001, PJ
1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No 2 first 1500, PJRPAPER-Chromosome III
Genes, PJRPAPER-Oocyte Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
B0393.4 B0393.4 P W All gene names: B0393.4; 3F850; CE00857; WBGene00007169; WP:CE00857
Member of lists ( lists):
Bea ras L2 mixed 561, bea RasL2 486
genes, mount04, R=0.41, Bea L2 mixed 709, Bea Ras L2
time course (99%), Peter's Lev UP unc-29 DOWN
(anova+10), PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, PJRPAPER-Muscle
negative controls, PJRPAPER-Muslce (L1) negative
controls-2, PJRPAPER-Sperm Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG III [May
2002], rasl2, Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes
B0393.5 B0393.5 P W All gene names: B0393.5; 3F865; CE00858; WBGene00007170; WP:CE00858 WormBase description: EGF-like aspartic acid and asparagine hydroxylation sites
Member of lists ( lists):
mount14, R=0.38, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
B0393.6 B0393.6 P W All gene names: B0393.6; 3F870; CE33964; WBGene00007171; WP:CE33964 WormBase description: Zinc finger, C3HC4 type (RING finger)
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
NL1832syntlet, PJ 2378 IntestineMusclettest0.01, PJ
4212 IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
B0395.2 B0395.2 P W All gene names: B0395.2; CE02943; WBGene00007174; WP:CE02943; XQ647 WormBase description: Sterol O-acyltransferase
Member of lists ( lists):
mount14, R=0.38, Bea L2 mixed 709, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
JW Late 325, Lipid metabolism genes, Peter's Dorsal
List (02-19-01), Peter's L1 Muscle Genes (95 Con;
02-01-01), Peter's L1-Dorsal+Excr avg (99.9), PJ No8
First 1500, PJRPAPER-Chromosome X Genes,
PJRPAPER-Lipid, fatty-acid and sterol metabolism,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Lipid, Sterol & Fat, Proteome Funct
Class (Mar 2000)-Transferase, Proteome LG X [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
B0403.4 B0403.4 P W All gene names: tag-320; B0403.4; CE03880; WBGene00015168; WP:CE03880; XH686 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: protein disulfide-isomerase
Member of lists ( lists):
mount05, R=0.22, JW Common Kinetics
446 v3, JW Dauer ANOVA 2430 v4, PJ 3085 intestinal
genes, PJ 3118 intestinal genes, PJ 4746 intestinal
gene Con95, PJ No 2 first 1500, PJRPAPER-Cell Stress
(not HSP/Chap/MDR), PJRPAPER-Chromosome X Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG X [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0412.2 B0412.2 P W All gene names: daf-7; B0412.2; 3B431; CE01758; NM_064864; WBGene00000903; WP:CE01758 WormBase description: daf-7 encodes a member of the transforming growth factor beta superfamily that affects dauer larvae formation in a TGF-beta-mediated pathway and also affects egg laying; expressed in the ASI neurons. WormBase CDS description: transforming growth factor beta proteins
Member of lists ( lists):
mount01, R=0.15, Chemosensation,
Dauer, PJRPAPER-Chromosome III Genes,
PJRPAPER-Extracellular (not cell wall or collagen),
PJRPAPER-RTKs, PJRPAPER-Tyrosine Kinase, Proteome Cell
Role (Oct 2000)- Signal Transduction, Proteome Funct
Class (Mar 2000)-Ligand, Proteome LG III [May 2002],
Proteome Localization (Oct 2000)-Extracellular (ex,
Reinke et al 2004, list of genes in cluster order,
rosetta, tgf-beta signaling, Valerie Reinke's 11927
genes
B0414.3 B0414.3 P W All gene names: hil-5; B0414.3; 1G351; CE07733; NM_059277; WBGene00001856; WP:CE07733 WormBase description: histone H1
Member of lists ( lists):
mount11, R=0.38, stuart layer13,
Germ line-enriched, Histone genes, PJ 3085 intestinal
genes, PJ 3118 intestinal genes, PJ 4746 intestinal
gene Con95, PJ No4 first1500, PJ No5 first 1500, PJ
No10-1-R15 First 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Chromatin/Chromosome Structure,
PJRPAPER-Chromosome I Genes, Proteome Cell Role (Oct
2000)- Chromatin/Chromosom, Proteome Funct Class (Mar
2000)-DNA-binding Domain, Proteome LG I [May 2002],
Proteome Localization (Oct 2000)-Nuclear, Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
B0414.4 B0414.4 P W All gene names: B0414.4; WBGene00043087
Member of lists ( lists):
Proteome LG I [May 2002], Reinke et al
2004, list of genes in cluster order
B0414.5 B0414.5 P W All gene names: cpb-3; B0414.5; 1G366; CE07735; NM_059279; WBGene00000772; WP:CE07735 WormBase description: The cbp-3 gene encodes a cytoplasmic polyadenylation element binding (CPEB) protein homolog. WormBase CDS description: RNA binding protein
Member of lists ( lists):
mount07, R=0.43, Germ line-enriched,
JW Dauer Enriched by AdjDT0 vs L1T0, PJ No5 first 1500,
PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, RNA
binding, rosetta, Valerie Reinke's 11927 genes
B0414.6 B0414.6 P W All gene names: glh-3; B0414.6; 1G370; CE07736; NM_059280; WBGene00001600; WP:CE07736 WormBase description: glh-3 encodes a predicted DEAD-like RNA helicase; GLH-3 interacts with itself and with CSN-5, KGB-1, ZYX-1, and GLH-1 in vitro, and is expressed in association with P granules throughout development. WormBase CDS description: RNA helicase
Member of lists ( lists):
mount07, R=0.43, PJRPAPER-Chromosome
I Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Protein Production (not ribo/chap),
PJRPAPER-RNA Processing, Protein expression, Proteome
Cell Role (Oct 2000)- RNA Processing/Modi, Proteome
Cell Role (Oct 2000)- Protein Synthesis, Proteome Funct
Class (Mar 2000)-Helicase, Proteome LG I [May 2002],
Proteome Localization (Oct 2000)-Cytoplasmic, Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, wmyst, YK genes 95%
different in muscle and intestin
B0414.8 B0414.8 P W All gene names: B0414.8; 1G380; CE30413; CE36910; WBGene00015176; WP:CE30413; WP:CE36910
Member of lists ( lists):
1214-L2-99-min, mount11, R=0.38,
stuart layer13, Art-1-7, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome I Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0416.1 B0416.1 P W All gene names: B0416.1; CE19663; WBGene00015177; WP:CE19663; XJ927
Member of lists ( lists):
mount01, R=0.15, GD-Chol UP, GD-Lev
Muscle Genes, GD-Lev-Sp (wrt U29 95), GD-Lev-Sp (wrt wt
95), Peter's Acetyl-P001 Superset, Peter's Lev UP
unc-29 DOWN (anova+10), PJ No 2 first 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome X Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-xLEV-specific (wrtWT), PJRPAPER-zLev-Genes,
PJRPAPER-zU29WLev up, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG X [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
B0416.4 B0416.4 P W All gene names: B0416.4; CE02434; WBGene00015180; WP:CE02434; XJ899
Member of lists ( lists):
mount07, R=0.43, Art-1-7,
Oocyte-enriched, PJRPAPER-Chromosome X Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Oocyte Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG X [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
B0416.7 B0416.7 P W All gene names: B0416.7; CE02437; CE39552; WBGene00015182; WP:CE02437; WP:CE39552; XJ914
Member of lists ( lists):
mount15, R=0.37, PJ No 2 first 1500,
PJRPAPER-Chromosome X Genes, PJRPAPER-L1 Muscle Genes
(95), Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG X [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes
B0432.10 B0432.10 P W All gene names: B0432.10; 2A574; CE07748; WBGene00015191; WP:CE07748
Member of lists ( lists):
mount07, R=0.43, daf-16 p<.001, 7-01,
daf-16 (p < .001), operon first genes,
PJRPAPER-Chromosome II Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0432.8 B0432.8 P W All gene names: B0432.8; 2A562; CE34637; WBGene00015189; WP:CE34637 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
Member of lists ( lists):
mount07, R=0.43, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG II [May
2002], Reinke et al 2004, list of genes in cluster
order
B0454.6 B0454.6 P W All gene names: B0454.6; 2D325; CE07756; WBGene00015197; WP:CE07756 WormBase description: amino acid permease
Member of lists ( lists):
mount06, R=0.21, Proteome Cell Role
(Oct 2000)- Small Molecule Tran, Proteome Funct Class
(Mar 2000)-Active Transporter, Proteome Funct Class
(Mar 2000)-Transporter, Proteome LG II [May 2002],
Proteome Localization (Oct 2000)-Unspecified membr,
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0457.1 B0457.1 P W All gene names: lat-1; B0457.1; 2J197; CE02945; CE32789; CE36086; NM_063493; NM_182149; WBGene00002251; WP:CE02945; WP:CE32789; WP:CE36086 WormBase description: lat-1 encodes a predicted latrophilin that affects embryonic elongation, pharyngeal development, and reproductive organ formation; apically localized in developing epithelia and localized to presynaptic surfaces in neurons.
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), mount07, R=0.43, Bea lectin, L2 Hs genes
99.9, PJRPAPER-Chromosome II Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG II [May
2002], Proteome Localization (Oct 2000)-Unspecified
membr, Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
B0457.3 B0457.3 P W All gene names: B0457.3; 2J198; WBGene00014660
Member of lists ( lists):
1214-L2-99-min, mount04, R=0.41, PJ
4212 IntestineMuscleTtest0.05, PJ No 2 first 1500,
PJRPAPER-Chromosome II Genes, PJRPAPER-Muscle negative
controls, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
B0462.3 B0462.3 P W All gene names: fbxb-119; B0462.3; 5S797; CE15556; WBGene00007182; WP:CE15556
Member of lists ( lists):
mount12, R=0.29, daf-16 min,
PJRPAPER-Chromosome V Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
B0464.2 B0464.2 P W All gene names: B0464.2; 3K585; CE20456; WBGene00007184; WP:CE20456 WormBase description: TPR Domain
Member of lists ( lists):
mount05, R=0.22, stuart layer11,
GD-Chol NSD/AMB, GD-GABA Down (Anova/TTest), GD-Lev
Muscle Genes, GD-U25 muscle, Germ line-enriched, josh
laura2 4/8 common, Peter's Acetyl-P001 Superset,
Peter's Neuro (95; 06-18-01), Peter's Neuro (99;
06-18-01), Peter's Neuro (99.9; 06-18-01), PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No5 first 1500, PJ
No10-1-R16 First 1500, PJ No10-1-R15 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome III
Genes, PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev nsd,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0464.6 B0464.6 P W All gene names: B0464.6; B0464.6.1; B0464.6.2; B0464.6.3; 3K554; CE33965; WBGene00007186; WP:CE33965
Member of lists ( lists):
771-Egg-99-min, mount11, R=0.38,
stuart layer9, josh laura2 4/8 common, Oocyte-enriched,
PJ 4212 IntestineMuscleTtest0.05, PJ No 2 first 1500,
PJRPAPER-Chromosome III Genes, PJRPAPER-Oocyte Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0464.8 B0464.8 P W All gene names: tag-342; B0464.8; 3K559; CE36465; WBGene00007187; WP:CE36465
Member of lists ( lists):
mount02, R=0.15, daf-16 p<.001, 7-01,
GD-Chol Down, GD-U29-Sp (wrt Lev 95), GD-U29 muscle
genes, Peter's Acetyl-P001 Superset, Peter's Neuro (95;
06-18-01), Peter's Neuro (99; 06-18-01), Peter's Neuro
(99.9; 06-18-01), PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4746 intestinal gene Con95, PJ
No10-1-R15 First 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome III
Genes, PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes,
Reinke et al 2004, list of genes in cluster order
B0464.9 B0464.9 P W All gene names: B0464.9; 3K555; CE26705; WBGene00007188; WP:CE26705
Member of lists ( lists):
mount11, R=0.38, stuart layer9, josh
laura2 4/8 common, PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4746 intestinal gene Con95, PJ No
2 first 1500, PJRPAPER-Chromosome III Genes, Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
B0491.1 B0491.1 P W All gene names: B0491.1; 2L639; CE02103; WBGene00007189; WP:CE02103
Member of lists ( lists):
mount07, R=0.43, daf-16 p<.001, 7-01,
daf-16 (p < .001), operon first genes, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome II Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG II [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, wmyst, YK genes 95% different in muscle and
intestin
B0491.2 B0491.2 P W All gene names: rol-5; sqt-1; B0491.2; B0491.2.1; B0491.2.2; 2L626; CE02104; NM_064020; Rol; WBGene00005016; WP:CE02104 WormBase description: sqt-1 encodes a cuticle collagen; during larval and adult development, sqt-1 activity is required, likely redundantly, for normal cuticle, and hence organismal, morphology; sqt-1 mRNA abundance oscillates during larval development, peaking at one point during each larval stage and peaking again in adults; sqt-1 transcripts are also detected in animals at the L1-L2d molt; in the temporally distinct waves of collagen gene expression that occur during larval development, sqt-1 mRNA appears to be synthesized during the second, or intermediate, stage, just very slightly earlier than sqt-3/col-1 and dpy-13; SQT-1 protein is detected in cuticle extracts from L2, L3, and L4 larvae, and from adults, but is not detected in extracts from L1 or dauer larvae; sqt-1 interacts genetically with a number of genes also required for normal cuticle and organismal morphology, e.g., rol-6 and lon-3, which also encode cuticular collagens. WormBase CDS description: cuticle collagen SQT-1
Member of lists ( lists):
mount16, R=0.40, Cell Adhesion genes,
Collagen, GD-Chol UP, GD-GABA NSD/AMB (Anova/TTest),
GD-L1 Muscle Genes, GD-L1-Sp (wrt U29 95), GD-L2 Muscle
Genes, GDPAPER-Prelim Mixed Muscle, JW 1703 merged
Peters zMuscle 8-02, JW Dauer ANOVA 2430 v4, JW Dauer
Recovery Specific 1984, JW Late 325, Neuro-1 L1 Upreg
(11 20 00), Peter's Acetyl-P001 Superset, Peter's All
Muscle Genes (1 16 01), Peter's Dorsal List (02-19-01),
Peter's L1-Dorsal+Excr avg (99.9), Peter's L1 Muscle
Genes (95 Con; 02-01-01), Peter's L2 Muscle (95 Con;
02-01-01), Peter's Lev UP unc-29 DOWN (anova+10),
Peter's Superset of L1-L2 Genes (considering 99.9, PJ
836 muscle and intestine in common, PJ 1005I0.05M0.001,
PJ 1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500, PJ No5 first
1500, PJ No8 First 1500, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJ No 2 first 1500,
PJRGDPAPER-Collagens (All), PJRGDPAPER-Collagens
(Non-BM), PJRGDPAPER-Collagens (unspecified),
PJRPAPER-1329 L1 Muscle Genes (Chromo II),
PJRPAPER-1329 L1 Muscle List (genes within 10,
PJRPAPER-Cell Adhesion, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome II Genes, PJRPAPER-CLustered muscle
genes (12 16 01), PJRPAPER-Collagens, PJRPAPER-Cuticle
Collagens, PJRPAPER-Cuticle Collagens Grp1, PJRPAPER-L1
Muscle Genes (95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zU29WLev up, PJRPAPERz-L1 Cluster (10 kb; no
para or ops), PJRPAPERz-L1 Clustered(without Paralogues
wit, PJRPAPERz-L2 Clustered (inc Operons not Paral,
PJRPAPERz-L2 Clustered(without Paralogues wit, Proteome
Funct Class (Mar 2000)-Structural Protein, Proteome LG
II [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes
B0491.3 B0491.3 P W All gene names: B0491.3; 2L628; CE02105; WBGene00007190; WP:CE02105
Member of lists ( lists):
400 N2 hs min (egg), 1003 N2 hs min
(egg + L2), mount04, R=0.41, aging p < .001 (May
2001), Aging p < .01, Aging, p<.001 aging subset,
Aging.p01, Aging.p001, Eggs HS genes 99.9%,
Male-enriched, PJ 2378 IntestineMusclettest0.01, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome II Genes, PJRPAPER-Muslce
(L1) negative controls-2, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, YK genes 95% different in muscle and intestin
B0491.4 B0491.4 P W All gene names: B0491.4; 2L630; CE02106; WBGene00007191; WP:CE02106
Member of lists ( lists):
mount00, R=0.11, PJRPAPER-Chromosome
II Genes, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG II [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, YK genes 95% different in muscle
and intestin
B0491.6 B0491.6 P W All gene names: B0491.6; B0491.6.1; B0491.6.2; 2L636; CE02108; WBGene00007193; WP:CE02108
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), mount11, R=0.38, Aging.p01, Aging.p001,
daf-16 p<.001, 7-01, daf-16 (p < .001), L2 Hs genes
99.9, PJ 1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R16 First 1500, PJRPAPER-Chromosome II
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG II [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, YK genes 95%
different in muscle and intestin
B0495.10 B0495.10 P W All gene names: tag-178; B0495.10; 2I2; CE01760; CE32105; CE33266; WBGene00007044; WBGene00015209; WP:CE01760; WP:CE32105; WP:CE33266
Member of lists ( lists):
mount01, R=0.15, daf-2 1384 min,
daf-2 1384 InAgingSetMin3ClusterA, JW Common Kinetics
446 v3, JW Dauer ANOVA 2430 v4, PJRPAPER-Chromosome II
Genes, PJRPAPER-Muscle negative controls, Proteome Cell
Role (Oct 2000)- Membrane Fusion, Proteome Cell Role
(Oct 2000)- Vesicular Transport, Proteome Funct Class
(Mar 2000)-Small Molecule Bin, Proteome LG II [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
B0495.4 B0495.4 P W All gene names: nhx-2; B0495.4; 2H982; CE29549; NM_063213; WBGene00003730; WP:CE29549 WormBase description: nhx-2 encodes a sodium/proton exchanger expressed in the apical membranes of intestinal cells; NHX-2 is required for normally high growth rates, and for propagation or maintenance of the germline, NHX-2 is thought to prevent intracellular acidification by catalysing the electroneutral exchange of extracellular sodium for an intracellular proton. WormBase CDS description: NA(+)/H(+) exchanger
Member of lists ( lists):
mount24, R=0.37, Bea L2 mixed 709,
daf-16 p<.001, 7-01, FP 1938 Intestine genes, JW Dauer
ANOVA 2430 v4, JW Dauer Recovery Specific 1984, JW
Early 538, PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome II Genes,
Proteome Cell Role (Oct 2000)- Small Molecule Tran,
Proteome Funct Class (Mar 2000)-Active Transporter,
Proteome Funct Class (Mar 2000)-Transporter, Proteome
LG II [May 2002], Proteome Localization (Oct
2000)-Unspecified membr, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK intestinal genes (p<.001), YK Similar muscle
and intestine genes
B0496.1 B0496.1 P W All gene names: B0496.1; 4I209; CE06713; WBGene00015210; WP:CE06713
Member of lists ( lists):
mount04, R=0.41, Bea L2 mixed 709, PJ
No10-1-R16 First 1500, PJRPAPER-Chromosome IV Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0496.2 B0496.2 P W All gene names: B0496.2; 4I215; CE06714; WBGene00015211; WP:CE06714
Member of lists ( lists):
mount09, R=0.16, FP 1938 Intestine
genes, GDPAPER-Prelim Mixed Muscle, Peter's All Muscle
Genes (1 16 01), Peter's Neuro (95; 06-18-01), Peter's
Neuro (99; 06-18-01), Peter's Neuro (99.9; 06-18-01),
Peter's Neuro-non-musc(sp&enri;fr99.9 Superset),
Peter's UP-Reg Muscle (10 25 00), PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome IV Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK intestinal genes (p<.001), YK Similar muscle
and intestine genes
B0511.1 B0511.1 P W All gene names: fkb-7; B0511.1; 1L245; CE26851; NM_060391; WBGene00001432; WP:CE26851 WormBase description: fkb-7 encodes a peptidylprolyl cis/trans isomerase homologous to mammalian FK506-binding proteins; by homology, FKB-7 could function in a number of different processes including protein folding, signal transduction, and regulation of muscle contraction; however, as loss of fkb-7 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of FKB-7 in C. elegans development and/or behavior is not yet known.
