Menzel et al 2001 T3 CYP genes, 38 genes

Gene list file name:Menzel2001.T3_80CYPgenes.txt
Type of gene identifier:Cosmid name
Description:Menzel et al 2001 Table3: 80 CYP genes  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0304.3 B0304.3 P W All gene names: cyp-23A1; B0304.3; 2E805; CE27050; NM_062396; WBGene00015135; WP:CE27050 WormBase description: The B0304.3 gene encodes a homolog of the human gene CYP7B1, which when mutated leads to giant cell hepatitis (OMIM:231100). WormBase CDS description: Cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, Menzel et al 2001  T3 CYP genes, Reinke et al                                
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster B, Wang et al 2003  S5                              
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA                                                           

B0331.1 B0331.1 P W All gene names: cyp-29A4; B0331.1; 5K137; CE15551; NM_073089; WBGene00007140; WP:CE15551 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes                                   

C01F6.3 C01F6.3 P W All gene names: ccp-31A1; cyp-31A1; C01F6.3; 4J866; NM_069185; WBGene00000374
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              list of genes in cluster order, Reinke et al 2004,                                 
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C12D5.7 C12D5.7 P W All gene names: cyp-33A1; C12D5.7; 5I160; CE06809; NM_072587; WBGene00015709; WP:CE06809 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Kwon et al 2004 T1 late-induction                                          
                                              Ethanol-response, Menzel et al 2001  T3 CYP genes,                                 
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b Oxidation                                              

C25E10.2 C25E10.2 P W All gene names: cyp-33B1; C25E10.2; 5J521; CE35248; NM_072941; WBGene00016092; WP:CE35248 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 Dauer Enriched, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

C26F1.2 C26F1.2 P W All gene names: cyp-32A1; C26F1.2; 5I263; CE39228; NM_072608; WBGene00016147; WP:CE39228 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C36A4.1 C36A4.1 P W All gene names: cyp-25A1; C36A4.1; 3E921; CE37711; NM_065374; WBGene00007963; WP:CE37711 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Menzel et al 2001  T3 CYP genes, ReichertK et                            
                                              al 2005  T3 xenobiotic downregulated, Reinke et al                                 
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, GO categories, Reinke et al 2004, herm soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 daf-16                                 
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

C36A4.2 C36A4.2 P W All gene names: cyp-25A2; C36A4.2; 3E925; CE37617; NM_065375; WBGene00007964; WP:CE37617 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, McCarroll et al 2004  SFig1-4 conserved w/                                   
                                              Drosoph, Menzel et al 2001  T3 CYP genes, Reinke et al                             
                                              2004, herm soma enriched genes, Reinke et al 2004, GO                              
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C36A4.3 C36A4.3 P W All gene names: cyp-25A3; C36A4.3; 3E928; NR_000185; WBGene00014697
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes                                   

C36A4.6 C36A4.6 P W All gene names: cyp-25A4; C36A4.6; 3E940; CE03074; NM_065378; WBGene00007967; WP:CE03074 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C44C10.2 C44C10.2 P W All gene names: cyp-29A1; C44C10.2; WBGene00008083; XM324
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Menzel et al 2001  T3 CYP genes, Reinke et al                              
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, list of genes in cluster C                                                   

C45H4.17 C45H4.17 P W All gene names: cyp-33C2; C45H4.17; Y5H2B.F; 5C663; CE25818; NM_071193; WBGene00016697; WP:CE25818 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

C45H4.2 C45H4.2 P W All gene names: cyp-33C1; C45H4.2; 5C655; CE08736; NM_071191; WBGene00016686; WP:CE08736 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F08F3.7 F08F3.7 P W All gene names: ccp-14A5; cyp-14A5; F08F3.7; 5F900; CE09262; NM_072034; WBGene00000373; WP:CE09262 WormBase description: ccp-14A5 encodes a member of the cytochrome P450 family. WormBase CDS description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Menzel et al 2001  T3 CYP genes,                                 
                                              ReichertK et al 2005 T1 xenobiotic induced P450, Reinke                            
                                              et al 2004, fem3 enriched genes, Reinke et al 2004,                                
                                              mixed sperm soma, Reinke et al 2004, GO categories,                                
                                              Romagnolo et al 2002  Fig3b Oxidation, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, Wang et al 2003  S4                                
                                              TransientList, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

