Wang et al 2003 S4 Dauer Enriched, 513 genes Gene list file name: Wang2003.S4_DauerEnrichedList.txt Type of gene identifier: MA primer pair (sjj) Description: Wang et al 2003 Supplement4: Dauer Enriched Organism: Caenorhabditis elegans (nematode) Gene list type: Experimental Gene name Source Gene ID All gene names WormBase description WormBase CDS description Proteome description Member of lists (Publications) Other annotations 6R55.1 6R55.1 6R55.1; CE19652; CE26787; WBGene00007068; WP:CE19652; WP:CE26787; XS331 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 AH6.2 AH6.2 AH6.2; 2J804; CE01456; WBGene00007080; WP:CE01456 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, spermatogenesis enriched genes, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, list of genes in cluster D, Reinke et al 2004, shared sperm, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched B0213.10 B0213.10 cyp-34A5; B0213.10; 5E430; CE16781; NM_071698; WBGene00015040; WP:CE16781 cytochrome P450 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0213.15 B0213.15 ccp-34A9; cyp-34A9; dod-16; B0213.15; 5E446; CE30582; CE39545; CE39546; NM_071702; WBGene00015044; WP:CE30582; WP:CE39545; WP:CE39546 cytochrome P450 Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0213.2 B0213.2 nlp-27; B0213.2; 5E467; CE16773; NM_071710; WBGene00003765; WP:CE16773 nlp-27 encodes a predicted neuropeptide with homology to C. elegans nlp-28 through nlp-31. Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0222.5 B0222.5 B0222.5; 5J634; CE06696; WBGene00015056; WP:CE06696 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0238.7 B0238.7 B0238.7; 5F736; CE07697; WBGene00015071; WP:CE07697 carboxylesterase Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched B0334.1 B0334.1 B0334.1; B0334.1.1; B0334.1.2; 2L776; CE02932; WBGene00007142; WP:CE02932 Transthyretin-like family Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0334.2 B0334.2 twk-5; B0334.2; 2L774; CE36421; CE37874; WBGene00006660; WP:CE36421; WP:CE37874 Node #40::twk-1/B0334.2 Member of the 4 TM potassium channel protein family ::LG 2(11474051)::B0334.2::27429 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0361.4 B0361.4 B0361.4; 3I361; CE38768; WBGene00015158; WP:CE38768 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0361.5 B0361.5 psd-1; B0361.5; 3I360; CE37076; CE37696; WBGene00015159; WP:CE37076; WP:CE37696 Phosphatidylserine decarboxylase McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0361.9 B0361.9 B0361.9; 3I388; CE00838; WBGene00015163; WP:CE00838 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0478.3 B0478.3 B0478.3; 4H728; CE06711; WBGene00015202; WP:CE06711 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 B0546.1 B0546.1 B0546.1; B0546.1.1; B0546.1.2; B0546.1.3; 4E151; CE16792; WBGene00015248; WP:CE16792 ATPase inhibitor ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C01G5.6 C01G5.6 C01G5.6; 4H289; CE23513; WBGene00015308; WP:CE23513 McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C01G6.7 C01G6.7 C01G6.7; 2J583; CE00869; WBGene00007228; WP:CE00869 4-coumarate-coA ligase Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, list of genes in cluster D, Reinke et al 2004, GO categories, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C02F12.5 C02F12.5 C02F12.5; CE27051; WBGene00015355; WP:CE27051; XE290 homeobox; tissue factor pathway inhibitor Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C02F5.7 C02F5.7 C02F5.7; C02F5.7a.1; C02F5.7a.2; C02F5.7a.3; C02F5.7a.4; C02F5.7b.1; C02F5.7b.2; C30A5.1; CE24780; CE30418; NM_171210; NM_171211; WBGene00015350; WP:CE24780; WP:CE30418 Node #41::C02F5.7/C30A5.1 Member of the F-box domain protein family ::LG 3(7670137)::C02F5.7::23342 McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C03A7.12 C03A7.12 C03A7.12; 5F656; CE29019; WBGene00015370; WP:CE29019 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C03F11.1 C03F11.1 C03F11.1; CE03913; WBGene00015387; WP:CE03913; XG9 noninactivating potassium channel (weak) Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C03H5.4 C03H5.4 C03H5.4; 2A667; CE07897; WBGene00015406; WP:CE07897 phospholipase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C04A11.1 C04A11.1 C04A11.1; CE23516; WBGene00007285; WP:CE23516; XO281 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C04C3.2 C04C3.2 C04C3.2; 4E181; CE29558; WBGene00015412; WP:CE29558 channel protein Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C04F6.1 C04F6.1 vit-5; C04F6.1; CE03921; NM_076188; WBGene00006929; WP:CE03921; XE27 Node #44::vit-5/C04F6.1 170 kDa yolk protein ::LG X(3153477)::C04F6.1::22849 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Murphy et al 2003 Fig2 Class2 shorten lifespan, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C04H5.3 C04H5.4, C04H5.5 gcy-29; C04H5.3; 2O828; CE32791; WBGene00007314; WP:CE32791 Node #36::C04H5.4/C04H5.4A Protein with a cytoplasmic receptor tyrosine kinase domain, has strong similarity to human natruiretic peptide receptor NPR1 and photoreceptor-specific membrane retina guanylyl cyclase RetGC-2 ::LG 2(14319701)::C04H5.4::48365 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C05C12.6 C05C12.6 C05C12.6; 4L996; CE02969; WBGene00007338; WP:CE02969 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C05E11.1 C05E11.1 C05E11.1; CE29561; WBGene00015492; WP:CE29561; XF209 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C05E11.6 C05E11.6 C05E11.6; CE35383; WBGene00015495; WP:CE35383; XF179 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C05E4.3 C05E4.3 C05E4.3; 5B233; CE07937; NM_070914; WBGene00005642; WP:CE07937 srp-1 encodes an ovalbumin-like serpin (ov-serpin) member of the serine protease inhibitor superfamily; by homology, SRP-1 is predicted to function as a suicide substrate that inhibits the proteolytic activity of serine proteases; however, as loss of srp-1 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of SRP-1 in C. elegans development and/or behavior is not yet known. serine protease inhibitor Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C05E7.3 C05E7.3 C05E7.3; CE34154; WBGene00007345; WP:CE34154; XN564 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C06B3.6 C06B3.6 C06B3.6; 5O390; CE07963; WBGene00007365; WP:CE07963 Kwon et al 2004 T1 late-induction Ethanol-response, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C06E8.3 C06E8.3 prk-1; C06E8.3; 3I91; CE29027; CE29028; CE30484; NM_066126; NM_066127; NM_171179; WBGene00004182; WP:CE29027; WP:CE29028; WP:CE30484 Node #37::prk-1/C06E8.3 Serine/threonine protein kinase with similarity to human PIM2 proto-oncogene ::LG 3(6454907)::C06E8.3::22886 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C06G3.3 C06G3.3 C06G3.3; 4H801; CE07979; WBGene00015549; WP:CE07979 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C06G4.4 C06G4.4 C06G4.4; 3J64; CE00549; WBGene00015558; WP:CE00549 Reinke et al 2004, mixed sperm soma, Reinke et al 2004, fem3 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C06G8.1 C06G8.1 C06G8.1; 4L544; CE05229; WBGene00007384; WP:CE05229 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C07B5.3 C07B5.3 C07B5.3; CE00893; WBGene00007408; WP:CE00893; XK140 Jones et al 2001 Dauer specific genes P<0.05, Lund et al 2002 Fig4 Mount 15, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 C07F11.2 C07F11.D C07F11.2; 1A895; CE23528; WBGene00015570; WP:CE23528 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C08D8.1 C08D8.1#2 C08D8.1; 5I827; CE03976; WBGene00015592; WP:CE03976 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C08H9.13 C08H9.13 C08H9.13; 2K156; CE02998; WBGene00007472; WP:CE02998 chitinase ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C08H9.14 C08H9.14 C08H9.14; 2K162; CE02999; WBGene00007473; WP:CE02999 chitinase ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S6 removed genes of contamination, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C08H9.6 C08H9.6 C08H9.6; 2K164; CE02992; WBGene00007466; WP:CE02992 chitinase Jones et al 2001 Dauer specific genes P<0.05, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 C09H10.8 C09H10.8#2 C09H10.8; 2L400; CE35828; WBGene00007502; WP:CE35828 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C10C6.5 C10C6.5 C10C6.5; C10C6.5.1; C10C6.5.2; 4M237; CE28537; WBGene00007513; WP:CE28537 ATP binding transport protein Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C10F3.4 C10F3.4 C10F3.4; 5G449; CE30723; CE37609; WBGene00015678; WP:CE30723; WP:CE37609 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C10H11.4 C10H11.4 ugt-28; C10H11.4; 1F297; CE08093; WBGene00015693; WP:CE08093 7TM chemoreceptor, ugt family Kwon et al 2004 T1 late-induction Ethanol-response, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C10H11.5 C10H11.5 ugt-27; C10H11.5; 1F293; CE08094; WBGene00015694; WP:CE08094 7TM chemoreceptor, ugt family Jones et al 2001 Dauer specific genes P<0.05, Romagnolo et al 2002 Fig3b Detoxification, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 C11E4.1 8C11E4.1 C11E4.1; CE31410; WBGene00007516; WP:CE31410; XK203 glutathione peroxidase Jones et al 2001 T2 lifespan and Dauer, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C11E4.2 C11E4.2 C11E4.2; CE08102; WBGene00007517; WP:CE08102; XK205 glutathione peroxidase Jones et al 2001 T2 lifespan and Dauer, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C12D5.2 C12D5.2 nhr-152; C12D5.2; 5I169; CE35230; WBGene00015705; WP:CE35230 Node #41::C12D5.2 Member of the nuclear hormone receptor/Zinc finger protein family ::LG 5(7671593)::C12D5.2::27022 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C12D8.10 AKT-1, #2, AKT-1B, #2 akt-1; akt-1a; akt-1b; C12D8.10; C12D8.10b.1; C12D8.10b.2; 5K731; CE05274; CE15612; CE31304; WBGene00000102; WP:CE05274; WP:CE15612; WP:CE31304 akt-1 encodes an ortholog of serine/threonine kinase Akt/PKB; akt-1 genetically interacts with the insulin signaling pathway and is widely expressed; two alleles of akt-1 (sa573 and sa700) have a Daf-c mutant phenotype at 27 degrees C (Hid phenotype). Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C12D8.4 C12D8.4 C12D8.4; 5K706; CE05268; WBGene00007535; WP:CE05268 Transthyretin-like family Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C13C4.6 C13C4.6 C13C4.6; 5M603; CE08131; WBGene00007550; WP:CE08131 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C13G3.1 C13G3.1 C13G3.1; 5L492; CE05277; WBGene00007553; WP:CE05277 Kwon et al 2004 T1 late-induction Ethanol-response, Lund et al 2002 Fig4 Mount 15, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C14F11.5 C14F11.5 hsp-43; C14F11.5; CE03986; HSP43; NM_076644; WBGene00002024; WP:CE03986; XG852 Node #38::C14F11.5/hsp43 Protein with similarity to members of the Hsp20 family of small heat shock proteins, has similarity to human alpha crystallins CRYAB and CRYAA ::LG X(5985239)::C14F11.5::23528 heat shock protein Reinke et al 2004, list of genes in cluster order, Romagnolo et al 2002 Fig2a heat shock, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C16C4.1 C16C4.1 C16C4.1; 2C157; CE36788; WBGene00015825; WP:CE36788 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C16C8.4 C16C8.4 C16C8.4; 2D734; CE08215; WBGene00015842; WP:CE08215 Kwon et al 2004 T1 late-induction Ethanol-response, Lund et al 2002 Fig3C Germline-intrinsic, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C17B7.2 C17B7.2 C17B7.2; 5D829; CE16850; WBGene00015876; WP:CE16850 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C17C3.3 C17C3.3 C17C3.3; 2F853; CE34698; WBGene00015889; WP:CE34698 Romagnolo et al 2002 Fig3b Metabolism, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C17G1.3 C17G1.3 ugt-23; C17G1.3; CE08282; WBGene00007650; WP:CE08282; XK542 UDP-glucosyltransferase Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C18A11.1 C18A11.1 C18A11.1; CE04032; WBGene00015947; WP:CE04032; XI687 Lund et al 2002 Fig4 Mount 15, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C18B12.2 5C18B12.2 C18B12.2; CE23557; WBGene00007664; WP:CE23557; XP649 7 transmembrane receptor (Secretin family) Lund et al 2002 Fig1 aging-regulated genes, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C18D4.4 C18D4.4 C18D4.4; 5S8; CE15634; WBGene00007674; WP:CE15634 Jones et al 2001 Dauer specific genes P<0.05, Lund et al 2002 Fig4 Mount 15, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 C18E9.1 C18E9.1 cal-2; C18E9.1; 2J251; CE34702; NM_063505; WBGene00000286; WP:CE34702 cal-2 encodes a calmodulin homolog required for embryonic development or viability; CAL-2 is closely similar to its paralogs CAL-1, CAL-3, CAL-4 and CMD-1. calmodulin Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C18H7.1 C05G6.3 C18H7.1; C18H7.1.1; C18H7.1.2; 4B373; CE27718; WBGene00015993; WP:CE27718 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S6 removed genes of contamination, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C18H9.5 C18H9.5 C18H9.5; 2G984; CE01805; WBGene00016003; WP:CE01805 sodium/phosphate transport protein Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C18H9.6 