Member of lists ( lists):
mount06, R=0.21, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome Funct Class
(Mar 2000)-Isomerase, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order
B0511.12 B0511.12 P W All gene names: B0511.12; 1L232; CE28877; WBGene00015237; WP:CE28877
Member of lists ( lists):
mount05, R=0.22, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome I Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Proteome Localization (Oct
2000)-Unspecified membr, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
B0511.3 B0511.3 P W All gene names: fbxa-125; B0511.3; 1L225; CE17342; WBGene00015229; WP:CE17342 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Member of lists ( lists):
1214-L2-99-min, mount04, R=0.41,
age1-216daf2-1384All In age1daf2 modif 703 mi, daf-2
1384 InAgingSetMin3ClusterB, daf-2 1384 min, PJ No8
First 1500, PJRPAPER-Chromosome I Genes, PJRPAPER-L1
Muscle Genes (95), PJRPAPER-Muscle negative controls,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
B0511.4 B0511.4 P W All gene names: tag-344; B0511.4; 1L223; CE17343; WBGene00015230; WP:CE17343 WormBase description: protein kinase
Member of lists ( lists):
mount04, R=0.41, age1-216daf2-1384All
In age1daf2 modif 703 mi, age-1 daf-2 comm 999
InAge1daf2ClusterBD 133., daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, Male-enriched, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome I Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Serine/Threonine Kinases, PJRPAPER-Sperm
Genes, Protein kinases, Proteome Cell Role (Oct 2000)-
Protein Modificatio, Proteome Cell Role (Oct 2000)-
Signal Transduction, Proteome Funct Class (Mar
2000)-Transferase, Proteome Funct Class (Mar
2000)-Protein Kinase, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
B0511.5 B0511.5 P W All gene names: B0511.5; 1L205; CE17344; WBGene00015231; WP:CE17344
Member of lists ( lists):
mount21, R=0.30, JW AdjD T0 vs L1 T0
short 254, JW Dauer ANOVA 2430 v4, JW Dauer Enriched by
AdjDT0 vs L1T0, JW Dauer Recovery Specific 1984, JW
Transient 195, Peter's Neuro (95; 06-18-01),
PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
B0511.7 B0511.7 P W All gene names: B0511.7; 1L208; CE34246; WBGene00015233; WP:CE34246
Member of lists ( lists):
771-Egg-99-min, mount02, R=0.15,
stuart layer13, Art-1-7, Oocyte-enriched,
PJRPAPER-Chromosome I Genes, PJRPAPER-Oocyte Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0513.4 B0513.4 P W All gene names: B0513.4; 4O645; CE15560; WBGene00007196; WP:CE15560
Member of lists ( lists):
771-Egg-99-min, mount22, R=0.58,
Aging p < .01, GDPAPER-Prelim Mixed Muscle, josh
laura1/2 common, Peter's All Muscle Genes (1 16 01),
Peter's L1 Muscle Genes (95 Con; 02-01-01), Peter's
UP-Reg Muscle (10 25 00), PJ 1445 M0.05I0.001, PJ 1617
Muscle and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, PJRPAPER-Muslce
(L1) negative controls-2, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
B0513.5 B0513.5 P W All gene names: B0513.5; 4O634; CE37309; WBGene00007197; WP:CE37309
Member of lists ( lists):
1214-L2-99-min, mount16, R=0.40, JW
Climbing 386, JW Dauer ANOVA 2430 v4, JW Dauer Recovery
Specific 1984, Male-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Oxidoreductase, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome Funct Class (Mar
2000)-Oxidoreductases, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
B0513.7 B0513.7 P W All gene names: B0513.7; 4O598; WBGene00007199
Member of lists ( lists):
400 N2 hs min (egg), 1003 N2 hs min
(egg + L2), mount25, R=0.44, Eggs HS genes 99.9%, JW
Dauer Enriched AdjT0 vs AdjT12, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
B0523.3 B0523.3 P W All gene names: pgl-2; B0523.3; 3J758; CE20462; NM_066510; WBGene00003993; WP:CE20462
Member of lists ( lists):
mount07, R=0.43, Aging p < .01,
GD-Chol "\/", GD-U29-Sp (wrt Lev 95), GD-U29 muscle
genes, GD-U29-Sp (wrt L1 95), Germ line-enriched,
Hermaphrodite-enriched, josh laura1/2 common, Peter's
Acetyl-P001 Superset, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zU29WLev down-up,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG III [May 2002], Ras
spe99, Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
B0523.5 B0523.5 P W All gene names: CE-FLI-1; ach-1; fli-1; B0523.5; 3J768; CE36522; NM_066512; WBGene00001443; WP:CE36522 WormBase description: fli-1 encodes a homolog of Drosophila flightless-I; can interact with human Ha-Ras and human actin in vitro; mRNA levels are highest in embryos.
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), mount05, R=0.22, stuart layer7, josh
laura2 4/8 common, L2 Hs genes 99.9, PJ No5 first 1500,
PJRPAPER-Chromosome III Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
B0546.2 B0546.2 P W All gene names: B0546.2; B0546.2.1; B0546.2.2; 4E138; CE30591; WBGene00015249; WP:CE30591
Member of lists ( lists):
mount02, R=0.15, GD-Chol NSD/AMB,
GD-U29 muscle genes, GD-U29-Sp (wrt L1 95), Peter's
Acetyl-P001 Superset, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome IV Genes, PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order
B0546.4 B0546.4 P W All gene names: B0546.4; 4E148; CE16795; CE33354; WBGene00015251; WP:CE16795; WP:CE33354
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), Bea ras L2 mixed 561, bea RasL2 486
genes, mount15, R=0.37, Bea L2 mixed 709, Bea Ras L2
time course (99%), FP 645 Intestine specific genes, FP
1938 Intestine genes, GD-Chol NSD/AMB, GD-GABA NSD/AMB
(Anova/TTest), GD-Lev Muscle Genes, GD-U25 muscle,
GD-U29 muscle genes, JW Common Kinetics 446 v3, JW
Dauer ANOVA 2430 v4, JW Dauer Enriched AdjT0 vs AdjT12,
L2 Hs genes 99.9, operon first genes, Peter's
Acetyl-P001 Superset, Peter's Neuro (95; 06-18-01),
Peter's Neuro (99; 06-18-01), Peter's Neuro (99.9;
06-18-01), PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome IV Genes, PJRPAPER-zLev-Genes,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
IV [May 2002], rasl2, Reinke et al 2004, list of genes
in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin,
YK intestinal genes (p<.001), YK intestine-specific
genes
B0564.6 B0564.6 P W All gene names: B0564.6; 4N895; CE05180; CE05182; WBGene00007206; WP:CE05180; WP:CE05182 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
Member of lists ( lists):
mount06, R=0.21, JW Common Kinetics
446 v3, JW Dauer ANOVA 2430 v4, JW SAGE Dauer all, JW
SAGE Dauer on Array v1, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG IV
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
B0564.7 B0564.7 P W All gene names: B0564.7; B0564.7.1; B0564.7.2; 4N867; CE36971; WBGene00007207; WP:CE36971 WormBase description: Zinc finger, C3HC4 type (RING finger)
Member of lists ( lists):
Proteome LG IV [May 2002], Reinke et
al 2004, list of genes in cluster order
BE10.2 BE10.2 P W All gene names: BE10.2; 3N884; CE30592; WBGene00007210; WP:CE30592
Member of lists ( lists):
mount14, R=0.38, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW Late 325,
PJRPAPER-Chromosome III Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
BE10.4 BE10.4 P W All gene names: BE10.4; 3N905; CE15567; WBGene00007212; WP:CE15567
Member of lists ( lists):
771-Egg-99-min, mount01, R=0.15,
Neuro-1 L1 Upreg (11 20 00), PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG III
[May 2002], Reinke et al 2004, list of genes in cluster
order, YK genes 95% different in muscle and intestin
C01A2.2 C01A2.2 P W All gene names: C01A2.2; 1N989; CE07784; WBGene00007214; WP:CE07784
Member of lists ( lists):
mount00, R=0.11, PJRPAPER-Chromosome
I Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, sir2.1--ok434all 558 min,
sir2.1-- 297 min
C01A2.4 C01A2.4 P W All gene names: C01A2.4; 1N983; CE34247; WBGene00007216; WP:CE34247
Member of lists ( lists):
204 diff min, 684 N2 hs min (L2), 1003
N2 hs min (egg + L2), bea RasL2 486 genes, mount02,
R=0.15, Aging.p01, Aging.p001, GD-Chol NSD/AMB, GD-GABA
NSD/AMB (Anova/TTest), GD-U25 muscle, GD-U29-Sp (wrt
Lev 95), GD-U29 muscle genes, L2 Hs genes 99.9, Peter's
Acetyl-P001 Superset, Peter's L2 Muscle (95 Con;
02-01-01), PJ 1235 intestine-sepcific, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No5 first 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome I Genes,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
I [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes
C01B10.10 C01B10.10 P W All gene names: C01B10.10; 4H390; CE37180; WBGene00015284; WP:CE37180
Member of lists ( lists):
mount08, R=0.21, GD-Chol "\/", GD-U29
muscle genes, GD-U29-Sp (wrt L1 95), Peter's
Acetyl-P001 Superset, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome IV Genes, PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zU29WLev down-up,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome Funct Class (Mar
2000)-Hydrolase, Proteome LG IV [May 2002], Proteome
Localization (Oct 2000)-Cytoplasmic, Reinke et al 2004,
list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C01B10.3 C01B10.3 P W All gene names: C01B10.3; 4H384; CE33355; WBGene00015278; WP:CE33355
Member of lists ( lists):
1214-L2-99-min, mount19, R=0.29,
daf-2 1384 min, daf-2 1384 InAgingSetMin3ClusterA, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
JW Early 538, PJRPAPER-Chromosome IV Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
IV [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes
C01B10.4 C01B10.4 P W All gene names: C01B10.4; 4H396; CE34641; WBGene00015279; WP:CE34641
Member of lists ( lists):
mount03, R=0.13, PJRPAPER-Chromosome
IV Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome Funct Class (Mar 2000)-Hydrolase, Proteome LG
IV [May 2002], Proteome Localization (Oct
2000)-Cytoplasmic, Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin
C01B10.8 C01B10.8 P W All gene names: C01B10.8; C01B10.8.1; C01B10.8.2; 4H401; CE06739; WBGene00015282; WP:CE06739
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), Bea ras L2 mixed 561, bea RasL2 486
genes, mount02, R=0.15, JW Common Kinetics 446 v3, JW
Dauer ANOVA 2430 v4, L2 Hs genes 99.9,
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C01B10.9 C01B10.9 P W All gene names: C01B10.9; 4H399; CE37181; WBGene00015283; WP:CE37181
Member of lists ( lists):
mount07, R=0.43, operon first genes,
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C01B12.1 C01B12.1 P W All gene names: sqt-2; C01B12.1; 2A315; CE07789; NM_061234; WBGene00005017; WP:CE07789 WormBase description: Uncloned locus that affects alae formation and body morphology such that mutants exhibit a slightly dumpy phenotype and the bodies of mutants are helically twisted. WormBase CDS description: cuticular collagen
Member of lists ( lists):
mount16, R=0.40, Cell Structure,
Collagen, JW Dauer ANOVA 2430 v4, JW Dauer Recovery
Specific 1984, JW Late 325, JW SAGE mixed stage,
Peter's L1 Muscle Genes (95 Con; 02-01-01), Peter's L2
Muscle (95 Con; 02-01-01), PJ 1235 intestine-sepcific,
PJ 1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No5 first 1500, PJ No8
First 1500, PJ No10-1-R16 First 1500, PJ No10-1-R15
First 1500, PJRGDPAPER-Collagens (All),
PJRGDPAPER-Collagens (Non-BM), PJRGDPAPER-Collagens
(unspecified), PJRPAPER-Chromosome II Genes,
PJRPAPER-Collagens, PJRPAPER-Cuticle Collagens,
PJRPAPER-Cuticle Collogens Grp2, PJRPAPER-L1 Muscle
Genes (95), Proteome Cell Role (Oct 2000)- Cell
Structure, Proteome Funct Class (Mar 2000)-Structural
Protein, Proteome LG II [May 2002], Proteome
Localization (Oct 2000)-Extracellular (ex, Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C01B12.7 C01B12.7 P W All gene names: C01B12.7; 2A316; CE07795; WBGene00015290; WP:CE07795
Member of lists ( lists):
mount01, R=0.15, stuart layer12,
GD-Chol Down, GD-U29-Sp (wrt Lev 95), GD-U29 muscle
genes, GD-U29-Sp (wrt L1 95), JW Dauer ANOVA 2430 v4,
JW Dauer Recovery Specific 1984, JW Early 538, Peter's
Acetyl-P001 Superset, Peter's Dorsal List (02-19-01),
Peter's L1 Muscle Genes (95 Con; 02-01-01), Peter's
L1-Dorsal+Excr avg (99.9), Peter's Neuro (95;
06-18-01), PJ 1445 M0.05I0.001, PJ 1617 Muscle and
intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome II
Genes, PJRPAPER-L1 Muscle Genes (95),
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zU29WLev down,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta
C01B4.3 C01B4.3 P W All gene names: str-258; C01B4.3; 5C989; CE20472; NM_071285; WBGene00006284; WP:CE20472 WormBase description: 7TM chemoreceptor, str family
Member of lists ( lists):
Reinke et al 2004, list of genes in
cluster order
C01B7.4 C01B7.4 P W All gene names: tag-117; C01B7.4; 5J272; CE06728; WBGene00006467; WP:CE06728 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: guanylate kinase
Member of lists ( lists):
1214-L2-99-min, Bea ras L2 mixed 561,
bea RasL2 486 genes, mount01, R=0.15, Bea common
HSlet60-let60 groupB, Bea L2 mixed 709, daf-2 1384 min,
daf-2 1384 InAgingSetMin3ClusterA, PDZ domain genes,
PJRPAPER-Chromosome V Genes, PJRPAPER-PDZ-Containing
Proteins, PJRPAPER-Serine/Threonine Kinases, Protein
kinases, Proteome Cell Role (Oct 2000)- Protein
Modificatio, Proteome Cell Role (Oct 2000)- Signal
Transduction, Proteome Funct Class (Mar
2000)-Transferase, Proteome Funct Class (Mar
2000)-Protein Kinase, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, wmyst
C01B9.1 C01B9.1 P W All gene names: C01B9.1; 2O67; CE17359; WBGene00007220; WP:CE17359
Member of lists ( lists):
mount01, R=0.15, JW Common Kinetics
446 v3, JW Dauer ANOVA 2430 v4, PJ 4212
IntestineMuscleTtest0.05, PJ No5 first 1500,
PJRPAPER-Chromosome II Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
C01C10.1 C01C10.1 P W All gene names: clc-2; C01C10.1; CE28881; WBGene00000523; WP:CE28881; XI51 WormBase description: clc-2 encodes a claudin homolog, closely similar to CLC-1, that is required for normal cohesion of apical junctions in epithelia; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water; CLC-2 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the hypodermis to dyes; clc-2 is expressed in hypodermal seam cells, with two diffuse lines of CLC-2 protein.
Member of lists ( lists):
1214-L2-99-min, mount02, R=0.15,
age1-216daf2-1384All In age1daf2 modif 703 mi, daf-2
1384 InAgingSetMin3ClusterB, daf-2 1384 min, GD-Chol
Down, GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes,
GD-U29-Sp (wrt L1 95), Peter's Acetyl-P001 Superset,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome X Genes,
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C01C7.1 C01C7.1 P W All gene names: ark-1; rok-1; C01C7.1; 4N388; CE26967; NM_070017; WBGene00000186; WP:CE26967 WormBase description: ark-1 encodes a homolog of the nonreceptor tyrosine kinase ACK which inhibits signalling through the EGF receptor homolog LET-23, both in (RAS-dependent) vulval development and in (RAS-independent) ovulation. WormBase CDS description: Src homology domain 3, tyrosine-protein kinase (ACK subfamily)
Member of lists ( lists):
mount05, R=0.22, Bea Ras pathway,
GD-Chol NSD/AMB, GD-L2 Muscle Genes, GD-Lev Muscle
Genes, GD-U29 muscle genes, GDPAPER-Prelim Mixed
Muscle, JW 1703 merged Peters zMuscle 8-02, Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's Superset
of L1-L2 Genes (considering 99.9, Peter's UP-Reg Muscle
(10 25 00), PJ 1899 IntestineMuscleCon95incommon, PJ
4746 intestinal gene Con95, PJ No4 first1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome IV Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-Ras Pathway,
PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Protein kinases, Proteome Cell
Role (Oct 2000)- Signal Transduction, Proteome LG IV
[May 2002], Ras pathway, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C01F1.3 C01F1.3 P W All gene names: phi-41; C01F1.3; C01F1.3a.1; C01F1.3a.2; 2E587; CE06744; CE39553; WBGene00015298; WP:CE06744; WP:CE39553
Member of lists ( lists):
mount14, R=0.38, stuart layer12, Bea
L2 mixed 709, Biosynthesis, Carbohydrate metabolism, JW
Climbing 386, JW Dauer ANOVA 2430 v4, JW Dauer Recovery
Specific 1984, Nucleotide synthesis genes, Peter's L1
Muscle Genes (95 Con; 02-01-01), Peter's L2 Muscle (95
Con; 02-01-01), PJRPAPER-Carbohydrate Metabolism,
PJRPAPER-Carbohydrate Metabolism (no mito gen,
PJRPAPER-Chromosome II Genes, PJRPAPER-L1 Muscle Genes
(95), PJRPAPER-Nucleotide Metabolism, Proteome Cell
Role (Oct 2000)- Nucleotide Synthesi, Proteome Cell
Role (Oct 2000)- Carbohydrate Metabo, Proteome Funct
Class (Mar 2000)-Lyase, Proteome LG II [May 2002],
Proteome Localization (Oct 2000)-Cytoplasmic, Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
C01F1.5 C01F1.5 P W All gene names: C01F1.5; 2E570; CE06746; WBGene00015300; WP:CE06746
Member of lists ( lists):
mount14, R=0.38, FP 464 Muscle
specific genes, GD-Chol UP, GD-L1 Muscle Genes,
GD-L1-Sp (wrt U29 95), Peter's Acetyl-P001 Superset,
Peter's All Muscle Genes (1 16 01), Peter's L1 Muscle
Genes (95 Con; 02-01-01), Peter's Lev UP unc-29 DOWN
(anova+10), Peter's Musc-non-neuro(sp&enri;fr99.9
Superset), Peter's ventral muscle-Specific (p<0.05),
Peter's Ventral-Specific L1 (95) list (02-28-01),
PJRPAPER-Chromosome II Genes, PJRPAPER-CLustered muscle
genes (12 16 01), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG II
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin, YK
muscle-specific genes
C01F1.6 C01F1.6 P W All gene names: C01F1.6; 2E574; CE39125; WBGene00015301; WP:CE39125
Member of lists ( lists):
mount11, R=0.38, FP 464 Muscle
specific genes, GD-Chol NSD/AMB, GD-L1 Muscle Genes,
GD-U29 muscle genes, GDPAPER-Prelim Mixed Muscle, JW
1703 merged Peters zMuscle 8-02, Oocyte-enriched,
Peter's Acetyl-P001 Superset, Peter's All Muscle Genes
(1 16 01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, Peter's
UP-Reg Muscle (10 25 00), PJRPAPER-1329 L1 Muscle Genes
(Chromo II), PJRPAPER-1329 L1 Muscle List (genes
without 1, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome II Genes, PJRPAPER-CLustered muscle
genes (12 16 01), PJRPAPER-L1 Muscle Genes (95),
PJRPAPER-L1 Muscle Genes (1364), PJRPAPER-Oocyte Genes,
PJRPAPER-zL1 Muscle Genes, PJRPAPER-zL1vL2 nsd,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
II [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin, YK
muscle-specific genes
C01F6.1 C01F6.1 P W All gene names: C01F6.1; 4J865; CE02950; WBGene00007221; WP:CE02950
Member of lists ( lists):
mount07, R=0.43, GD-GABA "\/"
(Anova/TTest), GD-U25 muscle, Peter's Neuro (95;
06-18-01), Peter's Neuro (99; 06-18-01),
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Membrane Fusion, Proteome Cell Role (Oct 2000)-
Vesicular Transport, Proteome Funct Class (Mar
2000)-Small Molecule Bin, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C01F6.2 C01F6.2 P W All gene names: C01F6.2; CE26968; WBGene00007222; WP:CE26968
Member of lists ( lists):
mount04, R=0.41, Art-1-7, male99,
Male-enriched, PJ 1158IntestineMuscleTTEST0.001, PJ
2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Male Genes, PJRPAPER-Muslce (L1) negative
controls-2, PJRPAPER-Sperm Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Sperm-enriched, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C01F6.3 C01F6.3 P W All gene names: ccp-31A1; cyp-31A1; C01F6.3; 4J866; NM_069185; WBGene00000374
Member of lists ( lists):
mount07, R=0.43, Art-1-7, josh
laura1/2 common, JW P450s Full, Lipid metabolism genes,
PJ 1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Lipid, fatty-acid and sterol metabolism,
PJRPAPER-Oxidoreductase, PJRPAPER-P450, Proteome Cell
Role (Oct 2000)- Lipid, Sterol & Fat, Proteome Funct
Class (Mar 2000)-Oxidoreductases, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C01F6.4 C01F6.4 P W All gene names: fem-3; C01F6.4; 4J871; CE02953; NM_069186; WBGene00001413; WP:CE02953 WormBase description: fem-3 encodes a novel protein that promotes male development in all tissues. WormBase CDS description: sex-determining protein (FEM-3)
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
josh laura1/2 common, Oocyte-enriched, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, PJRPAPER-Oocyte
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG IV [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes
C01G10.1 C01G10.1 P W All gene names: C01G10.1; 5P583; CE07810; WBGene00007230; WP:CE07810 WormBase description: ankyrin repeat
Member of lists ( lists):
mount13, R=0.10, PJRPAPER-Chromosome
V Genes, PJRPAPER-Muscle negative controls,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C01G10.14 C01G10.14 P W All gene names: C01G10.14; 5P586; CE07823; WBGene00007239; WP:CE07823
Member of lists ( lists):
mount04, R=0.41, Aging.p01, josh
laura1/2 common, male99, Male-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R15 First 1500, PJ No10-1-R16 First
1500, PJRPAPER-Chromosome V Genes, PJRPAPER-Male Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
V [May 2002], Proteome Localization (Oct
2000)-Unspecified membr, Reinke et al 2004, list of
genes in cluster order, rosetta, Sperm-enriched,
Valerie Reinke's 11927 genes
C01G10.5 C01G10.5 P W All gene names: C01G10.5; 5P570; CE07814; WBGene00007232; WP:CE07814
Member of lists ( lists):
PJ 4212 IntestineMuscleTtest0.05,
PJRPAPER-Chromosome V Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, sir2.1--ok434all 558 min, sir2.1-- 297 min,
Valerie Reinke's 11927 genes
C01G10.7 C01G10.7 P W All gene names: C01G10.7; 5P567; CE07816; WBGene00007234; WP:CE07816 WormBase description: citrate lyase beta chain
Member of lists ( lists):
1214-L2-99-min, mount07, R=0.43, PJ
2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C01G10.9 C01G10.9 P W All gene names: C01G10.9; 5P563; CE07818; WBGene00007236; WP:CE07818 WormBase description: Initiation factor 2 subunit