F14F7.2 F14F7.2 P W All gene names: cyp-13A11; F14F7.2; 3O111; CE15822; NM_067303; WBGene00008809; WP:CE15822 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F14F7.3 F14F7.3 P W All gene names: cyp-13A12; F14F7.3; 3O113; CE15823; NM_067304; WBGene00008810; WP:CE15823 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Menzel et al 2001  T3 CYP genes,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F42A6.4 F42A6.4 P W All gene names: cyp-25A5; F42A6.4; 4E88; CE17056; NM_067921; WBGene00018326; WP:CE17056 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

H02I12.8 H02I12.8 P W All gene names: cyp-31A2; H02I12.8; 4M169; CE37719; NM_069751; WBGene00010354; WP:CE37719 WormBase description: Cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, Menzel et al 2001  T3 CYP genes, Reinke et al                                
                                              2004, fem1 enriched genes, Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, oogenesis                               
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, GO categories, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

K06B9.1 K06B9.1 P W All gene names: cyp-25A6; K06B9.1; 4E961; CE07339; NM_068111; WBGene00019438; WP:CE07339 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, Menzel et al 2001  T3 CYP genes, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

K06G5.2 K06G5.2 P W All gene names: cyp-13B2; K06G5.2; CE37720; NM_077968; WBGene00010606; WP:CE37720; XO845 WormBase description: Cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, GO                                  
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E                                                                                  

K09A11.2 K09A11.2 P W All gene names: cyp-14A1; K09A11.2; CE03473; NM_077802; WBGene00010705; WP:CE03473; XN884 WormBase description: cytochrome p450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, Menzel et al 2001  T3 CYP genes, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol                                                     

K09A11.3 K09A11.3 P W All gene names: cyp-14A2; K09A11.3; CE03474; NM_077803; WBGene00010706; WP:CE03474; XN886 WormBase description: Cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K09A11.4 K09A11.4 P W All gene names: cyp-14A3; K09A11.4; CE03475; NM_077804; WBGene00010707; WP:CE03475; XN890 WormBase description: cytochrome p450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R04D3.1 R04D3.1 P W All gene names: cyp-14A4; R04D3.1; CE06222; NM_077806; WBGene00011009; WP:CE06222; XN898 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes                                   

T10B9.1 T10B9.1 P W All gene names: ccp-13A4; cyp-13A4; dod-1; T10B9.1; 2K84; CE01654; NM_063710; WBGene00011671; WP:CE01654 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Menzel et al 2001  T3 CYP genes, Murphy et al                            
                                              2003  Fig2 Class1 elongate lifespan, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                    
                                              TransientList, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

T10B9.10 T10B9.10 P W All gene names: ccp-13A7; cyp-13A7; T10B9.10; 2K91; CE01655; NM_063713; WBGene00000372; WP:CE01655 WormBase description: ccp-13A7 encodes a homolog of cytochrome P450 proteins; these proteins are membrane proteins with a heme prosthetic group that catalyse the synthesis of steroid hormones (and bile salts), and also detoxify foreign substances (xenobiotic compounds). WormBase CDS description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes                                   

T10B9.2 T10B9.2 P W All gene names: cyp-13A5; T10B9.2; 2K86; CE01656; NM_063711; WBGene00011672; WP:CE01656 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              herm soma enriched genes, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated, Wang et al 2003  S4 TransientList,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

T10B9.3 T10B9.3 P W All gene names: cyp-13A6; T10B9.3; 2K88; CE01657; NM_063712; WBGene00011673; WP:CE01657 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Menzel et al 2001  T3 CYP genes,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

