Jones et al 2001 Dauer specific genes P<0.05, 333 genes

Gene list file name:Jones2001.Dauer_specific_P0.05.txt
Type of gene identifier:Cosmid name
Description:Jones et al 2001 Dauer specific genes P<0.05  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AC3.4 AC3.4 P W All gene names: pqn-2; AC3.4; 5K863; CE37872; NM_073267; WBGene00004098; WP:CE37872 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

B0024.3 B0024.3 P W All gene names: B0024.3; 5K767; CE31281; WBGene00007096; WP:CE31281
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

B0238.7 B0238.7 P W All gene names: B0238.7; 5F736; CE07697; WBGene00015071; WP:CE07697 WormBase description: carboxylesterase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

B0240.1 B0240.1 P W All gene names: rhr-2; B0240.1; B0240.1.1; B0240.1.2; 5M208; CE05172; NM_073560; WBGene00004359; WP:CE05172 WormBase description: rhr-2 encodes a predicted transmembrane protein with similarity to human Rh blood group antigens proposed to function in inorganic ion transport and metabolism; the role of RHR-2 in C. elegans development or behavior remains unclear, as loss of RHR-2 function via RNA-mediated interference does not result in any abnormalities. WormBase CDS description: erythrocyte plasma membrane glycoprotein like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

B0252.1 B0252.1 P W All gene names: B0252.1; 2H213; CE02417; WBGene00015087; WP:CE02417 WormBase description: Tyrosine-protein kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S4 TransientList, Wang et al 2003  S7                             
                                              SAGE genes in the dataset, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S8 SAGE genes in                              
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

B0294.1 B0294.1 P W All gene names: B0294.1; CE19656; WBGene00015117; WP:CE19656; XC512
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

B0361.4 B0361.4 P W All gene names: B0361.4; 3I361; CE38768; WBGene00015158; WP:CE38768
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

B0361.9 B0361.9 P W All gene names: B0361.9; 3I388; CE00838; WBGene00015163; WP:CE00838
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

B0414.2 B0414.2 P W All gene names: mab-2; rnt-1; run-1; B0414.2; 1G363; CE24772; NM_059278; WBGene00004393; WP:CE24772; run WormBase description: rnt-1 is homologous to RUNT and LOZENGE in Drosophila melanogaster, and to human RUNX1 (AML1, OMIM:151385, mutated in familial platelet disorder and acute myeloid leukemia), RUNX2 (OMIM:600211, mutated in cleidocranial dysplasia), and RUNX3 (OMIM:600210).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

B0495.5 B0495.5 P W All gene names: B0495.5; B0495.5.1; B0495.5.2; 2H986; CE29948; WBGene00015204; WP:CE29948
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

B0564.6 B0564.6 P W All gene names: B0564.6; 4N895; CE05180; CE05182; WBGene00007206; WP:CE05180; WP:CE05182 WormBase description: Leucine Rich Repeat (2 copies) (2 domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S5 genes common to feeding ANOVA, Wang et al 2003  S3                              
                                              genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                 
                                              genes in the dauer exit                                                            

C01G8.8 C01G8.8 P W All gene names: C01G8.8; WBGene00043094
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C02E11.1 C02E11.1 P W All gene names: C02E11.1; C02E11.1a.1; C02E11.1a.2; 5B508; CE28528; CE32040; WBGene00015344; WP:CE28528; WP:CE32040
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit, Wang et al 2003  S7 SAGE                             
                                              genes in the dataset                                                               

C02F4.2 C02F4.2 P W All gene names: cna-1; pph-3; pph2B-A; tax-6; C02F4.2; 4L258; CE07853; CE33593; PP2B; WBGene00006527; WP:CE07853; WP:CE33593 WormBase description: tax-6 encodes an ortholog of calcineurin A that is required for inhibition and adaptation of several sensory neurons and for the normal regulation of egg-laying by serotonin; TAX-6 stimulates transcription of rcn-1, and binds RCN-1 protein if free Ca[2+] is present; in general, calcineurin positively regulates calcium-dependent signaling.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

C03D6.3 C03D6.3 P W All gene names: cel-1; C03D6.3; 1K243; CE05197; CE32300; NM_060168; WBGene00000466; WP:CE05197; WP:CE32300 WormBase description: cel-1 encodes a mRNA capping enzyme, with a N-terminal region with RNA triphosphatase activity and a C-terminal region containing motifs found in yeast and vaccinia virus capping enzyme guanylytransferases; cel-1 is required for embryonic viability, body morphology, and vulval development.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster F, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, intrinsic, Reinke et al 2004, wt vs glp-4                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt male                              
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

C03F11.2 C03F11.2 P W All gene names: C03F11.2; CE35379; WBGene00015388; WP:CE35379; XG10
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C06E7.2 C06E7.2 P W All gene names: C06E7.2; C06E7.2.1; C06E7.2.2; 4G607; CE33516; WBGene00015539; WP:CE33516
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S8 SAGE genes in the dauer exit                                        

C06E8.5 C06E8.5 P W All gene names: C06E8.5; 3I92; CE00801; WBGene00015544; WP:CE00801 WormBase description: bacterial permeability-increasing protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

C06G3.5 C06G3.5 P W All gene names: C06G3.5; C06G3.5b.1; C06G3.5b.2; 4H791; CE07981; CE26867; WBGene00015551; WP:CE07981; WP:CE26867 WormBase description: C06G3.5 is orthologous to human ADENOSINE DEAMINASE (ADA; OMIM:102700), which when mutated leads to severe combined immunodeficiency.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C07A12.1 C07A12.1 P W All gene names: ham-2; C07A12.1; CE07992; CE39669; CE39670; WBGene00001821; WP:CE07992; WP:CE39669; WP:CE39670; XF177 WormBase description: The ham-2 gene encodes a C2H2 zinc finger-containing protein required for proper migration of the hermaphrodite-specific neurons (HSNs) and proper attachment of the pharynx to the nose; HAM-2 is expressed in the nuclei of the HSNs during migration, and acts downstream of EGL-5, a posterior group Hox protein, in HSN specification; HAM-2 acts redundantly with UNC-86 to downregulate UNC-43 expression in the HSNs after migration is complete.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C07B5.3 C07B5.3 P W All gene names: C07B5.3; CE00893; WBGene00007408; WP:CE00893; XK140
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Lund et al 2002  Fig4 Mount 15, Reinke et al                               
                                              2004, IVb male soma enriched genes, Wang et al 2003  S7                            
                                              SAGE genes in the dataset, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 Dauer Enriched,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit, Wang                             
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

C08C3.3 C08C3.3 P W All gene names: lin-21; mab-5; C08C3.3; 3I868; CE25765; NM_066294; WBGene00003102; WP:CE25765 WormBase description: mab-5 encodes a homeodomain transcription factor related to the Antennapedia, Ultrabithorax, and abdominal-A family of homeodomain proteins; during postembryonic development, mab-5 is required cell autonomously for specification of posterior cell fates, including hypodermal and neuronal fates, programmed cell deaths, cell proliferation and migration, and fate specification of the male-specific copulatory muscles and sensory rays; in addition, ectopic expression of mab-5 is sufficient to alter cell fates, such as direction of migration or sensory ray identity; in regions of the body where mab-5 expression overlaps with that of lin-39, another C. elegans HOM-C gene, the two genes appear to either compensate for one another's activity or act combinatorially to promote cell fates distinct from those where either gene is expressed alone; a mab-5:lacZ reporter fusion is expressed in cells in the posterior body region from the mid-gastrulation stage of embryogenesis through larval and adult stages; further, antibody staining reveals that MAB-5 expression in the V5 lineage is dynamic, switching on and off several times, while expression in V6 is continuous throughout most of the L1-L3 larval stages; early MAB-5 expression is V6 is dependent upon wild-type activity of pal-1, which encodes the C. elegans Caudal ortholog.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C08H9.6 C08H9.6 P W All gene names: C08H9.6; 2K164; CE02992; WBGene00007466; WP:CE02992 WormBase description: chitinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S8 SAGE                               
                                              genes in the dauer exit, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

C09B9.1 C09B9.1 P W All gene names: C09B9.1; 4F805; CE06793; WBGene00015626; WP:CE06793
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C09F5.2 C09F5.2 P W All gene names: C09F5.2; 3B271; CE01774; WBGene00015648; WP:CE01774
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C10C6.1 C10C6.1 P W All gene names: kin-4; C10C6.1; 4M211; CE39132; NM_069760; WBGene00002192; WP:CE39132 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S7 SAGE genes in the dataset                                                 

C10H11.5 C10H11.5 P W All gene names: ugt-27; C10H11.5; 1F293; CE08094; WBGene00015694; WP:CE08094 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b Detoxification,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

C11D2.2 C11D2.2 P W All gene names: C11D2.2; 4G953; CE16843; WBGene00015700; WP:CE16843 WormBase description: protease
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

C12C8.1 C12C8.1 P W All gene names: hsp-70; C12C8.1; 1J898; CE08110; NM_060084; WBGene00002026; WP:CE08110 WormBase description: hsp-70 encodes a member of the hsp70 family. WormBase CDS description: heat shock protein 70
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress,                                 
                                              Jones et al 2001  Dauer specific genes P<0.05, Kwon et                             
                                              al 2004  T1 Class1 rapid-induction Ethanol, Lund et al                             
                                              2002 Aging time course Fig2C heatshock, Lund et al 2002                            
                                               Fig1 aging-regulated genes, Romagnolo et al 2002                                  
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 UPR genes,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  Fig6A Ethanol HS, Wang et al                              
                                              2003  S8 SAGE genes in the dauer exit, Wang et al 2003                             
                                              S7 SAGE genes in the dataset                                                       

C12D8.4 C12D8.4 P W All gene names: C12D8.4; 5K706; CE05268; WBGene00007535; WP:CE05268 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, intrinsic, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, ViswanathanM et al 2005  S2 sir-2.1                                    
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S8 SAGE genes in the dauer                                 
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset,                               
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0, Wang et                            
                                              al 2003  S4 Dauer Enriched                                                         

C14A4.12 C14A4.12 P W All gene names: C14A4.12; 2K907; CE02141; CE30599; WBGene00007562; WP:CE02141; WP:CE30599
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C14B4.2 C14B4.2 P W All gene names: C14B4.2; 5T806; CE18500; WBGene00007583; WP:CE18500
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C14B9.8 C14B9.8 P W All gene names: C14B9.8; 3J230; CE38273; WBGene00015754; WP:CE38273 WormBase description: C14B9.8 is orthologous to the human gene PHOSPHORYLASE KINASE, LIVER, ALPHA-2 SUBUNIT (PHKA2; OMIM:306000), which when mutated leads to liver glycogenosis. WormBase CDS description: Phosphorylase kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, list                             
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S7 SAGE genes in                               
                                              the dataset, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit                                                                         