Member of lists ( lists):
1214-L2-99-min, mount01, R=0.15, Bea
L2 mixed 709, Bea Ras L2 time course (99%), FP 645
Intestine specific genes, FP 1938 Intestine genes, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
JW Early 538, PJRPAPER-Chromosome V Genes, Proteome LG
V [May 2002], rasl2, Reinke et al 2004, list of genes
in cluster order, rosetta, Valerie Reinke's 11927
genes, wmyst, YK genes 95% different in muscle and
intestin, YK intestinal genes (p<.001), YK
intestine-specific genes
C01G12.6 C01G12.6 P W All gene names: nspb-10; C01G12.6; 2O874; CE15575; WBGene00007246; WP:CE15575
Member of lists ( lists):
mount29, R=0.53, Peter's L2 Muscle
(95 Con; 02-01-01), PJ 2378 IntestineMusclettest0.01,
PJ 4212 IntestineMuscleTtest0.05, PJ 4746 intestinal
gene Con95, PJRPAPER-Chromosome II Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG II
[May 2002], Reinke et al 2004, list of genes in cluster
order, YK genes 95% different in muscle and intestin
C01G12.8 C01G12.8 P W All gene names: C01G12.8; 2O883; CE15577; WBGene00007248; WP:CE15577 WormBase description: sodium/potasssium transporting ATPase
Member of lists ( lists):
mount04, R=0.41, ATPases,
Biosynthesis, Male-enriched, PJRPAPER-Chromosome II
Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Small Molecule Tran, Proteome Funct Class (Mar
2000)-Active Transporter, Proteome Funct Class (Mar
2000)-Transporter, Proteome Funct Class (Mar
2000)-ATPase, Proteome Funct Class (Mar
2000)-Hydrolase, Proteome LG II [May 2002], Proteome
Localization (Oct 2000)-Unspecified membr, Reinke et al
2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes, wmyst, YK
genes 95% different in muscle and intestin
C01G5.2 C01G5.2 P W All gene names: tag-292; C01G5.2; 4H292; CE06748; WBGene00015304; WP:CE06748
Member of lists ( lists):
mount07, R=0.43, Germ line-enriched,
PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No10-1-R15 First 1500, PJ
No10-1-R16 First 1500, PJ No 2 first 1500,
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C01G5.3 C01G5.3 P W All gene names: C01G5.3; 4H301; CE06749; WBGene00015305; WP:CE06749
Member of lists ( lists):
mount04, R=0.41, GD-GABA "\/"
(Anova/TTest), GD-U25 muscle, Male-enriched, Peter's
Neuro (95; 06-18-01), Peter's Neuro (99; 06-18-01),
Peter's Neuro (99.9; 06-18-01), Peter's
Neuro-non-musc(sp&enri;fr99.9 Superset),
PJRPAPER-Chromosome IV Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
IV [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes
C01G5.5 C01G5.5 P W All gene names: C01G5.5; 4H291; CE06751; WBGene00015307; WP:CE06751 WormBase description: aldehyde reductase
Member of lists ( lists):
771-Egg-99-min, 1214-L2-99-min,
mount02, R=0.15, Art-1-7, daf-16 p<.001, 7-01, FP 1938
Intestine genes, GD-Chol "\/", GD-U29 muscle genes,
GD-U29-Sp (wrt L1 95), Hermaphrodite-enriched,
Oocyte-enriched, Peter's Acetyl-P001 Superset, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome IV
Genes, PJRPAPER-Oocyte Genes, PJRPAPER-Oxidoreductase,
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zU29WLev
down-up, PJRPAPER-zU29-Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome Funct Class (Mar
2000)-Oxidoreductases, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, wmyst, YK
intestinal genes (p<.001), YK Similar muscle and
intestine genes
C01G5.6 C01G5.6 P W All gene names: C01G5.6; 4H289; CE23513; WBGene00015308; WP:CE23513
Member of lists ( lists):
1214-L2-99-min, mount11, R=0.38, JW
AdjD T0 vs L1 T0 short 254, JW AdjD T0 vs AdjD T12
short 406, JW Dauer ANOVA 2430 v4, JW Dauer Enriched
AdjT0 vs AdjT12, JW Dauer Enriched by AdjDT0 vs L1T0,
JW Dauer Recovery Specific 1984, JW Down 540, JW Down
Late 162, operon first genes, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C01G5.8 C01G5.8 P W All gene names: C01G5.8; 4H315; CE07800; WBGene00015310; WP:CE07800
Member of lists ( lists):
mount07, R=0.43, Art-1-7, Germ
line-enriched, Peter's Neuro (95; 06-18-01),
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C01G6.2 C01G6.2 P W All gene names: C01G6.2; 2J557; CE02958; WBGene00007224; WP:CE02958
Member of lists ( lists):
mount04, R=0.41, male99,
Male-enriched, PJ 1235 intestine-sepcific, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R16 First 1500, PJ No 2 first 1500,
PJRPAPER-Chromosome II Genes, PJRPAPER-Male Genes,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C01G6.3 C01G6.3 P W All gene names: C01G6.3; 2J561; CE37474; WBGene00007225; WP:CE37474
Member of lists ( lists):
mount12, R=0.29, PJ No 2 first 1500,
PJRPAPER-Chromosome II Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C01G6.5 C01G6.5 P W All gene names: C01G6.5; 2J566; CE00867; WBGene00007227; WP:CE00867 WormBase description: Forkhead-associated (FHA) domain
Member of lists ( lists):
1214-L2-99-min, mount05, R=0.22,
stuart layer7, Oocyte-enriched, PJRPAPER-Chromosome II
Genes, PJRPAPER-Oocyte Genes, PJRPAPER-Transcription
factors (good list), Proteome Cell Role (Oct 2000)- Pol
II Transcriptio, Proteome Funct Class (Mar
2000)-Transcription Fact, Proteome Funct Class (Mar
2000)-DNA-binding Domain, Proteome LG II [May 2002],
Proteome Localization (Oct 2000)-Nuclear, Reinke et al
2004, list of genes in cluster order, RNA pol II
transcription, rosetta, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin
C01G6.7 C01G6.7 P W All gene names: C01G6.7; 2J583; CE00869; WBGene00007228; WP:CE00869 WormBase description: 4-coumarate-coA ligase
Member of lists ( lists):
mount01, R=0.15, age1-216daf2-1384All
In age1daf2 modif 703 mi, age-1 daf-2 comm 999
InAge1daf2ClusterBD 133., Aging p < .01, Biosynthesis,
cluster 227 min, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterB, Energy generation genes, FP
1938 Intestine genes, JW AdjD T0 vs AdjD T12 short 406,
JW Dauer ANOVA 2430 v4, JW Dauer Enriched AdjT0 vs
AdjT12, JW Dauer Recovery Specific 1984, JW Down 540,
JW Down Late 162, PJ 1158IntestineMuscleTTEST0.001, PJ
2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJRPAPER-Chromosome II Genes,
PJRPAPER-Energy Generation, Proteome Cell Role (Oct
2000)- Energy Generation, Proteome Funct Class (Mar
2000)-Ligase, Proteome LG II [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, wmyst, YK intestinal genes
(p<.001), YK Similar muscle and intestine genes
C01G6.9 C01G6.9 P W All gene names: C01G6.9; 2J584; CE00871; WBGene00007229; WP:CE00871
Member of lists ( lists):
mount12, R=0.29, Aging p<.001, daf-2
1384 min, daf-2 1384 InAgingSetMin3ClusterA, Peter's
Neuro (95; 06-18-01), PJRPAPER-Chromosome II Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG II
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta
C01G8.1 C01G8.1 P W All gene names: C01G8.1; 1F842; CE07801; WBGene00015312; WP:CE07801
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Art-1-7, Germ line-enriched, josh laura1/2 common, PJ
2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce
(L1) negative controls-2, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG I [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
C01G8.3 C01G8.3 P W All gene names: dhs-1; C01G8.3; 1F848; CE07803; NM_059156; WBGene00000965; WP:CE07803 WormBase description: oxidoreductase
Member of lists ( lists):
mount02, R=0.15, daf-16 p<.001, 7-01,
daf-16 (p < .001), GD-Chol NSD/AMB, GD-GABA NSD/AMB
(Anova/TTest), GD-Musc muscle, GD-U25 muscle, GD-U29
muscle genes, Hermaphrodite-enriched, Oocyte-enriched,
Peter's Acetyl-P001 Superset, Peter's Dorsal List
(02-19-01), Peter's L1-Dorsal+Excr avg (99.9), Peter's
L2 Muscle (95 Con; 02-01-01), Peter's Neuro (95;
06-18-01), PJ 3085 intestinal genes, PJ 3118 intestinal
genes, PJ 4746 intestinal gene Con95, PJRPAPER-Cholin
Superset, PJRPAPER-Chromosome I Genes, PJRPAPER-Oocyte
Genes, PJRPAPER-Oxidoreductase, PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome Funct Class (Mar
2000)-Oxidoreductases, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C01G8.4 C01G8.4 P W All gene names: dnj-4; C01G8.4; 1F850; CE26905; NM_059157; WBGene00001022; WP:CE26905 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain.
Member of lists ( lists):
1214-L2-99-min, mount02, R=0.15,
daf-16 p<.001, 7-01, daf-16 (p < .001), GD-GABA "\/"
(Anova/TTest), GD-U25 muscle, Peter's Neuro (95;
06-18-01), Peter's Neuro (99; 06-18-01), Peter's Neuro
(99.9; 06-18-01), Peter's Neuro-non-musc(sp&enri;fr99.9
Superset), PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, Protein expression,
Proteome Cell Role (Oct 2000)- Protein Folding,
Proteome Funct Class (Mar 2000)-Chaperones, Proteome LG
I [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin
C01H6.1 C01H6.1 P W All gene names: col-61; C01H6.1; 1H778; CE05184; NM_059634; WBGene00000637; WP:CE05184 WormBase description: collagen
Member of lists ( lists):
Bea ras L2 mixed 561, bea RasL2 486
genes, mount16, R=0.40, Bea Ras L2 time course (99%),
Collagen, FP 645 Intestine specific genes, FP 1938
Intestine genes, JW Dauer ANOVA 2430 v4, JW Dauer
Recovery Specific 1984, JW Late 325, PJ 1235
intestine-sepcific, PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4212 IntestineMuscleTtest0.05, PJ
4746 intestinal gene Con95, PJRGDPAPER-Collagens (All),
PJRGDPAPER-Collagens (Non-BM), PJRGDPAPER-Collagens
(unspecified), PJRPAPER-Chromosome I Genes,
PJRPAPER-Collagens, PJRPAPER-Cuticle Collagens,
PJRPAPER-Cuticle Collogens Grp1a, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], rasl2,
Reinke et al 2004, list of genes in cluster order,
rosetta, YK genes 95% different in muscle and intestin,
YK intestinal genes (p<.001), YK intestine-specific
genes
C01H6.7 C01H6.7 P W All gene names: tag-298; C01H6.7; 1H803; CE05190; WBGene00007256; WP:CE05190 WormBase description: Bromodomain
Member of lists ( lists):
mount11, R=0.38, stuart layer13,
Art-1-7, daf-16 p<.001, 7-01, Oocyte-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ No 2 first 1500,
PJRPAPER-Chromosome I Genes, PJRPAPER-Oocyte Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C01H6.8 C01H6.8 P W All gene names: C01H6.8; 1H805; CE05191; WBGene00007257; WP:CE05191
Member of lists ( lists):
mount05, R=0.22, FP 645 Intestine
specific genes, FP 1938 Intestine genes, Peter's Neuro
(95; 06-18-01), Peter's Neuro (99; 06-18-01), PJ 3118
intestinal genes, PJ 4746 intestinal gene Con95,
PJRPAPER-Chromosome I Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG I [May 2002],
Reinke et al 2004, list of genes in cluster order, YK
genes 95% different in muscle and intestin, YK
intestinal genes (p<.001), YK intestine-specific genes
C01H6.9 C01H6.9 P W All gene names: C01H6.9; 1H806; CE07824; WBGene00007258; WP:CE07824 WormBase description: C01H6.9 encodes a homolog of haploid germ cell-specific nuclear protein kinase (haspin) that specifically binds GOA-1 in yeast two-hybrid assays; C01H6.9 is expressed in PHB sensory neurons and PVT interneurons in the tail, several unidentified neurons in the head (with projections to the nose and nerve ring), and intestinal cells, with mainly nuclear localization; C01H6.9 has no obvious function or phenotype in RNAi assays, either alone or with inactivation of a close paralog (F22H10.5). WormBase CDS description: Eukaryotic protein kinase domain
Member of lists ( lists):
mount02, R=0.15, Bea L2 mixed 709,
Bea Ras L2 time course (99%), GD-Chol "\/", GD-GABA
"\/" (Anova/TTest), GD-U25 muscle, GD-U29-Sp (wrt Lev
95), GD-U29 muscle genes, GD-U29-Sp (wrt L1 95),
Peter's Acetyl-P001 Superset, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev down-up, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], rasl2, Reinke et al 2004,
list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C02B10.2 C02B10.2 P W All gene names: C02B10.2; 4F854; CE24776; WBGene00015327; WP:CE24776
Member of lists ( lists):
1214-L2-99-min, mount07, R=0.43,
stuart layer13, Art-1-7, FP 1938 Intestine genes, Germ
line-enriched, PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4746 intestinal gene Con95,
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK intestinal
genes (p<.001)
C02B10.4 C02B10.4 P W All gene names: C02B10.4; C02B10.4.1; C02B10.4.2; 4F857; CE16801; WBGene00015329; WP:CE16801
Member of lists ( lists):
771-Egg-99-min, mount11, R=0.38,
Peter's L2 Muscle (95 Con; 02-01-01), PJ 4746
intestinal gene Con95, PJRPAPER-Chromosome IV Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C02B10.5 C02B10.5 P W All gene names: C02B10.5; C02B10.5.1; C02B10.5.2; C02B10.5.3; 4F851; CE16802; WBGene00015330; WP:CE16802
Member of lists ( lists):
mount05, R=0.22, stuart layer13,
age1-216daf2-1384All In age1daf2 modif 703 mi, Art-1-7,
daf-2 1384 min, daf-2 1384 InAgingSetMin3ClusterC,
GDPAPER-Prelim Mixed Muscle, josh laura2 4/8 common,
Peter's All Muscle Genes (1 16 01), Peter's UP-Reg
Muscle (10 25 00), PJRPAPER-Chromosome IV Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, Valerie Reinke's 11927 genes
C02B10.6 C02B10.6 P W All gene names: C02B10.6; 4F837; CE20481; WBGene00015331; WP:CE20481
Member of lists ( lists):
mount04, R=0.41, Art-1-7, male99,
Male-enriched, Peter's Acetyl-P001 Superset, Peter's
All Muscle Genes (1 16 01), Peter's L1 Muscle Genes (95
Con; 02-01-01), Peter's Musc-non-neuro(sp&enri;fr99.9
Superset), Peter's ventral muscle-Specific (p<0.05),
Peter's Ventral-Specific L1 (95) list (02-28-01),
Peters L1-Specific, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Male Genes, PJRPAPER-Muslce (L1) negative
controls-2, PJRPAPER-Protein Phosphotases, Protein
phosphatases, Proteome Cell Role (Oct 2000)- Protein
Modificatio, Proteome Funct Class (Mar 2000)-Protein
Phosphotas, Proteome Funct Class (Mar 2000)-Hydrolase,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta
C02D5.1 C02D5.1 P W All gene names: C02D5.1; 3J649; CE24778; WBGene00015335; WP:CE24778 WormBase description: Isovaleryl-CoA dehydrogenase
Member of lists ( lists):
703 InParaquatMin 109, mount14,
R=0.38, age1-216daf2-1384All In age1daf2 modif 703 mi,
Biosynthesis, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, Fatty acid oxidation genes, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
JW Late 325, Lipid metabolism genes, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, PJRPAPER-Lipid, fatty-acid and sterol
metabolism, PJRPAPER-Oxidoreductase, Proteome Cell Role
(Oct 2000)- Lipid, Sterol & Fat, Proteome Funct Class
(Mar 2000)-Oxidoreductases, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
C02D5.2 C02D5.2 P W All gene names: C02D5.2; 3J647; CE00034; CE39554; WBGene00015336; WP:CE00034; WP:CE39554
Member of lists ( lists):
mount01, R=0.15, FP 464 Muscle
specific genes, GD-Chol Down, GD-GABA NSD/AMB
(Anova/TTest), GD-L1 Muscle Genes, GD-WT-Sp (wrt Lev
95), JW 1703 merged Peters zMuscle 8-02, JW Dauer ANOVA
2430 v4, JW Dauer Recovery Specific 1984, JW Early 538,
Peter's Acetyl-P001 Superset, Peter's All Muscle Genes
(1 16 01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's Superset
of L1-L2 Genes (considering 99.9, Peter's ventral
muscle-Specific (p<0.05), Peter's Ventral-Specific L1
(95) list (02-28-01), PJRPAPER-1329 L1 Muscle Genes
(Chromo III), PJRPAPER-1329 L1 Muscle List (genes
without 1, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-L1 Muscle Genes
(95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtLEV), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zU29WLev down,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin,
YK muscle-specific genes
C02E11.1 C02E11.1 P W All gene names: C02E11.1; C02E11.1a.1; C02E11.1a.2; 5B508; CE28528; CE32040; WBGene00015344; WP:CE28528; WP:CE32040
Member of lists ( lists):
mount05, R=0.22, stuart layer7,
stuart layer10, age1-216daf2-1384All In age1daf2 modif
703 mi, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterC, JW Common Kinetics 446 v3, JW
Dauer ANOVA 2430 v4, JW SAGE Dauer all, JW SAGE Dauer
on Array v1, PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4746 intestinal gene Con95,
PJRPAPER-Chromosome V Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta
C02E7.6 C02E7.6 P W All gene names: C02E7.6; 5F397; CE07843; WBGene00015339; WP:CE07843
Member of lists ( lists):
mount14, R=0.38, stuart layer12,
age1-216daf2-1384All In age1daf2 modif 703 mi, age-1
daf-2 comm 999 InAge1daf2ClusterBD 133., daf-2 1384
min, daf-2 1384 InAgingSetMin3ClusterA, GD-Chol "/\",
GD-GABA Down (Anova/TTest), GD-L1 Muscle Genes,
GD-L1-Sp (wrt U29 95), GD-L2 Muscle Genes, GD-WT-Sp
(wrt Lev 95), JW 1703 merged Peters zMuscle 8-02, JW
Climbing 386, JW Dauer ANOVA 2430 v4, JW Dauer Recovery
Specific 1984, Neuro-1 L1 Upreg (11 20 00), Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's Dorsal List (02-19-01), Peter's
L1-Dorsal+Excr avg (99.9), Peter's L1 Muscle Genes (95
Con; 02-01-01), Peter's L2 Muscle (95 Con; 02-01-01),
Peter's Musc-non-neuro(sp&enri;fr99.9 Superset),
Peter's Superset of L1-L2 Genes (considering 99.9, PJ
836 muscle and intestine in common, PJ 1005I0.05M0.001,
PJ 1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500, PJ No5 first
1500, PJ No8 First 1500, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJRPAPER-1329 L1 Muscle Genes
(Chromo V), PJRPAPER-1329 L1 Muscle List (genes within
10, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V
Genes, PJRPAPER-CLustered muscle genes (12 16 01),
PJRPAPER-L1 Muscle Genes (unknowns from 1329,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1 Muscle Genes
(1364), PJRPAPER-xWT-specific (wrtLEV),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zU29WLev up-down, PJRPAPERz-L1 Cluster (10 kb;
no para or ops), PJRPAPERz-L1 Clustered(without
Paralogues wit, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order
C02E7.7 C02E7.7 P W All gene names: C02E7.7; 5F396; CE07844; WBGene00015340; WP:CE07844
Member of lists ( lists):
mount16, R=0.40, age1-216daf2-1384All
In age1daf2 modif 703 mi, age-1 daf-2 comm 999
InAge1daf2ClusterBD 133., daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, GD-Chol "/\", GD-L1 Muscle
Genes, GD-L1-Sp (wrt U29 95), GD-WT-Sp (wrt Lev 95), JW
1703 merged Peters zMuscle 8-02, JW Climbing 386, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
JW SAGE mixed stage, Peter's Acetyl-P001 Superset,
Peter's All Muscle Genes (1 16 01), Peter's Dorsal List
(02-19-01), Peter's L1-Dorsal+Excr avg (99.9), Peter's
L1 Muscle Genes (95 Con; 02-01-01), Peter's L2 Muscle
(95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, PJ 836
muscle and intestine in common, PJ 1005I0.05M0.001, PJ
1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500, PJ No8 First
1500, PJ No10-1-R16 First 1500, PJ No10-1-R15 First
1500, PJRPAPER-1329 L1 Muscle Genes (Chromo V),
PJRPAPER-1329 L1 Muscle List (genes within 10,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-CLustered muscle genes (12 16 01), PJRPAPER-L1
Muscle Genes (unknowns from 1329, PJRPAPER-L1 Muscle
Genes (95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtLEV), PJRPAPER-xWT-specific
(wrtU29), PJRPAPER-zL1 Muscle Genes, PJRPAPER-zL1vL2
nsd, PJRPAPER-zU29WLev nsd, PJRPAPERz-L1 Cluster (10
kb; no para or ops), PJRPAPERz-L1 Clustered(without
Paralogues wit, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C02F12.7 C02F12.7 P W All gene names: tag-278; C02F12.7; CE03901; WBGene00015356; WP:CE03901; XE304
Member of lists ( lists):
1214-L2-99-min, mount01, R=0.15,
GD-GABA "\/" (Anova/TTest), GD-U25 muscle, Peter's L1
Muscle Genes (95 Con; 02-01-01), Peter's L2 Muscle (95
Con; 02-01-01), Peter's Neuro (95; 06-18-01), Peter's
Neuro (99; 06-18-01), Peter's Neuro (99.9; 06-18-01),
Peter's Neuro-non-musc(sp&enri;fr99.9 Superset),
PJRPAPER-Chromosome X Genes, PJRPAPER-L1 Muscle Genes
(95), Proteome LG X [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes, YK genes 95% different in muscle and
intestin
C02F12.8 C02F12.8 P W All gene names: C02F12.8; CE03902; WBGene00015357; WP:CE03902; XE310
Member of lists ( lists):
mount13, R=0.10, PJ No 2 first 1500,
PJRPAPER-Chromosome X Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG X [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C02F4.1 C02F4.1 P W All gene names: ced-5; C02F4.1; 4L257; CE24779; NM_069537; WBGene00000419; WP:CE24779 WormBase description: The ced-5 gene a homolog of the human protein DOCK180 that is required for the cell engulfment stage of programmed cell death. WormBase CDS description: DOCK180 protein
Member of lists ( lists):
mount11, R=0.38, stuart layer13, FP
1311 similar in intestine and muscle, FP 1938 Intestine
genes, GD-Chol NSD/AMB, GD-GABA NSD/AMB (Anova/TTest),
GD-Lev Muscle Genes, GD-Musc muscle, GD-U29 muscle
genes, Peter's Acetyl-P001 Superset, Peter's L1 Muscle
Genes (95 Con; 02-01-01), Peter's Neuro (95; 06-18-01),
PJ 1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJRPAPER-Cell Death/Apoptosis,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome IV Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-zLev-Genes,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, programmed
cell death, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG IV [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, YK intestinal genes (p<.001)
C02F4.2 C02F4.2 P W All gene names: cna-1; pph-3; pph2B-A; tax-6; C02F4.2; 4L258; CE07853; CE33593; PP2B; WBGene00006527; WP:CE07853; WP:CE33593 WormBase description: tax-6 encodes an ortholog of calcineurin A that is required for inhibition and adaptation of several sensory neurons and for the normal regulation of egg-laying by serotonin; TAX-6 stimulates transcription of rcn-1, and binds RCN-1 protein if free Ca[2+] is present; in general, calcineurin positively regulates calcium-dependent signaling.