T10B9.4 T10B9.4 P W All gene names: cyp-13A8; T10B9.4; 2K92; CE13541; NM_063714; WBGene00011674; WP:CE13541 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes                                   

T10B9.5 T10B9.5 P W All gene names: cyp-13A3; T10B9.5; 2K78; CE01658; NM_063709; WBGene00011675; WP:CE01658 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, McCarroll et al 2004  SFig1-4 conserved w/                                   
                                              Drosoph, Menzel et al 2001  T3 CYP genes, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

T10B9.6 T10B9.6 P W All gene names: cyp-13A9; T10B9.6; 2K82; NR_000874; WBGene00014838
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes                                   

T10B9.7 T10B9.7 P W All gene names: cyp-13A2; T10B9.7; 2K74; CE01659; NM_063708; WBGene00011676; WP:CE01659 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, mixed sperm soma, Reinke et al 2004, herm soma                               
                                              enriched genes, Reinke et al 2004, GO categories,                                  
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              Romagnolo et al 2002  Fig3b Oxidation                                              

T10B9.8 T10B9.8 P W All gene names: cyp-13A1; T10B9.8; 2K70; CE01660; NM_063707; WBGene00011677; WP:CE01660 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes                                   

T13C5.1 T13C5.1 P W All gene names: cyp-22A1; daf-9; mig-8; T13C5.1; CE27206; CE30451; NM_171699; WBGene00000905; WP:CE27206; WP:CE30451; XG819 WormBase description: daf-9 encodes a cytochrome P450 of the CYP2 subfamily that by homology is predicted to function as a steroidogenic or fatty acid hydroxylase; DAF-9 likely functions cell nonautonomously in hypodermal and neuronal cells to produce, for the DAF-12 nuclear receptor, a lipophilic hormone whose presence is necessary for bypassing entry into the alternative L3/dauer larval stage and promoting reproductive development; in regulating dauer formation, daf-9 acts downstream of the DAF-2/insulin/IGF receptor and the DAF-7/TGFbeta ligand, suggesting that at least two of the signaling pathways that control dauer formation converge, in part, upon daf-9; in addition, daf-9 activity is required for gonadal cell migration; a DAF-9::GFP fusion is expressed in the XXXL/R head cells at all developmental stages, in hypodermal cells from the L2 to L4 larval stages, and in the spermatheca of adult hermaphrodites. WormBase CDS description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ReichertK et al 2005 T1 xenobiotic induced P450,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T19B10.1 T19B10.1 P W All gene names: cyp-29A2; T19B10.1; 5L699; CE06455; NM_073446; WBGene00011830; WP:CE06455 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, McCarroll et al 2004  SFig5 conserved w/ yeast,                              
                                              Menzel et al 2001  T3 CYP genes, Reinke et al 2004,                                
                                              list of genes in cluster order, Reinke et al 2004, list                            
                                              of genes in cluster C, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

Y17G9B.3 Y17G9B.3 P W All gene names: cyp-31A3; Y17G9B.3; Y17G9B.H; 4F527; CE24183; NM_068236; WBGene00021200; WP:CE24183 WormBase description: The Y17G9B.3 gene encodes a homolog of the human gene CYP7B1, which when mutated leads to pseudovitamin D deficiency rickets (OMIM:264700). WormBase CDS description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Menzel et al 2001  T3 CYP genes,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E                                      

Y38C9B.1 Y38C9B.1 P W All gene names: cyp-29A3; Y38C9B.1; Y38C9B.C; 5A539; CE35365; NM_070729; WBGene00021412; WP:CE35365 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes, Wang                             
                                              et al 2003  S6 removed genes of contamination                                      

ZK1320.4 ZK1320.4 P W All gene names: cyp-13A10; ZK1320.4; 2J952; CE37736; NM_063684; WBGene00014254; WP:CE37736 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0