C16C10.8 C16C10.8 P W All gene names: C16C10.8; C16C10.8.1; C16C10.8.2; 3F252; CE01499; WBGene00007628; WP:CE01499 WormBase description: cell growth regulating protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C17G1.5 C17G1.5 P W All gene names: C17G1.5; CE31416; WBGene00007652; WP:CE31416; XK563
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C17H12.10 C17H12.10 P W All gene names: C17H12.10; 4H573; CE16870; WBGene00015935; WP:CE16870
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C18A11.2 C18A11.2 P W All gene names: C18A11.2; CE04033; WBGene00015948; WP:CE04033; XI685
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

C18D4.4 C18D4.4 P W All gene names: C18D4.4; 5S8; CE15634; WBGene00007674; WP:CE15634
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Lund et al 2002  Fig4 Mount 15, Wang et al 2003                            
                                               S7 SAGE genes in the dataset, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S8 SAGE genes in the dauer                              
                                              exit, Wang et al 2003  S4 genes pass two-wayANOVA P0                               

C18G1.9 C18G1.9 P W All gene names: C18G1.9; 5F242; CE17425; WBGene00015987; WP:CE17425
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

C18H2.4 C18H2.4 P W All gene names: C18H2.4; 3I789; CE00762; WBGene00015991; WP:CE00762 WormBase description: C18H2.4 is orthologous to the human gene GLOMULIN (FAP48; OMIM:601749), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, herm sperm, Reinke et al                                
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, Reinke et al 2004, wt vs                                
                                              glp-4 enriched genes, Reinke et al 2004, GO categories,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S7 SAGE genes in the dataset                                                 

C18H9.7 C18H9.7 P W All gene names: rpy-1; C18H9.7; 2G994; CE01807; NM_062964; WBGene00004507; WP:CE01807 WormBase description: rpy-1 is orthologous to the human gene 43KDA ACETYLCHOLINE RECEPTOR-ASSOCIATED PROTEIN (RAPSN; OMIM:601592), which when mutated leads to congenital myasthenic syndrome. WormBase CDS description: postsynaptic protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Lund et al 2002  Fig3B neuro-specific genes,                               
                                              Lund et al 2002  Aging time course Fig3A muscle,                                   
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 Early                               
                                              genes, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

C23G10.6 C23G10.6 P W All gene names: C23G10.6; 3H282; CE04052; WBGene00016013; WP:CE04052 WormBase description: UDP-glucosyltransferase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ReichertK et al 2005  T1 xenobiotic induced                                
                                              UDP-gl, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C24B5.1 C24B5.1 P W All gene names: C24B5.1; 5J675; CE36981; WBGene00016044; WP:CE36981
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

C25E10.5 C25E10.5 P W All gene names: C25E10.5; 5J513; CE06867; WBGene00016095; WP:CE06867
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C25H3.10 C25H3.10 P W All gene names: C25H3.10; 2F988; CE27090; CE37612; WBGene00016119; WP:CE27090; WP:CE37612
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 late-repression                                        
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Romagnolo et al 2002  Fig3b Unkown, Romagnolo et                            
                                              al 2002 Fig5 genes in let-60 timecour, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S3  genes pass                             
                                              one-way ANOVA, Wang et al 2003  S8 SAGE genes in the                               
                                              dauer exit, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset, Wang et al 2003  S4 Dauer Enriched, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

C27A7.4 C27A7.4 P W All gene names: che-11; mev-4; C27A7.4; 5M626; CE39480; NM_073646; WBGene00000490; WP:CE39480 WormBase description: che-11 encodes a large, unfamiliar protein with orthologs in vertebrates and arthropods (e.g., KIAA0590 and CG11838-PA) and in Chlamydomonas (IFT140), as well as distant similarity to OSM-1 and ZK520.1; che-11 is required for normal synthesis of sensory cilia (via intraflagellar transport) in sensory neurons, osmotic avoidance, and dauer formation.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

C27C12.7 C27C12.7 P W All gene names: dpf-2; C27C12.7; CE05324; NM_078060; WBGene00001055; WP:CE05324; XP455 WormBase description: dipeptidyl aminopeptidase like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              herm soma enriched genes, ViswanathanM et al 2005  S2                              
                                              daf-16 Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S4 TransientList, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0                                                               

C27H5.2 C27H5.2 P W All gene names: C27H5.2; 2H449; CE27098; CE29191; CE32150; CE32151; WBGene00016172; WP:CE27098; WP:CE29191; WP:CE32150; WP:CE32151
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S7 SAGE genes in the                                   
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

C28F5.2 C28F5.2 P W All gene names: C28F5.2; 2H798; CE01816; WBGene00016184; WP:CE01816
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C29F5.7 C29F5.7 P W All gene names: C29F5.7; 2G596; CE02514; WBGene00016215; WP:CE02514
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S8 SAGE                               
                                              genes in the dauer exit, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

C30B5.6 C30B5.6 P W All gene names: C30B5.6; 2G508; CE32155; WBGene00016247; WP:CE32155
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

C30F12.3 C30F12.3 P W All gene names: C30F12.3; 1H546; CE16883; WBGene00016262; WP:CE16883
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C30F12.5 C30F12.5 P W All gene names: C30F12.5; 1H568; CE16885; WBGene00016264; WP:CE16885
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S7 SAGE                             
                                              genes in the dataset, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S8 SAGE genes in the                               
                                              dauer exit, Wang et al 2003  S4 genes pass two-wayANOVA                            
                                              P0                                                                                 

C30G12.7 C30G12.7 P W All gene names: puf-8; C30G12.7; 2H586; CE37486; NM_063122; WBGene00004244; WP:CE37486
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, IVb                             
                                              male soma enriched genes, Wang et al 2003  S7 SAGE                                 
                                              genes in the dataset, Wang et al 2003  S8 SAGE genes in                            
                                              the dauer exit                                                                     

C33A12.7 C33A12.7 P W All gene names: C33A12.7; 4K272; CE15664; WBGene00007886; WP:CE15664
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                              
                                              Enriched                                                                           

C33D9.3 C33D9.3 P W All gene names: C33D9.3; 4J556; CE33758; CE33759; WBGene00007898; WP:CE33758; WP:CE33759
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

C33H5.4 C33H5.4 P W All gene names: klp-10; C33H5.4; 4I565; CE04148; CE34733; WBGene00002221; WP:CE04148; WP:CE34733 WormBase description: klp-10 encodes a predicted kinesin motor protein that while similar to the Xenopus and human klp2 kinesins, lacks the switch I motif critical for interaction with ATP; although RNAi experiments purportedly targeting klp-10 result in meiotic defects and embryonic lethality, loss of klp-10 activity via a deletion allele results in no obvious abnormalities, suggesting that the reported RNAi phenotypes are due to targeting of the highly similar klp-18 gene; klp-10 expression levels appear to be below the level of detection of RT-PCR, Northern, and Western analyses.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset                                                                            

C34E7.2 C34E7.2 P W All gene names: C34E7.2; NM_077746; WBGene00043173
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C36H8.3 C36H8.3 P W All gene names: flp-9; C36H8.3; 4N520; CE39568; NM_070035; WBGene00001452; WP:CE39568 WormBase description: flp-9 encodes a predicted FMRFamide-like peptide neurotransmitter that inhibits action potentials in the pharyngeal muscle when applied to the pharynx of dissected worms and inhibits movement when injected into A. suum; expressed at highest levels prior to adulthood.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, IVb male soma enriched genes, Wang                              
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

C39B5.4 C39B5.4 P W All gene names: fbxa-38; C39B5.4; 3D315; CE23580; WBGene00016522; WP:CE23580 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

C39D10.2 C39D10.2 P W All gene names: C39D10.2; CE04181; WBGene00016530; WP:CE04181; XI509
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, wt herm vs wt herm enriched                             
                                              gen, Reinke et al 2004, IVb male soma enriched genes,                              
                                              Reinke et al 2004, GO categories, Wang et al 2003  S3                              
                                              genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                 
                                              genes in the dauer exit, Wang et al 2003  S7 SAGE genes                            
                                              in the dataset, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

C41G7.5 C41G7.5 P W All gene names: ahr-1; C41G7.5; C41G7.5b.1; C41G7.5b.2; C41G7.5b.3; 1K107; CE20561; CE38293; NM_060129; WBGene00000096; WP:CE20561; WP:CE38293 WormBase description: ahr-1 encodes an aryl hydrocarbon receptor (ligand-activated basic helix-loop-helix transcription factor) ortholog that biochemically resembles its vertebrate relatives (OMIM:600253) which mediate the carcinogenic and teratogenic effects of environmental toxins; AHR-1 binds HSP90 tightly, and forms a dimer with AHA-1 that binds DNA fragments containing the mammalian xenobiotic response element; AHR-1 is expressed in neurons, and may play a role in neuronal migration.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C42D4.9 C42D4.9 P W All gene names: str-220; C42D4.9; 4H932; CE24842; NM_068728; WBGene00006251; WP:CE24842 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C45E1.1 C45E1.1 P W All gene names: nhr-64; C45E1.1; 1D677; CE39696; CE39697; WBGene00003654; WP:CE39696; WP:CE39697 WormBase description: nhr-64 encodes a conserved nuclear receptor that is a member of the NR2 subfamily of nuclear receptors that contains Drosophila and human HNF4 (OMIM:600281, mutations in human HNF4A are associated with Type I MODY (maturity-onset diabetes of the young)); by homology, NHR-64 is predicted to function as a transcription factor that may activate or repress transcription in response to a hormonal signal; however, as loss of nhr-64 activity via RNAi does not result in any obvious abnormalities, the precise role of NHR-64 in C. elegans development and/or behavior is not yet known; nhr-64 is broadly expressed and detected in anterior and posterior neurons, the ventral nerve cord, the pharynx, gut, and hypodermis.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C45G9.10 C45G9.10 P W All gene names: C45G9.10; 3G148; CE01851; CE37887; WBGene00016681; WP:CE01851; WP:CE37887
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, wt herm vs wt herm enriched                             
                                              gen, Reinke et al 2004, IVb male soma enriched genes,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

C46C11.3 C46C11.3 P W All gene names: C46C11.3; CE04218; WBGene00016706; WP:CE04218; XF249
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S8 SAGE genes in                              
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset, Wang et al 2003  S4 genes pass two-wayANOVA P0                            

C46F9.1 C46F9.1 P W All gene names: math-22; C46F9.1; 2C165; CE32330; WBGene00016717; WP:CE32330
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, herm soma enriched genes, Wang et al                            
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

C46F9.4 C46F9.4 P W All gene names: math-25; C46F9.4; 2C159; CE39482; WBGene00016720; WP:CE39482
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