Member of lists ( lists):
mount01, R=0.15, GDPAPER-Prelim Mixed
Muscle, JW SAGE Dauer all, JW SAGE Dauer on Array v1,
Male-enriched, Peter's All Muscle Genes (1 16 01),
Peter's UP-Reg Muscle (10 25 00), PJRPAPER-Chromosome
IV Genes, PJRPAPER-Protein Phosphotases, Protein
phosphatases, Proteome Cell Role (Oct 2000)- Protein
Modificatio, Proteome Cell Role (Oct 2000)- Small
Molecule Tran, Proteome Cell Role (Oct 2000)- Cell
Polarity, Proteome Cell Role (Oct 2000)- Signal
Transduction, Proteome Funct Class (Mar 2000)-Protein
Phosphotas, Proteome Funct Class (Mar 2000)-Hydrolase,
Proteome LG IV [May 2002], Proteome Localization (Oct
2000)-Cytoplasmic, Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
wmyst
C02F4.4 C02F4.4 P W All gene names: C02F4.4; 4L278; CE07855; WBGene00007264; WP:CE07855
Member of lists ( lists):
mount14, R=0.38, GD-Chol NSD/AMB,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, GD-U29-Sp
(wrt L1 95), JW Dauer ANOVA 2430 v4, JW Dauer Recovery
Specific 1984, JW Late 325, Peter's Acetyl-P001
Superset, Peter's Dorsal List (02-19-01), Peter's L1
Muscle Genes (95 Con; 02-01-01), Peter's L1-Dorsal+Excr
avg (99.9), Peter's L2 Muscle (95 Con; 02-01-01), PJ
1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No4 first1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
IV [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes
C02F5.1 C02F5.1 P W All gene names: knl-1; C02F5.1; 3J343; CE02450; NM_066410; WBGene00002231; WP:CE02450 WormBase description: knl-1 encodes a novel acidic protein with a coiled-coil region at its C-terminus; KNL-1 is an essential kinetochore component that is required for proper spindle elongation and chromosome separation, and in the kinetochore assembly pathway, plays a key role in linking the initiation of kinetochore formation with the construction of a functional microtubule-binding interface; in the assembly pathway, KNL-1 functions downstream of the DNA-proximal kinetochore components CeCENP-A/HCP-3 and CeCENP-B/HCP-4 and upstream of the outer kinetochore components HIM-10/Nuf2p, NDC-80/HEC1, CeBUB-1, HCP-1, and CeCLASP2/CLS-2; in expression studies in the one-cell embryo, KNL-1 localizes to kinetochores throughout mitosis.
Member of lists ( lists):
mount05, R=0.22, daf-16 p<.001, 7-01,
PJ 1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No 2 first 1500, PJRPAPER-Chromosome III
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG III [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes
C02F5.3 C02F5.3 P W All gene names: C02F5.3; 3J337; CE36094; WBGene00015346; WP:CE36094 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: GTP-binding protein
Member of lists ( lists):
mount02, R=0.15, Aging p < .01,
GD-Chol "\/", GD-Lev Muscle Genes, GD-Lev-Sp (wrt wt
95), GD-U29 muscle genes, GD-U29-Sp (wrt L1 95),
Peter's Acetyl-P001 Superset, Peter's L2 Muscle (95
Con; 02-01-01), PJ 1235 intestine-sepcific, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R15 First 1500, PJ No10-1-R16 First
1500, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome III
Genes, PJRPAPER-xLEV-specific (wrtWT),
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zLev-Genes,
PJRPAPER-zU29WLev down-up, PJRPAPER-zU29-Genes,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, wmyst
C02F5.4 C02F5.4 P W All gene names: C02F5.4; 3J335; CE38771; WBGene00015347; WP:CE38771
Member of lists ( lists):
mount07, R=0.43, operon first genes,
PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG III [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes, YK genes 95% different in muscle and
intestin
C02F5.5 C02F5.5 P W All gene names: C02F5.5; 3J325; CE00041; WBGene00015348; WP:CE00041
Member of lists ( lists):
1214-L2-99-min, mount04, R=0.41,
age1-216daf2-1384All In age1daf2 modif 703 mi, Art-1-7,
cluster 227 min, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, daf-16 min, FP 1938 Intestine
genes, josh laura1/2 common, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, PJRPAPER-Muslce
(L1) negative controls-2, PJRPAPER-Sperm Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Sperm-enriched,
Valerie Reinke's 11927 genes, YK intestinal genes
(p<.001), YK Similar muscle and intestine genes
C02F5.6 C02F5.6 P W All gene names: C02F5.6; CE00042; CE30417; NM_171212; NM_171213; WBGene00015349; WP:CE00042; WP:CE30417
Member of lists ( lists):
mount02, R=0.15, daf-16 p<.001, 7-01,
FP 645 Intestine specific genes, FP 1938 Intestine
genes, PJ 1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG III [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes, YK genes 95% different in muscle and
intestin
C02F5.7 C02F5.7 P W All gene names: C02F5.7; C02F5.7a.1; C02F5.7a.2; C02F5.7a.3; C02F5.7a.4; C02F5.7b.1; C02F5.7b.2; C30A5.1; CE24780; CE30418; NM_171210; NM_171211; WBGene00015350; WP:CE24780; WP:CE30418 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Member of lists ( lists):
mount06, R=0.21, JW AdjD T0 vs AdjD
T12 short 406, JW Dauer ANOVA 2430 v4, JW Dauer
Enriched AdjT0 vs AdjT12, JW Dauer Recovery Specific
1984, JW Down 540, JW Down Late 162, operon first
genes, PJRPAPER-Chromosome III Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG III
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C03A7.14 C03A7.14 P W All gene names: abu-8; pqn-4; C03A7.14; 5F672; CE07872; NM_071992; WBGene00000031; WP:CE07872 WormBase description: abu-8 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-8 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-8 may help protect the organism from damage by improperly folded nascent protein.
Member of lists ( lists):
mount29, R=0.53, age1-216daf2-1384All
In age1daf2 modif 703 mi, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, PJRPAPER-Chromosome V Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C03A7.4 C03A7.4 P W All gene names: pqn-5; C03A7.4; 5F633; CE07862; NM_071981; WBGene00004099; WP:CE07862 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
Member of lists ( lists):
mount29, R=0.53, GD-Chol "/\", GD-L1
Muscle Genes, GD-L1-Sp (wrt U29 95), GD-WT-Sp (wrt Lev
95), JW 1703 merged Peters zMuscle 8-02, Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, Peter's
ventral muscle-Specific (p<0.05), Peter's
Ventral-Specific L1 (95) list (02-28-01), PJ 836 muscle
and intestine in common, PJ 1005I0.05M0.001, PJ 1445
M0.05I0.001, PJ 1617 Muscle and intestine in common,
PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJRPAPER-1329 L1 Muscle Genes
(Chromo V), PJRPAPER-1329 L1 Muscle List (genes without
1, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V
Genes, PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1
Muscle Genes (1364), PJRPAPER-xWT-specific (wrtLEV),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zU29WLev up-down,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C03A7.7 C03A7.7 P W All gene names: abu-6; pqn-6; C03A7.7; 5F636; CE07865; NM_071982; WBGene00000029; WP:CE07865 WormBase description: abu-6 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-6 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-6 may help protect the organism from damage by improperly folded nascent protein.
Member of lists ( lists):
mount29, R=0.53, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW Late 325,
PJRPAPER-Chromosome V Genes, PJRPAPER-Muscle negative
controls, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C03A7.8 C03A7.8 P W All gene names: abu-7; pqn-7; C03A7.8; 5F638; CE07866; NM_071983; WBGene00000030; WP:CE07866 WormBase description: abu-7 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-7 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-7 may help protect the organism from damage by improperly folded nascent protein.
Member of lists ( lists):
mount29, R=0.53, age1-216daf2-1384All
In age1daf2 modif 703 mi, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, Peter's UP-Reg Muscle (10 25
00), PJRPAPER-Chromosome V Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C03B8.4 C03B8.4 P W All gene names: lin-13; lin-51; C03B8.4; 3I790; CE30419; NM_066277; WBGene00003002; WP:CE30419 WormBase description: Gene Function : lin-13 encodes a large (2248-residue) nuclear protein with multiple zinc fingers of the C2H2 class and a LXCXE retinoblastoma protein-binding motif, that is required for survival through larval development and for negative regulation of vulval fates during postembryonic development. WormBase CDS description: Zinc finger
Member of lists ( lists):
mount05, R=0.22, C. elegans
transcription factors, Male-enriched, Peter's UP-Reg
Muscle (10 25 00), PJRPAPER-Chromosome III Genes,
PJRPAPER-Transcription factors (good list), Proteome
Cell Role (Oct 2000)- Differentiation, Proteome Funct
Class (Mar 2000)-Transcription Fact, Proteome LG III
[May 2002], Proteome Localization (Oct 2000)-Nuclear,
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C03C10.2 C03C10.2 P W All gene names: C03C10.2; 3F181; CE00873; WBGene00007269; WP:CE00873 WormBase description: serine/threonine kinase
Member of lists ( lists):
771-Egg-99-min, mount00, R=0.11,
Peter's All Muscle Genes (1 16 01), PJRPAPER-Casein
Kinases, PJRPAPER-Chromosome III Genes, PJRPAPER-Muslce
(L1) negative controls-2, PJRPAPER-Serine/Threonine
Kinases, Protein kinases, Proteome Cell Role (Oct
2000)- Signal Transduction, Proteome Funct Class (Mar
2000)-Protein Kinase, Proteome LG III [May 2002],
Reinke et al 2004, list of genes in cluster order
C03C10.3 C03C10.3 P W All gene names: rnr-2; C03C10.3; C03C10.3.1; C03C10.3.2; C03C10.3.3; 3F184; CE00874; NM_065420; WBGene00004392; WP:CE00874 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: Ribonuclease-diphosphate reductase M2
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Art-1-7, Biosynthesis, JW Nucleotide Metabolism,
Nucleotide synthesis genes, Oocyte-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes,
PJRPAPER-Nucleotide Metabolism, PJRPAPER-Oocyte Genes,
PJRPAPER-Oxidoreductase, Proteome Cell Role (Oct 2000)-
Nucleotide Synthesi, Proteome Funct Class (Mar
2000)-Oxidoreductases, Proteome LG III [May 2002],
Proteome Localization (Oct 2000)-Cytoplasmic, Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, wmyst
C03C10.4 C03C10.4 P W All gene names: C03C10.4; 3F186; CE00875; WBGene00007270; WP:CE00875
Member of lists ( lists):
mount07, R=0.43, JW Dauer Enriched
AdjT0 vs AdjT12, JW Dauer Enriched by AdjDT0 vs L1T0,
PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG III
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C03C10.6 C03C10.6 P W All gene names: C03C10.6; CE30720; NM_065416; WBGene00007272; WP:CE30720
Member of lists ( lists):
mount01, R=0.15, PJ 4746 intestinal
gene Con95, PJRPAPER-Chromosome III Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
III [May 2002], Ras spe99, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C03C11.1 C03C11.1 P W All gene names: C03C11.1; 1K591; CE07873; WBGene00007274; WP:CE07873
Member of lists ( lists):
mount04, R=0.41, male99,
Male-enriched, PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, PJRPAPER-Male
Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C03C11.2 C03C11.2 P W All gene names: fog-3; C03C11.2; 1K593; CE07874; NM_060245; WBGene00001483; WP:CE07874 WormBase description: fog-3 encodes a protein that has similarity, in its N-terminus, to the vertebrate Tob, BTG1, and BTG2 proteins that function in growth control and/or differentiation; in C. elegans, FOG-3 activity is required in the germ line throughout development for initiation and maintenance of spermatogenesis; fog-3 mRNA is expressed at highest levels in the L3, L4, and young adult stages of development, when spermatogenesis occurs; fog-3 transcription appears to be under the control of TRA-1A, which interacts with predicted TRA-1A binding sites in the fog-3 promoter in vitro.
Member of lists ( lists):
mount04, R=0.41, PJ negative control,
PJRPAPER-Chromosome I Genes, PJRPAPER-Muscle negative
controls, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C03D6.3 C03D6.3 P W All gene names: cel-1; C03D6.3; 1K243; CE05197; CE32300; NM_060168; WBGene00000466; WP:CE05197; WP:CE32300 WormBase description: cel-1 encodes a mRNA capping enzyme, with a N-terminal region with RNA triphosphatase activity and a C-terminal region containing motifs found in yeast and vaccinia virus capping enzyme guanylytransferases; cel-1 is required for embryonic viability, body morphology, and vulval development.
Member of lists ( lists):
1214-L2-99-min, mount05, R=0.22,
Fraser's Complete RNAi List, Fraser's Dpy (02-01-01),
Fraser's Molting Defects (02-01-01), Fraser's
Morphological Defects (02-01-01), general, general cell
funcs, JW SAGE Dauer all, JW SAGE Dauer on Array v1, PJ
4212 IntestineMuscleTtest0.05, PJRPAPER-Chromosome I
Genes, PJRPAPER-Other Phosphotases, PJRPAPER-RNA
Processing, Protein expression, Proteome Cell Role (Oct
2000)- RNA Processing/Modi, Proteome Funct Class (Mar
2000)-Transferase, Proteome Funct Class (Mar
2000)-Other Phosphotases, Proteome LG I [May 2002],
Proteome Localization (Oct 2000)-Nuclear, Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, YK genes 95% different in muscle
and intestin
C03D6.4 C03D6.4 P W All gene names: npp-14; C03D6.4; 1K238; CE05198; CeNup214; NM_060167; WBGene00003800; WP:CE05198 WormBase description: npp-14 is orthologous to the human gene NUCLEOPORIN, 214-KD (NUP214; OMIM:114350), which encodes part of the nucleopore complex mediating nucleocytoplasmic transport; NUP214, as a fusion gene with DEK (OMIM:125264), is found in a subset of acute myeloid leukemia. WormBase CDS description: nucleoporin
Member of lists ( lists):
204 diff min, 684 N2 hs min (L2), 1003
N2 hs min (egg + L2), mount05, R=0.22, stuart layer9,
josh laura2 4/8 common, L2 Hs genes 99.9, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ No4 first1500, PJ No5
first 1500, PJ No 2 first 1500, PJRPAPER-Chromosome I
Genes, PJRPAPER-Nucleus (non-TF, enz, nucleolus),
Proteome Cell Role (Oct 2000)- Nuclear-Cytoplasmic,
Proteome Funct Class (Mar 2000)-Nuclear import/exp,
Proteome LG I [May 2002], Proteome Localization (Oct
2000)-Nuclear, Proteome Localization (Oct 2000)-Nuclear
pore, Reinke et al 2004, list of genes in cluster
order, rosetta, YK genes 95% different in muscle and
intestin
C03D6.5 C03D6.5 P W All gene names: C03D6.5; 1K235; CE36095; WBGene00007277; WP:CE36095 WormBase description: anti-silencing protein
Member of lists ( lists):
771-Egg-99-min, mount07, R=0.43,
Art-1-7, PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG I [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C03D6.6 C03D6.6 P W All gene names: C03D6.6; 1K232; CE15580; WBGene00007278; WP:CE15580
Member of lists ( lists):
mount07, R=0.43, josh laura1/2
common, JW SAGE mixed stage, PJRPAPER-Chromosome I
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order
C03E10.4 C03E10.4 P W All gene names: gly-20; C03E10.4; 5L765; CE26613; GnT II; MGAT2; NM_073463; WBGene00001645; WP:CE26613 WormBase description: gly-20 is orthologous to the human gene MANNOSYL (ALPHA-1,6-)-GLYCOPROTEIN BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE (MGAT2; OMIM:602616), which when mutated leads to carbohydrate-deficient glycoprotein syndrome, type II. WormBase CDS description: UDP-GlcNAc:a-6-D-mannoside b1,2-N-acetylglucosaminyltransferase II
Member of lists ( lists):
mount07, R=0.43, Aging p < .01,
PJRPAPER-Chromosome V Genes, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
C03E10.5 C03E10.5 P W All gene names: C03E10.5; 5L757; CE15585; WBGene00007282; WP:CE15585
Member of lists ( lists):
mount22, R=0.58, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome Funct Class
(Mar 2000)-Small Molecule Bin, Proteome LG V [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C03E10.6 C03E10.6 P W All gene names: C03E10.6; 5L753; CE15586; WBGene00007283; WP:CE15586
Member of lists ( lists):
mount22, R=0.58, Bea lectin, Highly
regulated #2, josh laura1/2 common, PJ No 2 first 1500,
PJRPAPER-Chromosome V Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C03F11.2 C03F11.2 P W All gene names: C03F11.2; CE35379; WBGene00015388; WP:CE35379; XG10
Member of lists ( lists):
mount00, R=0.11, JW SAGE Dauer all,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG X [May 2002], Reinke et al 2004, list of
genes in cluster order
C03F11.3 C03F11.3 P W All gene names: C03F11.3; CE37606; WBGene00015389; WP:CE37606; XG16 WormBase description: glycoprotein
Member of lists ( lists):
Cell Structure, FP 1938 Intestine
genes, PJ 1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome X Genes, Proteome Cell Role
(Oct 2000)- Cell Structure, Proteome LG X [May 2002],
Proteome Localization (Oct 2000)-Unspecified membr,
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK intestinal
genes (p<.001), YK Similar muscle and intestine genes
C03G5.1 C03G5.1 P W All gene names: C03G5.1; C03G5.1.1; C03G5.1.2; CE03917; WBGene00015391; WP:CE03917; XJ162 WormBase description: C03G5.1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA; OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. WormBase CDS description: succinate dehydrogenase flavoprotein subunit
Member of lists ( lists):
mount27, R=0.48, stuart layer7,
stuart layer12, Biosynthesis, Carbohydrate metabolism,
Citric Acid Cycle/Krebs cycle, Energy generation genes,
JW Glyoxylate & Gluconeogenesis, JW TCA, Mitochondrial,
PJRGDPAPER-Yeast Mito (All)-Worm Homologues,
PJRGDPAPER-Yeast Mito (Prokaryotic)-Worm Homo,
PJRPAPER-Carbohydrate Metabolism, PJRPAPER-Chromosome X
Genes, PJRPAPER-Energy Generation,
PJRPAPER-Mitochondrial, PJRPAPER-Oxidoreductase,
Proteome Cell Role (Oct 2000)- Energy Generation,
Proteome Cell Role (Oct 2000)- Carbohydrate Metabo,
Proteome Funct Class (Mar 2000)-Oxidoreductases,
Proteome LG X [May 2002], Proteome Localization (Oct
2000)-Mitochondrial, Proteome Localization (Oct
2000)-Mitochondrial inn, Proteome Subcellular
Localization - Mitochond, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, wmyst
C03G6.19 C03G6.19 P W All gene names: srp-6; C03G6.19; 5H866; CE27579; NM_072489; WBGene00005647; WP:CE27579 WormBase description: srp-6 encodes a functional serpin (serine protease inhibitor) WormBase CDS description: serine protease inhibitor
Member of lists ( lists):
mount08, R=0.21, daf-2 1384 min,
daf-2 1384 InAgingSetMin3ClusterA, Peter's L2 Muscle
(95 Con; 02-01-01), PJ 4212 IntestineMuscleTtest0.05,
PJRPAPER-Chromosome V Genes, PJRPAPER-Protein
Degradation, Proteases, Proteome Cell Role (Oct 2000)-
Protein Degradation, Proteome Funct Class (Mar
2000)-Inhibitor or Repre, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, YK genes 95% different in muscle and intestin
C03H5.1 C03H5.1 P W All gene names: clec-10; C03H5.1; 2A693; CE32109; WBGene00015403; WP:CE32109 WormBase description: 7TM chemoreceptor, clec family
Member of lists ( lists):
mount16, R=0.40, Bea lectin, FP 1938
Intestine genes, JW Climbing 386, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW SAGE mixed
stage, Peter's Dorsal List (02-19-01), Peter's
L1-Dorsal+Excr avg (99.9), PJ 1235 intestine-sepcific,
PJ 2378 IntestineMusclettest0.01, PJ 3085 intestinal
genes, PJ 3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No10-1-R15 First 1500, PJ
No10-1-R16 First 1500, PJRPAPER-Chromosome II Genes,
PJRPAPER-Extracellular (not cell wall or collagen),
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG II [May 2002], Proteome Localization (Oct
2000)-Extracellular (ex, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK intestinal genes (p<.001), YK Similar muscle
and intestine genes
C04B4.2 C04B4.2 P W All gene names: C04B4.2; CE05204; WBGene00007290; WP:CE05204; XM903
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Oocyte-enriched, PJ 4212 IntestineMuscleTtest0.05,
PJRPAPER-Chromosome X Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Oocyte Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
X [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes
C04C11.2 C04C11.2 P W All gene names: C04C11.2; C04C11.2.1; C04C11.2.2; CE05210; WBGene00007296; WP:CE05210; XO655
Member of lists ( lists):
mount01, R=0.15, PJRPAPER-Chromosome
X Genes, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG X [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, YK genes 95% different in muscle
and intestin
C04E12.11 C04E12.11 P W All gene names: C04E12.11; 5D862; CE35220; WBGene00015440; WP:CE35220
Member of lists ( lists):
mount09, R=0.16, Aging p < .01,
GDPAPER-Prelim Mixed Muscle, JW Dauer ANOVA 2430 v4, JW
Dauer Recovery Specific 1984, JW Early 538, Peter's All
Muscle Genes (1 16 01), Peter's L1 Muscle Genes (95
Con; 02-01-01), Peter's L2 Muscle (95 Con; 02-01-01),
Peter's Neuro (95; 06-18-01), Peter's UP-Reg Muscle (10
25 00), PJ 4212 IntestineMuscleTtest0.05, PJ No 2 first
1500, PJRPAPER-Chromosome V Genes, PJRPAPER-L1 Muscle
Genes (95), Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C04E12.12 C04E12.12 P W All gene names: C04E12.12; 5D864; CE39556; WBGene00015441; WP:CE39556
Member of lists ( lists):
Bea ras L2 mixed 561, bea RasL2 486
genes, mount23, R=0.53, stuart layer7, Aging.p01, Bea
Ras L2 time course (99%), FP 1311 similar in intestine
and muscle, GD-Chol "/\", GD-L1 Muscle Genes, GD-L1-Sp
(wrt U29 95), GD-WT-Sp (wrt Lev 95), JW 1703 merged
Peters zMuscle 8-02, Peter's All Muscle Genes (1 16
01), Peter's L1 Muscle Genes (95 Con; 02-01-01), PJ No
2 first 1500, PJRPAPER-1329 L1 Muscle Genes (Chromo V),
PJRPAPER-1329 L1 Muscle List (genes without 1,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-L1 Muscle Genes (unknowns from 1329,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1 Muscle Genes
(1364), PJRPAPER-xWT-specific (wrtLEV),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zU29WLev up-down,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], rasl2, Reinke et al 2004,
list of genes in cluster order, rosetta, YK genes 95%
different in muscle and intestin, YK Similar muscle and
intestine genes
C04E12.4 C04E12.4 P W All gene names: C04E12.4; CE30721; WBGene00015434; WP:CE30721
Member of lists ( lists):
mount08, R=0.21, aging p < .001 (May
2001), Aging p < .01, Aging, p<.001 aging subset,
GD-Chol Down, GD-U29-Sp (wrt Lev 95), GD-U29 muscle
genes, GD-U29-Sp (wrt L1 95), Peter's Acetyl-P001
Superset, Peter's L2 Muscle (95 Con; 02-01-01), PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome V Genes, PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C04E12.6 C04E12.6 P W All gene names: C04E12.6; 5D834; CE16819; WBGene00015436; WP:CE16819
Member of lists ( lists):
mount06, R=0.21, GD-Chol Down,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, JW Dauer
Enriched by AdjDT0 vs L1T0, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome V Genes, PJRPAPER-L1 Muscle Genes
(95), PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
V [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta
C04E12.7 C04E12.7 P W All gene names: C04E12.7; 5D836; CE16820; WBGene00015437; WP:CE16820 WormBase description: C04E12.7 encodes a homolog of human scramblase (PLSCR1; OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis; closely related paralogs of C04E12.7 include T22H2.5 and ZK1053.5.
