Jones et al 2001 T3 20 most abundant Dauer, 19 genes Gene list file name: Jones2001.T3_20mostDauer.txt Type of gene identifier: MA primer pair (sjj) Description: Jones et al 2001 Table 3: The Twenty Most Abundant Dauer SAGE Tags Organism: Caenorhabditis elegans (nematode) Gene list type: Experimental Gene name Source Gene ID All gene names WormBase description WormBase CDS description Proteome description Member of lists (Publications) Other annotations C18A11.2 C18A11.2 C18A11.2; CE04033; WBGene00015948; WP:CE04033; XI685 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, ViswanathanM et al 2005 S2 daf-16 Resveratrol, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S8 SAGE genes in the dauer exit F14D7.5 F14D7.5 F14D7.5; 5O780; CE09383; WBGene00008792; WP:CE09383 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 F17C11.4 F17C11.4 F17C11.4; 5L433; CE05651; WBGene00008915; WP:CE05651 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Lund et al 2002 Fig4 Mount 15, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S8 SAGE genes in the dauer exit F20A1.6 F20A1.6 F20A1.6; 5H506; CE29766; CE37002; WBGene00017618; WP:CE29766; WP:CE37002 Jones et al 2001 T3 20 most abundant Dauer, Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S8 SAGE genes in the dauer exit F36D3.9 F36D3.9 cpr-2; F36D3.9; 5R14; CE30347; CPROT/2; NM_074785; WBGene00000782; WP:CE30347 cysteine protease Bishop et al 2004 T4 57 vhl-1 depend hif-1 indep, Golden et al 2004, N2 vs daf-2 different genes at , Golden et al 2004, N2 vs daf-2 age different gene, Golden et al 2004, N2 differentially expressed gen, Jones et al 2001 T3 20 most abundant Dauer, Lund et al 2002 Fig1 aging-regulated genes, Murphy et al 2003 Fig2 Class1 elongate lifespan, ViswanathanM et al 2005 S2 daf-16 Resveratrol, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S8 SAGE genes in the dauer exit F38E11.2 F38E11.2 hsp-12.6; hsp-20; F38E11.2; 4K210; CE03294; NM_069267; WBGene00002013; WBGene00002022; WP:CE03294 alpha-B-crystallin Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Kwon et al 2004 T1 transient-induction Ethanol-res, Murphy et al 2003 Fig2 Class1 elongate lifespan, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched F39H2.5 F39H2.1 F39H2.5; F39H2.5.1; F39H2.5.2; 1J239; CE30531; WBGene00009564; WP:CE30531 Jones et al 2001 T3 20 most abundant Dauer, Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, herm soma enriched genes K09H9.5 K09H9.5 K09H9.5; 1D708; CE33146; CE36703; WBGene00019597; WP:CE33146; WP:CE36703 Jones et al 2001 T3 20 most abundant Dauer, Romagnolo et al 2002 Fig3b Unkown, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S8 SAGE genes in the dauer exit R02C2.3 R02C2.3 tag-40; R02C2.3; 5A726; CE35355; WBGene00006419; WP:CE35355 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 R02E12.6 R02E12.6 R02E12.6; R02E12.6.1; R02E12.6.2; CE30099; WBGene00019830; WP:CE30099; XE628 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S8 SAGE genes in the dauer exit R05A10.1 K01G12.2 R05A10.1; 4O953; CE36884; WBGene00011018; WP:CE36884 Jones et al 2001 T3 20 most abundant Dauer, Reinke et al 2004, wt herm vs wt male enriched gen, Reinke et al 2004, herm soma enriched genes T05B4.12 T05B4.12 T05B4.12; 5E602; CE13215; WBGene00020243; WP:CE13215 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Reinke et al 2004, list of genes in cluster order, Reinke et al 2004, list of genes in cluster C, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched T09F5.8 T09F5.8 srh-278; T09F5.8; 5P651; CE13535; NM_074342; WBGene00005483; WP:CE13535 Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S8 SAGE genes in the dauer exit T16A1.4 T16A1.4 T16A1.4; 2C367; CE13710; WBGene00020535; WP:CE13710 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, ViswanathanM et al 2005 S2 sir-2.1 regulated, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched T21D12.11 T21D12.11 T21D12.11; 4B23; CE18274; WBGene00020650; WP:CE18274 Jones et al 2001 T3 20 most abundant Dauer T25D10.3 T25D10.3 spp-11; T25D10.3; 2G696; CE30192; NM_062890; WBGene00004996; WP:CE30192 7TM chemoreceptor, spp family Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S4 Dauer Enriched, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S4 genes pass two-wayANOVA P0 T26C11.2 T26C11.2 T26C11.2; CE05021; WBGene00020828; WP:CE05021; XC449 E. gracilis major membrane skeletal protein Jones et al 2001 T3 20 most abundant Dauer W01A11.7 W01A11.7 F46E10.G; W01A11.7; W01A11.7.1; W01A11.7.2; 5G982; CE37796; WBGene00020912; WP:CE37796 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Reinke et al 2004, IVb male soma enriched genes, Romagnolo et al 2002 Fig3b Unkown, Wang et al 2003 S3 genes pass one-way ANOVA, Wang et al 2003 S8 SAGE genes in the dauer exit, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S4 genes pass two-wayANOVA P0, Wang et al 2003 S4 Dauer Enriched W07A12.7 W07A12.7 tag-323; W07A12.7; 2J453; CE20163; WBGene00012324; WP:CE20163 Jones et al 2001 Dauer specific genes P<0.05, Jones et al 2001 T3 20 most abundant Dauer, Shen et al 2005 T1 hif-1 depend hypoxia, Wang et al 2003 S6 removed genes of contamination, Wang et al 2003 S7 SAGE genes in the dataset, Wang et al 2003 S8 SAGE genes in the dauer exit