C46H11.10 C46H11.10 P W All gene names: C46H11.10; C46H11.10b.1; C46H11.10b.2; 1F622; CE34272; CE34273; WBGene00016734; WP:CE34272; WP:CE34273
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C47D2.1 C47D2.1 P W All gene names: C47D2.1; CE06961; WBGene00016738; WP:CE06961; XI831
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, IVb male soma enriched                                  
                                              genes, Wang et al 2003  S7 SAGE genes in the dataset,                              
                                              Wang et al 2003  S8 SAGE genes in the dauer exit, Zhang                            
                                              et al 2002, T1 mec-3 dependent genes                                               

C47G2.4 C47G2.4 P W All gene names: C47G2.4; 2L582; CE02167; WBGene00008165; WP:CE02167
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

C48B4.2 C48B4.2 P W All gene names: rom-2; C48B4.2; 3K680; CE37757; NM_066719; WBGene00004401; WP:CE37757 WormBase description: Rhomboid
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C48B4.6 C48B4.6 P W All gene names: C48B4.6; 3K646; CE00482; WBGene00008169; WP:CE00482
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 daf-16 Resveratrol, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset                                                                            

C48D1.3 C48D1.3 P W All gene names: cho-1; C48D1.3; C48D1.3.1; C48D1.3.2; 4N974; CE27109; NM_070138; WBGene00000501; WP:CE27109 WormBase description: cho-1 encodes a high-affinity choline transporter orthologous to members of the sodium-dependent glucose transporter family; CHO-1 is expressed in cholinergic neurons. WormBase CDS description: choline transporter
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C49A9.4 C49A9.4 P W All gene names: C49A9.4; CE37492; WBGene00016758; WP:CE37492 WormBase description: C49A9.4 is orthologous to the human gene CYSTATIN B (STEFIN B) (CSTB; OMIM:601145), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C49C3.8 C49C3.8 P W All gene names: C49C3.8; 4S281; CE19747; WBGene00008198; WP:CE19747
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C49H3.10 C49H3.10 P W All gene names: imb-6; C49H3.10; 4I682; CE29726; NM_068919; WBGene00002080; WP:CE29726 WormBase description: imb-6 encodes an importin-beta-like protein orthologous to vertebrate Exportin-t, a specific mediator of tRNA export from the nucleus; IMB-6 is predicted to function by binding tRNAs directly in the presence of the RAN-1 GTPase and facilitating their nucleocytoplasmic transport; in C. elegans, loss of imb-6 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities. WormBase CDS description: importin beta, nuclear transport factor
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S8 SAGE genes in the dauer                                 
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

C50A2.3 C50A2.3 P W All gene names: C50A2.3; 4B896; CE17581; WBGene00016797; WP:CE17581
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C52B11.2 C52B11.2 P W All gene names: tag-303; C52B11.2; CE04258; WBGene00016871; WP:CE04258; XB927 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C53A5.4 C53A5.4 P W All gene names: tag-191; C53A5.4; 5P16; CE08953; WBGene00007049; WBGene00008264; WP:CE08953 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004, GO                             
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              D, Reinke et al 2004, shared sperm, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit, Wang et al 2003  S6                                  
                                              removed genes of contamination, Wang et al 2003  S7                                
                                              SAGE genes in the dataset                                                          

C53B4.3 C53B4.3 P W All gene names: C53B4.3; C53B4.3.1; C53B4.3.2; 4J736; CE37333; WBGene00008273; WP:CE37333 WormBase description: C53B4.3 is orthologous to the human gene UNKNOWN (PROTEIN FOR MGC:23098) (SLC22A1L; OMIM:602631), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C54D10.10 C54D10.10 P W All gene names: C54D10.10; 5M926; CE05506; WBGene00008304; WP:CE05506 WormBase description: serine protease inhibitor
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

C54F6.11 C54F6.11 P W All gene names: srb-19; C54F6.11; 5H994; CE38166; NM_072535; WBGene00016928; WP:CE38166 WormBase description: 7TM chemoreceptor, srb family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

C54G4.5 C54G4.5 P W All gene names: C54G4.5; 1I573; CE23613; WBGene00008315; WP:CE23613
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

D1007.15 D1007.15 P W All gene names: D1007.15; 1F131; CE34284; WBGene00017010; WP:CE34284
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

D1086.2 D1086.2 P W All gene names: D1086.2; 5O578; CE09060; WBGene00008389; WP:CE09060
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

D2021.2 D2021.2 P W All gene names: tag-233; D2021.2; CE34286; CE34287; WBGene00017047; WBGene00044071; WP:CE34286; WP:CE34287; XJ173
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

D2021.4 D2021.4 P W All gene names: D2021.4; CE02584; WBGene00017048; WP:CE02584; XJ164
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

D2024.7 D2024.7 P W All gene names: D2024.7; 4I6; CE04296; WBGene00017054; WP:CE04296
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

D2045.7 D2045.7 P W All gene names: D2045.7; 3L565; CE37761; WBGene00008424; WP:CE37761 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, fem3 enriched genes,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

DH11.4 DH11.4 P W All gene names: DH11.4; 2I285; CE36121; WBGene00008437; WP:CE36121 WormBase description: synaptotagamin carboxyl terminus
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

E01G4.5 E01G4.5 P W All gene names: E01G4.5; 2N763; CE23623; WBGene00008447; WP:CE23623
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, IVb                              
                                              male soma enriched genes, Reinke et al 2004, GO                                    
                                              categories, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

E02A10.3 E02A10.3 P W All gene names: E02A10.3; 5N67; CE27751; WBGene00008453; WP:CE27751 WormBase description: calmodulin-like protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S8 SAGE                               
                                              genes in the dauer exit, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

EGAP2.1 EGAP2.1 P W All gene names: EGAP2.1; 2F523; CE35268; WBGene00017147; WP:CE35268
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F02E9.5 F02E9.5 P W All gene names: F02E9.5; 1J2; CE23628; WBGene00008530; WP:CE23628
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F07A5.5 F07A5.5 P W All gene names: sue-1; F07A5.5; 1H940; CE05558; NM_059682; WBGene00006306; WP:CE05558 WormBase description: C2 domain
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F07C3.9 F07C3.9 P W All gene names: F07C3.9; 5J734; CE07030; WBGene00017197; WP:CE07030
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, IVb male soma enriched                                  
                                              genes, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F07C7.1 F07C7.1 P W All gene names: F07C7.1; CE07032; WBGene00017206; WP:CE07032; XJ813
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F07G11.5 F07G11.5 P W All gene names: srj-32; F07G11.5; 5H766; CE38168; NM_072455; WBGene00005617; WP:CE38168 WormBase description: 7TM chemoreceptor, srj family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F07H5.7 F07H5.7 P W All gene names: F07H5.7; 2J84; CE03156; WBGene00008558; WP:CE03156
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F08E10.3 F08E10.3 P W All gene names: srh-123; F08E10.3; 5R951; CE18573; NM_075023; WBGene00005341; WP:CE18573
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F08G2.5 F08G2.5 P W All gene names: F08G2.5; 2O122; CE19777; WBGene00008577; WP:CE19777
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Jones et al 2001  Dauer specific genes                                
                                              P<0.05, Kwon et al 2004 T1 late-induction                                          
                                              Ethanol-response, ViswanathanM et al 2005  Fig6A                                   
                                              Ethanol HS, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

F08H9.4 F08H9.4 P W All gene names: F08H9.4; 5O946; CE09268; WBGene00008592; WP:CE09268 WormBase description: F08H9.4 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the excretory canal and ventral nerve-cord neurons), and its expression is only mildly induced by heat shock; however, F08H9.4 expression is increased by heat shock, is induced in a new tissue type (intestine) by heat shock, and probably aids heat shock resistance, since F08H9.4(RNAi) animals die as embryos in heat shock at a higher rate than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 Class1 rapid-induction                                 
                                              Ethanol, Lund et al 2002 Aging time course Fig2C                                   
                                              heatshock, Romagnolo et al 2002  Fig2a heat shock, Shen                            
                                              et al 2005  T1 hif-1indepen hypoxia, Wang et al 2003                               
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S6                               
                                              removed genes of contamination, Wang et al 2003  S7                                
                                              SAGE genes in the dataset                                                          

F09F3.5 F09F3.5 P W All gene names: F09F3.5; 5O333; CE20661; WBGene00008627; WP:CE20661 WormBase description: peroxidase like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F09F7.1 F09F7.1 P W All gene names: F09F7.1; 3G663; CE29258; WBGene00017299; WP:CE29258
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, IVb male soma enriched                                  
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F09F9.3 F09F9.3 P W All gene names: F09F9.3; CE04348; WBGene00017308; WP:CE04348; XE734
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F09G8.2 F09G8.2 P W All gene names: tag-198; F09G8.2; 3J359; CE20662; WBGene00007056; WBGene00017318; WP:CE20662; YLS2
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F11C1.1 F11C1.1 P W All gene names: F11C1.1; CE03186; WBGene00008690; WP:CE03186; XN606
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b Unkown,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination, Wang et al                             
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

F11D11.4 F11D11.4 P W All gene names: F11D11.4; 5T233; CE15795; WBGene00008699; WP:CE15795
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F12A10.8 F12A10.8 P W All gene names: F12A10.8; 2F786; CE31784; WBGene00017397; WP:CE31784
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

F13B12.3 F13B12.3 P W All gene names: F13B12.3; 4L205; CE35467; WBGene00008731; WP:CE35467
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F13E6.2 F13E6.2 P W All gene names: F13E6.2; CE31475; WBGene00008746; WP:CE31475; XL288 WormBase description: adenylate kinase like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b Metabolism,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F13H8.8 F13H8.8 P W All gene names: F13H8.8; 2G556; CE35477; WBGene00017441; WP:CE35477
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, herm sperm, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              spermatogenesis enriched genes, Reinke et al 2004, fem3                            
                                              enriched genes, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

F14B8.4 F14B8.4 P W All gene names: F14B8.4; CE02647; WBGene00017446; WP:CE02647; XH516
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F14B8.6 F14B8.6 P W All gene names: F14B8.6; CE02649; WBGene00017448; WP:CE02649; XH548
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

F14D2.11 F14D2.11 P W All gene names: F14D2.11; 2D626; CE16986; WBGene00017459; WP:CE16986
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, list of                             
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

F14D7.4 F14D7.4 P W All gene names: F14D7.4; 5O778; WBGene00008791
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F14D7.5 F14D7.5 P W All gene names: F14D7.5; 5O780; CE09383; WBGene00008792; WP:CE09383
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F16H6.7 F16H6.7 P W All gene names: F16H6.7; 5S682; CE18603; WBGene00008897; WP:CE18603
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              A, Reinke et al 2004, list of genes in cluster order,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F17C11.4 F17C11.4 P W All gene names: F17C11.4; 5L433; CE05651; WBGene00008915; WP:CE05651
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Lund et al 2002  Fig4 Mount 15, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S7 SAGE genes                              
                                              in the dataset, Wang et al 2003  S8 SAGE genes in the                              
                                              dauer exit                                                                         