Member of lists ( lists):
mount09, R=0.16, Aging p < .01, PJ
3085 intestinal genes, PJ 3118 intestinal genes, PJ
4746 intestinal gene Con95, PJ No10-1-R15 First 1500,
PJ No10-1-R16 First 1500, PJRPAPER-Chromosome V Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C04E6.12 C04E6.12 P W All gene names: C04E6.12; 5G400; CE07917; WBGene00015426; WP:CE07917
Member of lists ( lists):
mount14, R=0.38, PJRPAPER-Chromosome
V Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C04E6.5 C04E6.5 P W All gene names: C04E6.5; 5G383; CE27053; WBGene00015422; WP:CE27053
Member of lists ( lists):
mount04, R=0.41, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes,
PJRPAPER-Ubiquitin-Related, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Sperm-enriched, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin
C04F1.1 C04F1.1 P W All gene names: C04F1.1; 1G304; CE17364; WBGene00015442; WP:CE17364
Member of lists ( lists):
Bea ras L2 mixed 561, bea RasL2 486
genes, Bea L2 mixed 709, Bea Ras L2 time course (99%),
GD-Chol "\/", GD-U29-Sp (wrt Lev 95), GD-U29 muscle
genes, GD-U29-Sp (wrt L1 95), JW Dauer ANOVA 2430 v4,
JW Dauer Recovery Specific 1984, JW Late 325, Peter's
Acetyl-P001 Superset, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev down-up, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], rasl2, Reinke et al 2004,
list of genes in cluster order
C04F12.3 C04F12.3 P W All gene names: ikb-1; C04F12.3; 1K263; CE19676; NM_060174; WBGene00002069; WP:CE19676 WormBase description: ikb-1 encodes an ortholog of human BCL3 (OMIM:109560) that physically interacts with the checkpoint protein MRT-2; ikb-1(nr2019) and ikb-1(nr2027) mutants display no obvious phenotype other than shortened lifespan; mutation of BCL3 is frequently associated with recurring translocations found in the neoplastic cells of patients with chronic lymphocytic leukemia, and has been implicated in cell cycle control (perhaps via apoptosis). WormBase CDS description: Ank repeat
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), bea RasL2 486 genes, mount15, R=0.37,
daf-2 1384 min, daf-2 1384 InAgingSetMin3ClusterA, JW
Dauer Enriched AdjT0 vs AdjT12, L2 Hs genes 99.9,
Peter's L1 Muscle Genes (95 Con; 02-01-01),
PJRPAPER-Chromosome I Genes, PJRPAPER-L1 Muscle Genes
(95), Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG I [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta
C04F12.4 C04F12.4 P W All gene names: rpl-14; C04F12.4; C04F12.4.1; C04F12.4.2; 1K265; CE19677; NM_060175; WBGene00004426; WP:CE19677 WormBase description: rpl-14 encodes a large ribosomal subunit L14 protein.
Member of lists ( lists):
1214-L2-99-min, mount23, R=0.53,
stuart layer12, Aging.p01, Bea L2 mixed 709, Bea Ras L2
time course (99%), daf-16 (p < .001), daf-16 p<.001,
7-01, FP 1311 similar in intestine and muscle, FP 1938
Intestine genes, Fraser's 100% Emb (02-01-01), Fraser's
Complete RNAi List, Fraser's Slow Growth (02-01-01),
Fraser's Sterile (02-01-01), GD-Chol Down, GD-L1 Muscle
Genes, GD-L1-Sp (95 TTest), GD-L2 Muscle Genes, GD-The
Worm-Yeast in common with Muscle, GD-U29 muscle genes,
GD-U29-Sp (wrt Lev 95), GD-WT-Sp (wrt Lev 95),
GDPAPER-Prelim Mixed Muscle, JW 1703 merged Peters
zMuscle 8-02, Neuro-1 L1 Upreg (11 20 00), Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's Dorsal List (02-19-01), Peter's L1 Muscle
Genes (95 Con; 02-01-01), Peter's L1-Dorsal+Excr avg
(99.9), Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, Peter's
UP-Reg Muscle (10 25 00), PJ 836 muscle and intestine
in common, PJ 1005I0.05M0.001, PJ 1445 M0.05I0.001, PJ
1617 Muscle and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No8 First 1500, PJ
No10-1-R16 First 1500, PJ No10-1-R15 First 1500,
PJRPAPER-1329 L1 Muscle Genes (Chromo I), PJRPAPER-1329
L1 Muscle List (genes without 1, PJRPAPER-Cholin
Superset, PJRPAPER-Chromosome I Genes, PJRPAPER-L1
Muscle Genes (95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-Ribosome Component, PJRPAPER-xWT-specific
(wrtLEV), PJRPAPER-zL1 Muscle Genes, PJRPAPER-zL1vL2
nsd, PJRPAPER-zL2 Muscle Genes, PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Protein expression, Proteome Cell
Role (Oct 2000)- Protein Synthesis, Proteome Funct
Class (Mar 2000)-RNA-Binding Subuni, Proteome LG I [May
2002], Proteome Localization (Oct 2000)-Cytoplasmic,
Proteomes Ribosomal List, rasl2, Reinke et al 2004,
list of genes in cluster order, RNA binding, wmyst, YK
intestinal genes (p<.001), YK Similar muscle and
intestine genes
C04F12.5 C04F12.5 P W All gene names: C04F12.5; 1K264; CE19678; WBGene00007299; WP:CE19678
Member of lists ( lists):
mount07, R=0.43, JW SAGE mixed stage,
Peter's Neuro (95; 06-18-01), Peter's Neuro (99;
06-18-01), Peter's Neuro (99.9; 06-18-01), Peter's
Neuro-non-musc(sp&enri;fr99.9 Superset), PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, PJRPAPER-Secretory
Vesicles, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG I [May 2002], Reinke et al
2004, list of genes in cluster order, YK genes 95%
different in muscle and intestin
C04F12.6 C04F12.6 P W All gene names: C04F12.6; 1K266; CE19679; WBGene00007300; WP:CE19679
Member of lists ( lists):
Proteome Cell Role (Oct 2000)- Genes
of Unknown Ce, Proteome LG I [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta
C04F12.7 C04F12.7 P W All gene names: C04F12.7; 1K272; CE19680; WBGene00007301; WP:CE19680
Member of lists ( lists):
mount04, R=0.41, FP 645 Intestine
specific genes, FP 1311 similar in intestine and
muscle, FP 1938 Intestine genes, josh laura1/2 common,
Neuro-1 L1 Upreg (11 20 00), Peter's L1 Muscle Genes
(95 Con; 02-01-01), PJ 1899
IntestineMuscleCon95incommon, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, PJRPAPER-L1 Muscle
Genes (95), PJRPAPER-Sperm Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG I [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Sperm-enriched, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin,
YK intestinal genes (p<.001), YK intestine-specific
genes
C04F5.1 C04F5.1 P W All gene names: rsd-8; sid-1; C04F5.1; 5F603; CE30331; NM_071971; WBGene00004795; WP:CE30331 WormBase description: The sid-1 gene encodes a predicted transmembrane protein with conserved human (OMIM:606816) and mouse homologs of unknown function and is required cell autonomously for systemic RNA interference (RNAi); a SID-1::GFP fusion is enriched at the cell periphery of most nonneuronal cells from late embryogenesis through adulthood with highest levels detected in cells exposed to the environment.
Member of lists ( lists):
1214-L2-99-min, mount07, R=0.43,
stuart layer13, Art-1-7, GD-Chol NSD/AMB, GD-GABA
NSD/AMB (Anova/TTest), GD-Musc muscle, GD-U29-Sp (wrt
Lev 95), GD-U29 muscle genes, josh laura1/2 common,
Peter's Acetyl-P001 Superset, Peter's Neuro (95;
06-18-01), PJ No8 First 1500, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome V Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-zU29WLev nsd,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG V [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
C04F5.7 C04F5.7 P W All gene names: ugt-63; C04F5.7; 5F584; CE19671; WBGene00015449; WP:CE19671 WormBase description: 7TM chemoreceptor, ugt family
Member of lists ( lists):
771-Egg-99-min, Bea
UDP-glucuronosyltransferase, JW Dauer ANOVA 2430 v4, JW
Dauer Recovery Specific 1984, JW Early 538, JW
UDP-glucoronosyltransferase, Lipid metabolism genes, PJ
4746 intestinal gene Con95, PJ No 2 first 1500,
PJRPAPER-Chromosome V Genes, PJRPAPER-Lipid, fatty-acid
and sterol metabolism, Proteome Cell Role (Oct 2000)-
Lipid, Sterol & Fat, Proteome Funct Class (Mar
2000)-Transferase, Proteome LG V [May 2002], Reinke et
al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C04F6.3 C04F6.3 P W All gene names: cht-1; C04F6.3; C04F6.3.1; C04F6.3.2; CE03923; CHT1; NM_076187; WBGene00000503; WP:CE03923; XE16 WormBase description: cht-1 encodes a chitinase orthologous to human chitinase-1 (OMIM:600031, mutations are associated with chitotriosidase deficiency); CHT-1 is predicted to function as an extracellular O-glycosyl hydrolase that hydrolyzes the glycosidic bond between two or more carbohydrates; in C. elegans, CHT-1 may play a role in embryogenesis, and may also be required for cuticle degradation during molting and degradation of chitin-containing pathogens as part of a host defense mechanism. WormBase CDS description: glycosyl hydrolase (family 18)
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), Bea ras L2 mixed 561, bea RasL2 486
genes, mount12, R=0.29, aging p < .001 (May 2001),
Aging p < .01, Aging, p<.001 aging subset, Bea Ras L2
time course (99%), FP 464 Muscle specific genes,
GD-Chol UP, GD-L1 Muscle Genes, GD-L1-Sp (95 TTest),
GD-L1-Sp (wrt U29 95), GD-Lev Muscle Genes, GD-Lev-Sp
(wrt U29 95), JW 1703 merged Peters zMuscle 8-02, JW
SAGE mixed stage, L2 Hs genes 99.9, Neuro-1 L1 Upreg
(11 20 00), Peter's Acetyl-P001 Superset, Peter's All
Muscle Genes (1 16 01), Peter's L1 Muscle Genes (95
Con; 02-01-01), Peter's Lev UP unc-29 DOWN (anova+10),
Peter's Musc-non-neuro(sp&enri;fr99.9 Superset), Peters
L1-Specific, PJ 82 Muscle-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-1329 L1 Muscle List
(genes without 1, PJRPAPER-1329 L1 Muscle Genes (Chromo
X), PJRPAPER-Cholin Superset, PJRPAPER-Chromosome X
Genes, PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1
Muscle Genes (1364), PJRPAPER-Muslce (L1) negative
controls-2, PJRPAPER-xWT-specific (wrtU29),
PJRPAPER-zL1 Muscle Genes, PJRPAPER-zL1-Specific Genes,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev up, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
X [May 2002], rasl2, Reinke et al 2004, list of genes
in cluster order, rosetta, YK genes 95% different in
muscle and intestin, YK muscle-specific genes
C04G2.10 C04G2.10 P W All gene names: C04G2.10; 4K881; CE05218; WBGene00007309; WP:CE05218
Member of lists ( lists):
mount04, R=0.41, josh laura1/2
common, PJ No 2 first 1500, PJRPAPER-Chromosome IV
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C04G2.2 C04G2.2 P W All gene names: C04G2.2; 4K855; CE05212; WBGene00007305; WP:CE05212 WormBase description: serine/threonine kinase
Member of lists ( lists):
mount04, R=0.41, Aging p < .01,
Aging.p01, GDPAPER-Prelim Mixed Muscle, male99,
Male-enriched, Peter's All Muscle Genes (1 16 01), PJ
4746 intestinal gene Con95, PJRPAPER-Casein Kinases,
PJRPAPER-Chromosome IV Genes, PJRPAPER-Male Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Serine/Threonine Kinases, PJRPAPER-Sperm
Genes, Protein kinases, Proteome Cell Role (Oct 2000)-
Signal Transduction, Proteome Funct Class (Mar
2000)-Protein Kinase, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C04G2.4 C04G2.4 P W All gene names: msp-36; C04G2.4; 4K861; NM_069433; WBGene00003432 WormBase description: msp-36 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family comprises of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSP is involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSP assembles into fibrous networks that drives movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. WormBase CDS description: major sperm protein
Member of lists ( lists):
771-Egg-99-min, mount04, R=0.41, Cell
Structure, Highly regulated #2, josh laura1/2 common,
male99, Male-enriched, MSP genes, PJ 3085 intestinal
genes, PJ 3118 intestinal genes, PJ 4746 intestinal
gene Con95, PJ No8 First 1500, PJ No10-1-R15 First
1500, PJ No10-1-R16 First 1500, PJRPAPER-Chromosome IV
Genes, PJRPAPER-Male Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Cell Structure, Proteome Funct Class (Mar
2000)-Structural Protein, Proteome LG IV [May 2002],
Proteome Localization (Oct 2000)-Cytoplasmic, Reinke et
al 2004, list of genes in cluster order
C04G2.5 C04G2.5 P W All gene names: C04G2.5; 4K858; CE05213; WBGene00007306; WP:CE05213
Member of lists ( lists):
mount04, R=0.41, Art-1-7, male99,
Male-enriched, PJ No5 first 1500, PJRPAPER-Chromosome
IV Genes, PJRPAPER-Male Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
IV [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes
C04G2.9 C04G2.9 P W All gene names: C04G2.9; 4K879; CE05217; WBGene00007308; WP:CE05217
Member of lists ( lists):
mount04, R=0.41, josh laura1/2
common, male99, Male-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R15 First 1500, PJ No10-1-R16 First
1500, PJRPAPER-Chromosome IV Genes, PJRPAPER-Male
Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C04H5.1 C04H5.1 P W All gene names: C04H5.1; 2O821; CE15587; WBGene00007312; WP:CE15587
Member of lists ( lists):
mount02, R=0.15, stuart layer13,
GD-GABA NSD/AMB (Anova/TTest), GD-Musc muscle, GD-U25
muscle, Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's Muscle-Neuro Ubiq (99.9 Superset list), Peter's
Neuro (95; 06-18-01), Peter's Neuro (99; 06-18-01),
Peter's Neuro (99.9; 06-18-01), PJRPAPER-Chromosome II
Genes, PJRPAPER-L1 Muscle Genes (95), Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG II
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C05A9.1 C05A9.1 P W All gene names: pgp-5; C05A9.1; CE05221; NM_077409; WBGene00003999; WP:CE05221; XL474 WormBase description: pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins; however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. WormBase CDS description: p-glycoprotein
Member of lists ( lists):
771-Egg-99-min, mount21, R=0.30,
ATPases, PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome X Genes,
PJRPAPER-Mutidrug Resistance, Proteome Cell Role (Oct
2000)- Small Molecule Tran, Proteome Funct Class (Mar
2000)-Active Transporter, Proteome Funct Class (Mar
2000)-Transporter, Proteome Funct Class (Mar
2000)-ATPase, Proteome Funct Class (Mar
2000)-Hydrolase, Proteome LG X [May 2002], Proteome
Localization (Oct 2000)-Unspecified membr, Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, wmyst, YK genes 95% different in
muscle and intestin
C05B10.1 C05B10.1 P W All gene names: lip-1; C05B10.1; 4H607; CE31151; NM_068652; WBGene00003043; WP:CE31151 WormBase description: protein-tyrosine phosphatase
Member of lists ( lists):
mount11, R=0.38, GD-Chol NSD/AMB,
GD-U29 muscle genes, GD-U29-Sp (wrt L1 95),
Oocyte-enriched, Peter's Acetyl-P001 Superset, Peter's
L2 Muscle (95 Con; 02-01-01), PJ 4212
IntestineMuscleTtest0.05, PJ No 2 first 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Oocyte Genes, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Protein
phosphatases, Proteome Cell Role (Oct 2000)- Protein
Modificatio, Proteome Funct Class (Mar 2000)-Protein
Phosphotas, Proteome Funct Class (Mar 2000)-Hydrolase,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C05B5.2 C05B5.2 P W All gene names: C05B5.2; 3L90; CE00878; WBGene00007320; WP:CE00878
Member of lists ( lists):
mount04, R=0.41, age-1 216 min, age-1
216InAgingSetMin3ClusterC, josh laura1/2 common, JW
SAGE mixed stage, PJ 1158IntestineMuscleTTEST0.001, PJ
1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R15 First 1500, PJ No10-1-R16 First
1500, PJ No 2 first 1500, PJRPAPER-Chromosome III
Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG III [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C05C10.4 C05C10.4 P W All gene names: C05C10.4; 2K223; CE17370; WBGene00007331; WP:CE17370 WormBase description: acid phosphatase
Member of lists ( lists):
mount08, R=0.21, age1-216daf2-1384All
In age1daf2 modif 703 mi, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, daf-16 min, GDPAPER-Prelim
Mixed Muscle, Highly regulated #2, josh laura1/2
common, McElwee 35, Peter's All Muscle Genes (1 16 01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's UP-Reg
Muscle (10 25 00), PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome II Genes, PJRPAPER-Other
Phosphotases, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome Funct Class (Mar 2000)-Hydrolase,
Proteome Funct Class (Mar 2000)-Other Phosphotases,
Proteome LG II [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C05C10.5 C05C10.5 P W All gene names: C05C10.5; C05C10.5c.1; C05C10.5c.2; C05C10.5c.3; 2K235; CE01469; CE35822; CE39217; WBGene00007332; WP:CE01469; WP:CE35822; WP:CE39217
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Aging.p01, Germ line-enriched, JW SAGE mixed stage,
operon first genes, PJ 1158IntestineMuscleTTEST0.001,
PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome II Genes, PJRPAPER-Muslce
(L1) negative controls-2, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C05C12.1 C05C12.1 P W All gene names: C05C12.1; 4M19; CE02965; WBGene00007335; WP:CE02965 WormBase description: serine/threonine kinase
Member of lists ( lists):
mount04, R=0.41, JW SAGE mixed stage,
male99, Male-enriched, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4746 intestinal gene Con95,
Protein kinases, Proteome Cell Role (Oct 2000)- Protein
Modificatio, Proteome Cell Role (Oct 2000)- Signal
Transduction, Proteome Funct Class (Mar
2000)-Transferase, Proteome Funct Class (Mar
2000)-Protein Kinase, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C05C12.4 C05C12.4 P W All gene names: C05C12.4; 4M12; CE39218; WBGene00007336; WP:CE39218
Member of lists ( lists):
mount08, R=0.21, FP 1938 Intestine
genes, GD-Chol "\/", GD-U29 muscle genes, GD-U29-Sp
(wrt Lev 95), GD-U29-Sp (wrt L1 95), josh laura1/2
common, Peter's Acetyl-P001 Superset, Peter's Dorsal
List (02-19-01), Peter's Excretory-Specific (p<0.05),
Peter's Excretory-SPecific med rank (95), Peter's
L1-Dorsal+Excr avg (99.9), Peter's L2 Muscle (95 Con;
02-01-01), PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome IV Genes, PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zU29WLev down-up,
PJRPAPER-zU29-Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK intestinal genes
(p<.001), YK Similar muscle and intestine genes
C05C12.5 C05C12.5 P W All gene names: C05C12.5; 4M24; CE02968; WBGene00007337; WP:CE02968
Member of lists ( lists):
mount04, R=0.41, Aging p < .01,
Aging.p01, josh laura1/2 common, male99, Male-enriched,
PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, PJRPAPER-Male
Genes, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C05C8.1 C05C8.1 P W All gene names: C05C8.1; 5H721; CE29480; WBGene00015460; WP:CE29480
Member of lists ( lists):
operon first genes, Proteome LG V [May
2002], Reinke et al 2004, list of genes in cluster
order
C05C8.3 C05C8.3 P W All gene names: dao-1; fkb-3; C05C8.3; 5H707; CE07921; NM_072434; WBGene00001428; WP:CE07921 WormBase description: fkb-3 encodes a peptidylprolyl cis/trans isomerase homologous to mammalian FK506 immunosuppressant-binding protein 9; FKB-3 expression is positively regulated by signaling through the DAF-2 insulin receptor-like pathway and the activity of the DAF-16 fork-head transcription factor suggesting that FKB-3 could play a role in metabolism and longevity; however, as loss of FKB-3 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of FKB-3 in C. elegans development and/or behavior is not yet known; FKB-3 contains a predicted endoplasmic reticulum (ER) retention sequence and is thus proposed to localize to the ER. WormBase CDS description: FKBP-binding protein