C18H9.6 C18H9.6; 2G990; CE39324; WBGene00016004; WP:CE39324 Kwon et al 2004 T1 late-induction Ethanol-response, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C23H3.7 C23H3.7 tre-5; C23H3.7; 2A344; CE31312; NM_061248; WBGene00006611; WP:CE31312; tre5 trehalase ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C24A11.1 C24A11.1 C24A11.1; 1F971; CE20521; WBGene00016040; WP:CE20521 Reinke et al 2004, herm sperm, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, spermatogenesis enriched genes, Reinke et al 2004, fem3 enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C24A11.8 C24A11.6 frm-4; C24A11.8; 1F972; CE19698; CE27724; NM_059185; NM_059186; WBGene00001491; WP:CE19698; WP:CE27724 frm-4 encodes a predicted transmembrane protein that contains an N-terminal FERM (Band 4.1-ezrin-radixin-moesin) domain; by homology, FRM-4 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures; however, as loss of frm-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-4 in C. elegans development and/or behavior is not yet known. Lund et al 2002 Fig4 Mount 15, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C24B9.9 C24B9.9 dod-3; C24B9.9; 5D208; CE17451; NM_071341; WBGene00016052; WP:CE17451 Kwon et al 2004 T1 late-repression Ethanol-respon, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, IVb male soma enriched genes, Shen et al 2005 T1 hif-1 depend hypoxia, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C24G7.4 C24G7.4 C24G7.4; 1E667; CE08354; WBGene00016066; WP:CE08354 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C25B8.3 C25B8.3 cpr-6; C25B8.3; CE04078; CE30876; NM_171708; WBGene00000786; WP:CE04078; WP:CE30876; XH227 Node #36::cpr-6/C25B8.3 Member of the Cathepsin B-like Cysteine Protease family ::LG X(6350939)::C25B8.3::23036 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C25E10.2 C25E10.2 cyp-33B1; C25E10.2; 5J521; CE35248; NM_072941; WBGene00016092; WP:CE35248 cytochrome P450 Menzel et al 2001 T3 CYP genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C25E10.8 C25E10.8 C25E10.8; 5J528; CE06870; WBGene00016097; WP:CE06870 Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C25H3.10 C25H3.10 C25H3.10; 2F988; CE27090; CE37612; WBGene00016119; WP:CE27090; WP:CE37612 Jones et al 2001 Dauer specific genes P<0.05, Kwon et al 2004 T1 late-repression Ethanol-respon, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Romagnolo et al 2002 Fig3b Unkown, Romagnolo et al 2002 Fig5 genes in let-60 timecour, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C26F1.10 C26F1.10 flp-21; C26F1.10; C26F1.10.1; C26F1.10.2; 5I273; CE30733; NM_072610; WBGene00001464; WP:CE30733 flp-21 encodes a single FMRFamide-related neuropeptide (FaRP) that serves as a ligand for NPR-1, a G protein-coupled receptor that regulates social versus solitary feeding behavior in several Caenorhabditis species; genetic analysis suggests that FLP-21 acts through NPR-1 to inhibit social feeding behavior; FLP-21 is expressed in the ADL, ASE and ASH sensory neurons, the URA motor neurons, the MC, M2 and M4 pharyngeal neurons, and the intestine; flp-21 encodes the only FMRFamide-related neuropeptide (FaRP) encoded by the C. elegans genome that activates both the social (215F) and the solitary (215V) forms of NPR-1 in both Xenopus oocytes and pharyngeal assays. Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C27D9.2 C27D9.2 C27D9.2; 2F46; CE32313; WBGene00016164; WP:CE32313 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C27H5.4 C27H5.4 C27H5.4; 2H454; CE27100; CE34714; WBGene00016174; WP:CE27100; WP:CE34714 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C28H8.6 C28H8.6 tag-327; C28H8.6; 3G980; CE01828; CE37096; WBGene00016197; WP:CE01828; WP:CE37096 LIM domains McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C29F5.7 2C29F5.7, C29F5.7 C29F5.7; 2G596; CE02514; WBGene00016215; WP:CE02514 Jones et al 2001 Dauer specific genes P<0.05, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 C29G2.6 C29G2.6 C29G2.6; 5D58; CE08467; WBGene00016234; WP:CE08467 Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C31B8.4 C31B8.4 C31B8.4; 5D373; CE08484; WBGene00016281; WP:CE08484 Lund et al 2002 Fig1 aging-regulated genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C31C9.2 C31C9.2 C31C9.2; C31C9.2.1; C31C9.2.2; 2N928; CE08497; WBGene00007836; WP:CE08497 C31C9.2 is orthologous to the human gene PHOSPHOGLYCERATE DEHYDROGENASE (PHGDH; OMIM:606879), which when mutated leads to phosphoglycerate dehydrogenase deficiency. D-3-Phosphoglycerate dehydrogenase Jones et al 2001 Non dauer genes P<0.05, McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C31H5.4 C31H5.4 C31H5.4; C31H5.4.1; C31H5.4.2; 1J618; CE17484; NM_060029; WBGene00007855; WP:CE17484 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C32C4.2 C32C4.2 aqp-6; C32C4.2; 5L131; CE05345; NM_073326; WBGene00000174; WP:CE05345 MIP protein McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C33A12.7 C33A12.7 C33A12.7; 4K272; CE15664; WBGene00007886; WP:CE15664 Jones et al 2001 Dauer specific genes P<0.05, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C33D9.3 C33D9.3 C33D9.3; 4J556; CE33758; CE33759; WBGene00007898; WP:CE33758; WP:CE33759 Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 C34C6.7 C34C6.7 C34C6.7; 2I997; CE03055; WBGene00007919; WP:CE03055 Lund et al 2002 Fig1 aging-regulated genes, Lund et al 2002 Fig4 Mount 15, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C34D1.1 C34D1.1 C34D1.1; 5N704; CE08569; WBGene00007929; WP:CE08569 DM DNA binding domain Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C34D1.4 C34D1.4 C34D1.4; 5N738; CE23568; WBGene00007931; WP:CE23568 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C34E7.1 C34E7.2 pqn-18; C34E7.1; C34E7.1.1; C34E7.1.2; CE36355; NM_077745; WBGene00004108; WP:CE36355; XN537 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C35A5.2 C35A5.2 ugt-33; C35A5.2; 5K975; CE31329; WBGene00007946; WP:CE31329 UDP-glucuronosyltransferase Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, list of genes in cluster C, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C35C5.9 C35C5.9 C35C5.9; CE31437; WBGene00007958; WP:CE31437; XM155 Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C36A4.1 C36A4.1 cyp-25A1; C36A4.1; 3E921; CE37711; NM_065374; WBGene00007963; WP:CE37711 cytochrome P450 McCarroll et al 2004 SFig5 conserved w/ yeast, Menzel et al 2001 T3 CYP genes, ReichertK et al 2005 T3 xenobiotic downregulated, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C36B7.7 C36B7.7 hen-1; C36B7.7; CE04178; NM_076799; WBGene00001841; WP:CE04178; XH732 hen-1 encodes a secretory protein that contains a low-density lipoprotein receptor class A domain and affects integration of sensory stimuli and behavioral plasticity; expressed in pharyngeal muscles, the vulva, and is weakly expressed in a subset of neurons. ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C37A5.2 C37A5.2 C37A5.2; 1O749; CE17529; WBGene00007989; WP:CE17529 Lund et al 2002 Fig4 Mount 15, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C37A5.4 C37A5.4 C37A5.4; 1O746; CE17530; WBGene00007990; WP:CE17530 Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C37C3.4 C37C3.4 grd-8; C37C3.4; 5I323; CE34270; NM_072619; WBGene00001697; WP:CE34270 Node #41::grd-8/C37C3.4 Protein of unknown function, has moderate similarity to C. elegans GRD-6 ::LG 5(7828335)::C37C3.4::27071 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C37C3.8 C37C3.8 tag-253; C37C3.8; C37C3.8a.1; C37C3.8a.2; C37C3.8a.3; C37C3.8a.4; 5I326; CE06933; CE30736; WBGene00016500; WP:CE06933; WP:CE30736 McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C37H5.2 C37H5.2 C37H5.2; 5F327; CE30737; WBGene00016506; WP:CE30737 Kwon et al 2004 T1 late-induction Ethanol-response, Lund et al 2002 Fig4 Mount 15, Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C37H5.3 C37H5.3 C37H5.3; 5F325; CE08627; CE32824; WBGene00016507; WP:CE08627; WP:CE32824 Kwon et al 2004 T1 late-induction Ethanol-response, McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, IVb male soma enriched genes, Reinke et al 2004, mixed sperm soma, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C38C10.1 C38C10.1 C38C10.1; 3K479; CE00104; NM_066663; WBGene00006576; WP:CE00104 tkr-1 encodes a G protein-coupled receptor that is the C. elegans tachykinin-like neuropeptide receptor homolog; by homology, TKR-1 is predicted to function in modulation of excitatory neurotransmission; as loss of tkr-1 activity via RNAi results in moderate reduction of fat content, TKR-1 may play a specific role in regulating lipid metabolism; a tkr-1 reporter gene fusion is reportedly expressed in the socket cells of the deirid and post-deirid sensilla from the L2 larval stage through adulthood. G protein coupled receptor Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C38C3.4 C38C3.4 C38C3.4; 5B961; CE30257; CE35255; WBGene00016513; WP:CE30257; WP:CE35255 Node #38::C38C3.4 Serine/threonine protein kinase of the casein kinase I subfamily, has similarity to S. cerevisiae Yck1p and Yck2p casein kinase I isoforms ::LG 5(1421962)::C38C3.4::27961 Romagnolo et al 2002 Fig3b signaling, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C39D10.2 C39D10.2 C39D10.2; CE04181; WBGene00016530; WP:CE04181; XI509 Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Reinke et al 2004, GO categories, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C39E9.5 C39E9.5 C39E9.5; 4N835; CE05388; WBGene00008029; WP:CE05388 testis-specific protein TPX-1 like McCarroll et al 2004 SFig5 conserved w/ yeast, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C40C9.3 C40C9.3 C40C9.3; CE05400; WBGene00008036; WP:CE05400; XO267 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C41C4.5 C41C4.5 unc-105; C41C4.5; C41C4.5.1; C41C4.5.2; 2I411; CE23585; NM_063301; WBGene00006832; WP:CE23585 Node #41::unc-105/C41C4.5 Member of the amiloride-sensitive sodium channel family, the degenerin family and DEG/ENaC superfamily of proteins ::LG 2(8109907)::C41C4.5::21580 Amiloride-sensitive sodium channel Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Romagnolo et al 2002 Fig3b Transporters, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C41G6.13 C41G6.13 C41G6.13; 5P689; CE17539; WBGene00008059; WP:CE17539 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C42D4.2 C42D4.2 C42D4.2; 4H947; CE34747; WBGene00016595; WP:CE34747 esterase ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C42D8.1 C42D8.1 C42D8.1; CE39693; WBGene00016599; WP:CE39693; XF729 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C43G2.1 C43G2.1 C43G2.1; C43G2.1.1; C43G2.1.2; C43G2.1.3; 4H318; CE27848; WBGene00016610; WP:CE27848 McCarroll et al 2004 SFig5 conserved w/ yeast, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C44E12.1 C44E12.2 C44E12.1; CE27852; WBGene00016657; WP:CE27852; XI217 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C45H4.17 C45H4.17 cyp-33C2; C45H4.17; Y5H2B.F; 5C663; CE25818; NM_071193; WBGene00016697; WP:CE25818 cytochrome P450 Menzel et al 2001 T3 CYP genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C46E1.1 C46E1.1 C46E1.1; CE17556; WBGene00008115; WP:CE17556; XQ89 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C46F4.1 C46F4.1 C46F4.1; CE04219; WBGene00016715; WP:CE04219; XG555 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C46F4.2 C46F4.2 acs-17; dod-9; C46F4.2; C46F4.2.1; C46F4.2.2; CE30907; NM_076592; WBGene00016716; WP:CE30907; XG556 long-chain-fatty-acid coA ligase McCarroll et al 2004 SFig5 conserved w/ yeast, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C47E8.3 C47E8.3 C47E8.3; 5P161; CE05439; WBGene00008142; WP:CE05439 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C49F8.1 C49F8.1 C49F8.1; CE05456; WBGene00008213; WP:CE05456; XN978 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C49G7.10 C49G7.10 C49G7.10; 5E512; CE08868; WBGene00016788; WP:CE08868 Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C49G7.5 C49G7.5 C49G7.5; 5E515; CE08863; WBGene00016783; WP:CE08863 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C50A2.2 C50A2.2 C50A2.2; 4B929; CE34275; WBGene00016796; WP:CE34275 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C50F7.10 C50F7.10 C50F7.10; 4I512; CE04248; WBGene00016848; WP:CE04248 glycosyl hydrolase Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C51E3.6 C51E3.6 C51E3.6; 5K638; CE08939; WBGene00008252; WP:CE08939 Mouse YSPL-1 protein like ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C52B9.7 C52B9.7 paf-2; C52B9.7; CE30264; CE30265; NM_171668; WBGene00003907; WP:CE30264; WP:CE30265; XE910 paf-2 encodes a homolog of vertebrate Type II Platelet-activating factor-acetylhydrolase (PAF-AH) that is 70% identical to PAF-2 that is required for embryogenesis and affects organization of the hypodermis. ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C52D10.1 C52D10.1 C52D10.1; 4S131; CE17586; WBGene00016875; WP:CE17586 Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C52D10.2 C52D10.2#2 C52D10.2; CE17587; WBGene00016876; WP:CE17587 Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C52D10.3 C52D10.3 C52D10.3; CE36281; WBGene00016877; WP:CE36281 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, list of genes in cluster B, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C52E2.2 C52E2.H C52E2.2; C52E2.H; 2C125b; CE20597; WBGene00016881; WP:CE20597 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C53B7.5 C53B7.5 odr-10; C53B7.5; CE26361; NM_076756; WBGene00003856; WP:CE26361; XH484 Node #42::odr-10/C53B7.5 G protein-coupled receptor involved in odorant response, member of large family of putative odorant response proteins, no homolog found in human or D. melanogaster ::LG X(6608085)::C53B7.5::23881 chemoreceptor ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C53D5.2 C53D5.G C53D5.2; 1A759; CE34279; WBGene00016903; WP:CE34279 Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C53D6.7 C53D6.7 C53D6.7; 4J798; CE36991; WBGene00008284; WP:CE36991 galactoside-binding lectin like Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C54D10.10 C54D10.10 C54D10.10; 5M926; CE05506; WBGene00008304; WP:CE05506 serine protease inhibitor Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C54D2.2 C54D2.2 C54D2.2; CE02559; WBGene00016916; WP:CE02559; XI457 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C54F6.5 C54F6.5 C54F6.5; 5I7; CE39707; WBGene00016923; WP:CE39707 Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 C55A6.6 C55A6.6 C55A6.6; 5L994; CE09003; WBGene00008335; WP:CE09003 Node #42::C55A6.6 Member of the alcohol/ribitol dehydrogenase-like protein family ::LG 5(11462892)::C55A6.6::23900 Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched C55F2.1 C55F2.1 C55F2.1; C55F2.1b.1; C55F2.1b.2; 4I663; CE33606; CE35845; CE37714; WBGene00016957; WP:CE33606; WP:CE35845; WP:CE37714 Node #36::C55F2.1 Member of the 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) transformylase/IMP cyclohydrolase protein family ::LG 4(7528993)::C55F2.1::53689 McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 CC4.2 CC4.2 nlp-15; CC4.2; 1N587; CE36118; NM_060877; WBGene00003753; WP:CE36118 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 CC8.2 CC8.A CC8.2; CC8.2a.1; CC8.2a.2; 4E410; CE20615; CE23615; WBGene00016987; WP:CE20615; WP:CE23615 Node #38:: Putative regulatory subunit for serine/threonine protein phosphatases ::LG 4(3621380)::CC8.A::51949 McCarroll et al 2004 SFig5 conserved w/ yeast, Murphy et al 2003 Fig2 Class1 elongate lifespan, Shen et al 2005 T1 hif-1 depend hypoxia, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 D1009.1 D1009.1 D1009.1; CE04285; CE27891; WBGene00017012; WP:CE04285; WP:CE27891; XJ557 fatty acid transporter protein McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 D1009.4 D1009.4 nlp-14; D1009.4; CE04288; NM_077107; WBGene00003752; WP:CE04288; XJ536 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 D1065.1 D1065.1#2 D1065.1; 5E551; CE09051; WBGene00017034; WP:CE09051 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 D1073.1 D1073.1 D1073.1; CE34285; WBGene00017039; WP:CE34285; XJ560 tyrosine-protein kinase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 D1086.5 D1086.5 D1086.5; 5O568; CE09063; WBGene00008392; WP:CE09063 Lund et al 2002 Fig4 Mount 15, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched D2062.1 D2062.1 D2062.1; 2C923; CE09088; WBGene00017055; WP:CE09088 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 DAF-16, #2 DAF-16, #2 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 DH11.2 DH11.2 DH11.2; 2I305; CE27900; WBGene00008436; WP:CE27900 Kwon et al 2004 T1 late-repression Ethanol-respon, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 DH11.3 DH11.3 pgp-11; DH11.3; 2I286; CE34788; NM_063273; WBGene00004005; WP:CE34788 pgp-11 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; pgp-11 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-11 activity via large-scale RNAi screens does not result in any obvious defects, the precise role of pgp-11 in C. elegans development and/or behavior is not yet known; pgp-11 promoter-gfp fusion proteins are expressed in the excretory cell and in the intestine. multidrug resistance protein Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 E01G4.3 E01G4.3 E01G4.3; 2N752; CE09110; WBGene00008446; WP:CE09110 Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched E02A10.3 E02A10.3 E02A10.3; 5N67; CE27751; WBGene00008453; WP:CE27751 calmodulin-like protein Jones et al 2001 Dauer specific genes P<0.05, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 E02C12.4 E02C12.4 E02C12.4; 5J834; CE37217; WBGene00017091; WP:CE37217 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 E04F6.8 E04F6.8 E04F6.8; E04F6.8.1; E04F6.8.2; 2H500; CE01220; WBGene00017127; WP:CE01220 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, fem3 enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 E04F6.9 E04F6.9 E04F6.9; 2H502; CE01221; WBGene00017128; WP:CE01221 Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F01G10.8 F01G10.8 daf-14; F01G10.8; 4L19; CE29090; NM_069479; WBGene00000910; WP:CE29090 Node #38::daf-14/F01G10.8 A divergent member of the Smad family of small signaling molecules involved in dauer larva regulation and several additional processes ::LG 4(9845158)::F01G10.8::21680 Mouse MSMAD protein like Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F02H6.2 F02H6.2 F02H6.2; 4O961; CE17626; WBGene00008535; WP:CE17626 Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F07C3.4 F07C3.4 glo-4; F07C3.4; 5J716; CE38062; WBGene00017195; WP:CE38062 The F07C3.4 gene encodes a guanine-nucleotide releasing factor homolog that is homologous to human RP3. guanine-nucleotide releasing factor Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, list of genes in cluster D, Reinke et al 2004, fem3 enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F07D3.2 F07D3.2 flp-6; F07D3.2; 5J953; CE29252; NM_073043; WBGene00001449; WP:CE29252 Node #42::flp-6/F07D3.2 KSAYMRF-amide neurotransmitter ::LG 5(9420788)::F07D3.2::53605 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F07H5.7 F07H5.7 F07H5.7; 2J84; CE03156; WBGene00008558; WP:CE03156 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F08F1.3 F08F1.3 F08F1.3; CE09250; WBGene00017257; WP:CE09250; XJ49 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F08G2.4 F08G2.4 F08G2.4; 2O121; 2O123; CE19776; WBGene00008576; WP:CE19776 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F08G5.3 F08G5.3 F08G5.3; F08G5.3a.1; F08G5.3a.2; 4N178; CE32857; CE35455; WBGene00008582; WP:CE32857; WP:CE35455 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F09A5.3 F09A5.3 F09A5.3; CE03175; WBGene00008600; WP:CE03175; XN771 Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F09C3.2 F09C3.2 F09C3.2; 1O862; CE36126; WBGene00008610; WP:CE36126 This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. haloacid dehalogenase-like hydrolase Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F09F7.1 F09F7.1 F09F7.1; 3G663; CE29258; WBGene00017299; WP:CE29258 Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F09F7.6 F09F7.6 F09F7.6; 3G640; CE01238; WBGene00017303; WP:CE01238 Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F09G2.3 F09G2.3 F09G2.3; 5H667; CE32858; WBGene00017312; WP:CE32858 permease Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, Reinke et al 2004, fem3 enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F10D2.6 F10D2.6 ugt-37; F10D2.6; 5H616; CE30747; WBGene00017332; WP:CE30747 7TM chemoreceptor, ugt family Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F10E7.3 F10E7.3 F10E7.3; 2H417; CE36819; WBGene00017345; WP:CE36819 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F10G2.1 F10G2.1 F10G2.1; 5H813; CE27945; WBGene00017362; WP:CE27945 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F10G2.6 F10G2.6 srx-92; F10G2.6; F10G2.6a.1; F10G2.6a.2; 5H802; CE35273; CE38169; WBGene00005983; WP:CE35273; WP:CE38169 7TM chemoreceptor, srx family ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F11C1.2 F11C1.2 F11C1.2; CE31472; WBGene00008691; WP:CE31472; XN604 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F11G11.1 F11G11.1 gst-8; F11G11.1; 2F175; CE07054; NM_062483; WBGene00001756; WP:CE07054 gst-8 encodes a predicted glutathione S-transferase. glutathione S-transferase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F11G11.2 F11G11.2 gst-7; F11G11.2; 2F173; CE07055; NM_062482; WBGene00001755; WP:CE07055 gst-7 encodes a predicted glutathione S-transferase. glutathione S-transferase ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F12A10.7 F12A10.7 F12A10.7; 2F784; CE39352; WBGene00017396; WP:CE39352 Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F13C5.1 F13C5.1 F13C5.1; CE19383; WBGene00017422; WP:CE19383; XB223 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F13D11.1 F13D11.1 F13D11.1; CE04387; WBGene00017427; WP:CE04387; XG451 histidine acid phosphatase family (weak) Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F13D12.3 F13D12.3#2 F13D12.3; 2M11; CE03197; WBGene00008739; WP:CE03197 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F13D2.2 F13D2.2 F13D2.2; CE03194; WBGene00008736; WP:CE03194; XL801 G-protein coupled receptor ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F13H6.5 F13H6.5 F13H6.5; 5G854; CE09377; WBGene00017433; WP:CE09377 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F14D12.6 F14D12.6 tag-24; F14D12.6; CE35478; CE35479; WBGene00006411; WP:CE35478; WP:CE35479; XG226 G-protein coupled receptor Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F14D7.5 F14D7.5 F14D7.5; 5O780; CE09383; WBGene00008792; WP:CE09383 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F15E6.3 F15E6.3 F15E6.3; 4F59; CE16992; WBGene00017484; WP:CE16992 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F16B4.4 F16B4.4 F16B4.4; 5C73; CE17014; WBGene00017506; WP:CE17014 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F16B4.5 F16B4.5 F16B4.5; 5C69; CE17015; CE27968; WBGene00017507; WP:CE17015; WP:CE27968 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F16B4.7 F16B4.7 F16B4.7; 5C65; CE17017; WBGene00017509; WP:CE17017 Bishop et al 2004 T1 Upregulated in vhl-1 vs WT, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F17A2.7 F17A2.7 srd-45; F17A2.7; CE03217; NM_077663; WBGene00005123; WP:CE03217; XM947 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F17H10.2 F17H10.2 F17H10.2; CE03227; CE39242; WBGene00008926; WP:CE03227; WP:CE39242; XN731 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F18E2.4 F18E2.4 srt-43; F18E2.4; 5N251; CE37826; NM_073793; WBGene00008937; WP:CE37826 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F18E9.2 F18E9.2 nlp-7; F18E9.2; CE02659; NM_077055; WBGene00003745; WP:CE02659; XJ209 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F19F10.1 F19F10.1 F19F10.1; 5I41; CE09481; WBGene00017598; WP:CE09481 DNA-binding protein Jiang et al 2001 Fig1 male-enriched TF, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F19G12.3 F19G12.3 F19G12.3; CE07086; WBGene00017611; WP:CE07086; XC41 Reinke et al 2004, wt herm vs wt herm enriched gen, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F19H8.3 F19H8.3 arl-3; F19H8.3; 2O895; CE15872; NM_064636; WBGene00000188; WP:CE15872 arl-3 encodes a member of the ARL (ADP-ribosylation factor(ARF)-like) family of proteins which are very similar to ARF proteins but lack the ability to stimulate ADP ribosylation by cholera toxin; as loss of arl-3 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of ARL-3 is not yet known. ADP-ribosylation factors (Arf family) (contains ATP/GTP binding P-loop) McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F20A1.10 F20A1.10, F20A1.10#2 F20A1.10; F20A1.10.1; F20A1.10.2; 5H534; CE07100; WBGene00017621; WP:CE07100 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F20D6.8 F20D6.8 F20D6.8; 5I644; CE07112; WBGene00017637; WP:CE07112 RAS-like protein Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F21A3.2 F21A3.2#2 F21A3.2; 5Q12; CE31909; WBGene00008992; WP:CE31909 acid phosphatase McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F21D12.3 F21D12.3 F21D12.3; 2H610; CE32633; WBGene00017663; WP:CE32633 Shen et al 2005 T1 hif-1 depend hypoxia, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F21E9.3 F21E9.3 F21E9.3; CE09527; WBGene00017667; WP:CE09527; XB952 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F21F3.1 F21F3.1 F21F3.1; 1F479; CE32870; WBGene00017671; WP:CE32870 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F21F3.3 F21F3.3 F21F3.3; 1F471; CE09533; WBGene00017673; WP:CE09533 protein-S isoprenylsysteine O-methyltransferase McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, spermatogenesis enriched genes, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, list of genes in cluster D, Reinke et al 2004, shared sperm, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F21F3.6 F21F3.6 F21F3.6; F21F3.6.1; F21F3.6.2; 1F480; CE09536; WBGene00017675; WP:CE09536 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F22B7.7 