F18A1.6 F18A1.6 P W All gene names: F18A1.6; F18A1.6b.1; F18A1.6b.2; 2H950; CE04406; CE27977; WBGene00017547; WP:CE04406; WP:CE27977
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S7 SAGE genes in                            
                                              the dataset, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit                                                                         

F18A12.8 F18A12.8 P W All gene names: F18A12.8; 2D712; CE23669; CE32629; WBGene00017557; WP:CE23669; WP:CE32629 WormBase description: F18A12.8 encodes two isoforms of a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F18A12.8A is closely paralogous to ZK20.6, and orthologous to CG9761 in Drosophila melanogaster; F18A12.8 is homologous, and possibly orthologous, to human ECE1 (OMIM:600423; mutation leads to Hirschsprung disease, cardiac defects, and autonomic dysfunction); more generally, F18A12.8A falls into a group of proteins that includes the classical neprilysins found in mammals (e.g., PEX [OMIM:307800] and the enkephalin cleaving enzymes).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Shen et al 2005  T1 hif-1indepen hypoxia, Wang                             
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

F19C6.3 F19C6.3 P W All gene names: F19C6.3; CE01556; WBGene00008952; WP:CE01556; XK624 WormBase description: EGF-like domain
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F19F10.10 F19F10.10 P W All gene names: F19F10.10; 5I58; CE09490; WBGene00017606; WP:CE09490
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F19F10.7 F19F10.7 P W All gene names: F19F10.7; 5I42; CE36828; WBGene00017603; WP:CE36828
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F20C5.4 F20C5.4 P W All gene names: F20C5.4; 4J531; CE03241; WBGene00008969; WP:CE03241 WormBase description: Yeast YCY4 like protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F20D6.8 F20D6.8 P W All gene names: F20D6.8; 5I644; CE07112; WBGene00017637; WP:CE07112 WormBase description: RAS-like protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

F21C3.2 F21C3.2 P W All gene names: tyr-3; F21C3.2; 1H852; CE17689; NM_059654; WBGene00009001; WP:CE17689 WormBase description: tyrosinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S6 removed genes of contamination,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F22B7.9 F22B7.9 P W All gene names: F22B7.9; 3J742; CE29771; WBGene00017698; WP:CE29771
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 late-repression                                        
                                              Ethanol-respon, Lund et al 2002  Fig4 Mount 15,                                    
                                              Romagnolo et al 2002  Fig3b Unkown, Romagnolo et al                                
                                              2002 Fig5 genes in let-60 timecour, Wang et al 2003  S3                            
                                               genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                
                                              genes in the dauer exit, Wang et al 2003  S7 SAGE genes                            
                                              in the dataset, Wang et al 2003  S4 Dauer Enriched,                                
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

F22D6.12 F22D6.12 P W All gene names: gly-19; F22D6.12; F22D6.12.1; F22D6.12.2; 1H689; CE29590; NM_059614; WBGene00001644; WP:CE29590 WormBase description: gly-19 encodes a protein similar to 2/I N-acetylglucosaminyltransferase; it is probably coexpressed with gly-18 in the anal sphincter muscle. WormBase CDS description: beta-1,6-N-acetylglucosaminyltransferase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F22E12.4 F22E12.4 P W All gene names: egl-9; F22E12.4; F22E12.4a.1; F22E12.4a.2; F22E12.4b.1; F22E12.4b.2; 5K955; CE27755; CE31342; CE38327; CE38328; NM_171533; WBGene00001178; WP:CE27755; WP:CE31342; WP:CE38327; WP:CE38328 WormBase description: egl-9 encodes a dioxygenase that negatively regulates hypoxia inducible factor (hif-1) by hydroxylating prolyl residues in HIF-1.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F22F1.3 F22F1.3 P W All gene names: F22F1.3; CE39923; WBGene00017715; WP:CE39923; XI780 WormBase description: mouse CREB-binding protein; human transcriptional adaptor protein p300
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F23H11.8 F23H11.8 P W All gene names: pef-1; F23H11.8; F23H11.8b.1; F23H11.8b.2; 3B538; CE27999; CE30662; NM_171080; WBGene00003969; WP:CE27999; WP:CE30662 WormBase description: pef-1 encodes an ortholog of the rhodopsin-specific serine/threonine phosphatase RdgC in D. melanogaster and of RdgC-related proteins in humans (PPEF1 and PPEF2; OMIM:300109 and OMIM:602256); PEF-1 has a EF-hand calcium-binding domain, and is peripherally bound to the plasma membrane by myristoylation and palmitoylation; pef-1 has no known mutant phenotype, but is expressed in several anterior amphid neurons, from what appears to be the 3-fold embryo stage onward; on the basis of its expression and its orthology, PEF-1 may negatively regulate signalling through serpentine receptors such as STR-2.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F25E5.4 F25E5.4 P W All gene names: F25E5.4; 5H929; CE32873; WBGene00017785; WP:CE32873
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F25H9.4 F25H9.4 P W All gene names: bath-39; F25H9.4; 5N941; CE09661; WBGene00009137; WP:CE09661
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F26A10.1 F26A10.1 P W All gene names: F26A10.1; CE02691; WBGene00017813; WP:CE02691; XI245
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F26D11.10 F26D11.10 P W All gene names: inx-4; opu-4; F26D11.10; 5I436; CE17712; NM_072649; WBGene00002126; WP:CE17712
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F26F12.5 F26F12.5 P W All gene names: F26F12.5; 5G344; CE07150; CE32881; WBGene00017836; WP:CE07150; WP:CE32881
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F26H9.8 F26H9.8 P W All gene names: F26H9.8; 1J903; CE09713; WBGene00009178; WP:CE09713 WormBase description: UDP-glucose:glycoprotein glucosyltransferase like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              GO categories, Reinke et al 2004, fem3 enriched genes,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F31E9.1 F31E9.1 P W All gene names: F31E9.1; 5R798; CE15935; WBGene00009295; WP:CE15935 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Lund et al 2002  Fig1 aging-regulated genes,                               
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, herm soma enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F32B5.7 F32B5.7 P W All gene names: F32B5.7; F32B5.7.1; F32B5.7.2; 1D242; CE30526; WBGene00017980; WP:CE30526
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F33D4.3 F33D4.3 P W All gene names: flp-13; F33D4.3; 4I462; CE17033; NM_068854; WBGene00001456; WP:CE17033
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F33E2.2 F33E2.2 P W All gene names: dlk-1; F33E2.2; 1N158; CE36153; CE36154; CE36155; WBGene00001008; WP:CE36153; WP:CE36154; WP:CE36155 WormBase description: dlk-1 encodes a homolog of mammalian mitogen-activated protein kinase kinase kinase 12; DLK-1 is dispensable for embryonic development and gross morphology in mass RNAi screens.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F35B3.7 F35B3.7 P W All gene names: F35B3.7; CE39930; WBGene00018033; WP:CE39930; XR648
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F35D11.4 F35D11.4 P W All gene names: F35D11.4; 2E893; CE32648; WBGene00018045; WP:CE32648
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S4 Climbing, Wang et al 2003  S7 SAGE genes in                               
                                              the dataset, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

F35E2.1 F35E2.1 P W All gene names: F35E2.1; 1M328; CE17771; WBGene00009409; WP:CE17771
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F35E8.9 F35E8.9 P W All gene names: F35E8.9; 5Q398; CE15959; WBGene00009422; WP:CE15959
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

F36H12.1 F36H12.1 P W All gene names: F36H12.1; 4G59; CE09973; WBGene00018117; WP:CE09973
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F36H5.6 F36H5.6 P W All gene names: clec-19; F36H5.6; 2C33; CE09963; WBGene00018105; WP:CE09963 WormBase description: 7TM chemoreceptor, clec family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F36H9.6 F36H9.6 P W All gene names: srt-41; F36H9.6; 5C276; CE38071; NM_071105; WBGene00018114; WP:CE38071 WormBase description: 7TM chemoreceptor, srt family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

F37B1.4 F37B1.4 P W All gene names: gst-15; F37B1.4; 2N902; CE09991; NM_064459; WBGene00001763; WP:CE09991 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2                                           
                                              Glut-S-transferase, Jones et al 2001  Dauer specific                               
                                              genes P<0.05, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination, Wang et al 2003  S7 SAGE genes in the                               
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

F38A6.1 F38A6.1 P W All gene names: Ce-fkh-1; fkh-1; pha-4; F38A6.1; 5V229; CE15998; NM_075605; WBGene00004013; WP:CE15998 WormBase description: Fork head domain, eukaryotic transcription factors
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F38B2.2 F38B2.2 P W All gene names: F38B2.2; CE02216; WBGene00009529; WP:CE02216; XL896
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F38E11.2 F38E11.2 P W All gene names: hsp-12.6; hsp-20; F38E11.2; 4K210; CE03294; NM_069267; WBGene00002013; WBGene00002022; WP:CE03294 WormBase description: alpha-B-crystallin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Kwon et al 2004 T1 transient-induction Ethanol-res,                                
                                              Murphy et al 2003  Fig2 Class1 elongate lifespan, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit, Wang et al 2003                             
                                              S7 SAGE genes in the dataset, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

F40F8.3 F40F8.3 P W All gene names: F40F8.3; 2L423; CE05843; WBGene00009576; WP:CE05843
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F40G12.5 F40G12.5 P W All gene names: F40G12.5; 5O750; CE10184; WBGene00009600; WP:CE10184
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F40H7.4 F40H7.4 P W All gene names: srx-101; F40H7.4; 2D978; CE36435; NM_062214; WBGene00005992; WP:CE36435 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, intrinsic, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, Wang et al 2003  S7 SAGE genes in                              
                                              the dataset, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit                                                                         

F41C6.7 F41C6.7 P W All gene names: F41C6.7; CE35533; WBGene00018280; WP:CE35533; XH502
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F41E6.10 F41E6.10 P W All gene names: F41E6.10; 5J90; CE10262; WBGene00018291; WP:CE10262
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F41E6.7 F41E6.7 P W All gene names: F41E6.7; 5J78; CE10256; WBGene00018288; WP:CE10256
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F43C11.8 F43C11.8 P W All gene names: F43C11.8; 2C623; CE23723; WBGene00018385; WP:CE23723
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