Member of lists ( lists):
mount14, R=0.38, daf-2 1384 min,
daf-2 1384 InAgingSetMin3ClusterA, JW Climbing 386, JW
Dauer ANOVA 2430 v4, JW Dauer Recovery Specific 1984,
Peter's Dorsal List (02-19-01), Peter's L1-Dorsal+Excr
avg (99.9), PJ 3085 intestinal genes, PJ 3118
intestinal genes, PJ 4746 intestinal gene Con95, PJ No4
first1500, PJ No10-1-R15 First 1500, PJ No10-1-R16
First 1500, PJRPAPER-Chromosome V Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome Funct
Class (Mar 2000)-Isomerase, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C05C8.4 C05C8.4 P W All gene names: gei-6; C05C8.4; 5H708; CE07922; NM_072435; WBGene00001563; WP:CE07922
Member of lists ( lists):
mount09, R=0.16, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C05C8.5 C05C8.5 P W All gene names: C05C8.5; 5H714; CE07923; WBGene00015462; WP:CE07923
Member of lists ( lists):
mount02, R=0.15, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C05C8.6 C05C8.6 P W All gene names: C05C8.6; 5H716; CE07924; WBGene00015463; WP:CE07924
Member of lists ( lists):
mount07, R=0.43, Art-1-7, Germ
line-enriched, josh laura1/2 common, operon first
genes, PJ 1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG V [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C05C8.7 C05C8.7 P W All gene names: phi-49; C05C8.7; C05C8.7.1; C05C8.7.2; C05C8.7.3; C05C8.7.4; 5H724; CE07925; WBGene00015464; WP:CE07925 WormBase description: mannose-6-phosphate isomerase
Member of lists ( lists):
mount24, R=0.37, stuart layer12, Bea
L2 mixed 709, Biosynthesis, Carbohydrate metabolism,
GD-Chol NSD/AMB, GD-U29 muscle genes, GD-U29-Sp (wrt L1
95), JW Climbing 386, JW Dauer ANOVA 2430 v4, JW Dauer
Recovery Specific 1984, Peter's Acetyl-P001 Superset,
Peter's Dorsal List (02-19-01), Peter's
Excretory-Specific (p<0.05), Peter's L1-Dorsal+Excr avg
(99.9), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's Neuro (95; 06-18-01), Peter's Neuro (99;
06-18-01), PJRPAPER-Carbohydrate Metabolism,
PJRPAPER-Carbohydrate Metabolism (no mito gen,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Carbohydrate Metabo,
Proteome Funct Class (Mar 2000)-Isomerase, Proteome LG
V [May 2002], Proteome Localization (Oct
2000)-Cytoplasmic, Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
wmyst
C05C9.1 C05C9.1 P W All gene names: C05C9.1; CE33968; WBGene00007325; WP:CE33968; XL779 WormBase description: LBP / BPI / CETP family
Member of lists ( lists):
mount14, R=0.38, age1-216daf2-1384All
In age1daf2 modif 703 mi, age-1
216InAgingSetMin3ClusterD, age-1 216 min,
PJRPAPER-Chromosome X Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG X [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
C05D11.2 C05D11.2 P W All gene names: tag-171; vps-16; C05D11.2; C05D11.2.1; C05D11.2.2; 3H525; CE24785; WBGene00006516; WP:CE24785
Member of lists ( lists):
771-Egg-99-min, mount02, R=0.15, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG III [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes, YK genes 95% different in muscle and
intestin
C05D11.3 C05D11.3 P W All gene names: tag-170; C05D11.3; 3H521; CE01133; WBGene00006515; WBGene00015482; WP:CE01133
Member of lists ( lists):
mount18, R=0.38, stuart layer13,
daf-16 p<.001, 7-01, daf-16 (p < .001), FP 1938
Intestine genes, GD-Chol Down, GD-GABA NSD/AMB
(Anova/TTest), GD-L2 Muscle Genes, GD-U25 muscle,
GD-U29 muscle genes, GD-U29-Sp (wrt Lev 95), JW 1703
merged Peters zMuscle 8-02, operon first genes, Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Neuro (95; 06-18-01), Peter's Neuro (99; 06-18-01), PJ
4746 intestinal gene Con95, PJ No10-1-R16 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome III
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes,
PJRPAPERz-L2 Clustered (inc Operons not Paral,
PJRPAPERz-L2 Clustered(without Paralogues wit, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
III [May 2002], Reinke et al 2004, list of genes in
cluster order, YK intestinal genes (p<.001)
C05D11.6 C05D11.6 P W All gene names: nas-4; C05D11.6; 3H498; CE37080; NM_066004; WBGene00003523; WP:CE37080 WormBase description: nas-4 encodes a predicted extracellular matrix metalloprotease of the M12A (astacin) family that contains an N-terminal signal sequence and a catalytic domain, but no recognizable regulatory domains in the C-terminus; as loss of nas-4 activity via RNAi results in no obvious abnormalities, the precise role of NAS-4 in C. elegans development and/or behavior is not yet known; however, an NAS-4 translational reporter is expressed in the pharynx and intestine in larvae and adults, suggesting a role for NAS-4 in digestion; NAS-4 is specifically detected within cells of the pharyngeal procorpus, metacorpus, isthmus, and terminal bulb, with extracellular expression detected in the lumen of the terminal bulb and in the gut. WormBase CDS description: zinc metalloprotease
Member of lists ( lists):
mount14, R=0.38, GD-Chol "\/", GD-Lev
Muscle Genes, GD-Lev-Sp (wrt wt 95), JW Dauer ANOVA
2430 v4, JW Dauer Recovery Specific 1984, JW Late 325,
Peter's Acetyl-P001 Superset, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-xLEV-specific (wrtWT),
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev down-up,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C05D11.7 C05D11.7 P W All gene names: C05D11.7; C05D11.7a.1; C05D11.7a.2; 3H506; CE29663; CE30480; WBGene00015484; WP:CE29663; WP:CE30480
Member of lists ( lists):
mount05, R=0.22, JW Dauer Enriched
AdjT0 vs AdjT12, Peter's L1 Muscle Genes (95 Con;
02-01-01), PJRPAPER-Chromosome III Genes, PJRPAPER-L1
Muscle Genes (95), Proteome Cell Role (Oct 2000)- Genes
of Unknown Ce, Proteome LG III [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C05D12.1 C05D12.1 P W All gene names: C05D12.1; 2L702; CE36973; WBGene00007339; WP:CE36973
Member of lists ( lists):
mount01, R=0.15, PJRPAPER-Chromosome
II Genes, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG II [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C05D2.3 C05D2.3 P W All gene names: C05D2.3; 3G707; CE29022; WBGene00015467; WP:CE29022 WormBase description: C05D2.3 generally resembles aromatic-L-amino-acid/L-histidine decarboxylases; however, its predicted protein sequence lacks six residues critical for AADC function; C05D2.3 is dispensable in mass RNAi assays. WormBase CDS description: aromatic-L-amino-acid decarboxylase
Member of lists ( lists):
mount04, R=0.41, Amino acid
metabolism genes, Biosynthesis, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Amino Acid Metabolism,
PJRPAPER-Chromosome III Genes, PJRPAPER-Muscle negative
controls, PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Amino Acid Metaboli, Proteome Funct Class (Mar
2000)-Lyase, Proteome LG III [May 2002], Proteome
Localization (Oct 2000)-Cytoplasmic, Reinke et al 2004,
list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C05D2.4 C05D2.4 P W All gene names: bas-1; C05D2.4; 3G703; CE01141; CE37081; WBGene00000239; WP:CE01141; WP:CE37081 WormBase description: bas-1 encodes a serotonin- and dopamine-synthetic aromatic amino acid decarboxylase (AAADC) that is required for the synthesis of serotonin from 5-hydroxytryptophan in vivo; mutations of bas-1 impair the turning step in male mating, the migration of AVM, SDQR, ALM, and BDU neurons during development. WormBase CDS description: aromatic-L-amino-acid decarboxylase
Member of lists ( lists):
703 InParaquatMin 109, 1214-L2-99-min,
mount09, R=0.16, age1-216daf2-1384All In age1daf2
modif 703 mi, Amino acid metabolism genes,
Biosynthesis, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterA, FP 645 Intestine specific
genes, FP 1938 Intestine genes, GDPAPER-Prelim Mixed
Muscle, JW Common Kinetics 446 v3, JW Dauer ANOVA 2430
v4, JW SAGE mixed stage, Peter's All Muscle Genes (1 16
01), Peter's UP-Reg Muscle (10 25 00), PJRPAPER-Amino
Acid Metabolism, PJRPAPER-Chromosome III Genes,
Proteome Cell Role (Oct 2000)- Amino Acid Metaboli,
Proteome Funct Class (Mar 2000)-Lyase, Proteome LG III
[May 2002], Proteome Localization (Oct
2000)-Cytoplasmic, Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin, YK
intestinal genes (p<.001), YK intestine-specific genes
C05D2.5 C05D2.5 P W All gene names: gak-1; C05D2.5; 3G695; CE26863; NM_065806; WBGene00001514; WP:CE26863 WormBase description: gak-1 encodes a protein that contains an AT hook motif, a DNA-binding domain that shows a preference for binding stretches of A/T base pairs; GAK-1 appears to play a role in meiotic chromosome segregation, as overexpression results in post-prophase I chromosome segregation abnormalities, and a corresponding increase in embryonic lethality and the proportion of genotypically XO males in an otherwise self-fertile, XX hermaphrodite population; loss of gak-1 function via RNA-mediated interference (RNAi) results in sterility in the injected hermaphrodites, suggesting a possible role in germline development as well; gak-1 expression is enhanced in the germline, although its precise subcellular localization has not been reported.
Member of lists ( lists):
1214-L2-99-min, mount07, R=0.43,
stuart layer13, Art-1-7, Germ line-enriched, josh
laura1/2 common, JW Dauer Enriched by AdjDT0 vs L1T0,
Meiosis, PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No10-1-R16 First 1500, PJRPAPER-Chromosome
III Genes, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG III [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C05E11.5 C05E11.5 P W All gene names: amt-4; C05E11.5; CE27655; NM_076382; WBGene00000136; WP:CE27655; XF187 WormBase description: amt-4 encodes a member of the ammonium transporter protein family. WormBase CDS description: ammonium transporter
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), JW Dauer ANOVA 2430 v4, JW Dauer Recovery
Specific 1984, JW Early 538, L2 Hs genes 99.9, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome X Genes,
Proteome Cell Role (Oct 2000)- Small Molecule Tran,
Proteome Funct Class (Mar 2000)-Active Transporter,
Proteome Funct Class (Mar 2000)-Transporter, Proteome
LG X [May 2002], Proteome Localization (Oct
2000)-Unspecified membr, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, wmyst, YK genes 95% different in muscle and
intestin
C05E11.7 C05E11.7 P W All gene names: C05E11.7; CE03937; WBGene00015496; WP:CE03937; XF198
Member of lists ( lists):
mount00, R=0.11, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG X [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C05E4.1 C05E4.1 P W All gene names: pes-21; C05E4.1; 5B243; CE07935; NM_070917; WBGene00005643; WP:CE07935 WormBase description: srp-2 encodes an ovalbumin-like serpin (ov-serpin) member of the serine protease inhibitor superfamily that is orthologous to human NEUROSERPIN (OMIM:602445, mutated in familial encephalopathy with neuroserpin inclusion bodies); SRP-2 is predicted to function as a suicide substrate that inhibits the proteolytic activity of serine proteases, and in vitro, recombinant SRP-2 is able to inhibit granzyme B activity; however, as loss of srp-2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of SRP-2 in C. elegans development and/or behavior is not yet known; srp-2 expression is detected in hypodermal cells, particularly in the lateral seam cells. WormBase CDS description: serine protease inhibitor
Member of lists ( lists):
771-Egg-99-min, mount08, R=0.21, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No 2 first 1500, PJRPAPER-Chromosome V Genes,
PJRPAPER-Protein Degradation, Proteases, Proteome Cell
Role (Oct 2000)- Protein Degradation, Proteome Funct
Class (Mar 2000)-Inhibitor or Repre, Proteome LG V [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C06A1.1 C06A1.1 P W All gene names: cdc-48.1; phi-31; C06A1.1; 2K850; CE02114; NM_063872; WBGene00007352; WP:CE02114 WormBase description: transitional endoplasmic reticulum ATPase homolog 1 (P97 protein)
Member of lists ( lists):
stuart layer9, ATPases, Cell cycle
genes, Peter's UP-Reg Muscle (10 25 00), PJRPAPER-Cell
Cycle Genes, PJRPAPER-Chromosome II Genes,
PJRPAPER-Protein Degradation, Protein expression,
Proteome Cell Role (Oct 2000)- Protein Degradation,
Proteome Cell Role (Oct 2000)- Cell Cycle Control,
Proteome Funct Class (Mar 2000)-Proteosome Subunit,
Proteome Funct Class (Mar 2000)-ATPase, Proteome Funct
Class (Mar 2000)-Hydrolase, Proteome LG II [May 2002],
Proteome Localization (Oct 2000)-Nuclear, Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, wmyst
C06A1.3 C06A1.3 P W All gene names: C06A1.3; 2K863; CE02116; WBGene00007354; WP:CE02116 WormBase description: serine/threonine protein phosphatase
Member of lists ( lists):
771-Egg-99-min, mount04, R=0.41,
male99, Male-enriched, PJ 4746 intestinal gene Con95,
PJRPAPER-Chromosome II Genes, PJRPAPER-Male Genes,
PJRPAPER-Protein Phosphotases, PJRPAPER-Sperm Genes,
Protein phosphatases, Proteome Cell Role (Oct 2000)-
Protein Modificatio, Proteome Funct Class (Mar
2000)-Protein Phosphotas, Proteome Funct Class (Mar
2000)-Hydrolase, Proteome LG II [May 2002], Reinke et
al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes, wmyst
C06A1.4 C06A1.4 P W All gene names: C06A1.4; 2K866; WBGene00014667
Member of lists ( lists):
Proteome LG II [May 2002], Reinke et
al 2004, list of genes in cluster order
C06A5.1 C06A5.1 P W All gene names: C06A5.1; 1G597; CE07948; WBGene00015499; WP:CE07948
Member of lists ( lists):
mount11, R=0.38, Fraser's 100% Emb
(02-01-01), Fraser's Complete RNAi List, Fraser's
Morphological Defects (02-01-01), Fraser's Pvl
(02-01-01), operon first genes, Peter's Neuro (95;
06-18-01), Peter's Neuro (99; 06-18-01), Peter's Neuro
(99.9; 06-18-01), Peter's Neuro-non-musc(sp&enri;fr99.9
Superset), PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce
(L1) negative controls-2, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG I [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C06A5.10 C06A5.10 P W All gene names: C06A5.10; CE07957; WBGene00015506; WP:CE07957
Member of lists ( lists):
Proteome Cell Role (Oct 2000)- Genes
of Unknown Ce, Proteome LG I [May 2002], Reinke et al
2004, list of genes in cluster order
C06A5.6 C06A5.6 P W All gene names: C06A5.6; 1G560; CE07953; WBGene00015504; WP:CE07953
Member of lists ( lists):
mount07, R=0.43, Art-1-7, josh
laura1/2 common, PJ 2378 IntestineMusclettest0.01, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome I Genes, PJRPAPER-Muslce
(L1) negative controls-2, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG I [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C06A5.8 C06A5.8 P W All gene names: C06A5.8; 1G584; CE07955; CE33360; WBGene00015505; WP:CE07955; WP:CE33360
Member of lists ( lists):
mount07, R=0.43, Art-1-7, josh
laura1/2 common, JW SAGE mixed stage, Peter's L1 Muscle
Genes (95 Con; 02-01-01), PJRPAPER-Chromosome I Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG I [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
C06A5.9 C06A5.9 P W All gene names: rnf-1; tag-54; C06A5.9; 1G586; CE34249; NM_059337; WBGene00004380; WP:CE34249
Member of lists ( lists):
mount07, R=0.43, Art-1-7, josh
laura1/2 common, PJRPAPER-Chromosome I Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG I
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C06A6.3 C06A6.3 P W All gene names: C06A6.3; 4I599; CE03941; WBGene00015508; WP:CE03941
Member of lists ( lists):
mount11, R=0.38, GD-Chol Down,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, Peter's
Acetyl-P001 Superset, Peter's L1 Muscle Genes (95 Con;
02-01-01), PJ No5 first 1500, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome IV Genes, PJRPAPER-L1 Muscle Genes
(95), PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C06A6.5 C06A6.5 P W All gene names: C06A6.5; 4I598; CE27661; WBGene00015510; WP:CE27661
Member of lists ( lists):
mount14, R=0.38, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C06A8.1 C06A8.1 P W All gene names: C06A8.1; C06A8.1a.1; C06A8.1a.2; 2I64; CE30593; CE31291; WBGene00015512; WP:CE30593; WP:CE31291 WormBase description: C06A8.1 is orthologous to human MSH HOMEO BOX HOMOLOG 1 (MTHFR; OMIM:142983, mutated in homocystinuria).
Member of lists ( lists):
mount05, R=0.22, Amino acid
metabolism genes, Biosynthesis, JW AdjD T0 vs L1 T0
short 254, JW Climbing 386, JW Dauer ANOVA 2430 v4, JW
Dauer Enriched by AdjDT0 vs L1T0, JW Dauer Recovery
Specific 1984, Mitochondrial, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRGDPAPER-Yeast Mito (All)-Worm Homologues,
PJRGDPAPER-Yeast Mito (Prokaryotic)-Worm Homo,
PJRPAPER-Amino Acid Metabolism, PJRPAPER-Chromosome II
Genes, PJRPAPER-Mitochondrial, PJRPAPER-Oxidoreductase,
Proteome Cell Role (Oct 2000)- Amino Acid Metaboli,
Proteome Funct Class (Mar 2000)-Oxidoreductases,
Proteome LG II [May 2002], Proteome Localization (Oct
2000)-Mitochondrial, Proteome Subcellular Localization
- Mitochond, Reinke et al 2004, list of genes in
cluster order, rosetta, sir2.1ok434 283 min,
sir2.1--ok434all 558 min, Valerie Reinke's 11927 genes,
wmyst, YK genes 95% different in muscle and intestin
C06A8.2 C06A8.2 P W All gene names: C06A8.2; 2I70; CE31292; WBGene00015513; WP:CE31292
Member of lists ( lists):
mount11, R=0.38, PJ No8 First 1500,
PJRPAPER-Chromosome II Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C06A8.4 C06A8.4 P W All gene names: skr-17; C06A8.4; 2I75; CE02455; NM_063237; WBGene00004823; WP:CE02455 WormBase description: skr-17 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-17 has no known function in vivo, since skr-17(RNAi) animals are at least superficially normal, and SKR-17 does not appear to interact in vitro with any of the C. elegans cullin homologs.
Member of lists ( lists):
771-Egg-99-min, mount07, R=0.43,
daf-16 p<.001, 7-01, FP 1311 similar in intestine and
muscle, FP 1938 Intestine genes, GD-Chol NSD/AMB,
GD-Lev Muscle Genes, Germ line-enriched, josh laura1/2
common, Peter's Acetyl-P001 Superset, Peter's L1 Muscle
Genes (95 Con; 02-01-01), PJ 1445 M0.05I0.001, PJ 1617
Muscle and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome II
Genes, PJRPAPER-L1 Muscle Genes (95),
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev nsd, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
II [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes
C06A8.6 C06A8.6 P W All gene names: C06A8.6; 2I63; CE02457; WBGene00015516; WP:CE02457
Member of lists ( lists):
mount04, R=0.41, josh laura1/2
common, Male-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome II Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
II [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes, wmyst, YK genes 95% different in
muscle and intestin
C06B8.8 C06B8.8 P W All gene names: rpl-38; C06B8.8; C06B8.8.1; C06B8.8.2; 5P991; CE20485; NM_074459; WBGene00004452; WP:CE20485 WormBase description: rpl-38 encodes a large ribosomal subunit L38 protein.