F22B7.7 twk-8; F22B7.7; 3J722; CE37508; NM_066502; WBGene00006662; WP:CE37508 Node #39::twk-8/F22B7.7 Member of the 4 TM potassium channel protein family ::LG 3(8074833)::F22B7.7::28277 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F22B7.9 F22B7.9 F22B7.9; 3J742; CE29771; WBGene00017698; WP:CE29771 Jones et al 2001 Dauer specific genes P<0.05, Kwon et al 2004 T1 late-repression Ethanol-respon, Lund et al 2002 Fig4 Mount 15, Romagnolo et al 2002 Fig3b Unkown, Romagnolo et al 2002 Fig5 genes in let-60 timecour, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F22D3.2 F22D3.2 F22D3.2; 2H237; CE27138; CE37006; CE37762; WBGene00017699; WP:CE27138; WP:CE37006; WP:CE37762 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F22F7.2 F22F7.2 F22F7.2; CE17692; WBGene00017720; WP:CE17692 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F23F1.6 F23F1.6 F23F1.6; 2A326; CE09606; WBGene00017747; WP:CE09606 amino acid permease Golden et al 2004, N2 vs daf-2 different genes at , Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, Romagnolo et al 2002 Fig3b Transporters, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F23F1.7 F23F1.7 F23F1.7; 2A328; CE29775; WBGene00017748; WP:CE29775 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F25B3.2 F25B3.2 F25B3.2; 5K57; CE05712; WBGene00009099; WP:CE05712 Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F25B5.3 F25B5.3 F25B5.3; F25B5.3c.1; F25B5.3c.2; F25B5.3c.3; F25B5.3c.4; 3H41; CE26890; CE28001; CE29776; CE30663; CE30664; WBGene00017775; WP:CE26890; WP:CE28001; WP:CE29776; WP:CE30663; WP:CE30664 F25B5.3 is orthologous to the human gene NUCLEOTIDASE, 5-PRIME, CYTOSOLIC III (NT5C3; OMIM:606224), which when mutated leads to hemolytic anemia due to UMPH1 deficiency McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F25E5.7 F25E5.7 F25E5.7; 5H923; CE32875; WBGene00017788; WP:CE32875 Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F26A1.8 F26A1.8 F26A1.8; 3F906; CE02689; WBGene00017806; WP:CE02689 Amine oxidase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F26D12.1 F26D12.B fkh-7; F26D12.1; F26D12.A; 4G373; CE36294; CE36295; CE36296; CE36589; WBGene00001439; WP:CE36294; WP:CE36295; WP:CE36296; WP:CE36589 fkh-7 encodes one of 15 forkhead transcriptional regulators encoded by the C. elegans genome; by homology, FKH-7 is predicted to function as a transcription factor that regulates gene expression during development; however, as loss of fkh-7 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of FKH-7 in C. elegans development and/or behavior is not yet known; however, reporter gene studies indicate that fkh-7 expression is detected only in neurons of the head and tail ganglia, the nerve cord, and the male tail, suggesting that FKH-7 likely functions in nervous system differentiation. ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S5 genes common to feeding ANOVA, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F26F12.5 F26F12.5 F26F12.5; 5G344; CE07150; CE32881; WBGene00017836; WP:CE07150; WP:CE32881 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F26G1.2 F26G1.2 F26G1.2; 2F53; CE02694; CE39356; WBGene00017838; WP:CE02694; WP:CE39356 Kwon et al 2004 T1 Class1 rapid-induction Ethanol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F28F5.4 F28F5.4 F28F5.4; CE00791; WBGene00043297; WP:CE00791 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F31D5.2 F31D5.2 F31D5.2; 2E507; CE29782; WBGene00017945; WP:CE29782 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F31D5.3 F31D5.3 tag-149; F31D5.3; 2E497; CE19827; CE19828; CE31797; CE31798; WBGene00006495; WBGene00017946; WP:CE19827; WP:CE19828; WP:CE31797; WP:CE31798 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F32A5.4 F32A5.4 F32A5.4; F32A5.4a.1; F32A5.4a.2; 2H519; CE01274; CE32640; WBGene00017970; WP:CE01274; WP:CE32640 Immunodominant antigen Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F32B6.1 F32B6.1#2 nhr-4; F32B6.1; F32B6.1.1; F32B6.1.2; 4K645; CE24934; NM_069374; WBGene00003603; WP:CE24934 nhr-4 is predicted to encode a nuclear hormone receptor (NHR); expression may peak during the late larval stages, based on mRNA expression analysis. Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains) ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F35B12.2 F35B12.2 dhs-20; F35B12.2; 5M84; CE39496; NM_073540; WBGene00000983; WP:CE39496 dhs-20 encodes a short-chain dehydrogenase predicted to be mitochondrial. retinol dehydrogenase like Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F35B3.4 F35B3.4 F35B3.4; CE07171; WBGene00018031; WP:CE07171; XR632 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F35C12.3 F35C12.3 F35C12.3; F35C12.3b.1; F35C12.3b.2; 1K386; CE09915; CE38339; CE38340; WBGene00009408; WP:CE09915; WP:CE38339; WP:CE38340 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F35C8.6 F35C8.6 pfn-2; F35C8.6; CE39098; NM_076509; WBGene00003990; WP:CE39098; XF972 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F35F10.13 F35F10.13 F35F10.13; 5D796; CE09938; WBGene00018062; WP:CE09938 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F35F10.7 F35F10.7 F35F10.7; 5D760; CE09932; WBGene00018057; WP:CE09932 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F35G12.1 F35G12.1 F35G12.1; 3F656; CE31498; WBGene00009439; WP:CE31498 F35G12.1 is orthologous to the human gene MALONYL-COA DECARBOXYLASE (MLYCD; OMIM:606761), which when mutated leads to disease. malonyl-COA decarboxylase Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F36A4.14 F36A4.14 nhr-78; F36A4.14; 4F40; CE07187; NM_068129; WBGene00003668; WP:CE07187 Node #39::nhr-78/F36A4.14 Member of the zinc finger, C4 type protein family with similarity to nuclear hormone receptors ::LG 4(4196538)::F36A4.14::28422 Roy et al 2002 S3 muscle genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F36D1.5 F36D1.5#2 F36D1.5; 1L857; CE34305; WBGene00009464; WP:CE34305 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F36F2.2 F36F2.2 F36F2.2; 1J593; CE15976; WBGene00009476; WP:CE15976 Lund et al 2002 Fig4 Mount 15, Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F36G9.7 F36G9.7 F36G9.7; 5Q446; CE15984; WBGene00009486; WP:CE15984 Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F37A8.4 F37A8.4 nlp-10; F37A8.4; 3F24; CE00989; NM_065394; WBGene00003748; WP:CE00989 nlp-10 encodes four predicted neuropeptide-like proteins; nlp-10 is part of a GGxY neuropeptide family that has members in several other nematode species; nlp-10 is expressed in a variety of neurons, including ASK, ADL, CAN, two lateral neurons, two anterior pharyngeal neurons, one tail neuron, and one male tail neuron; as loss of nlp-10 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-10-encoded peptides in development and/or behavior is not yet known. Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F38A1.2#2 F38A1.2#2 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F38B7.2 F38B7.2 F38B7.2; 5M23; CE05826; WBGene00009533; WP:CE05826 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Shen et al 2005 T1 hif-1indepen hypoxia, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F38E11.2 F38E11.2 hsp-12.6; hsp-20; F38E11.2; 4K210; CE03294; NM_069267; WBGene00002013; WBGene00002022; WP:CE03294 alpha-B-crystallin Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Kwon et al 2004 T1 transient-induction Ethanol-res, Murphy et al 2003 Fig2 Class1 elongate lifespan, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F39B3.2 F39B3.1, F39B3.2 F39B3.2; CE30978; WBGene00018191; WP:CE30978; XS184 Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F39E9.5 F39E9.5 F39E9.5; 2D598; WBGene00018197 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F39E9.7 F39E9.7 F39E9.7; 2D596; CE10110; WBGene00018199; WP:CE10110 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F40E10.3 F40E10.3 csq-1; F40E10.3; F40E10.3.1; F40E10.3.2; CE05839; NM_078037; WBGene00000822; WP:CE05839; XP305 Node #37::csq-1/F40E10.3 Protein with strong similarity to human CASQ2 protein, a cardiac muscle calsequestrin 2 ::LG X(14423570)::F40E10.3::24784 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Roy et al 2002 S2 positivecontrol L1 muscle, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F40H3.1 F40H3.1 F40H3.1; 2G471; CE19862; CE39933; WBGene00018249; WP:CE19862; WP:CE39933 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F41B5.4 F41B5.4 cyp-33C3; F41B5.4; CE10222; NM_071214; WBGene00018262; WP:CE10222 cytochrome P450 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Murphy et al 2003 Fig2 Class1 elongate lifespan, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F41B5.6 F41B5.6 F41B5.6; 5C719; CE10226; WBGene00018263; WP:CE10226 Reinke et al 2004, wt herm vs wt herm enriched gen, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F41C3.7 F41C3.7 F41C3.7; 2F25; CE39935; WBGene00018273; WP:CE39935 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F41E6.2 F41E6.2 grd-5; F41E6.2; 5J99; CE10246; NM_072822; WBGene00001694; WP:CE10246 Node #35::grd-5/F41E6.2 Protein of unknown function, has strong similarity to C. elegans GRD-10 ::LG 5(8584041)::F41E6.2::31259 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F41F3.2 F41F3.2 soc-1; F41F3.2; 5F125; CE30786; NM_071849; WBGene00004928; WP:CE30786 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F42C5.2 F42C5.2 F42C5.2; 4I71; CE04555; WBGene00018344; WP:CE04555 G protein-coupled receptor ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F42G9.4 F42G9.4 F42G9.4; 3B379; CE30789; WBGene00018363; WP:CE30789 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F44A6.5 F44A6.5 F44A6.5; CE03326; WBGene00009677; WP:CE03326; XK834 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F45E1.4 F45E1.4 F45E1.4; CE01941; WBGene00018465; WP:CE01941; XI603 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F45H10.4 F45H10.4 drr-1; F45H10.4; 2N786; CE10548; WBGene00009741; WP:CE10548 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F47B10.8 F47B10.8 F47B10.8; CE32424; WBGene00009819; WP:CE32424; XL524 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F47B8.2 F47B8.2 F47B8.2; 5O796; CE10634; WBGene00009803; WP:CE10634 Lund et al 2002 Fig4 Mount 15, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F47D2.5 F47D2.5 srt-36; F47D2.5; 5E738; CE10694; NM_071776; WBGene00018556; WP:CE10694 7TM chemoreceptor, srt family ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F48B9.4 F48B9.4 nlp-37; F48B9.4; CE30276; WBGene00018590; WP:CE30276; XC781 Jones et al 2001 Dauer specific genes P<0.05, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F48G7.10 F48G7.10 F48G7.10; 5B114; CE10772; WBGene00018621; WP:CE10772 Node #39::F48G7.10 Putative paralog of C. elegans R12G8.1, has similarity to phorbol esters/diacyglycerol binding domains ::LG 5(683007)::F48G7.10::31378 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F48G7.4 F48G7.4, F48G7.4#2 F48G7.4; 5B97; CE10760; WBGene00018615; WP:CE10760 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F48G7.5 F48G7.5 F48G7.5; 5B100; CE10762; WBGene00018616; WP:CE10762 McElwee et al 2003 T1 targets of daf-16, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F48G7.8 F48G7.8 F48G7.8; 5B106; CE10768; WBGene00018619; WP:CE10768 McElwee et al 2003 T1 targets of daf-16, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F49E11.11 F49E11.11 F49E11.11; 4N825; CE05907; WBGene00009896; WP:CE05907 testis-specific protein TPX-1 like Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F52C6.10 F52C6.10 bath-7; F52C6.10; 2C176; CE10820; WBGene00018667; WP:CE10820 Node #44::F52C6.10 Member of the BTB/POZ domain protein family ::LG 2(1900085)::F52C6.10::26500 Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F52E10.4 F52E10.4 F52E10.4; CE03396; WBGene00009935; WP:CE03396; XQ900 Lund et al 2002 Fig4 Mount 15, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F53C3.12 F53C3.12#2 F53C3.12; 2E200; CE32672; WBGene00018755; WP:CE32672 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F54B8.3 F54B8.3 fbxa-69; F54B8.3; 5Q294; CE16105; WBGene00010018; WP:CE16105 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Jones et al 2001 Dauer specific genes P<0.05, Lund et al 2002 Fig4 Mount 15, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F54D1.5 F54D1.5 gtl-2; F54D1.5; 4M45; CE28563; NM_069717; WBGene00001796; WP:CE28563 gtl-2 encodes a predicted receptor-activated calcium channel and represents a family of calcium channels, the other two family members being gtl-1 and gon-2. Jones et al 2001 Dauer specific genes P<0.05, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F54E7.7 F54E7.7 rcn-1; F54E7.7; 3G772; CE31002; DSCR1L; NM_065822; SC; WBGene00004321; WP:CE31002 Node #40::dscr1L/F54E7.7 Protein with strong similarity to human DSCR1 (Down sSyndrome candidate region 1), has similarity to human ZAKI-4 (thyroid hormone-responsive factor of skin fibroblasts) ::LG 3(5128488)::F54E7.7::28667 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F55C9.3 F55C9.3 F55C9.3; 5T762; CE18735; WBGene00010100; WP:CE18735 