F44B9.1 F44B9.1 P W All gene names: dpf-6; F44B9.1; 3J129; CE30989; CE30990; CE30991; NM_171203; NM_171204; NM_171205; WBGene00001059; WP:CE30989; WP:CE30990; WP:CE30991 WormBase description: acylamino-acid-releasing enzyme
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F44C8.8 F44C8.8 P W All gene names: nhr-133; F44C8.8; 5C690; CE10392; NM_071201; WBGene00003723; WP:CE10392 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F44D12.9 F44D12.9 P W All gene names: F44D12.9; F44D12.9.1; F44D12.9.2; 4K785; CE39252; WBGene00009686; WP:CE39252
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F44G4.8 F44G4.8 P W All gene names: dep-1; F44G4.8; 2J296; CE03335; NM_063524; WBGene00009717; WP:CE03335 WormBase description: protein tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F45E6.2 F45E6.2 P W All gene names: atf-6; F45E6.2; CE17828; NM_077693; WBGene00000222; WP:CE17828; XN103 WormBase description: YIB9 like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, wt herm vs wt male enriched                             
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F46F6.2 F46F6.2 P W All gene names: F46F6.2; CE31703; NM_077341; WBGene00009793; WP:CE31703; XL19 WormBase description: Protein kinase C terminal domain
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F46G11.3 F46G11.3 P W All gene names: tag-257; F46G11.3; CE04586; WBGene00018516; WP:CE04586; XG403 WormBase description: serine/threonine-protein kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F47G3.3 F47G3.3 P W All gene names: F47G3.3; CE04608; WBGene00018578; WP:CE04608; XC995
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, wt                               
                                              herm vs wt male enriched gen, Reinke et al 2004, list                              
                                              of genes in cluster E, ViswanathanM et al 2005  S2                                 
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S8 SAGE genes in the                               
                                              dauer exit, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset, Wang et al 2003  S4 Early genes, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0                                                

F48B9.4 F48B9.4 P W All gene names: nlp-37; F48B9.4; CE30276; WBGene00018590; WP:CE30276; XC781
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S8 SAGE                               
                                              genes in the dauer exit, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

F52E1.3 F52E1.3 P W All gene names: F52E1.3; 5I873; CE04631; WBGene00018693; WP:CE04631
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F52E1.9 F52E1.9 P W All gene names: F52E1.9; 5I874; CE35324; WBGene00018697; WP:CE35324
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F53A2.2 F53A2.2 P W All gene names: sdz-20; F53A2.2; 3O425; CE16094; WBGene00009950; WP:CE16094
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F53A3.4 F53A3.4 P W All gene names: pqn-41; F53A3.4; 3D27; CE28443; NM_065077; WBGene00004128; WP:CE28443 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F53H8.2 F53H8.2 P W All gene names: arr-1; F53H8.2; CE28831; NM_075782; WBGene00000195; WP:CE28831; XB571 WormBase description: arr-1 encodes the C. elegans beta-arrestin ortholog (OMIM:107940, 107941, mice lacking beta-arrestin family members display defects in G protein-coupled receptor desensitization); by homology, ARR-1 is predicted to be a multifunctional adaptor protein that interacts with intracellular signaling molecules as well as activated and phosphorylated G protein-coupled and TGF-beta receptors to: 1) downregulate receptor signaling, 2) promote receptor endocytosis, and 3) activate MAP kinase- and Src-dependent signaling pathways; in C. elegans, loss of arr-1 function via mutation or RNAi does not result in any obvious abnormalities and, in particular, does not appear to affect chemosensation or odorant discrimination; however, animals doubly mutant for arr-1 and grk-2, which encodes a G protein-coupled receptor kinase, are sick and slow growing; an arr-1 transcriptional reporter is expressed in neurons, including the ASH chemosensory neurons, and in the intestine WormBase CDS description: beta-arrestin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F54B8.3 F54B8.3 P W All gene names: fbxa-69; F54B8.3; 5Q294; CE16105; WBGene00010018; WP:CE16105 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Lund et al 2002  Fig4 Mount 15, Wang et al 2003                            
                                               S7 SAGE genes in the dataset, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S8 SAGE genes in the dauer                              
                                              exit, Wang et al 2003  S4 genes pass two-wayANOVA P0                               

F54B8.6 F54B8.6 P W All gene names: srbc-48; F54B8.6; 5Q299; CE16108; NM_074550; WBGene00010020; WP:CE16108 WormBase description: 7TM receptor, srbc family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F54C9.7 F54C9.7 P W All gene names: F54C9.7; 2I865; CE02257; WBGene00010043; WP:CE02257
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F54D1.5 F54D1.5 P W All gene names: gtl-2; F54D1.5; 4M45; CE28563; NM_069717; WBGene00001796; WP:CE28563 WormBase description: gtl-2 encodes a predicted receptor-activated calcium channel and represents a family of calcium channels, the other two family members being gtl-1 and gon-2.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16                                        
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S8 SAGE genes in the dauer                                 
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset,                               
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0, Wang et                            
                                              al 2003  S4 Dauer Enriched                                                         

F54F2.7 F54F2.7 P W All gene names: F54F2.7; 3J896; CE29395; WBGene00018835; WP:CE29395
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F55A3.2 F55A3.2 P W All gene names: F55A3.2; 1L373; CE17112; WBGene00018848; WP:CE17112
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F55B12.4 F55B12.4 P W All gene names: F55B12.4; F55B12.4.1; F55B12.4.2; F55B12.4.3; CE26815; WBGene00010089; WP:CE26815 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: poly(A) polymerase like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                            
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset                                                                            

F55C5.3 F55C5.3 P W All gene names: F55C5.3; 5M746; CE11154; CE36595; WBGene00006677; WP:CE11154; WP:CE36595 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F56A8.4 F56A8.4 P W All gene names: F56A8.4; 3O353; CE16124; WBGene00010140; WP:CE16124
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, intrinsic, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, Wang et al 2003  S7 SAGE genes in                              
                                              the dataset, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit                                                                         

F56F11.1 F56F11.1 P W All gene names: F56F11.1; 3D977; CE11276; WBGene00018988; WP:CE11276
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F57B10.8 F57B10.8 P W All gene names: F57B10.8; 1H124; CE11312; WBGene00019005; WP:CE11312
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset                                                                            

F58B4.3 F58B4.3 P W All gene names: F58B4.3; 5L409; CE06013; WBGene00010236; WP:CE06013
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

F58D12.1 F58D12.1 P W All gene names: F58D12.1; 5O533; CE11368; WBGene00010249; WP:CE11368
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F58D5.2 F58D5.2 P W All gene names: F58D5.2; F58D5.2b.1; F58D5.2b.2; 1M658; CE34487; CE34488; WBGene00010242; WP:CE34487; WP:CE34488
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

F59B10.3 F59B10.3 P W All gene names: F59B10.3; 2K803; CE35884; WBGene00010319; WP:CE35884 WormBase description: cadherin transmembranous domain
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit, Wang et al 2003  S4 genes pass two-wayANOVA                            
                                              P0                                                                                 

F59E12.4 F59E12.7 P W All gene names: npl-4.1; F59E12.4; F59E12.7; 2F923; CE28572; CE28573; WBGene00019120; WP:CE28572; WP:CE28573
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

F59F5.5 F59F5.5 P W All gene names: F59F5.5; CE03446; WBGene00010344; WP:CE03446; XL165
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

H01A20.1 H01A20.1 P W All gene names: nhr-3; H01A20.1; CE18798; NM_078022; WBGene00003602; WP:CE18798; XP179 WormBase description: nhr-3 encodes a member of the superfamily of nuclear receptors which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain; nhr-3 has been identified and characterised as a gene affected by ethanol exposure in a microarray analysis of all C. elegans ORFs. WormBase CDS description: Zinc finger, C4 type (two domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

H02I12.3 H02I12.3 P W All gene names: tag-89; H02I12.3; 4M161; CE16160; WBGene00006459; WP:CE16160 WormBase description: 7 transmembrane receptor (rhodopsin family)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

H03E18.2 H03E18.2 P W All gene names: H03E18.2; CE11560; WBGene00019149; WP:CE11560; XJ132
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

H10D18.2 H10D18.2 P W All gene names: H10D18.2; 5E293; CE23800; WBGene00019178; WP:CE23800
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Reinke et al 2004, wt herm vs wt herm                                    
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                              
                                              Enriched                                                                           

H10D18.3 H10D18.3 P W All gene names: srw-6; H10D18.3; 5E291; CE23801; NM_071653; WBGene00005753; WP:CE23801 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Wang et al 2003  S8 SAGE genes in the dauer                              
                                              exit                                                                               

H10D18.4 H10D18.4 P W All gene names: H10D18.4; 5E290; CE20952; WBGene00019179; WP:CE20952 WormBase description: extracellular protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

H38K22.3 H38K22.3 P W All gene names: tag-131; H38K22.3; 3F409; CE18831; WBGene00006478; WP:CE18831
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, mixed oogenesis soma, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S7 SAGE                               
                                              genes in the dataset, Wang et al 2003  S8 SAGE genes in                            
                                              the dauer exit                                                                     

JC8.4 JC8.4 P W All gene names: JC8.4; 4O9; CE17987; WBGene00010436; WP:CE17987
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, Wang et al 2003  S8 SAGE genes in the                                
                                              dauer exit, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset                                                                            

K01G12.2 K01G12.2 P W All gene names: K01G12.2; WBGene00010482
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

K01G5.6 K01G5.6 P W All gene names: rib-2; K01G5.6; 3L835; CE16196; NM_066967; WBGene00004361; WP:CE16196 WormBase description: The rib-2 gene encodes an ortholog of human EXT2, which when mutated leads to hereditary multiple exostoses, type II (OMIM:133701). WormBase CDS description: MULTIPLE EXOSTOSES HOMOLOG 2
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K02E7.11 K02E7.11 P W All gene names: K02E7.11; 2B364; CE28409; WBGene00019315; WP:CE28409
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, wt herm vs wt herm enriched                             
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

K03A1.4 K03A1.4 P W All gene names: K03A1.4; CE04712; CE39580; WBGene00019352; WP:CE04712; WP:CE39580; XH914 WormBase description: calmodulin calcium-binding sites
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

K03E6.5 K03E6.5 P W All gene names: unc-1; unc-102; K03E6.5; CE28585; NM_075801; WBGene00006741; WP:CE28585; XB678 WormBase description: unc-1 encodes a homolog of human stomatin (OMIM:133090; deficient in stomatocytosis); UNC-1 protein is found in major nerve tracts, particularly in the nerve ring; unc-1 is required for anesthetic sensitivity; unc-24, which also encodes a stomatin homolog, is epistatic to unc-1 and is required for UNC-1 localization to the nerve ring. WormBase CDS description: Erythrocyte band 7 intergral membrane protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