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), Bea ras L2 mixed 561, bea RasL2 486
genes, mount23, R=0.53, Bea L2 mixed 709, Bea Ras L2
time course (99%), FP 1311 similar in intestine and
muscle, FP 1938 Intestine genes, GD-Chol NSD/AMB,
GD-GABA NSD/AMB (Anova/TTest), GD-L1 Muscle Genes,
GD-L1-Sp (wrt U29 95), GD-L2 Muscle Genes, GD-The
Worm-Yeast in common with Muscle, GD-U25 muscle, GD-U29
muscle genes, JW 1703 merged Peters zMuscle 8-02, L2 Hs
genes 99.9, Neuro-1 L1 Upreg (11 20 00), Peter's
Acetyl-P001 Superset, Peter's All Muscle Genes (1 16
01), Peter's Dorsal List (02-19-01), Peter's L1 Muscle
Genes (95 Con; 02-01-01), Peter's L1-Dorsal+Excr avg
(99.9), Peter's L2 Muscle (95 Con; 02-01-01), Peter's
Muscle-Neuro Ubiq (99.9 Superset list), Peter's Neuro
(95; 06-18-01), Peter's Neuro (99; 06-18-01), Peter's
Neuro (99.9; 06-18-01), Peter's Superset of L1-L2 Genes
(considering 99.9, PJ 836 muscle and intestine in
common, PJ 1005I0.05M0.001, PJ 1445 M0.05I0.001, PJ
1617 Muscle and intestine in common, PJ 1899
IntestineMuscleCon95incommon, PJ 3085 intestinal genes,
PJ 3118 intestinal genes, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No8 First 1500, PJ
No10-1-R16 First 1500, PJ No10-1-R15 First 1500,
PJRPAPER-1329 L1 Muscle List (genes within 10,
PJRPAPER-1329 L1 Muscle Genes (Chromo V),
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1 Muscle Genes
(1364), PJRPAPER-Ribosome Component, PJRPAPER-zL1
Muscle Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle
Genes, PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes,
PJRPAPERz-L1 Cluster (10 kb; no para or ops),
PJRPAPERz-L1 Clustered(without Paralogues wit,
PJRPAPERz-L2 Clustered (inc Operons not Paral,
PJRPAPERz-L2 Clustered(without Paralogues wit, Protein
expression, Proteome Cell Role (Oct 2000)- Protein
Synthesis, Proteome Funct Class (Mar 2000)-RNA-Binding
Subuni, Proteome Funct Class (Mar 2000)-Ribosomal
subunit, Proteome LG V [May 2002], Proteomes Ribosomal
List, rasl2, Reinke et al 2004, list of genes in
cluster order, RNA binding, rosetta, Valerie Reinke's
11927 genes, wmyst, YK intestinal genes (p<.001), YK
Similar muscle and intestine genes
C06C3.1 C06C3.1 P W All gene names: mel-11; C06C3.1; 2J657; CE20486; CE32566; CE32567; CE36682; NM_063593; WBGene00003196; WP:CE20486; WP:CE32566; WP:CE32567; WP:CE36682 WormBase description: ankyrin-like repeats
Member of lists ( lists):
1214-L2-99-min, mount02, R=0.15,
stuart layer7, Cell Structure, josh laura2 4/8 common,
Peter's Hypodermal Positive Controls (12 01 00), PJ
4746 intestinal gene Con95, PJ negative control,
PJRPAPER-Chromosome II Genes, PJRPAPER-Hypodermal
Genes, PJRPAPER-Muscle negative controls,
PJRPAPER-Serine/Threonine Kinases, PJRPAPER-Tyrosine
Kinase, Proteome Cell Role (Oct 2000)- Cell Structure,
Proteome Funct Class (Mar 2000)-Regulatory Subunit,
Proteome LG II [May 2002], Reinke et al 2004, list of
genes in cluster order, Valerie Reinke's 11927 genes,
wmyst
C06C6.6 C06C6.6 P W All gene names: C06C6.6; 5Q465; CE15600; WBGene00007380; WP:CE15600
Member of lists ( lists):
mount04, R=0.41, age1-216daf2-1384All
In age1daf2 modif 703 mi, daf-2 1384 min, daf-2 1384
InAgingSetMin3ClusterC, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome V Genes,
PJRPAPER-Muslce (L1) negative controls-2, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG V
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C06E1.3 C06E1.3 P W All gene names: C06E1.3; 3J669; CE30481; WBGene00015519; WP:CE30481
Member of lists ( lists):
mount13, R=0.10, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome III
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C06E2.1 C06E2.1 P W All gene names: C06E2.1; CE03944; WBGene00015527; WP:CE03944; XJ490
Member of lists ( lists):
mount14, R=0.38, daf-2 1384
InAgingSetMin3ClusterB, daf-2 1384 min, GD-Chol Down,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, GD-U29-Sp
(wrt L1 95), Peter's Acetyl-P001 Superset,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome X Genes,
PJRPAPER-xU29-specific (wrtWT), PJRPAPER-zU29WLev
down-up, PJRPAPER-zU29-Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG X [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C06E7.2 C06E7.2 P W All gene names: C06E7.2; C06E7.2.1; C06E7.2.2; 4G607; CE33516; WBGene00015539; WP:CE33516
Member of lists ( lists):
mount06, R=0.21, JW SAGE Dauer all,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order
C06E7.4 C06E7.4 P W All gene names: C06E7.4; 4G616; CE29026; WBGene00015541; WP:CE29026
Member of lists ( lists):
mount10, R=0.19, mount14, R=0.38, PJ
1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C06E7.6 C06E7.6 P W All gene names: spe-27; C06E7.6; 4G630; CE03962; NM_068474; WBGene00004973; WP:CE03962 WormBase description: Uncloned locus required for sperm activation (morphogenesis of sperm to crawling spermatozoa), and may act in a common signaling pathway with spe-12 and spe-29 to initiate sperm activation, based on genetic analysis.
Member of lists ( lists):
mount17, R=0.37, GD-Chol Down,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, GD-U29-Sp
(wrt L1 95), male99, Male-enriched, Peter's Acetyl-P001
Superset, PJ negative control, PJRPAPER-Cholin
Superset, PJRPAPER-Chromosome IV Genes, PJRPAPER-Male
Genes, PJRPAPER-Muscle negative controls,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
IV [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes
C06E8.5 C06E8.5 P W All gene names: C06E8.5; 3I92; CE00801; WBGene00015544; WP:CE00801 WormBase description: bacterial permeability-increasing protein
Member of lists ( lists):
mount16, R=0.40, JW SAGE Dauer all,
JW SAGE Dauer on Array v1, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome X Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C06G1.1 C06G1.1 P W All gene names: C06G1.1; CE27054; WBGene00015545; WP:CE27054; XR251
Member of lists ( lists):
mount14, R=0.38, daf-2 1384 min,
daf-2 1384 InAgingSetMin3ClusterA, JW AdjD T0 vs L1 T0
short 254, JW Dauer ANOVA 2430 v4, JW Dauer Enriched by
AdjDT0 vs L1T0, JW Dauer Recovery Specific 1984, JW
Late 325, PJ 4212 IntestineMuscleTtest0.05,
PJRPAPER-Chromosome X Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG X [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C06G1.4 C06G1.4 P W All gene names: ain-1; C06G1.4; C06G1.4.1; C06G1.4.2; CE03967; WBGene00015547; WP:CE03967; XR231
Member of lists ( lists):
mount01, R=0.15, stuart layer7, FP
1938 Intestine genes, PJ 2378 IntestineMusclettest0.01,
PJ 4212 IntestineMuscleTtest0.05, PJ 4746 intestinal
gene Con95, PJRPAPER-Chromosome X Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG X
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK
intestinal genes (p<.001), YK Similar muscle and
intestine genes
C06G1.5 C06G1.5 P W All gene names: C06G1.5; CE37187; WBGene00015548; WP:CE37187; XR254 WormBase description: protein phosphatase PP2A
Member of lists ( lists):
mount01, R=0.15, GD-Chol Down,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, GD-U29-Sp
(wrt L1 95), JW Dauer ANOVA 2430 v4, JW Dauer Recovery
Specific 1984, JW Transient 195, Peter's Acetyl-P001
Superset, PJ No 2 first 1500, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome IV Genes, PJRPAPER-Protein
Phosphotases, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes, Protein
phosphatases, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome Funct Class (Mar 2000)-Protein
Phosphotas, Proteome LG X [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C06G3.2 C06G3.2 P W All gene names: klp-18; C06G3.2; 4H807; CE07978; NM_068692; WBGene00002228; WP:CE07978 WormBase description: klp-18 encodes a kinesin motor protein whose motor domain is most similar to that of the Xenopus and human klp2 proteins; loss of klp-18 activity via RNAi indicates that KLP-18 is required for the assembly of a disordered array of acentrosomal (female meiotic) microtubules into an organized, functional, bipolar spindle; in addition, KLP-18 may also play a role in cortex dynamics during post-meiotic development; antibody staining indicates that during meiosis and mitosis (early embryonic) KLP-18 localizes to: 1) spindles, and especially spindle poles, during prometaphase, metaphase, and early anaphase, and 2) the interzone during late anaphase and telophase; in early embryos, KLP-18 is also seen around the nucleus and cell cortex at sites of cell-cell contact; KLP-18 expression in later embryos and larvae is confined to the germ line which, in adults, stains brightly in both distal and proximal regions. WormBase CDS description: kinesin-like protein
Member of lists ( lists):
1214-L2-99-min, mount07, R=0.43,
Art-1-7, Bea L2 mixed 709, Cell Structure, daf-16
p<.001, 7-01, PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome IV Genes, Proteome Cell Role
(Oct 2000)- Cell Structure, Proteome LG IV [May 2002],
Proteome Localization (Oct 2000)-Cytoskeletal, Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes
C06G4.1 C06G4.1 P W All gene names: C06G4.1; 3J79; CE28203; WBGene00015557; WP:CE28203 WormBase description: possible RNA binding protein
Member of lists ( lists):
mount07, R=0.43, FP 1938 Intestine
genes, PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome III Genes, Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, YK intestinal genes (p<.001), YK
Similar muscle and intestine genes
C06G8.1 C06G8.1 P W All gene names: C06G8.1; 4L544; CE05229; WBGene00007384; WP:CE05229
Member of lists ( lists):
771-Egg-99-min, mount08, R=0.21,
age1-216daf2-1384All In age1daf2 modif 703 mi, daf-2
1384 min, daf-2 1384 InAgingSetMin3ClusterA, JW AdjD T0
vs L1 T0 short 254, JW Dauer ANOVA 2430 v4, JW Dauer
Enriched by AdjDT0 vs L1T0, JW Dauer Recovery Specific
1984, JW Down 540, JW Down Late 162, megacluster 233
min, PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ No5 first 1500,
PJRPAPER-Chromosome IV Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C06H5.1 C06H5.1 P W All gene names: C06H5.1; 5S376; CE27668; WBGene00007392; WP:CE27668 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Member of lists ( lists):
mount08, R=0.21, Aging p<.001, josh
laura1/2 common, Proteome Cell Role (Oct 2000)- Genes
of Unknown Ce, Proteome LG III [May 2002], Proteome LG
V [May 2002], Ras spe99, Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C07A12.4 C07A12.4 P W All gene names: pdi-2; C07A12.4; C07A12.4a.1; C07A12.4a.2; CE03972; CE31878; NM_076377; NM_182439; WBGene00003963; WP:CE03972; WP:CE31878; XF145 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
Member of lists ( lists):
stuart layer7, stuart layer12,
GD-Chol UP, GD-GABA NSD/AMB (Anova/TTest), GD-L1 Muscle
Genes, GD-L1-Sp (wrt U29 95), GD-L2 Muscle Genes,
GD-Lev Muscle Genes, GD-Lev-Sp (wrt U29 95), GD-The
Worm-Yeast in common with Muscle, JW 1703 merged Peters
zMuscle 8-02, JW Climbing 386, JW Dauer ANOVA 2430 v4,
JW Dauer Recovery Specific 1984, Peter's Acetyl-P001
Superset, Peter's All Muscle Genes (1 16 01), Peter's
Dorsal List (02-19-01), Peter's L1-Dorsal+Excr avg
(99.9), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's Lev UP
unc-29 DOWN (anova+10), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, PJ 836
muscle and intestine in common, PJ 1005I0.05M0.001, PJ
1445 M0.05I0.001, PJ 1617 Muscle and intestine in
common, PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No5 first 1500, PJRPAPER-1329
L1 Muscle List (genes within 10, PJRPAPER-1329 L1
Muscle Genes (Chromo X), PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome X Genes, PJRPAPER-L1 Muscle Genes
(95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev up, PJRPAPERz-L1
Cluster (10 kb; no para or ops), PJRPAPERz-L1
Clustered(without Paralogues wit, Proteome LG X [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, sir2.1ok434 283 min, sir2.1--ok434all
558 min, Valerie Reinke's 11927 genes, wmyst
C07A12.5 C07A12.5 P W All gene names: spr-3; C07A12.5; CE36266; CE36267; WBGene00005008; WP:CE36266; WP:CE36267; XF135 WormBase description: zinc finger protein
Member of lists ( lists):
mount11, R=0.38, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome X Genes,
PJRPAPER-Zinc Finger Containing Protein, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG X
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C07A9.5 C07A9.5 P W All gene names: C07A9.5; 3K770; CE02981; WBGene00007401; WP:CE02981 WormBase description: Actin-binding protein
Member of lists ( lists):
mount04, R=0.41, male99,
Male-enriched, Peter's Unreliable Muscle Controls (03
16 01), PJ No8 First 1500, PJRPAPER-Chromosome III
Genes, PJRPAPER-Male Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG III [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta, YK
genes 95% different in muscle and intestin
C07A9.7 C07A9.7 P W All gene names: C07A9.7; 3K782; CE00498; CE31769; WBGene00007403; WP:CE00498; WP:CE31769
Member of lists ( lists):
mount02, R=0.15, GD-Chol NSD/AMB,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes, GD-U29-Sp
(wrt L1 95), Peter's Acetyl-P001 Superset,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome III
Genes, PJRPAPER-xU29-specific (wrtWT),
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
III [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK genes 95% different in muscle and intestin
C07B5.2 C07B5.2 P W All gene names: C07B5.2; CE00892; WBGene00007407; WP:CE00892; XK134
Member of lists ( lists):
mount01, R=0.15, FP 1938 Intestine
genes, GD-Chol NSD/AMB, GD-GABA NSD/AMB (Anova/TTest),
GD-U25 muscle, GD-U29 muscle genes, Male-enriched,
Peter's Acetyl-P001 Superset, Peter's Dorsal List
(02-19-01), Peter's L1-Dorsal+Excr avg (99.9), Peter's
Neuro (95; 06-18-01), Peter's Neuro (99; 06-18-01),
Peter's Neuro (99.9; 06-18-01), PJ 3085 intestinal
genes, PJ 3118 intestinal genes, PJ 4746 intestinal
gene Con95, PJ No8 First 1500, PJRPAPER-Cholin
Superset, PJRPAPER-Chromosome X Genes,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
X [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
YK intestinal genes (p<.001)
C07B5.4 C07B5.4 P W All gene names: C07B5.4; C07B5.4b.1; C07B5.4b.2; CE37311; CE37312; WBGene00007409; WP:CE37311; WP:CE37312; XK153
Member of lists ( lists):
mount08, R=0.21, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome X Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG X [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C07D10.2 C07D10.2 P W All gene names: bath-44; C07D10.2; C07D10.2b.1; C07D10.2b.2; 2H687; CE27057; CE29072; WBGene00015567; WP:CE27057; WP:CE29072 WormBase description: The C07D10.2 gene encodes a protein with a meprin-associated Traf homology (MATH) domain that may be involved in apoptosis.
Member of lists ( lists):
mount11, R=0.38, FP 645 Intestine
specific genes, FP 1938 Intestine genes, JW Dauer
Enriched AdjT0 vs AdjT12, JW Dauer Enriched by AdjDT0
vs L1T0, PJ 1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome II Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG II [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C07D10.4 C07D10.4 P W All gene names: nas-7; C07D10.4; 2H690; CE34663; NM_063151; WBGene00003526; WP:CE34663 WormBase description: Zinc metalloprotease
Member of lists ( lists):
mount16, R=0.40, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW Late 325, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome II Genes, Proteome Cell Role
(Oct 2000)- Genes of Unknown Ce, Proteome LG II [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C07D10.5 C07D10.5 P W All gene names: C07D10.5; 2H673; CE36628; WBGene00015569; WP:CE36628
Member of lists ( lists):
mount12, R=0.29, daf-16 p<.001, 7-01,
PJ 4212 IntestineMuscleTtest0.05, PJRPAPER-Chromosome
II Genes, Proteome Cell Role (Oct 2000)- Genes of
Unknown Ce, Proteome LG II [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes
C07E3.10 C07E3.10 P W All gene names: C07E3.10; 2K637; CE15607; WBGene00007420; WP:CE15607
Member of lists ( lists):
mount14, R=0.38, daf-2 1384 min,
daf-2 1384 InAgingSetMin3ClusterB, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW Late 325,
PJRPAPER-Chromosome II Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order
C07E3.3 C07E3.3 P W All gene names: C07E3.3; 2K644; CE32305; WBGene00007414; WP:CE32305
Member of lists ( lists):
Male-enriched, PJRPAPER-Chromosome II
Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG II [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C07E3.4 C07E3.4 P W All gene names: C07E3.4; 2K653; CE02120; WBGene00007415; WP:CE02120 WormBase description: Protein-tyrosine phosphatase
Member of lists ( lists):
mount04, R=0.41, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromosome II Genes, PJRPAPER-Sperm
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG II [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Sperm-enriched,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
C07E3.7 C07E3.7 P W All gene names: C07E3.7; WBGene00043116
Member of lists ( lists):
Proteome LG II [May 2002], Reinke et
al 2004, list of genes in cluster order
C07E3.9 C07E3.9 P W All gene names: C07E3.9; 2K641; CE02124; WBGene00007419; WP:CE02124 WormBase description: phospholipase A2
Member of lists ( lists):
mount22, R=0.58, Art-1-7, GD-Chol
Down, GD-GABA NSD/AMB (Anova/TTest), GD-U25 muscle,
GD-U29-Sp (wrt Lev 95), GD-U29 muscle genes,
GDPAPER-Prelim Mixed Muscle, Peter's Acetyl-P001
Superset, Peter's All Muscle Genes (1 16 01), Peter's
L1 Muscle Genes (95 Con; 02-01-01), Peter's L2 Muscle
(95 Con; 02-01-01), Peter's Muscle-Neuro Ubiq (99.9
Superset list), Peter's Neuro (95; 06-18-01), Peter's
Neuro (99; 06-18-01), Peter's Neuro (99.9; 06-18-01),
Peter's UP-Reg Muscle (10 25 00), PJ No8 First 1500,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome II Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-zU29WLev nsd, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome LG
II [May 2002], Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes
C07G1.3 C07G1.3 P W All gene names: pct-1; C07G1.3; C07G1.3a.1; C07G1.3a.2; 4I953; CE06779; CE29073; CE32571; NM_068971; WBGene00003961; WP:CE06779; WP:CE29073; WP:CE32571; pct WormBase description: ser/thr protein kinase
Member of lists ( lists):
mount11, R=0.38, Cell cycle genes,
GD-Chol "\/", GD-Lev Muscle Genes, GD-Lev-Sp (wrt wt
95), GD-U29 muscle genes, GD-U29-Sp (wrt L1 95),
Mitosis genes, Peter's Acetyl-P001 Superset, PJ
1158IntestineMuscleTTEST0.001, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No8 First 1500, PJRPAPER-Cell Cycle Genes,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Mitosis, PJRPAPER-Serine/Threonine Kinases,
PJRPAPER-xLEV-specific (wrtWT), PJRPAPER-xU29-specific
(wrtWT), PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev
down-up, PJRPAPER-zU29-Genes, Protein kinases, Proteome
Cell Role (Oct 2000)- Mitosis, Proteome Cell Role (Oct
2000)- Cell Cycle Control, Proteome Cell Role (Oct
2000)- Protein Modificatio, Proteome Funct Class (Mar
2000)-Transferase, Proteome Funct Class (Mar
2000)-Protein Kinase, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, wmyst, YK genes 95%
different in muscle and intestin
C07G2.1 C07G2.1 P W All gene names: cej-1; C07G2.1; C07G2.1a.1; C07G2.1a.2; 3F579; CE00665; CE33971; WBGene00000465; WP:CE00665; WP:CE33971 WormBase description: cej-1 encodes a protein with a chitin binding peritrophin-A domain that is required, in conjunction with B0280.5, for early embryonic development; cej-1 mRNA is expressed specifically in the adult hermaphrodite germ line, is a direct target of GLD-1, and has an RNAi phenotype consistent with the hypothesis that CEJ-1 is an effector of GLD-1 in the germline.