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F55D10.4 F55D10.4 F55D10.4; CE02779; WBGene00018879; WP:CE02779; XF336 olfactory receptor-like protein (weak) Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F55H2.5 F55H2.5 F55H2.5; 3K601; CE00212; WBGene00010131; WP:CE00212 Cytochrome B561 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F55H2.7 F55H2.7, F55H2.7#2 F55H2.7; 3K604; CE34033; WBGene00010132; WP:CE34033 F55H2.7 encodes an unfamiliar protein that is dispensable for viability and gross morphology in mass RNAi screens; it residues in a common operon with clu-1, and thus might act in concert with it. Lund et al 2002 Fig1 aging-regulated genes, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F56A4.H F56A4.H Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F56A6.3#2 F56A6.3#2 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F56B3.7 F56B3.7 ugt-52; F56B3.7; 4B535; CE23781; WBGene00018931; WP:CE23781 7TM chemoreceptor, ugt family ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F56C3.9 F56C3.9 F56C3.9; CE17900; WBGene00018946; WP:CE17900; XC8 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F56D1.6 F56D1.6 cex-1; F56D1.6; 2F739; CE01974; NM_062633; WBGene00018962; WBGene00023407; WP:CE01974 calcium binding protein (weak) Lund et al 2002 Fig1 aging-regulated genes, Lund et al 2002 Fig4 Mount 15, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Romagnolo et al 2002 Fig3b others, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F56F11.1 F56F11.1 F56F11.1; 3D977; CE11276; WBGene00018988; WP:CE11276 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F56H9.2 F56H9.2 F56H9.2; F56H9.2.1; F56H9.2.2; 5N119; CE05972; WBGene00010174; WP:CE05972 Lund et al 2002 Fig4 Mount 15, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F57B1.7 F57B1.7 F57B1.7; 5N702; CE11298; WBGene00010190; WP:CE11298 Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F57F4.2 F57F4.2 F57F4.2; 5G868; CE11340; WBGene00019016; WP:CE11340 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F58A3.3 F58A3.3 F58A3.3; CE11356; WBGene00010223; WP:CE11356; XL629 Lund et al 2002 Fig4 Mount 15, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F58E10.7 F58E10.7 F58E10.7; 5O473; CE18789; WBGene00010262; WP:CE18789 Reinke et al 2004, IVb male soma enriched genes, Romagnolo et al 2002 Fig3b Unkown, Romagnolo et al 2002 Fig5 genes in let-60 timecour, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F58F9.7 F58F9.7 F58F9.7; F58F9.7.1; F58F9.7.2; 4H10; CE07304; WBGene00019060; WP:CE07304 acyl-coenzyme A oxidase McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F58H10.1 F58H10.1 F58H10.1; 1I331; CE36173; WBGene00010291; WP:CE36173 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F59A1.7 F59A1.7 fbxa-108; F59A1.7; 5S136; CE39259; WBGene00010293; WP:CE39259 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F59B10.4 F59B10.4 F59B10.4; 2K804; CE35885; CE36941; WBGene00010320; WP:CE35885; WP:CE36941 Reinke et al 2004, IVb male soma enriched genes, Shen et al 2005 T1 hif-1 depend hypoxia, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 F59F4.4 F59F4.4 acl-1; F59F4.4; CE11552; NM_078205; WBGene00010339; WP:CE11552; XQ469 1-acyl-SN-glycerol-3-phosphate acyltransferase Jones et al 2001 Non dauer genes P<0.05, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched H10D18.2 H10D18.E, H10D18.F H10D18.2; 5E293; CE23800; WBGene00019178; WP:CE23800 Jones et al 2001 Dauer specific genes P<0.05, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched H10D18.C H10D18.C Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 H14N18.3 H14N18.3 H14N18.3; 5J403; CE17975; WBGene00019203; WP:CE17975 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 H19N07.4 H19N07.4 H19N07.4; H19N07.4.1; H19N07.4.2; 5L600; CE16185; WBGene00010408; WP:CE16185 Node #37::H19N07.4/DGAT Protein with strong similarity to acyl-CoA:sterol acyltransferase ::LG 5(11069190)::H19N07.4::22034 McCarroll et al 2004 SFig5 conserved w/ yeast, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched H21P03.3 H21P03.3#2 sms-1; H21P03.3; 4M248; CE19930; CE23816; NM_069767; NM_069768; WBGene00004892; WP:CE19930; WP:CE23816 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 H24K24.5 H24K24.B fmo-15; fmo-5; H24K24.5; 5B378; CE20989; NM_070951; WBGene00001480; WP:CE20989 fmo-15 encodes a flavin-containing monooxygenase (FMO) homologous to various human FMOs mutated in trimethylaminuria (OMIM:602079). flavin-containing monooxygenase Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 H32K16.1 H32K16.1#2 H32K16.1; 1J729; CE16186; WBGene00010421; WP:CE16186 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 H35B03.1 H35B03.1#2 H35B03.1; 4G495; CE31708; WBGene00019263; WP:CE31708 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 H37A05.2 H37A05.2 H37A05.2; 5O110; CE19947; WBGene00010426; WP:CE19947 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 JC8.8 JC8.8 JC8.8; JC8.8.1; JC8.8.2; 4O16; CE33800; WBGene00010440; WP:CE33800 Transthyretin-like family Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched K02A6.2 K02A6.2 K02A6.2; CE02794; WBGene00019293; WP:CE02794; XI838 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K02F2.6 K02F2.6, K02F2.6#2 ser-3; K02F2.6; 1H400; CE17158; NM_059553; WBGene00004778; WP:CE17158 ser-3 encodes a predicted G protein-coupled receptor that is a candidate metabotropic serotonin receptor; SER-3 activity is required for fertility and for embryonic development; to date, SER-3 expression has been detected in the pharynx. seven trans-membrane receptor ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K03B4.7 5K03B4.7 K03B4.7; K03B4.7a.1; K03B4.7a.2; 5F170; CE28581; CE33133; WBGene00019357; WP:CE28581; WP:CE33133 Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, IVb male soma enriched genes, Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched K03E6.7 K03E6.7, K03E6.7#2 K03E6.7; K03E6.7.1; K03E6.7.2; CE31197; WBGene00019365; WP:CE31197; XB704 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 Resveratrol regulate WT, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K03H1.4 K03H1.4 K03H1.4; 3L17; CE00475; WBGene00010539; WP:CE00475 Transthyretin-like family McElwee et al 2003 T1 targets of daf-16, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched, Zhang et al 2002, T1 mec-3 dependent genes, Zhang et al. 2002, Fig2b overexpressed in mec-3MT K03H1.6 K03H1.6 ttr-1; K03H1.6; 3L19; CE00476; WBGene00010541; WP:CE00476 Transthyretin-like family McElwee et al 2003 T1 targets of daf-16, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K04A8.5 K04A8.5 K04A8.5; 5H31; CE11708; WBGene00019376; WP:CE11708 lipase Jones et al 2001 Dauer specific genes P<0.05, Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched K04A8.8 K04A8.8 spp-20; K04A8.8; 5H36; CE30812; NM_072264; WBGene00005005; WP:CE30812 7TM chemoreceptor, spp family Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K04C2.3 K04C2.3 K04C2.3; K04C2.3a.1; K04C2.3a.2; 3H963; CE00721; CE32689; WBGene00019381; WP:CE00721; WP:CE32689 Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, IVb male soma enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched K07A1.7 K07A1.7 K07A1.7; 1K172; CE11852; WBGene00010614; WP:CE11852 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Murphy et al 2003 Fig2 Class1 elongate lifespan, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K07A3.2 K07A3.A ptr-12; K07A3.2; 1D158; CE39591; CE39592; WBGene00004226; WP:CE39591; WP:CE39592 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K07C11.3 K07C11.3 K07C11.3; 5I687; CE29510; WBGene00019476; WP:CE29510 Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K07C11.5 K07C11.5 tag-225; K07C11.5; K07C11.5.1; K07C11.5.2; 5I683; CE07348; WBGene00019478; WP:CE07348 K07C11.5 is orthologous to the human gene SIMILAR TO TISSUE INHIBITOR OF METALLOPROTEINASE 3 (SORSBY FUNDUS DYSTROPHY, PSEUDOINFLAMMATORY) (TIMP3; OMIM:188826), which when mutated leads to disease. metalloproteinase inhibitor Lund et al 2002 Fig1 aging-regulated genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, fem3 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K07C11.7 K07C11.7 K07C11.7; K07C11.7b.1; K07C11.7b.2; 5I688; CE28592; CE33142; WBGene00019479; WP:CE28592; WP:CE33142 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K07C5.5 K07C5.5 K07C5.5; 5K836; CE06115; WBGene00010628; WP:CE06115 hydrolase ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K07E1.1 K07E1.1 K07E1.1; 2E841; CE39745; WBGene00019489; WP:CE39745 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K08A2.5 B0303.5#2, C01B12.6#2, T02G5.5#2, T20H12.2#2, Y47H9C.3#2, Y6B3B.8 nhr-88; F38A1.3; K08A2.5; K08A2.5a.1; K08A2.5a.2; K08A2.5a.3; K08A2.5b.1; K08A2.5b.2; K08A2.5c.1; K08A2.5c.2; K08A2.D; 2D275; CE29513; CE33143; CE33144; WBGene00003678; WP:CE29513; WP:CE33143; WP:CE33144 transposase Lund et al 2002 Fig2D Tc3 genes, Wang et al 2003 S6 removed genes of contamination, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K08A2.C K08A2.C Lund et al 2002 Fig2D Tc3 genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K08D12.7 K08D12.G K08D12.7; CE38619; WBGene00044293; WP:CE38619 Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K08E5.2 K08E5.2 indy-2; nac-3; nad-2; K08E5.2; K08E5.2b.1; K08E5.2b.2; K08E5.2b.3; 3L247; CE33531; CE33532; NM_181984; WBGene00003519; WP:CE33531; WP:CE33532; cenadc2 Yeast ORF YCR37C McCarroll et al 2004 SFig5 conserved w/ yeast, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K08H10.2 K08H10.2 K08H10.2; CE31359; CE37843; WBGene00010695; WP:CE31359; WP:CE37843 The K08H10.2 gene encodes a protein (K08H10.2A) that is predicted to be hydrophilic and heat-resistant, and that might participate in anhydrobiosis. ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K08H10.4 K08H10.4 uda-1; K08H10.4; K08H10.4.1; K08H10.4.2; 5K487; CE18877; NM_073172; WBGene00010697; WP:CE18877 Node #40::K08H10.4 Protein with strong similarity to members of the GDA1/CD39 (nucleoside phosphatase) protein family ::LG 5(9954021)::K08H10.4::29814 McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K09C8.3 K09C8.3 nas-10; K09C8.3; CE03479; NM_077431; WBGene00003529; WP:CE03479; XL580 metalloprotease ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K09E4.4 K09E4.4 K09E4.4; K09E4.4.1; K09E4.4.2; 2O406; CE32692; WBGene00010722; WP:CE32692 K09E4.4 is orthologous to the human gene N-ACETYLGALACTOSAMINIDASE, ALPHA- (NAGLU; OMIM:104170), which when mutated leads to disease. Bishop et al 2004 T1 Upregulated in vhl-1 vs WT, Jones et al 2001 Dauer specific genes P<0.05, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched K09H11.6 K09H11.6 K09H11.6; 5G212; CE35340; WBGene00019603; WP:CE35340 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 K10B3.6 K10B3.6 K10B3.6; CE07369; CE34337; CE34338; WBGene00019612; WP:CE07369; WP:CE34337; WP:CE34338; XD726 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K10D2.2 K10D2.2 K10D2.2; K10D2.2.1; K10D2.2.2; 3G277; CE27429; WBGene00019628; WP:CE27429 Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched K10D6.1 K10D6.1 K10D6.1; 5L673; CE37537; WBGene00010741; WP:CE37537 GABA receptor beta subunit Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K11D12.8 K11D12.8 K11D12.8; 5F518; CE12140; WBGene00019648; WP:CE12140 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K11G9.1 K11G9.1 K11G9.1; 5H159; CE07374; WBGene00019652; WP:CE07374 esterase McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K11G9.5 K11G9.5 K11G9.5; 5H166; CE30094; WBGene00019655; WP:CE30094 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K11G9.6 K11G9.6 met-I; mtl-1; K11G9.6; 5H172; CE07379; NM_072295; WBGene00003473; WP:CE07379 Node #38::mtl-1/CeMT-I/met-I/mt-I/K11G9.6 Metallothionein-related, cadmium-binding intestinal protein ::LG 5(6677979)::K11G9.6::31604 Lund et al 2002 Fig4 Mount 15, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, herm soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched K12D9.7 K12D9.7 srw-119; K12D9.7; 5D474; CE12192; NM_071417; WBGene00005866; WP:CE12192 7TM chemoreceptor, srw family Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 K12G11.2 K12G11.2 sulp-5; K12G11.2; 5M363; CE39106; NM_073589; WBGene00010789; WP:CE39106 sulphate transporter Lund et al 2002 Fig4 Mount 15, McCarroll et al 2004 SFig5 conserved w/ yeast, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M01H9.3 M01H9.3 M01H9.3; M01H9.3a.1; M01H9.3a.2; 4F234; CE28614; CE28615; CE37722; WBGene00019719; WP:CE28614; WP:CE28615; WP:CE37722 Murphy et al 2003 Fig2 Class1 elongate lifespan, Shen et al 2005 T1 hif-1 depend hypoxia, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M04D8.7 M04D8.7 M04D8.7; 3L125; CE00580; WBGene00010865; WP:CE00580 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M110.5 M110.5 dab-1; M110.5; M110.5a.1; M110.5a.2; 2I519; CE36393; CE36446; CE37844; NM_063329; NM_063330; NM_063331; WBGene00000894; WP:CE36393; WP:CE36446; WP:CE37844 disabled-like protein Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M117.1 M117.1 M117.1; 4M583; CE32910; WBGene00010918; WP:CE32910 sodium/phosphate transporter Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M162.3 M162.3 srt-45; M162.3; 5U247; CE18893; NM_075433; WBGene00010929; WP:CE18893 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M162.4 M162.4 srt-46; M162.4; 5U245; NM_075432; WBGene00010930 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M163.1 M163.1 M163.1; CE12446; WBGene00010935; WP:CE12446; XP122 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M176.4 M176.4 M176.4; 2J711; CE33289; WBGene00010943; WP:CE33289 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M176.4#2 M176.4#2 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M176.8 M176.8 M176.8; 2J728; CE12474; WBGene00010945; WP:CE12474 chitinase Lund et al 2002 Fig4 Mount 15, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 M195.3 M195.3 amt-3; M195.3; M195.3.1; M195.3.2; 2I654; CE32912; NM_063360; WBGene00000135; WP:CE32912 amt-3 encodes one of four C. elegans homologs of AMT1 (AT11_ARATH), a high-affinity ammonium transporter from Arabidopsis thaliana; AMT-3 is closely similar to its paralog AMT-2, with somewhat more distant paralogy to AMT-1 and AMT-4. NH(4+) transporter McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R02C2.2 R02C2.2 kin-34; R02C2.2; 5A724; CE39025; WBGene00019815; WP:CE39025 Node #39::R02C2.2 Serine/threonine protein kinase with similarity to S. cerevisiae Chk1p checkpoint kinase and D. melanogaster GRP protein kinase (involved in regulation of the midblastula transition) ::LG 5(243750)::R02C2.2::26866 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R02C2.3 R02C2.3 tag-40; R02C2.3; 5A726; CE35355; WBGene00006419; WP:CE35355 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 R02F2.8 R02F2.8, R02F2.8#2 R02F2.8; 3G580; CE00772; WBGene00019837; WP:CE00772 Node #39::R02F2.8 Member of the amino acid/auxin permease-like (AAAP-like) protein family ::LG 3(4939016)::R02F2.8::26880 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R03A10.2 R03A10.2 R03A10.2; CE06208; WBGene00010982; WP:CE06208; XQ53 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R03A10.6 R03A10.6 R03A10.6; CE25963; WBGene00010986; WP:CE25963 steroid hormone receptor ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R03E9.1 R03E9.1#2 mdl-1; R03E9.1; CE04784; NM_076735; WBGene00003163; WP:CE04784; XH361 human Max-interacting bHLH-Zip protein Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R04E5.7 R04E5.7 R04E5.7; CE35748; WBGene00019870; WP:CE35748; XJ416 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R04F11.4 R04F11.4 twk-13; twk-15; R04F11.4; 5M800; CE30561; NM_073690; WBGene00006668; WP:CE30561 Node #37::twk-15/R04F11.4 Member of the 4 TM potassium channel protein family ::LG 5(12269618)::R04F11.4::49747 potassium channel protein Lund et al 2002 Fig4 Mount 15, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R05D8.10 R05D8.B dhs-15; R05D8.10; 5D246; CE21092; NM_071353; WBGene00000978; WP:CE21092 Node #38:: Member of the alcohol/ribitol dehydrogenase-like protein family ::LG 5(2740454)::R05D8.B::49313 alcohol dehydrogenase Reinke et al 2004, IVb male soma enriched genes, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S6 removed genes of contamination, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched R05F9.6 R05F9.6 R05F9.6; 2F181; CE04809; WBGene00019890; WP:CE04809 This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. phosphoglucomutase McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched R08E5.4 R08E5.4 R08E5.4; 5E247; CE12578; WBGene00019964; WP:CE12578 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R09B5.11 R09B5.11 R09B5.11; 5B919; CE30296; WBGene00019979; WP:CE30296 sugar transporter Reinke et al 2004, GO categories, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R09B5.6 R09B5.6 hacd-1; R09B5.6; R09B5.6.1; R09B5.6.2; 5B939; CE12628; WBGene00019978; WP:CE12628 3-hydroxyacyl-CoA dehydrogenase Murphy et al 2003 Fig2 Class1 elongate lifespan, ReichertK et al 2005 T3 xenobiotic downregulated, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R102.10 R102.7 R102.10; 4L469; CE36710; WBGene00011297; WP:CE36710 Reinke et al 2004, spermatogenesis enriched genes, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt males vs glp4 male enriched , Reinke et al 2004, shared sperm, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched R10D12.1 R10D12.1 R10D12.1; 5O414; CE12672; WBGene00011185; WP:CE12672 sodium/phosphate transporter Reinke et al 2004, IVb male soma enriched genes, Shen et al 2005 T1 hif-1 depend hypoxia, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R10H1.1 R10H1.1 R10H1.1; 2H785; CE31820; NM_063167; WBGene00019998; WP:CE31820 trypsin inhibitor Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R11A8.4 R11A8.4#2 sir-2.1; R11A8.4; R11A8.4.1; R11A8.4.2; 4L128; CE06302; NM_069511; WBGene00004800; WP:CE06302 sir-2.1 encodes a homolog of the S. cerevisiae gene SIR2. Yeast regulatory protein SIR2 like Jones et al 2001 T2 lifespan and Dauer, McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R11D1.4 R11D1.4 R11D1.4; 5N192; CE06309; WBGene00011245; WP:CE06309 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R11F4.1 R11F4.1 R11F4.1; R11F4.1.1; R11F4.1.2; 2E383; CE04828; WBGene00020007; WP:CE04828 The R11F4.1 gene encodes a homolog of human glycerol kinase (GK), which when mutated leads to hyperglycerolemia (glycerol kinase deficiency; OMIM:307030). Glycerol kinase McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R11F4.2 R11F4.2 R11F4.2; 2E375; CE33433; CE36007; WBGene00020008; WP:CE33433; WP:CE36007 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R11H6.3 R11H6.3 R11H6.3; 5P85; CE12774; WBGene00011251; WP:CE12774 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R12E2.11 R12E2.11 R12E2.11; 1E740; CE18143; WBGene00020036; WP:CE18143 purine/pyrimidine phosphoribosyl transferase McCarroll et al 2004 SFig5 conserved w/ yeast, Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched R13A5.3 R13A5.3 R13A5.3; 3I655; CE01375; WBGene00020047; WP:CE01375 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R13D11.4 R13D11.4 R13D11.4; 5B285; CE12788; WBGene00020058; WP:CE12788 Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R13D7.7 R13D7.7 gst-41; R13D7.7; 5H878; CE28770; NM_072493; WBGene00001789; WP:CE28770 glutathione S-transferase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R13H8.1 R13H8.1 daf-16; daf-17; R13H8.1; R13H8.1e.1; R13H8.1e.2; 1L351; CE28771; CE28772; CE28773; CE33160; CE38722; CE38723; WBGene00000912; WP:CE28771; WP:CE28772; WP:CE28773; WP:CE33160; WP:CE38722; WP:CE38723 daf-16 encodes a transcription factor of the HNF-3/forkhead family (orthologous to mammalian AFX, FKHR, and FKHRL1) that acts in an insulin-mediated pathway to affect dauer formation, and that also affects life span and reproduction; DAF-16 can interact with CBP-1 in vitro, and interacts genetically both with other genes in the insulin signaling and with the nuclear hormone receptor DAF-12; daf-16 is broadly expressed in most if not all cells (though expression in the pharynx and in the somatic gonad differ for the two isoforms); DAF-16 is homologous to human FORKHEAD BOX O1A (FOXO1A), which when mutated leads to rhabdomyosarcoma (OMIM:136533). Jones et al 2001 T2 lifespan and Dauer, McElwee et al 2003 Fig4 daf-16 target lifspan, Wang et al 2003 S4 TransientList, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 Fig7 daf-16 R151.2 R151.2 R151.2; R151.2b.1; R151.2b.2; R151.2b.3; R151.2b.4; R151.2b.5; R151.2d.1; R151.2d.2; 3I303; CE00745; CE29454; CE29987; CE37138; WBGene00020107; WP:CE00745; WP:CE29454; WP:CE29987; WP:CE37138 R151.2 is orthologous to the human gene PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE 1 (PRPS1; OMIM:311850), which when mutated leads to disease Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, mixed oogenesis soma, Romagnolo et al 2002 Fig3b Metabolism, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R160.7 R160.7 lst-2; R160.7; CE33815; NM_076355; WBGene00003084; WP:CE33815; XE998 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 R53.7 R53.7 R53.7; R53.7a.1; R53.7a.2; 2K262; CE03577; CE32921; WBGene00011276; WP:CE03577; WP:CE32921 protein kinase like protein Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T01B4.2 T01B4.2 twk-22; T01B4.2; CE06337; NM_078254; WBGene00006675; WP:CE06337; XQ929 Node #39::twk-17/T01B4.2 Member of the 4 TM potassium channel protein family ::LG X(16016281)::T01B4.2::29082 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T01B6.3 T01B6.3 T01B6.3; CE33820; CE33821; WBGene00020135; WP:CE33820; WP:CE33821; XC930 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T01B6.4 T01B6.4, T01B6.4#2 T01B6.4; CE12884; WBGene00020136; WP:CE12884; XC954 Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T01G1.2 T01G1.2 T01G1.2; 4M119; CE12970; WBGene00011337; WP:CE12970 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T02E1.4 T02E1.4 T02E1.4; 1I792; CE13052; WBGene00011377; WP:CE13052 dehydrogenase Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T02E9.1 T02E9.1 T02E9.1; 5L832; CE13062; WBGene00011381; WP:CE13062 G-protein coupled receptor ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T03D3.1 T03D3.1 ugt-53; T03D3.1; 5D329; CE13068; WBGene00020182; WP:CE13068 7TM chemoreceptor, ugt family Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T03E6.7 T03E6.7 cpl-1; T03E6.7; T03E6.7.1; T03E6.7.2; 5R74; CE16333; NM_074798; WBGene00000776; WP:CE16333 cpl-1 encodes a member of the cathepsin L-like cysteine protease family required for embryonic viability and normal growth; expressed in eggshells and throughout early embryos, accumulates in intestinal cells during late embryogenesis, and expressed in the cuticle, gonad, and pharynx later in development. cathepsin-like protease McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Murphy et al 2003 Fig2 Class2 shorten lifespan, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched T03F6.4 T03F6.4 T03F6.4; 3O477; CE32483; WBGene00011400; WP:CE32483 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T04A11.5 T04A11.5 T04A11.5; 4N250; WBGene00011420 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T04A8.4 T04A8.4 tag-243; T04A8.4; 3F776; CE39625; WBGene00011406; WBGene00044078; WP:CE39625 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T04C12.1 T04C12.1 T04C12.1; 5L538; CE13142; WBGene00011427; WP:CE13142 Lund et al 2002 Fig4 Mount 15, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T05A7.1 T05A7.1 T05A7.1; 2E969; CE04888; WBGene00020219; WP:CE04888 Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T05B4.12 T05B4.12 T05B4.12; 5E602; CE13215; WBGene00020243; WP:CE13215 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched T06C12.10 T06C12.10 tag-217; T06C12.10; T06C12.10.1; T06C12.10.2; 5Q366; CE31986; WBGene00011517; WP:CE31986 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T07C12.9 T07C12.9 T07C12.9; 5K438; CE21160; WBGene00011573; WP:CE21160 N-methyltransferase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T07C4.5 T07C4.5 T07C4.5; T07C4.5.1; T07C4.5.2; 3L429; CE03639; WBGene00011561; WP:CE03639 Transthyretin-like family ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T07E3.3 T07E3.3 T07E3.3; 3H993; CE01384; WBGene00020314; WP:CE01384 Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched T08A9.2 T08A9.2 T08A9.2; CE31232; WBGene00020335; WP:CE31232; XH951 Reinke et al 2004, wt herm vs wt herm enriched gen, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T08B1.4 T08B1.4 T08B1.4; 5C465; CE33310; WBGene00020341; WP:CE33310 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T08B1.6 T08B1.6 T08B1.6; 5C451; CE27444; WBGene00020343; WP:CE27444 long-chain fatty-acid CoA ligase Romagnolo et al 2002 Fig3b Metabolism, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T10B5.8 T10B5.8 T10B5.8; 5C323; CE18238; WBGene00020394; WP:CE18238 Node #43::T10B5.8 Putative NADH/NADPH oxidase ::LG 5(1807489)::T10B5.8::25419 Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T10C6.14 T10C6.14 his-1; T10C6.14; 5Q523; CE03252; NM_074633; WBGene00001875; WP:CE03252 his-1 encodes an H4 histone; his-1 is contained within the histone gene cluster HIS1; transcript analysis suggests that it encodes the major class of H4 transcripts. histone H4 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T10H4.10 T10H4.10 cyp-34A1; T10H4.10; 5P762; CE16395; NM_074386; WBGene00011698; WP:CE16395 cytochrome P450 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T10H4.11 T10H4.11 cyp-34A2; T10H4.11; 5P764; CE16396; NM_074387; WBGene00011699; WP:CE16396 cytochrome P450 Jones et al 2001 Dauer specific genes P<0.05, Murphy et al 2003 Fig2 Class1 elongate lifespan, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 T10H4.6 T10H4.6 srw-17; T10H4.6; 5P754; CE16391; NM_074382; WBGene00005764; WP:CE16391 7TM chemoreceptor, srw family ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T11F9.11 T11F9.11 dhs-19; T11F9.11; 5L970; CE06423; NM_073514; WBGene00000982; WP:CE06423 Node #44::T11F9.11 Putative oxidoreductase, has strong similarity to human short-chain dehydrogenase/reductase SDR1, has strong similarity to C. elegans T02E1.5 and T05F1.10 ::LG 5(11438231)::T11F9.11::25451 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T12A7.5 T12A7.5 T12A7.5; 4M551; CE13581; WBGene00011726; WP:CE13581 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T12G3.1 T12G3.1 T12G3.1; T12G3.1.1; T12G3.1.2; 4M801; CE37554; WBGene00011737; WP:CE37554 Drosphila REF (2)P like ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T13F3.6 T13F3.6 T13F3.6; 5Q750; CE39775; WBGene00011753; WP:CE39775 Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T16A1.4 T16A1.4 T16A1.4; 2C367; CE13710; WBGene00020535; WP:CE13710 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched T16G1.4 T16G1.4 T16G1.4; 5N420; CE20074; WBGene00011798; WP:CE20074 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T19B10.3 T19B10.3 T19B10.3; 5L700; CE37992; WBGene00011832; WP:CE37992 The T19B10.3 gene encodes an ortholog of the human gene GALACTOSIDASE, BETA 1 (GLB1), which when mutated leads to gangliosidosis type I (OMIM:230500). beta-galactosidase McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T19E7.3 T19E7.3, T19E7.4 bec-1; T19E7.3; T19E7.3.1; T19E7.3.2; 4G426; CE27592; NM_068443; WBGene00000247; WP:CE27592 bec-1 encodes a coiled-coil protein that is orthologous to the yeast and mammalian autophagy proteins Apg6/Vps30p/beclin1; bec-1 activity is required for normal dauer morphogenesis and survival of dauer larvae, as well as for adult life span extension of daf-2(e1370) mutants at 15 degrees; in addition, loss of bec-1 activity by large-scale RNAi indicates that BEC-1 is required for normal growth rates, movement, and vulval morphogenesis; by homology, BEC-1 may be part of a Class III phosphatidylinositol 3-kinase complex that plays a role in localizing autophagy proteins to preautophagosomal structures, and overexpression of C. elegans bec-1 in S. cerevisiae APG6/VPS30 mutants can rescue associated autophagy defects; a bec-1::GFP reporter fusion is expressed in the hypodermis, intestine, nervous system, pharynx, and reproductive organs, all tissues that are remodelled during dauer larval development. McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T19H12.10 T19H12.10 ugt-11; T19H12.10; 5F372; CE13770; WBGene00020593; WP:CE13770 7TM chemoreceptor, ugt family ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T20D4.11 T20D4.11 T20D4.11; 5D875; CE13800; WBGene00020617; WP:CE13800 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched T21C9.7 T21C9.7 srg-32; T21C9.7; 5L66; CE33188; NM_073315; WBGene00005189; WP:CE33188 G-protein coupled receptor, srg family Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T22C8.6 T22C8.6#2, T22C8.6#3 T22C8.6; 2I918; CE02354; WBGene00011927; WP:CE02354 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T22E5.1 T22E5.1 T22E5.1; CE04991; CE39777; WBGene00020690; WP:CE04991; WP:CE39777; XH31 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T23B3.4 T23B3.4 T23B3.4; 1H260; CE31369; WBGene00020712; WP:CE31369 G-protein coupled receptor Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T24D3.1 T24D3.1 med-1; T24D3.1; CE35028; NM_077683; WBGene00003180; WP:CE35028; XN49 The med-1 gene encodes a GATA-type transcription factor that is an immediate target of maternal SKN-1, and that participates in specifying the mesendoderm. GLN3 like ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T24D8.5 T24D8.5 nlp-2; T24D8.5; CE05009; NM_076025; WBGene00003740; WP:CE05009; XC960 ReichertK et al 2005 T3 xenobiotic downregulated, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T25B9.7 T25B9.7 ugt-54; T25B9.7; 4L525; CE32939; WBGene00012013; WP:CE32939 UDP-glucuronosyltransferase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T25D10.3 T25D10.3 spp-11; T25D10.3; 2G696; CE30192; NM_062890; WBGene00004996; WP:CE30192 7TM chemoreceptor, spp family Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 T27F6.8 T27F6.8 T27F6.8; 1N88; CE16517; WBGene00012107; WP:CE16517 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28A11.19 T28A11.19 T28A11.19; 5D744; CE14315; WBGene00020881; WP:CE14315 Lund et al 2002 Fig1 aging-regulated genes, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28A11.2 T28A11.2 T28A11.2; 5D755; CE20109; WBGene00020869; WP:CE20109 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28A11.4 T28A11.4 T28A11.4; 5D747; CE14287; WBGene00020871; WP:CE14287 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28B11.1 T28B11.1 T28B11.1; T28B11.1.1; T28B11.1.2; 5L194; CE14335; WBGene00012117; WP:CE14335 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28B4.3 T28B4.3 T28B4.3; CE14325; WBGene00020886; WP:CE14325; XH214 Reinke et al 2004, mixed sperm soma, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, GO categories, Reinke et al 2004, fem3 enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28B8.2 T28B8.2 Ceinsulin-1; igf-1; ins-18; T28B8.2; 1I725; CE27217; NM_059830; WBGene00002101; WP:CE27217 Node #40::T28B8.2/Ceinsulin-1 Insulin/IGF-like peptide that may be a ligand for the DAF-2 receptor ::LG 1(7481626)::T28B8.2::32847 insulin-like growth factor I like Jones et al 2001 T2 lifespan and Dauer, Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28C12.6 T28C12.6 T28C12.6; 5G812; CE14349; WBGene00020893; WP:CE14349 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 T28C6.8 T28C6.8 T28C6.8; 4J594; CE26012; WBGene00012122; WP:CE26012 Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W01A11.6 F46E10.5, W01A11.6 moc-2; W01A11.6; 5G980; CE29358; NM_072250; WBGene00003385; WP:CE29358 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W01A11.7 F46E10.6, W01A11.7 F46E10.G; W01A11.7; W01A11.7.1; W01A11.7.2; 5G982; CE37796; WBGene00020912; WP:CE37796 Node #40::W01A11.7/F46E10.6 Protein of unknown function, putative paralog of C. elegans F46E10.G ::LG 5(6454385)::W01A11.7::30347 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Reinke et al 2004, IVb male soma enriched genes, Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched W01C9.5 W01C9.5 W01C9.5; 2I838; CE02371; WBGene00012178; WP:CE02371 Globin ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W02D9.10 W02D9.10 W02D9.10; 1N143; CE14472; WBGene00012216; WP:CE14472 GuhaThakurta et al 2002 T1 upregu on heat stress, Lund et al 2002 Fig4 Mount 15, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, Shen et al 2005 T1 hif-1indepen hypoxia, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 Fig6A Ethanol HS, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched W02H5.8 W02H5.N W02H5.8; W02H5.A; W02H5_1932.A; 5D126; CE21240; WBGene00020962; WP:CE21240 McCarroll et al 2004 SFig5 conserved w/ yeast, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W05E10.2 W05E10.2 W05E10.2; 5M167; CE39525; WBGene00012281; WP:CE39525 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W07E11.3 W07E11.3 flp-2; flp-2a; flp-2b; W07E11.3; CE02374; CE28258; WBGene00001445; WP:CE02374; WP:CE28258; XK712 Node #42::flp-2/W07E11.3 Putative FMRF-amide neurotransmitters ::LG X(9848132)::W07E11.3::33814 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W07E6.6 W07E6.6 W07E6.6; WBGene00021077 Murphy et al 2003 Fig2 Class1 elongate lifespan, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W07G4.5 W07G4.5 W07G4.5; 5N529; CE03793; WBGene00012339; WP:CE03793 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W08A12.4 W08A12.4 W08A12.4; 5E153; CE14702; WBGene00021081; WP:CE14702 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched W09D12.1 W09D12.1 W09D12.1; W09D12.1.1; W09D12.1.2; W09D12.1.3; 5P398; CE33197; WBGene00012364; WP:CE33197 zinc metalloprotease Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 W10D5.1 W10D5.1 mef-2; W10D5.1; 1J677; CE25156; NM_060040; WBGene00003182; WP:CE25156 Node #40::mef-2/W10D5.1 Putative MADS-box transcription factor with similarity to human myocyte-specific enhancer factors (MEF2 proteins) ::LG 1(8427389)::W10D5.1::22531 MEF-2 protein McCarroll et al 2004 SFig5 conserved w/ yeast, McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 Resveratrol regulate WT, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched Y105E8C.I Y105E8C.I Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y110A2AL.4 Y110A2A_54.H Y110A2AL.4; 2D131; CE33472; CE33473; WBGene00022441; WP:CE33472; WP:CE33473 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y110A2AL.6 Y110A2A_54.G Y110A2AL.6; 2D132; CE36029; WBGene00022443; WP:CE36029 Reinke et al 2004, wt herm vs wt herm enriched gen, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y116F11A.O Y116F11A.O Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y11D7A.10 Y11D7A.10 Y11D7A.10; Y11D7A.10.1; Y11D7A.10.2; 4K24; CE20193; WBGene00012434; WP:CE20193 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y15E3A.5 Y15E3B.F Y15E3A.5; CE31634; WBGene00012444; WP:CE31634; XP963 Murphy et al 2003 Fig2 Class1 elongate lifespan, Shen et al 2005 T1 hif-1 depend hypoxia, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y17G7B.17 Y17G7B.17 Y17G7B.17; 2M384; CE35650; WBGene00012468; WP:CE35650 Node #36::Y17G7B.17 Protein with similarity to human myelodysplasia/myeloid leukemia factor 2 (MLF2) (Hs.79026) ::LG 2(12066951)::Y17G7B.17::52922 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y32F6B.1 Y32F6B.1 Y32F6B.1; 5K962; CE16610; WBGene00012531; WP:CE16610 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, list of genes in cluster D, Reinke et al 2004, fem3 enriched genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y37A1A.2 Y37A1A.2 Y37A1A.2; 4O672; CE39818; WBGene00012535; WP:CE39818 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y37H2B.1 Y37H2B.1 Y37H2B.1; 5S708; CE19088; WBGene00012572; WP:CE19088 Jones et al 2001 Dauer specific genes P<0.05, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y38E10A.10 Y38E10A.J Y38E10A.10; 2M902; CE21590; WBGene00012588; WP:CE21590 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y38E10A.11 Y38E10A.K Y38E10A.11; 2M905; CE21591; WBGene00012589; WP:CE21591 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y38E10A.18 Y38E10A.R nhr-234; Y38E10A.18; 2M929; CE21598; WBGene00012596; WP:CE21598 Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y38E10A.23 Y38E10A.X Y38E10A.23; 2M960; CE21604; WBGene00012601; WP:CE21604 Shen et al 2005 T1 hif-1 depend hypoxia, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y39A3B.1 Y39A3B.1 Y39A3B.1; Y39A3B.I; 3D97; CE35079; WBGene00021436; WP:CE35079 Node #36:: Protein of unknown function ::LG Y39A3B.1/Y39A3B.I()::Y39A3B.1::50796 ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y39B6A.5 B0413.1 Y39B6A.5; 5T632; CE21672; WBGene00012668; WP:CE21672 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y39G10AR.3 Y39G10A_244.C Y39G10AR.3; 1C941; CE37063; WBGene00021461; WP:CE37063 Shen et al 2005 T1 hif-1indepen hypoxia, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y40H4A.1 C53A5.12 acm-3; gar-3; gar-3a; Y40H4A.1; Y40H4A.1a.1; Y40H4A.1a.2; Y40H4A.1b.1; Y40H4A.1b.2; Y40H4A.A; 5P46; CE27783; CE35800; NM_074207; WBGene00001519; WP:CE27783; WP:CE35800 Node #42::gar-3/C53A5.12 Muscarinic acetylcholine receptor, member of the G-protein coupled receptor protein family ::LG 5(14514196)::C53A5.12::49364 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y41D4A_4723.A Y41D4A_4723.A Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y42A5A.2 Y42A5A.2 Y42A5A.2; 5L568; CE20256; WBGene00012777; WP:CE20256 Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y43F8A.3 Y43F8A.3 Y43F8A.3; 5T853; CE38569; WBGene00012810; WP:CE38569 Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y44A6C.1 Y44A6C.1 Y44A6C.1; 5V183; CE28852; WBGene00012850; WP:CE28852 Reinke et al 2004, IVb male soma enriched genes, Shen et al 2005 T1 hif-1 depend hypoxia, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y44F5A.1 Y44F5A.1 Y44F5A.1; 3E324; 3F336; CE16634; WBGene00012858; WP:CE16634 Reinke et al 2004, herm soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y45F10D.1 Y45F10D.1 Y45F10D.1; WBGene00012882 Lund et al 2002 Fig2D Tc3 genes, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y45G12C.3 Y45G12C.3 Y45G12C.3; Y45G12C.E; 5D31; WBGene00021566 Custodia et al 2001 T2 Glut-S-transferase, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Reinke et al 2004, wt herm vs wt herm enriched gen, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y47D3B.2 Y47D3B.2 nlp-21; Y47D3B.2; 3M478; CE19175; CE24343; NM_067065; NM_067066; WBGene00003759; WP:CE19175; WP:CE24343 nlp-21 encodes nine predicted neuropeptide-like proteins; in C. elegans, nlp-21 is part of the GGARAF neuropeptide family that also contains nlp-9; nlp-21 is expressed in a variety of neurons, including AFD, five head neurons, the ventral nerve cord, one anterior pharyngeal neuron, and one tail neuron; nlp-21 expression is also detected in the embryo and the intestine; as loss of nlp-21 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-21-encoded peptides in development and/or behavior is not yet known. Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y48A6A.1 Y48A6A.1 zig-5; Y48A6A.1; 3M40; CE31735; NM_067004; WBGene00006982; WP:CE31735 Node #40::zig-5/Y48A6A.1 Putative member of Immunoglobulin superfamily ::LG 3(10391708)::Y48A6A.1::53405 Jones et al 2001 Dauer specific genes P<0.05, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y48A6B.9 Y48A6B.9 Y48A6B.9; Y48A6B.9.1; Y48A6B.9.2; 3M125; CE19192; WBGene00012970; WP:CE19192 Zinc-binding dehydrogenases Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y48G8AL.13 Y48G8A_3051.A, Y48G8A_3051.B Y48G8AL.13; Y48G8AL.13.1; Y48G8AL.13.2; Y48G8AL.13.3; 1B698; CE22187; WBGene00021691; WP:CE22187 Lund et al 2002 Fig4 Mount 15, Romagnolo et al 2002 Fig3b Transporters, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y4C6B.2 Y4C6B.2 Y4C6B.2; Y4C6B.G; 4G107; CE21306; CE35096; WBGene00021156; WP:CE21306; WP:CE35096 Reinke et al 2004, wt herm vs wt herm enriched gen, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y4C6B.3 Y4C6B.3 Y4C6B.3; 4G99; CE21307; WBGene00021157; WP:CE21307 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y51A2A.4 Y51A2A.4 Y51A2A.4; 5S775; CE25360; WBGene00013060; WP:CE25360 Bishop et al 2004 T1 Upregulated in vhl-1 vs WT, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y51A2A.7 Y51A2A.7 Y51A2A.7; 5S786; CE20278; WBGene00013063; WP:CE20278 Lectin C-type domain Jones et al 2001 Dauer specific genes P<0.05, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y51A2D.10 Y51A2D.10 Y51A2D.10; 5T37; CE19206; WBGene00013078; WP:CE19206 Transthyretin-like family Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y51A2D.14 Y51A2D.14 Y51A2D.14; 5T63; CE19210; WBGene00013081; WP:CE19210 Reinke et al 2004, mixed sperm soma, Reinke et al 2004, fem3 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y51A2D.9 Y51A2D.9 Y51A2D.9; 5T36; CE19205; WBGene00013077; WP:CE19205 Transthyretin-like family ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y51H4A.19 Y51H4A.Q Y51H4A.19; 4R619; CE22344; WBGene00013113; WP:CE22344 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y51H4A.20 Y51H4A.R Y51H4A.20; 4R620; CE39651; WBGene00013114; WP:CE39651 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y54G11A.13 Y54G11A.6 ctl-3; Y54G11A.13; 2O594; CE22478; WBGene00013220; WP:CE22478 catalase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y54G11A.5 Y54G11A.5 ctl-2; Y54G11A.5; Y54G11A.5.1; Y54G11A.5.2; 2O590; CAT; CE22476; NM_064576; WBGene00000831; WP:CE22476; cat1 ctl-2 encodes a peroxisomal catalase, whose mRNA abundance decreases as animals age; ctl-2 is orthologous to human CATALASE (OMIM:115500, mutated in acatalasemia). Catalase Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y55F3BR.10 Y55F3A_747.A Y55F3BR.10; CE22531; WBGene00044742; WP:CE22531 Murphy et al 2003 Fig2 Class2 shorten lifespan, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y56A3A.33 C51G7.B, Y56A3A.33 Y56A3A.33; 3N90; CE24469; WBGene00013244; WP:CE24469 McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Murphy et al 2003 Fig2 Class1 elongate lifespan, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y57A10B.1 Y57A10B.1 Y57A10B.1; 2M650; CE35688; WBGene00013273; WP:CE35688 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y59A8B.19 Y59A8C.D, Y59A8C.F Y59A8B.19; Y59A8C.F; 5S487; CE26209; WBGene00013351; WP:CE26209 Bishop et al 2004 T1 Upregulated in vhl-1 vs WT, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y5F2A.1 Y5F2A.1 Y5F2A.1; Y5F2A.1.1; Y5F2A.1.2; 4L828; CE19022; WBGene00012382; WP:CE19022 Transthyretin-like family Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, Reinke et al 2004, fem3 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y5F2A.2 Y5F2A.2 Y5F2A.2; 4L830; CE19023; WBGene00012383; WP:CE19023 Transthyretin-like family Lund et al 2002 Fig4 Mount 15, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, Reinke et al 2004, GO categories, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched Y5H2B.5 Y5H2B.C cyp-32B1; Y5H2B.5; 5C678; CE26222; NM_071197; WBGene00021167; WP:CE26222 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y60C6A.1 Y60C6A.1 Y60C6A.1; Y60C6A.A; 5F261; CE22671; WBGene00022013; WP:CE22671 Jones et al 2001 Dauer specific genes P<0.05, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y62H9A.7 Y62H9A.7 Y62H9A.7; CE19243; WBGene00013395; WP:CE19243; XM504 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y69E1A.7 Y69E1A.7 aqp-3; Y69E1A.7; Y69E1A.G; 4L724; CE22814; NM_069643; WBGene00000171; WP:CE22814 Node #42:: Putative transmembrane channel protein, has strong similarity to human aquaporins ::LG Y69E1A.7/Y69E1A.G()::Y69E1A.7::52747 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y69H2.3 Y69H2.5 Y69H2.3; Y69H2.3a.1; Y69H2.3a.2; Y69H2.3d.1; Y69H2.3d.2; 5T136; CE32543; CE32544; CE32545; CE32546; WBGene00013481; WP:CE32543; WP:CE32544; WP:CE32545; WP:CE32546 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S6 removed genes of contamination, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y6E2A.4 9Y6E2A.3, Y6E2A.4 Y6E2A.4; 5Q194; CE31125; WBGene00012398; WP:CE31125 ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 Resveratrol regulate WT, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y71H2_386.B Y71H2_386.B Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y73B6A.4 Y73B6A.A smg-7; Y73B6A.4; 4H506; CE25584; NM_068632; WBGene00004885; WP:CE25584 Reinke et al 2004, list of genes in cluster F, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched Y73F8A.6 Y73F8A.F ccg-1; Y73F8A.6; 4Q36; CE25600; NM_070441; WBGene00000370; WP:CE25600 Reinke et al 2004, mixed sperm soma, Reinke et al 2004, fem3 enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y75B12B.8 Y75B12B.8 Y75B12B.8; 5P682; WBGene00013570 Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y77E11A.2 Y77E11A_3443.E Y77E11A.2; 4C223; CE23076; WBGene00022307; WP:CE23076 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 Y9C9A.16 Y9C9A_54.A Y9C9A.16; 4F728; CE39879; WBGene00021183; WP:CE39879 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC239.6 ZC239.6 ZC239.6; ZC239.6.1; ZC239.6.2; ZC239.6.3; 2D501; CE32765; WBGene00022569; WP:CE32765 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC373.4 ZC373.4 ZC373.4; CE02377; WBGene00013869; WP:CE02377; XK682 Node #39::ZC373.4 Serine/threonine protein kinase, has strong similarity to human and D. melanogaster myosin light chain kinase (MLCK) and human DAP-kinase involved in gamma interferon-induced cell death ::LG X(9816290)::ZC373.4::22575 Jones et al 2001 Non dauer genes P<0.05, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC376.3 ZC376.3 ZC376.3; 5O650; CE15197; WBGene00013875; WP:CE15197 carboxylesterase Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, GO categories, Reinke et al 2004, herm soma enriched genes, Reinke et al 2004, list of genes in cluster B, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC395.5 ZC395.5 ZC395.5; 3G357; CE01441; WBGene00022597; WP:CE01441 Murphy et al 2003 Fig2 Class1 elongate lifespan, Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Romagnolo et al 2002 Fig3b Unkown, Romagnolo et al 2002 Fig5 genes in let-60 timecour, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched ZC410.5 ZC410.5 ZC410.5; 4J855; CE15209; CE35703; WBGene00013882; WP:CE15209; WP:CE35703 microfilarial antigen like Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC412.3 ZC412.3 ZC412.3; ZC412.3.1; ZC412.3.2; ZC412.3.3; 5P350; CE15215; WBGene00013884; WP:CE15215 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, IVb male soma enriched genes, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched ZC449.4 ZC449.4 ZC449.4; CE37688; WBGene00022614; WP:CE37688; XF646 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC455.5 ZC455.5 ugt-4; ZC455.5; 5N274; CE06594; WBGene00013905; WP:CE06594 UDP-glucuronysltransferase ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC506.4 ZC506.4 mgl-1; ZC506.4; CE01682; NM_077273; WBGene00003232; WP:CE01682; XK586 Node #42::mgl-1/ZC506.4 Member of the 7 transmembrane receptor (metabotropic glutamate family) protein family ::LG X(9722133)::ZC506.4::24972 metatrophic glutamate receptor McCarroll et al 2004 SFig1-4 conserved w/ Drosoph, Romagnolo et al 2002 Fig3b signaling, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC64.2 ZC64.2 ZC64.2; ZC64.2.1; ZC64.2.2; CE05048; WBGene00022515; WP:CE05048; XE458 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, wt herm vs wt herm enriched gen, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZC8.6 M03F4.1 ZC8.6; CE38988; WBGene00022501; WP:CE38988; XF592 Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, mixed oogenesis soma, Reinke et al 2004, list of genes in cluster B, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK1248.16 ZK1248.16 lec-5; ZK1248.16; 2G130; CE29634; NM_062762; WBGene00002268; WP:CE29634 Node #38::lec-5/ZK1248.16 Member of the galactoside-binding lectin protein family ::LG 2(5828932)::ZK1248.16::25029 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, fem3 enriched genes, Reinke et al 2004, mixed sperm soma, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched ZK1320.10 ZK1320.10 nlp-11; ZK1320.10; ZK1320.10.1; ZK1320.10.2; 2J978; CE01699; NM_063690; WBGene00003749; WP:CE01699 Reinke et al 2004, list of genes in cluster A, Reinke et al 2004, list of genes in cluster order, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK20.6 ZK20.6#2 nep-1; ZK20.6; ZK20.6.1; ZK20.6.2; 2L946; CE39118; NM_064089; WBGene00013926; WP:CE39118 ZK20.6 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; ZK20.6 is closely paralogous to F18A12.8, and orthologous to CG9761 in Drosophila melanogaster; more generally, ZK20.6 falls into a group of proteins that includes the classical neprilysins found in mammals (e.g., PEX [OMIM:307800] and the enkephalin cleaving enzymes). neprilysin Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK381.5 ZK381.5, ZK381.6, ZK381.7 ZK381.5; 4H744; CE31750; CE31751; WBGene00022727; WP:CE31750; WP:CE31751 Node #41::ZK381.5 Protein with similarity to LIM-domain containing proteins, has moderate similarity to the C-terminus of H. sapiens Hs.129917/LMO6 gene product ::LG 4(6628164)::ZK381.5::27692 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK470.2 ZK470.3 ZK470.2; ZK470.2b.1; ZK470.2b.2; ZK470.2b.3; CE05086; CE05087; CE31269; WBGene00022745; WP:CE05086; WP:CE05087; WP:CE31269; XE765 Shen et al 2005 T1 hif-1indepen hypoxia, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK622.2 ZK622.2 gur-5; ZK622.2; 2F577; CE30225; NM_062591; WBGene00001806; WP:CE30225 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK632.10 ZK632.10 ZK632.10; 3K918; CE02385; WBGene00014017; WP:CE02385 ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK84.6 ZK84.6 ins-6; ZK84.6; 2G287; CE15253; NM_062797; WBGene00002089; WP:CE15253 ins-6 encodes predicted type-beta insulin-like molecule that lacks a C peptide domain; expressed throughout development and in some neurons beginning in the two-fold elongated embryo. 7TM chemoreceptor, ins family Romagnolo et al 2002 Fig3b signaling, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK849.2 ZK849.2#2 ZK849.2; CE16748; CE38477; WBGene00014101; WP:CE16748; WP:CE38477 PDZ domain (Also known as DHR or GLGF). Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK856.6 ZK856.6 ZK856.6; 5K679; CE06663; WBGene00014107; WP:CE06663 Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK858.4 ZK858.4#2 mel-26; ZK858.4; 1J711; CE30580; NM_060048; WBGene00003209; WP:CE30580 mel-26 encodes a MATH and BTB/POZ domain-containing protein that functions as a novel substrate-specific adaptor of the CUL-3-containing E3 ubiquitin ligase; MEL-26 is required maternally for formation of mitotic spindles in the early embryo, and as a component of a ubiquitin ligase complex, for degradation of the microtubule-severing protein MEI-1 at the meiosis to mitosis transition; MEL-26 is also required maternally for embryonic morphogenesis; since MEL-26 contains a meprin-associated Traf homology (MATH) domain, it might be involved in apoptosis. kruppel-like zinc-finger protein Reinke et al 2004, fem1 enriched genes, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, oogenesis enriched genes, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, list of genes in cluster E, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched ZK892.2 ZK892.2 nlt-1; ZK892.2; 2K290; CE01725; NM_063760; WBGene00003773; WP:CE01725 Node #42::nlt-1/ZK892.2 Protein with moderate similarity to a region of sterol carrier proteins, including H. sapiens SCP2 and Drosophila ScpX gene products ::LG 2(9991868)::ZK892.2::31938 lipid transfer protein Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster B, ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0 ZK945.1 ZK945.1 ZK945.1; 2K387; CE01731; WBGene00014164; WP:CE01731 esterase ViswanathanM et al 2005 S2 sir-2.1 regulated, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 Resveratrol regulate WT, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S4 genes pass two-wayANOVA P0