K04A8.5 K04A8.5 P W All gene names: K04A8.5; 5H31; CE11708; WBGene00019376; WP:CE11708 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, ViswanathanM et al 2005  S2 daf-16                                       
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S8 SAGE genes in the dauer                                 
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset,                               
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0, Wang et                            
                                              al 2003  S4 Dauer Enriched                                                         

K04B12.2 K04B12.2 P W All gene names: K04B12.2; K04B12.2b.1; K04B12.2b.2; K04B12.2b.3; 2O722; CE35576; CE35577; WBGene00010550; WP:CE35576; WP:CE35577
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K06A1.5 K06A1.5 P W All gene names: K06A1.5; K06A1.5.1; K06A1.5.2; 2G742; CE39948; WBGene00019427; WP:CE39948
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

K06A4.2 K06A4.2 P W All gene names: K06A4.2; 5J969; CE06106; WBGene00010592; WP:CE06106
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

K07G5.5 K07G5.5 P W All gene names: K07G5.5; 1H747; CE06133; WBGene00010644; WP:CE06133
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K08B12.3 K08B12.3 P W All gene names: K08B12.3; 5G719; CE11914; WBGene00019522; WP:CE11914 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K09C4.6 K09C4.6 P W All gene names: K09C4.6; CE04734; WBGene00019551; WP:CE04734; XD893
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K09E4.4 K09E4.4 P W All gene names: K09E4.4; K09E4.4.1; K09E4.4.2; 2O406; CE32692; WBGene00010722; WP:CE32692 WormBase description: K09E4.4 is orthologous to the human gene N-ACETYLGALACTOSAMINIDASE, ALPHA- (NAGLU; OMIM:104170), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Jones et al 2001  Dauer specific genes                                
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S3  genes pass one-way ANOVA,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit, Wang                             
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                               
                                              S4 Dauer Enriched                                                                  

K09H11.6 K09H11.6 P W All gene names: K09H11.6; 5G212; CE35340; WBGene00019603; WP:CE35340
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

K10B4.1 K10B4.1 P W All gene names: K10B4.1; 2A429; CE12062; WBGene00019613; WP:CE12062 WormBase description: peroxidase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

K10D2.1 K10D2.1 P W All gene names: K10D2.1; 3G283; CE02013; CE39597; WBGene00019627; WP:CE02013; WP:CE39597
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Lund et al 2002   Fig3C Germline-intrinsic,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Reinke et al 2004, list of genes in                             
                                              cluster E, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

K10D2.7 K10D2.7 P W All gene names: K10D2.7; 3G285; CE02019; WBGene00019633; WP:CE02019
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

K10H10.9 K10H10.9 P W All gene names: K10H10.9; 2O798; CE28603; WBGene00010764; WP:CE28603
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

K11D12.9 K11D12.9 P W All gene names: K11D12.9; 5F522; CE29517; WBGene00019649; WP:CE29517 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

M01A8.1 M01A8.1 P W All gene names: M01A8.1; 3K349; CE00275; WBGene00010795; WP:CE00275
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S8 SAGE genes in                              
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset, Wang et al 2003  S4 genes pass two-wayANOVA P0                            

M01F1.7 M01F1.7 P W All gene names: M01F1.7; 3E612; CE33673; WBGene00010813; WP:CE33673 WormBase description: M01F1.7 encodes a phosphatidylinositol transfer protein, with a C-terminal DDHD domain, that is orthologous to RETINAL DEGENERATION B (RDGB) in D. melanogaster, as well as other orthologs in mammals (NIR1-3); M01F1.7 is expressed in the egg membrane, the germline, the spermatheca and three pairs of head neurons; while M01F1.7 would be expected to mediate PIP(2) signalling in either neuronal function or cytokinesis, it has not yet had a published mutant phenotype, and has no obvious function in mass RNAi assays. WormBase CDS description: RETINAL DEGENERATION B PROTEIN (PROBABLE CALCIUM TRANSPORTER RDGB)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster B, Wang et al 2003  S8 SAGE                               
                                              genes in the dauer exit, Wang et al 2003  S7 SAGE genes                            
                                              in the dataset                                                                     

M03F8.2 M03F8.2 P W All gene names: pst-1; M03F8.2; 5G431; CE38399; CE38400; CE38401; NM_171463; NM_171464; WBGene00004206; WP:CE38399; WP:CE38400; WP:CE38401
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S4 Climbing, Wang et al 2003  S7 SAGE genes in                               
                                              the dataset, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

M04D8.6 M04D8.6 P W All gene names: xbx-3; M04D8.6; 3L123; CE00579; NM_066826; WBGene00010864; WP:CE00579
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

M04G7.1 M04G7.1 P W All gene names: M04G7.1; 4B209; CE17190; WBGene00019772; WP:CE17190
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

M199.2 M199.2 P W All gene names: M199.2; 4P875; CE39754; WBGene00010951; WP:CE39754 WormBase description: MSP (Major sperm protein) domain.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

R02C2.3 R02C2.3 P W All gene names: tag-40; R02C2.3; 5A726; CE35355; WBGene00006419; WP:CE35355
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

R02E12.6 R02E12.6 P W All gene names: R02E12.6; R02E12.6.1; R02E12.6.2; CE30099; WBGene00019830; WP:CE30099; XE628
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

R03H10.3 R03H10.3 P W All gene names: R03H10.3; WBGene00043460
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

R03H10.7 R03H10.7 P W All gene names: R03H10.7; 2E466; CE02843; WBGene00019859; WP:CE02843
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b Unkown,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

R04E5.1 R04E5.1 P W All gene names: R04E5.1; WBGene00043462
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

R06B9.1 R06B9.1 P W All gene names: R06B9.1; 2O55; CE35900; WBGene00011052; WP:CE35900 WormBase description: dihydroxyvitamin D3-induced protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

R08D7.4 R08D7.4 P W All gene names: R08D7.4; R08D7.4.1; R08D7.4.2; 3K63; CE33291; WBGene00011144; WP:CE33291
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

R09A8.5 R09A8.5 P W All gene names: R09A8.5; CE03541; WBGene00011154; WP:CE03541; XN256
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

R119.5 R119.5 P W All gene names: R119.5; 1A862; CE18159; WBGene00020090; WP:CE18159
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

R11G11.1 R11G11.1 P W All gene names: nhr-132; R11G11.1; 5B13; CE33297; NM_070836; WBGene00003722; WP:CE33297 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, wt herm vs wt herm enriched                             
                                              gen, Wang et al 2003  S7 SAGE genes in the dataset,                                
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

R11G11.14 R11G11.14 P W All gene names: R11G11.14; 5B0; CE28762; WBGene00020016; WP:CE28762 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

R13A5.5 R13A5.5 P W All gene names: ceh-13; R13A5.5; 3I647; CE28767; NM_066254; WBGene00000437; WP:CE28767 WormBase description: a homolog of Hox genes of labial/Hox1 type; affects viability, body shape and anterior patterning during embryogenesis, interacts genetically with hox genes; and is expressed in A, D, E and MS lineages in the early embryo, and in the anterior dorsal hypodermal cells, anterior body wall muscle cells, and in the cells of the prospective ventral nerve cord at the comma stage; and in the ventral nerve cord and and ventral and dorsal hypodermal cells in L1 larvae.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S6 removed genes of                                      
                                              contamination, Wang et al 2003  S7 SAGE genes in the                               
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

R13D11.3 R13D11.3 P W All gene names: R13D11.3; 5B293; CE28769; WBGene00020057; WP:CE28769
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

R13H4.5 R13H4.5 P W All gene names: R13H4.5; R13H4.5.1; R13H4.5.2; 5M341; CE12808; WBGene00011263; WP:CE12808 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              A, Reinke et al 2004, list of genes in cluster order,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

R151.5 R151.5 P W All gene names: dpy-31; nas-35; toh-2; R151.5; 3I295; CE27200; CE37139; WBGene00006592; WP:CE27200; WP:CE37139 WormBase description: Zinc metalloprotease
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T01C8.1 T01C8.1 P W All gene names: aak-2; T01C8.1; T01C8.1c.1; T01C8.1c.2; CE07458; CE31222; CE31223; NM_078309; NM_078310; WBGene00020142; WP:CE07458; WP:CE31222; WP:CE31223; XR417 WormBase description: aak-2 encodes one of two C. elegans homologs of the catalytic alpha subunit of AMP-activated protein kinases (AMPKs); in C. elegans, aak-2 functions downstream of stressors and energy level signals, as well as daf-2-mediated insulin signaling, to positively regulate adult lifespan; in addition, genetic analysis with daf-16 mutants indicates that, in regulating lifespan, AAK-2 likely acts in parallel with DAF-16; aak-2 activity is also required for dauer formation of daf-2 mutant animals at high temperature, in a manner that does not appear to be dependent upon the AMP:ATP ratio; in the germline, aak-2 functions downstream of daf-2 and daf-7, and in parallel to par-4 and aak-1, to negatively regulate germline proliferation during dauer development; in vitro, AAK-2 exhibits AMP-enhanced kinase activity against a known AMPK substrate.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T01G5.1 T01G5.1 P W All gene names: T01G5.1; 5P598; CE12974; WBGene00011339; WP:CE12974 WormBase description: tyrosine-protein kinase (KIN15/KIN16 subfamily)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

T04D3.3 T04D3.3 P W All gene names: pde-1; T04D3.3; 1N904; CE16340; NM_060942; WBGene00011433; WP:CE16340 WormBase description: 3',5' cyclic phosphodieterase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 daf-16                                        
                                              Resveratrol, Wang et al 2003  S7 SAGE genes in the                                 
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

T05A12.3 T05A12.3 P W All gene names: T05A12.3; 4H648; CE04898; WBGene00020234; WP:CE04898
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T05B4.12 T05B4.12 P W All gene names: T05B4.12; 5E602; CE13215; WBGene00020243; WP:CE13215
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

T05B4.2 T05B4.2 P W All gene names: nhr-57; T05B4.2; 5E613; CE13195; NM_071752; WBGene00003647; WP:CE13195 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

T05C3.4 T05C3.4 P W All gene names: grl-18; T05C3.4; 5F960; CE39030; WBGene00001727; WP:CE39030
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b signaling, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

T05E7.4 T05E7.4 P W All gene names: T05E7.4; 1G768; CE39031; WBGene00020260; WP:CE39031
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

T06A10.1 T06A10.1 P W All gene names: mel-46; T06A10.1; 4R800; CE28485; NM_070597; WBGene00020284; WP:CE28485
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, wt herm vs wt male enriched                             
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T06C10.1 T06C10.1 P W All gene names: T06C10.1; WBGene00043489
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

T07D4.2 T07D4.2 P W All gene names: T07D4.2; 2J160; CE36406; CE36950; WBGene00011579; WP:CE36406; WP:CE36950
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S4 TransientList, Wang et al 2003  S7 SAGE                             
                                              genes in the dataset, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S8 SAGE genes in the                               
                                              dauer exit, Wang et al 2003  S4 genes pass two-wayANOVA                            
                                              P0                                                                                 

T07F12.1 T07F12.1 P W All gene names: T07F12.1; CE35757; WBGene00020321; WP:CE35757; XF511
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

T07H3.1 T07H3.1 P W All gene names: bath-47; tag-113; T07H3.1; 2B895; CE28653; WBGene00006464; WP:CE28653 WormBase description: bath family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S8 SAGE genes in                              
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

T08E11.4 T08E11.4 P W All gene names: math-41; T08E11.4; CE30168; WBGene00020360; WP:CE30168
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T08G5.1 T08G5.1 P W All gene names: T08G5.1; 5O499; CE18943; WBGene00011622; WP:CE18943
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T09A5.9 T09A5.9 P W All gene names: T09A5.9; T09A5.9.1; T09A5.9.2; T09A5.9.3; 2I149; CE01090; WBGene00011637; WP:CE01090 WormBase description: SDS22 protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

T09E11.8 T09E11.8 P W All gene names: T09E11.8; 1M941; CE13511; WBGene00011657; WP:CE13511
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

T10B11.8 T10B11.8 P W All gene names: T10B11.8; 1H528; CE37405; WBGene00020404; WP:CE37405
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

T10B9.9 T10B9.9 P W All gene names: T10B9.9; 2K66; CE31992; WBGene00011678; WP:CE31992
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

T10H4.11 T10H4.11 P W All gene names: cyp-34A2; T10H4.11; 5P764; CE16396; NM_074387; WBGene00011699; WP:CE16396 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Wang et al 2003  S7 SAGE genes in the                                    
                                              dataset, Wang et al 2003  S3  genes pass one-way ANOVA,                            
                                              Wang et al 2003  S4 Dauer Enriched, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0                                                               

T11B7.5 T11B7.5 P W All gene names: T11B7.5; T11B7.5.1; T11B7.5.2; 4J620; CE03651; WBGene00011708; WP:CE03651
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster B,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T14G12.4 T14G12.4 P W All gene names: fkh-2; T14G12.4; T14G12.4b.1; T14G12.4b.2; CE04965; CE29342; NM_076243; NM_076244; WBGene00001434; WP:CE04965; WP:CE29342; XE360 WormBase description: fkh-2 encodes one of 15 forkhead transcriptional regulators encoded by the C. elegans genome, and is homologous to Drosophila sloppy-paired (slp) and the vertebrate Brain Factor 1 (BF-1, OMIM:164874, expression is restricted to the central nervous system); by homology, FKH-2 is predicted to function as a transcription factor that regulates gene expression during development; while loss of fkh-2 activity via RNA-mediated interference (RNAi) results only in mild locomotion defects in L1 larvae, further RNAi experiments indicate that fkh-2 and pes-1, which encodes another C. elegans forkhead transcription factor, are required redundantly for completion of embryonic and larval development; fkh-2 expression, which partially overlaps that of pes-1, is detected in embryos in descendants of the D and AB founder cell lineages.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

T15D6.12 T15D6.12 P W All gene names: T15D6.12; 1M992; CE13702; WBGene00011786; WP:CE13702
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T15H9.3 T15H9.3 P W All gene names: hlh-6; T15H9.3; 2J902; CE01666; NM_063669; WBGene00001952; WP:CE01666 WormBase description: achaete-scute helix-loop-helix domain
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T16A1.4 T16A1.4 P W All gene names: T16A1.4; 2C367; CE13710; WBGene00020535; WP:CE13710
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

T20B12.6 T20B12.6 P W All gene names: mml-1; T20B12.6; 3I460; CE30186; CE32727; MYC; WBGene00003378; WP:CE30186; WP:CE32727; mio
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

T21B10.5 T21B10.5 P W All gene names: T21B10.5; 2J230; CE23994; WBGene00011887; WP:CE23994 WormBase description: transcriptional repressor like
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster F,                             
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset                                                                            

T23B3.6 T23B3.6 P W All gene names: T23B3.6; 1H284; CE30693; WBGene00020714; WP:CE30693
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Lund et al 2002  Fig4 Mount 15, Reinke et al                               
                                              2004, wt herm vs wt herm enriched gen, Reinke et al                                
                                              2004, IVb male soma enriched genes, ViswanathanM et al                             
                                              2005  S2 daf-16 Resveratrol, Wang et al 2003  S7 SAGE                              
                                              genes in the dataset, Wang et al 2003  S8 SAGE genes in                            
                                              the dauer exit                                                                     

T23F4.3 T23F4.3 P W All gene names: T23F4.3; 2B458; CE14088; WBGene00020741; WP:CE14088
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b Unkown, Wang et al                             
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S5                            
                                              genes common to feeding ANOVA, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                 
                                              genes in the dauer exit                                                            

T25D10.3 T25D10.3 P W All gene names: spp-11; T25D10.3; 2G696; CE30192; NM_062890; WBGene00004996; WP:CE30192 WormBase description: 7TM chemoreceptor, spp family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

T26A5.2 T26A5.2 P W All gene names: T26A5.2; 3H559; CE00703; CE32732; WBGene00020819; WP:CE00703; WP:CE32732
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, intrinsic, Reinke et al                                 
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              herm vs wt male enriched gen, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, Wang et al 2003  S7 SAGE genes in                            
                                              the dataset, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit                                                                         

T26C12.2 T26C12.2 P W All gene names: T26C12.2; 4E28; CE18286; WBGene00020832; WP:CE18286
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

T26F2.2 T26F2.2 P W All gene names: T26F2.2; 5O462; CE14203; WBGene00012058; WP:CE14203
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

W01A11.7 W01A11.7 P W All gene names: F46E10.G; W01A11.7; W01A11.7.1; W01A11.7.2; 5G982; CE37796; WBGene00020912; WP:CE37796
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              Romagnolo et al 2002  Fig3b Unkown, Wang et al 2003  S3                            
                                               genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                
                                              genes in the dauer exit, Wang et al 2003  S7 SAGE genes                            
                                              in the dataset, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

W01G7.4 W01G7.4 P W All gene names: W01G7.4; 2O353; CE21230; WBGene00012188; WP:CE21230
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

W03F11.3 W03F11.3 P W All gene names: W03F11.3; 1C802; CE28502; WBGene00021006; WP:CE28502
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset                                

W04G5.6 W04G5.6 P W All gene names: kin-23; W04G5.6; 1M232; CE28099; NM_060569; WBGene00002205; WP:CE28099 WormBase description: kin-23 encodes a predicted protein tyrosine kinase; like KIN-30, KIN-23 contains an unusual K to R substitution in kinase subdomain VII; kin-23 mRNA is expressed strongly during the L1/L2 larval stages, weakly in L3 and L4 stages, and at undetectable levels in adults. WormBase CDS description: tyrosine-protein kinase (KIN15/KIN16 subfamily) (4 domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S6 removed genes of contamination,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

W05H7.5 W05H7.5 P W All gene names: W05H7.5; WBGene00043542
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

W07A12.7 W07A12.7 P W All gene names: tag-323; W07A12.7; 2J453; CE20163; WBGene00012324; WP:CE20163
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Shen et al 2005  T1 hif-1 depend hypoxia, Wang et al                               
                                              2003  S6 removed genes of contamination, Wang et al                                
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

W08A12.4 W08A12.4 P W All gene names: W08A12.4; 5E153; CE14702; WBGene00021081; WP:CE14702
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

W08F4.1 W08F4.1 P W All gene names: W08F4.1; 2A885; CE14712; WBGene00021091; WP:CE14712
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

W09B7.2 W09B7.b P W All gene names: W09B7.2; W09B7.B; 5J305; WBGene00021107
Y102A5C.25 Y102A5C.25 P W All gene names: srz-54; Y102A5C.25; 5R461; CE20397; NM_074895; WBGene00013626; WP:CE20397
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

Y110A7A.3 Y110A7A.3 P W All gene names: lev-7; tmr-3; unc-63; Y110A7A.3; 1F717; CE30706; NM_059132; WBGene00006797; WP:CE30706 WormBase description: unc-63 encodes an alpha subunit of the nicotinic acetylcholine receptor (nAChR) superfamily; UNC-63 is required for normal locomotion, and functions as a subunit of a ligand-gated ion channel that likely mediates fast actions of acetylcholine at neuromuscular junctions and in the nervous system; when coexpressed with UNC-29 and LEV-1, non-alpha nAChR subunits, the resulting multimer can form levamisole-gated channels; UNC-63 is expressed in body wall muscles, vulval muscles, and a large number of neurons; UNC-63 is a member of the UNC-38-like group of nAChR subunits. WormBase CDS description: ion-channel protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y111B2A.11 Y111B2C.m P W All gene names: epc-1; Y111B2A.11; Y111B2C.M; 3N690; CE36670; NM_067241; WBGene00007030; WP:CE36670
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S7 SAGE genes in                               
                                              the dataset                                                                        

Y111B2A.15 Y111B2D.c P W All gene names: TPST-A; Y111B2A.15; Y111B2D.C; 3N742; CE26632; WBGene00013737; WP:CE26632 WormBase description: protein-tyrosine sulphotransferase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

Y116A8C.25 Y116A8C.25 P W All gene names: Y116A8C.25; 4S16; CE23333; WBGene00013802; WP:CE23333
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

Y116A8C.30 Y116A8C.30 P W All gene names: Y116A8C.30; 4S44; CE27453; WBGene00013807; WP:CE27453
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y17G9A.1 Y17G9A.1 P W All gene names: str-173; Y17G9A.1; 4F627; CE35062; NM_068258; WBGene00006217; WP:CE35062 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y19D10B.5 Y19D10B.c P W All gene names: Y19D10B.5; Y19D10B.C; 5C788; CE27596; WBGene00021234; WP:CE27596
Y32B12B.6 Y32B12B.6 P W All gene names: nhr-233; tag-122; Y32B12B.6; 5R50; CE19066; WBGene00006471; WP:CE19066 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b TF, Wang et al 2003                            
                                               S7 SAGE genes in the dataset, Wang et al 2003  S8 SAGE                            
                                              genes in the dauer exit                                                            

Y37D8A.3 Y37D8A.3 P W All gene names: Y37D8A.3; 3N927; CE20208; WBGene00012545; WP:CE20208
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S8 SAGE genes in the                                 
                                              dauer exit, Wang et al 2003  S4 genes pass two-wayANOVA                            
                                              P0                                                                                 

Y37H2B.1 Y37H2B.1 P W All gene names: Y37H2B.1; 5S708; CE19088; WBGene00012572; WP:CE19088
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S8 SAGE                               
                                              genes in the dauer exit, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

Y39G8C.D Y39G8C.d P W All gene names: Y39G8C.D; WBGene00043654
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S7 SAGE genes in the                             
                                              dataset                                                                            

Y39H10A.1 Y39H10A.i P W All gene names: Y39H10A.1; Y39H10A.I; 5E245; CE26072; WBGene00021478; WP:CE26072
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, mixed oogenesis soma,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y42A5A.2 Y42A5A.2 P W All gene names: Y42A5A.2; 5L568; CE20256; WBGene00012777; WP:CE20256
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

Y45F10D.10 Y45F10D.10 P W All gene names: Y45F10D.10; 4O550; CE16648; WBGene00012889; WP:CE16648
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y46G5A.25 Y46G5A.25 P W All gene names: snf-4; Y46G5A.25; 2N124; CE36672; NM_064329; WBGene00004903; WP:CE36672
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, herm sperm, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              spermatogenesis enriched genes, Reinke et al 2004, fem3                            
                                              enriched genes, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

Y47H9C.2 Y47H9C.2 P W All gene names: Y47H9C.2; 1M439; CE20263; WBGene00012948; WP:CE20263
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

Y48A6A.1 Y48A6A.1 P W All gene names: zig-5; Y48A6A.1; 3M40; CE31735; NM_067004; WBGene00006982; WP:CE31735 WormBase description: zig-5 encodes a predicted membrane-associated protein containing two C2-type immunoglobulin domains and a GPI (glycosylated phosphatidylinositol) anchor site, but no transmembrane domain; ZIG-5 is predicted to function in cell adhesion and/or signaling, and appears to be required for embryogenesis as well as maintenance of ventral nerve cord organization during larval stages; ZIG-5 is expressed in several different neurons and is detected in the PVT guidepost neuron beginning at the three-fold stage of embryogenesis and continuing throughout larval development.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

Y48C3A.15 Y48C3A.15 P W All gene names: Y48C3A.15; WBGene00043678
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y48E1B.5 Y48E1B.5 P W All gene names: Y48E1B.5; 2N858; CE35196; WBGene00013004; WP:CE35196
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

Y51A2A.7 Y51A2A.7 P W All gene names: Y51A2A.7; 5S786; CE20278; WBGene00013063; WP:CE20278 WormBase description: Lectin C-type domain
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S8 SAGE                               
                                              genes in the dauer exit, Wang et al 2003  S4 genes pass                            
                                              two-wayANOVA P0                                                                    

Y51A2D.16 Y51A2D.16 P W All gene names: Y51A2D.16; WBGene00043688
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

Y53G8AL.1 Y53G8AL.c P W All gene names: Y53G8AL.1; Y53G8AL.C; 3E327; CE32534; WBGene00021799; WP:CE32534
Y54G2A.16 Y54G2A.v P W All gene names: Y54G2A.16; Y54G2A.V; Y94H6A_151.A; 4D620; CE34412; WBGene00021881; WP:CE34412
Y54G2A.29 Y54G2A.b P W All gene names: Y54G2A.29; Y54G2A.B; Y94H6A_136.B; 4D788; CE34416; WBGene00021893; WP:CE34416
Y57A10A.27 Y57A10A.27 P W All gene names: Y57A10A.27; 2M560; CE25507; WBGene00013267; WP:CE25507
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

Y57E12B.3 Y57E12B.b P W All gene names: Y57E12B.3; Y57E12B.B; 5H412; CE26551; WBGene00021963; WP:CE26551
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Romagnolo et al 2002  Fig3b Metabolism, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 LateList, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

Y57G11C.32 Y57G11C.32 P W All gene names: Y57G11C.32; 4P408; CE39866; WBGene00013322; WP:CE39866
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

Y60C6A.1 Y60C6A.1 P W All gene names: Y60C6A.1; Y60C6A.A; 5F261; CE22671; WBGene00022013; WP:CE22671
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, IVb male soma enriched                                  
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

Y68A4A.1 Y68A4A.1 P W All gene names: srh-202; Y68A4A.1; 5R660; NM_074951; WBGene00005413
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

Y69H2.10 Y69H2.10 P W All gene names: Y69H2.10; Y69H2.H; 5T163; CE37447; CE37448; WBGene00013485; WP:CE37447; WP:CE37448
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

Y70C5C.1 Y70C5C.1 P W All gene names: Y70C5C.1; 5R181; CE37861; WBGene00013492; WP:CE37861
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S8 SAGE genes in                              
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

Y71H2AR.2 Y71H2AR.a P W All gene names: Y71H2AR.2; Y71H2AR.A; 3D928; CE22930; WBGene00022189; WP:CE22930
Y73C8C.4 Y73C8C.4 P W All gene names: Y73C8C.4; 5D576; CE36052; WBGene00022263; WP:CE36052
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

Y73F4A.2 Y73F4A.2 P W All gene names: Y73F4A.2; 4J806; CE20368; WBGene00013515; WP:CE20368
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

Y73F8A.3 Y73F8A.3 P W All gene names: srj-42; Y73F8A.3; 4Q14; CE39876; NM_070439; WBGene00005625; WP:CE39876 WormBase description: 7tm receptor protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S8 SAGE genes in the dauer                                
                                              exit                                                                               

Y75B12B.4 Y75B12B.4 P W All gene names: bath-36; Y75B12B.4; 5P667; CE20373; WBGene00013569; WP:CE20373 WormBase description: BTB (also known as BR-C/Ttk) domain.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, GO                              
                                              categories, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

Y75D11A.2 Y75D11A.2 P W All gene names: Y75D11A.2; Y75D11A.D; CE23051; WBGene00022291; WP:CE23051; XC361
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, list of                             
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit                                                                               

ZC190.1 ZC190.1 P W All gene names: cln-3.3; ZC190.1; 5J165; CE27645; NM_072836; WBGene00000541; WP:CE27645 WormBase description: cln-3.1 encodes a predicted transmembrane protein that comprises one of three C. elegans homologs of human CLN3, (OMIM:607042, mutations are associated with Batten disease (also known as juvenile neuronal ceroid lipofuscinosis), a recessively inherited childhood neurodegenerative lysosomal storage disease); as loss of cln-3.3 via large-scale RNAi screens results in no obvious abnormalities, the precise role of cln-3.3 in C. elegans development and/or behavior is not yet known. WormBase CDS description: intergral membrane protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

ZC190.5 ZC190.5 P W All gene names: ZC190.5; 5J150; CE18428; WBGene00022539; WP:CE18428
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, herm soma enriched genes,                                  
                                              Reinke et al 2004, list of genes in cluster B, Wang et                             
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S8 SAGE genes in                              
                                              the dauer exit, Wang et al 2003  S7 SAGE genes in the                              
                                              dataset, Wang et al 2003  S4 genes pass two-wayANOVA P0                            

ZC196.4 ZC196.4 P W All gene names: ZC196.4; 5J211; CE36348; WBGene00022548; WP:CE36348
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Dauer specific genes                                
                                              P<0.05, Reinke et al 2004, herm soma enriched genes,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

ZC334.3 ZC334.3 P W All gene names: ins-24; ZC334.3; 1O622; CE36062; NM_061042; WBGene00002107; WP:CE36062 WormBase description: ins-24 encodes an insulin-like peptide of the insulin superfamily of proteins (OMIM:176730, 147440); INS-24 is one of 38 insulin-like peptides in C. elegans, but as loss of INS-24 function via RNA-mediated interference does not result in any abnormalities, the precise role of INS-24 in C. elegans development is not yet clear.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

ZC487.2 ZC487.2 P W All gene names: ZC487.2; 5H198; CE07604; WBGene00022624; WP:CE07604
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

ZC504.3 ZC504.3 P W All gene names: ZC504.3; CE03811; WBGene00013917; WP:CE03811; XL36 WormBase description: serine/threonine kinase (CDC2/CDKX subfamily)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, fem1 enriched genes, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, mixed oogenesis soma, Reinke et al 2004, wt                               
                                              herm vs wt male enriched gen, Reinke et al 2004, GO                                
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit, Wang et al                               
                                              2003  S7 SAGE genes in the dataset                                                 

ZC64.3 ZC64.3 P W All gene names: ceh-18; ZC64.3; CE25674; CE31263; CE33743; NM_171659; WBGene00000441; WP:CE25674; WP:CE31263; WP:CE33743; XE462 WormBase description: ceh-18 encodes a POU-class homeodomain transcription factor; CEH-18 is required in hermaphrodites for specific aspects of gonadal sheath cell differentiation, such as normal cell shape and position, that are essential for negative regulation of oocyte meiotic maturation by the sheath cells; in this process, CEH-18 functions in parallel with the VAB-1/Ephrin receptor as part of a sperm-sensing checkpoint mechanism that prevents oocyte maturation, MAPK activation, and ovulation in the absence of sperm; CEH-18 is expressed in the sheath cell nuclei beginning at the L4 larval stage
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S4 Early genes, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S8 SAGE genes in the                               
                                              dauer exit, Wang et al 2003  S4 genes pass two-wayANOVA                            
                                              P0                                                                                 

ZC84.3 ZC84.3 P W All gene names: ZC84.3; 3K276; CE15022; WBGene00013847; WP:CE15022
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

ZK1321.2 ZK1321.2 P W All gene names: ZK1321.2; ZK1321.2d.1; ZK1321.2d.2; 2K57; CE32769; CE32770; CE32771; CE32772; CE36966; NSHAK1; WBGene00014261; WP:CE32769; WP:CE32770; WP:CE32771; WP:CE32772; WP:CE36966 WormBase description: ZK1321.2 encodes at least four isoforms of a SHAKER/Kv1 ortholog, which encodes voltage-dependent potassium channels expressed in muscle.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order, Wang                            
                                              et al 2003  S7 SAGE genes in the dataset, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit                                              

ZK180.3 ZK180.3 P W All gene names: ZK180.3; ZK180.3b.1; ZK180.3b.2; ZK180.3b.3; 4F274; CE07621; CE33959; WBGene00022677; WP:CE07621; WP:CE33959
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig5 conserved w/ yeast,                            
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

ZK384.2 ZK384.2 P W All gene names: ZK384.2; 5T208; CE16723; WBGene00013972; WP:CE16723 WormBase description: SCP-like extracellular Proteins (2 domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Murphy et al 2003  Fig2 Class1 elongate                                    
                                              lifespan, Wang et al 2003  S7 SAGE genes in the                                    
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

ZK6.8 ZK6.8 P W All gene names: ZK6.8; 5A859; CE18445; WBGene00022643; WP:CE18445
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

ZK858.5 ZK858.5 P W All gene names: ZK858.5; 1J712; CE34235; WBGene00014118; WP:CE34235
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, list of                             
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S8 SAGE genes in the dauer                             
                                              exit, Wang et al 2003  S7 SAGE genes in the dataset