Member of lists ( lists):
mount07, R=0.43, GDPAPER-Prelim Mixed
Muscle, Germ line-enriched, Highly regulated #2, josh
laura1/2 common, Peter's All Muscle Genes (1 16 01),
Peter's UP-Reg Muscle (10 25 00), PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No4 first1500, PJ No5 first 1500, PJ No8
First 1500, PJ No10-1-R15 First 1500, PJ No10-1-R16
First 1500, PJ No 2 first 1500, PJRPAPER-Chromosome III
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG III [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes
C07G3.2 C07G3.2 P W All gene names: C07G3.2; 5D999; CE07993; WBGene00015574; WP:CE07993
Member of lists ( lists):
mount25, R=0.44, FP 645 Intestine
specific genes, FP 1938 Intestine genes,
PJRPAPER-Chromosome V Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin, YK intestinal genes
(p<.001), YK intestine-specific genes
C07H6.3 C07H6.3 P W All gene names: C07H6.3; C07H6.3.1; C07H6.3.2; 3I603; CE29074; WBGene00015580; WP:CE29074
Member of lists ( lists):
JW Dauer ANOVA 2430 v4, JW Dauer
Recovery Specific 1984, JW Early 538, Male-enriched,
Peter's Neuro (95; 06-18-01), Peter's Neuro (99;
06-18-01), PJRPAPER-Chromosome III Genes, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome LG III
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C07H6.4 C07H6.4 P W All gene names: C07H6.4; 3I591; CE00755; WBGene00015581; WP:CE00755 WormBase description: Probable RNA binding protein
Member of lists ( lists):
mount11, R=0.38, stuart layer13, FP
1311 similar in intestine and muscle, FP 1938 Intestine
genes, GD-Chol Down, GD-GABA NSD/AMB (Anova/TTest),
GD-L1 Muscle Genes, GD-L2 Muscle Genes, GD-U29 muscle
genes, GD-U29-Sp (wrt Lev 95), GD-WT-Sp (wrt Lev 95),
Germ line-enriched, JW 1703 merged Peters zMuscle 8-02,
Peter's Acetyl-P001 Superset, Peter's All Muscle Genes
(1 16 01), Peter's L1 Muscle Genes (95 Con; 02-01-01),
Peter's L2 Muscle (95 Con; 02-01-01), Peter's Superset
of L1-L2 Genes (considering 99.9, PJ 836 muscle and
intestine in common, PJ 1005I0.05M0.001, PJ 1445
M0.05I0.001, PJ 1617 Muscle and intestine in common,
PJ 1899 IntestineMuscleCon95incommon, PJ 3085
intestinal genes, PJ 3118 intestinal genes, PJ 4746
intestinal gene Con95, PJ No10-1-R16 First 1500, PJ
No10-1-R15 First 1500, PJRPAPER-1329 L1 Muscle Genes
(Chromo III), PJRPAPER-1329 L1 Muscle List (genes
without 1, PJRPAPER-Cholin Superset,
PJRPAPER-Chromosome III Genes, PJRPAPER-L1 Muscle Genes
(95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-xWT-specific (wrtLEV), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zU29WLev down, PJRPAPER-zU29-Genes, Proteome
Cell Role (Oct 2000)- Genes of Unknown Ce, Proteome
Funct Class (Mar 2000)-RNA-Binding Subuni, Proteome LG
III [May 2002], Reinke et al 2004, list of genes in
cluster order, RNA binding, Valerie Reinke's 11927
genes, YK intestinal genes (p<.001), YK Similar muscle
and intestine genes
C07H6.5 C07H6.5 P W All gene names: cgh-1; C07H6.5; C07H6.5.1; C07H6.5.2; 3I586; CE00839; NM_066245; WBGene00000479; WP:CE00839 WormBase description: The ortholog of a RNA helicase ste13/ME31B/RCK/p54 that is required for oocyte and sperm function and the prevention of physiological germline-associated apoptosis; it is expressed in the early embryo and germline and localizes to P granules. WormBase CDS description: ATP-dependent RNA helicase
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
daf-2 1384 min, daf-2 1384 InAgingSetMin3ClusterC,
GDPAPER-Prelim Mixed Muscle, Germ line-enriched, josh
laura1/2 common, josh laura2 4/8 common, Peter's All
Muscle Genes (1 16 01), Peter's Lev UP unc-29 DOWN
(anova+10), Peter's UP-Reg Muscle (10 25 00),
PJRGDPAPER-Yeast Mito (All)-Worm Homologues,
PJRGDPAPER-Yeast Mito (Prokaryotic)-Worm Homo,
PJRPAPER-Chromosome III Genes, PJRPAPER-RNA Processing,
Protein expression, Proteome Cell Role (Oct 2000)- RNA
Processing/Modi, Proteome Funct Class (Mar
2000)-Helicase, Proteome LG III [May 2002], Proteome
Localization (Oct 2000)-Nuclear, Reinke et al 2004,
list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, wmyst
C08B11.1 C08B11.1 P W All gene names: zyg-11; C08B11.1; 2I309; CE01471; NM_063276; WBGene00006996; WP:CE01471 WormBase description: Leucine Rich Repeat (2 copies)
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
Art-1-7, embry devel, josh laura1/2 common, josh laura2
4/8 common, Oocyte-enriched, PJ 2378
IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome II Genes,
PJRPAPER-Meiosis, PJRPAPER-Oocyte Genes, Proteome Cell
Role (Oct 2000)- Meiosis, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C08B11.2 C08B11.2 P W All gene names: hda-2; C08B11.2; 2I312; CE01472; NM_063277; WBGene00001835; WP:CE01472 WormBase description: transcriptional regulatory protein (RPD3)
Member of lists ( lists):
mount02, R=0.15, Aging p<.001, C.
elegans transcription factors, FP 1938 Intestine genes,
Germ line-enriched, PJ 1158IntestineMuscleTTEST0.001,
PJ 2378 IntestineMusclettest0.01, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Chromatin/Chromosome Structure,
PJRPAPER-Chromosome II Genes, PJRPAPER-Histone
deacetylases (Putative), Proteome Cell Role (Oct 2000)-
Chromatin/Chromosom, Proteome Cell Role (Oct 2000)- Pol
II Transcriptio, Proteome Funct Class (Mar
2000)-Hydrolase, Proteome LG II [May 2002], Proteome
Localization (Oct 2000)-Nuclear, Reinke et al 2004,
list of genes in cluster order, RNA pol II
transcription, Valerie Reinke's 11927 genes, wmyst, YK
intestinal genes (p<.001), YK Similar muscle and
intestine genes
C08B11.3 C08B11.3 P W All gene names: C08B11.3; 2I314; CE01473; WBGene00007433; WP:CE01473 WormBase description: Zinc finger, C2H2 type
Member of lists ( lists):
771-Egg-99-min, mount09, R=0.16,
operon first genes, PJ 4212 IntestineMuscleTtest0.05,
PJRPAPER-Chromosome II Genes, PJRPAPER-Zinc Finger
Containing Protein, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG II [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Valerie Reinke's 11927 genes, YK genes 95% different in
muscle and intestin
C08B11.4 C08B11.4 P W All gene names: nrf-6; C08B11.4; 2I320; CE27798; NM_063279; WBGene00003813; WP:CE27798 WormBase description: nrf-6 encodes a protein with 12 predicted transmembrane domains that is highly similar to NDG-4 and affects embryonic viability, yolk transport, locomotion, body morphology, and affects sensitivity to fluoxetine with respect to nose-contraction response in a common pathway with ndg-4 and nrf-5; expressed in the most anterior cells of the hypodermis and in the intestine and is required in the intestine for fluoxetine-induced nose contraction and yolk transport
Member of lists ( lists):
684 N2 hs min (L2), 1003 N2 hs min
(egg + L2), mount08, R=0.21, Art-1-7, josh laura1/2
common, JW Dauer Enriched by AdjDT0 vs L1T0, L2 Hs
genes 99.9, PJ 4212 IntestineMuscleTtest0.05,
PJRPAPAR-Acetycholine Receptors, PJRPAPER-Chromosome II
Genes, PJRPAPER-Muscle negative controls,
PJRPAPER-Plasma Membrane, PJRs Acetylcholine Genes
Poorly Characterized (Pos, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome Cell Role (Oct
2000)- Small Molecule Tran, Proteome Cell Role (Oct
2000)- Signal Transduction, Proteome Funct Class (Mar
2000)-Transporter, Proteome Funct Class (Mar
2000)-Receptor (Signalin, Proteome LG II [May 2002],
Proteome Localization (Oct 2000)-Unspecified membr,
Proteome Localization (Oct 2000)-Plasma membrane,
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes, YK genes 95%
different in muscle and intestin
C08B11.6 C08B11.6 P W All gene names: C08B11.6; C08B11.6.1; C08B11.6.2; CE30856; WBGene00007434; WP:CE30856 WormBase description: actin
Member of lists ( lists):
mount02, R=0.15, Cell Structure,
Cellbio, Germ line-enriched, Peter's Unreliable Muscle
Controls (03 16 01), PJ 4212 IntestineMuscleTtest0.05,
PJRGDPAPER-General Cytoskeletal Proteins,
PJRPAPER-Chromosome II Genes, PJRPAPER-Cytoskeleton,
Proteome Cell Role (Oct 2000)- Cell Structure, Proteome
Funct Class (Mar 2000)-Structural Protein, Proteome LG
II [May 2002], Proteome Localization (Oct
2000)-Cytoskeletal, Reinke et al 2004, list of genes in
cluster order, rosetta, Valerie Reinke's 11927 genes,
wmyst
C08B6.3 C08B6.3 P W All gene names: C08B6.3; 5K592; CE05240; WBGene00007424; WP:CE05240
Member of lists ( lists):
mount09, R=0.16, JW Dauer ANOVA 2430
v4, JW Dauer Recovery Specific 1984, JW Transient 195,
PJRPAPER-Chromosome V Genes, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG V [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C08B6.9 C08B6.9 P W All gene names: aos-1; C08B6.9; 5K608; CE05246; NM_073203; WBGene00000142; WP:CE05246 WormBase description: aos-1 encodes the C. elegans ortholog of Saccharomyces cerevisiae Aos1p and human SUMO-1 activating enzyme E1 N subunit; by homology, AOS-1 is predicted to form, with a catalytic subunit, UBA-2, a heterodimeric enzyme that activates the ubiquitin-like protein SMO-1/SUMO in preparation for its covalent attachment to target proteins to regulate their subcellular localization and/or stability; in C. elegans, AOS-1 is required for embryonic and larval development, as well as for proper Hox gene regulation; uba-2/aos-1(RNAi) animals that survive embryogenesis show ectopic expression of EGL-5 and ectopic anterior sensory ray formation. WormBase CDS description: ubiquitin activating enzyme
Member of lists ( lists):
mount02, R=0.15, Aging p < .01, Aging
p<.001, GD-Chol "\/", GD-Lev Muscle Genes, GD-Lev-Sp
(wrt wt 95), Germ line-enriched,
Hermaphrodite-enriched, Peter's Acetyl-P001 Superset,
PJ 1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Cholin Superset, PJRPAPER-Chromosome V
Genes, PJRPAPER-Protein Degradation,
PJRPAPER-Ubiquitin-Related, PJRPAPER-xLEV-specific
(wrtWT), PJRPAPER-zLev-Genes, PJRPAPER-zU29WLev
down-up, Protein expression, Proteome Cell Role (Oct
2000)- Protein Modificatio, Proteome Cell Role (Oct
2000)- Protein Degradation, Proteome Funct Class (Mar
2000)-Activator, Proteome LG V [May 2002], Reinke et al
2004, list of genes in cluster order, rosetta, Valerie
Reinke's 11927 genes, wmyst, YK genes 95% different in
muscle and intestin
C08C3.2 C08C3.2 P W All gene names: bath-15; C08C3.2; 3I864; CE39087; WBGene00015590; WP:CE39087
Member of lists ( lists):
mount07, R=0.43, GD-GABA Up
(Anova/TTest), GD-Musc muscle, Germ line-enriched, josh
laura1/2 common, PJRPAPER-Chromosome III Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG III [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C08E3.13 C08E3.13 P W All gene names: C08E3.13; 2B924; WBGene00015605
Member of lists ( lists):
mount08, R=0.21, GD-Chol "/\",
GD-GABA Down (Anova/TTest), GD-L1 Muscle Genes,
GD-L1-Sp (wrt U29 95), GD-L2 Muscle Genes, GD-WT-Sp
(wrt Lev 95), Highly regulated #2, josh laura1/2
common, JW 1703 merged Peters zMuscle 8-02, Neuro-1 L1
Upreg (11 20 00), Peter's Acetyl-P001 Superset, Peter's
All Muscle Genes (1 16 01), Peter's Dorsal List
(02-19-01), Peter's L1-Dorsal+Excr avg (99.9), Peter's
L1 Muscle Genes (95 Con; 02-01-01), Peter's L2 Muscle
(95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9,
PJRPAPER-Cholin Superset, PJRPAPER-Chromosome II Genes,
PJRPAPER-L1 Muscle Genes (95), PJRPAPER-L1 Muscle Genes
(1364), PJRPAPER-xWT-specific (wrtLEV),
PJRPAPER-xWT-specific (wrtU29), PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zL2 Muscle Genes,
PJRPAPER-zU29WLev up-down, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG II [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta
C08F1.6 C08F1.6 P W All gene names: C08F1.6; 2C78; CE08021; WBGene00015610; WP:CE08021
Member of lists ( lists):
mount12, R=0.29, PJ 4212
IntestineMuscleTtest0.05, PJRPAPER-Chromosome II Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG II [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C08F11.10 C08F11.10 P W All gene names: C08F11.10; 4O412; CE17387; WBGene00007457; WP:CE17387
Member of lists ( lists):
mount04, R=0.41, Aging p < .01,
Aging.p01, Art-1-7, Male-enriched, PJ 4746 intestinal
gene Con95, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, Valerie
Reinke's 11927 genes
C08F11.11 C08F11.11 P W All gene names: C08F11.11; 4O410; CE17388; WBGene00007458; WP:CE17388
Member of lists ( lists):
mount22, R=0.58, FP 1938 Intestine
genes, GDPAPER-Prelim Mixed Muscle, Highly regulated
#2, Highly regulated genes, josh laura1/2 common,
Peter's All Muscle Genes (1 16 01), Peter's Neuro (95;
06-18-01), Peter's Neuro (99; 06-18-01), Peter's UP-Reg
Muscle (10 25 00), PJ 1158IntestineMuscleTTEST0.001, PJ
1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No5 first 1500, PJ No8 First 1500, PJ
No10-1-R15 First 1500, PJ No10-1-R16 First 1500,
PJRPAPER-Chromosome IV Genes, PJRPAPER-Muslce (L1)
negative controls-2, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, Valerie
Reinke's 11927 genes, YK intestinal genes (p<.001), YK
Similar muscle and intestine genes
C08F11.12 C08F11.12 P W All gene names: C08F11.12; 4O416; CE17389; WBGene00007459; WP:CE17389
Member of lists ( lists):
mount22, R=0.58, GDPAPER-Prelim Mixed
Muscle, Highly regulated #2, Highly regulated genes,
josh laura1/2 common, Peter's All Muscle Genes (1 16
01), Peter's UP-Reg Muscle (10 25 00), PJ No5 first
1500, PJ No 2 first 1500, Proteome Cell Role (Oct
2000)- Genes of Unknown Ce, Proteome LG IV [May 2002],
Reinke et al 2004, list of genes in cluster order,
rosetta, Valerie Reinke's 11927 genes
C08F8.3 C08F8.3 P W All gene names: C08F8.3; 4L921; CE30596; WBGene00007445; WP:CE30596
Member of lists ( lists):
mount07, R=0.43, stuart layer13,
daf-16 p<.001, 7-01, Germ line-enriched, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No 2 first 1500, PJRPAPER-Chromosome IV
Genes, Proteome Cell Role (Oct 2000)- Genes of Unknown
Ce, Proteome LG IV [May 2002], Reinke et al 2004, list
of genes in cluster order, rosetta, Valerie Reinke's
11927 genes, YK genes 95% different in muscle and
intestin
C08F8.4 C08F8.4 P W All gene names: C08F8.4; 4L922; CE05251; WBGene00007446; WP:CE05251
Member of lists ( lists):
mount04, R=0.41, male99,
Male-enriched, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Male Genes, PJRPAPER-Muscle negative controls,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes, YK genes
95% different in muscle and intestin
C08F8.5 C08F8.5 P W All gene names: fbxb-9; C08F8.5; 4L924; CE05252; WBGene00007447; WP:CE05252 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
Member of lists ( lists):
mount09, R=0.16, PJRPAPER-Chromosome
IV Genes, PJRPAPER-Muslce (L1) negative controls-2,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG IV [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C08F8.6 C08F8.6 P W All gene names: C08F8.6; 4L926; CE05253; WBGene00007448; WP:CE05253 WormBase description: serine/threonine kinase
Member of lists ( lists):
mount04, R=0.41, male99,
Male-enriched, PJ 1235 intestine-sepcific, PJ 2378
IntestineMusclettest0.01, PJ 3085 intestinal genes, PJ
3118 intestinal genes, PJ 4212
IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJRPAPER-Casein Kinases, PJRPAPER-Chromosome IV
Genes, PJRPAPER-Male Genes, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Serine/Threonine Kinases,
PJRPAPER-Sperm Genes, Protein kinases, Proteome Cell
Role (Oct 2000)- Signal Transduction, Proteome Funct
Class (Mar 2000)-Protein Kinase, Proteome LG IV [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Sperm-enriched, Valerie Reinke's 11927
genes
C09B8.1 C09B8.1 P W All gene names: ipp-5; C09B8.1; CE30857; NM_076607; WBGene00002146; WP:CE30857; XG651 WormBase description: ipp-5 encodes a type I inositol 5-phosphatase homolog; ipp-5 acts downstream of let-23 to negatively regulate IP3 signaling and is involved in spermathecal contractions during ovulation; an ipp-5::gfp transcriptional reporter is expressed in the adult distal spermatheca and weakly in the proximal sheath.
Member of lists ( lists):
mount01, R=0.15, daf-2 1384 min,
daf-2 1384 InAgingSetMin3ClusterA, PJRPAPER-Chromosome
X Genes, PJRPAPER-Other Phosphotases, Proteome Cell
Role (Oct 2000)- Genes of Unknown Ce, Proteome Funct
Class (Mar 2000)-Other Phosphotases, Proteome LG X [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes
C09B9.2 C09B9.2 P W All gene names: C09B9.2; 4F795; CE06794; WBGene00015627; WP:CE06794
Member of lists ( lists):
mount04, R=0.41, Male-enriched,
Peter's Neuro (95; 06-18-01), Peter's Neuro (99;
06-18-01), PJRPAPER-Chromosome IV Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Sperm Genes, Proteome Cell Role (Oct 2000)-
Genes of Unknown Ce, Proteome LG IV [May 2002], Reinke
et al 2004, list of genes in cluster order, rosetta,
Sperm-enriched, Valerie Reinke's 11927 genes
C09B9.4 C09B9.4 P W All gene names: C09B9.4; 4F796; CE06796; WBGene00015629; WP:CE06796 WormBase description: ser/thr protein kinase
Member of lists ( lists):
mount04, R=0.41, Male-enriched,
PJRPAPER-Casein Kinases, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Muslce (L1) negative controls-2,
PJRPAPER-Serine/Threonine Kinases, Protein kinases,
Proteome Cell Role (Oct 2000)- Protein Modificatio,
Proteome Cell Role (Oct 2000)- Signal Transduction,
Proteome Funct Class (Mar 2000)-Transferase, Proteome
Funct Class (Mar 2000)-Protein Kinase, Proteome LG IV
[May 2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Valerie Reinke's 11927 genes, wmyst, YK
genes 95% different in muscle and intestin
C09B9.6 C09B9.6 P W All gene names: msp-55; C09B9.6; 4F820; CE06798; NM_068310; WBGene00003448; WP:CE06798 WormBase description: msp-55 encodes a member of the major sperm protein family. WormBase CDS description: major sperm protein
Member of lists ( lists):
771-Egg-99-min, mount04, R=0.41, Cell
Structure, Highly regulated #2, Highly regulated genes,
josh laura1/2 common, Male-enriched, MSP genes, PJ
1158IntestineMuscleTTEST0.001, PJ 1235
intestine-sepcific, PJ 2378 IntestineMusclettest0.01,
PJ 3085 intestinal genes, PJ 3118 intestinal genes, PJ
4212 IntestineMuscleTtest0.05, PJ 4746 intestinal gene
Con95, PJ No8 First 1500, PJ No10-1-R15 First 1500, PJ
No10-1-R16 First 1500, PJRPAPER-Chromosome IV Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Sperm Genes, Proteome
Cell Role (Oct 2000)- Cell Structure, Proteome Funct
Class (Mar 2000)-Structural Protein, Proteome LG IV
[May 2002], Proteome Localization (Oct
2000)-Cytoplasmic, Reinke et al 2004, list of genes in
cluster order, rosetta, Sperm-enriched, Valerie
Reinke's 11927 genes, YK genes 95% different in muscle
and intestin
C09D1.1 C09D1.1 P W All gene names: phm-1; unc-89; C09D1.1; 1E657; CE30426; CE34251; CE34252; CE37701; CE37702; CE37703; CE37704; WBGene00006820; WP:CE30426; WP:CE34251; WP:CE34252; WP:CE37701; WP:CE37702; WP:CE37703; WP:CE37704 WormBase description: protein kinase
Member of lists ( lists):
mount01, R=0.15, FP 464 Muscle
specific genes, Fraser's Complete RNAi List, Fraser's
UNC list, GD-Chol NSD/AMB, GD-GABA Up (Anova/TTest),
GD-L1 Muscle Genes, GDPAPER-Prelim Mixed Muscle, JW
1703 merged Peters zMuscle 8-02, Peter's Acetyl-P001
Superset, Peter's All Muscle Genes (1 16 01), Peter's
L1 Muscle Genes (95 Con; 02-01-01), Peter's L2 Muscle
(95 Con; 02-01-01), Peter's
Musc-non-neuro(sp&enri;fr99.9 Superset), Peter's
Superset of L1-L2 Genes (considering 99.9, Peter's
UP-Reg Muscle (10 25 00), PJ 82 Muscle-sepcific, PJ
4212 IntestineMuscleTtest0.05, PJ negative control,
PJRPAPER-1329 L1 Muscle Genes (Chromo I), PJRPAPER-1329
L1 Muscle List (genes without 1, PJRPAPER-Cholin
Superset, PJRPAPER-Chromosome I Genes, PJRPAPER-L1
Muscle Genes (95), PJRPAPER-L1 Muscle Genes (1364),
PJRPAPER-Muscle Positive Controls, PJRPAPER-zL1 Muscle
Genes, PJRPAPER-zL1vL2 nsd, PJRPAPER-zU29WLev nsd,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin,
YK muscle-specific genes
C09D4.2 C09D4.2 P W All gene names: C09D4.2; 1G59; CE08031; WBGene00015633; WP:CE08031
Member of lists ( lists):
mount08, R=0.21, Art-1-7,
GDPAPER-Prelim Mixed Muscle, josh laura1/2 common, JW
Dauer Enriched AdjT0 vs AdjT12, Peter's All Muscle
Genes (1 16 01), Peter's Neuro (95; 06-18-01), Peter's
Neuro (99; 06-18-01), Peter's UP-Reg Muscle (10 25 00),
PJ No5 first 1500, PJRPAPER-Chromosome I Genes,
Proteome Cell Role (Oct 2000)- Genes of Unknown Ce,
Proteome LG I [May 2002], Reinke et al 2004, list of
genes in cluster order, rosetta, Valerie Reinke's 11927
genes
C09D4.3 C09D4.3 P W All gene names: C09D4.3; 1G57; CE27672; WBGene00015634; WP:CE27672 WormBase description: SER/THR protein kinase
Member of lists ( lists):
mount04, R=0.41, male99,
Male-enriched, PJ 2378 IntestineMusclettest0.01, PJ
4212 IntestineMuscleTtest0.05, PJRPAPER-Casein Kinases,
PJRPAPER-Chromosome I Genes, PJRPAPER-Male Genes,
PJRPAPER-Muscle negative controls, PJRPAPER-Muslce (L1)
negative controls-2, PJRPAPER-Serine/Threonine Kinases,
PJRPAPER-Sperm Genes, Protein kinases, Proteome Cell
Role (Oct 2000)- Signal Transduction, Proteome Funct
Class (Mar 2000)-Protein Kinase, Proteome LG I [May
2002], Reinke et al 2004, list of genes in cluster
order, rosetta, Sperm-enriched, Valerie Reinke's 11927
genes, YK genes 95% different in muscle and intestin
C09E8.1 C09E8.1 P W All gene names: