Jones et al 2001 T3 20 most abundant Dauer, 19 genes

Gene list file name:Jones2001.T3_20mostDauer.txt
Type of gene identifier:MA primer pair (sjj)
Description:Jones et al 2001 Table 3: The Twenty Most Abundant Dauer SAGE Tags  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C18A11.2 C18A11.2 P W All gene names: C18A11.2; CE04033; WBGene00015948; WP:CE04033; XI685
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

F14D7.5 F14D7.5 P W All gene names: F14D7.5; 5O780; CE09383; WBGene00008792; WP:CE09383
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

F17C11.4 F17C11.4 P W All gene names: F17C11.4; 5L433; CE05651; WBGene00008915; WP:CE05651
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Lund et al 2002  Fig4 Mount 15, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S7 SAGE genes                              
                                              in the dataset, Wang et al 2003  S8 SAGE genes in the                              
                                              dauer exit                                                                         

F20A1.6 F20A1.6 P W All gene names: F20A1.6; 5H506; CE29766; CE37002; WBGene00017618; WP:CE29766; WP:CE37002
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T3 20 most abundant                             
                                              Dauer, Romagnolo et al 2002  Fig3b Unkown, Wang et al                              
                                              2003  S8 SAGE genes in the dauer exit                                              

F36D3.9 F36D3.9 P W All gene names: cpr-2; F36D3.9; 5R14; CE30347; CPROT/2; NM_074785; WBGene00000782; WP:CE30347 WormBase description: cysteine protease
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Golden et al 2004, N2 vs daf-2 different                              
                                              genes at , Golden et al 2004, N2 vs daf-2 age different                            
                                              gene, Golden et al 2004, N2 differentially expressed                               
                                              gen, Jones et al 2001  T3 20 most abundant Dauer, Lund                             
                                              et al 2002  Fig1 aging-regulated genes, Murphy et al                               
                                              2003  Fig2 Class1 elongate lifespan, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                            
                                              the dauer exit                                                                     

F38E11.2 F38E11.2 P W All gene names: hsp-12.6; hsp-20; F38E11.2; 4K210; CE03294; NM_069267; WBGene00002013; WBGene00002022; WP:CE03294 WormBase description: alpha-B-crystallin
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Kwon et al 2004 T1 transient-induction Ethanol-res,                                
                                              Murphy et al 2003  Fig2 Class1 elongate lifespan, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S8 SAGE genes in the dauer exit, Wang et al 2003                             
                                              S7 SAGE genes in the dataset, Wang et al 2003  S4 genes                            
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

F39H2.5 F39H2.1 P W All gene names: F39H2.5; F39H2.5.1; F39H2.5.2; 1J239; CE30531; WBGene00009564; WP:CE30531
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T3 20 most abundant                             
                                              Dauer, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, herm soma                              
                                              enriched genes                                                                     

K09H9.5 K09H9.5 P W All gene names: K09H9.5; 1D708; CE33146; CE36703; WBGene00019597; WP:CE33146; WP:CE36703
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T3 20 most abundant                             
                                              Dauer, Romagnolo et al 2002  Fig3b Unkown, ViswanathanM                            
                                              et al 2005  S2 sir-2.1 regulated, Wang et al 2003  S8                              
                                              SAGE genes in the dauer exit                                                       

R02C2.3 R02C2.3 P W All gene names: tag-40; R02C2.3; 5A726; CE35355; WBGene00006419; WP:CE35355
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

R02E12.6 R02E12.6 P W All gene names: R02E12.6; R02E12.6.1; R02E12.6.2; CE30099; WBGene00019830; WP:CE30099; XE628
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

R05A10.1 K01G12.2 P W All gene names: R05A10.1; 4O953; CE36884; WBGene00011018; WP:CE36884
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T3 20 most abundant                             
                                              Dauer, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, herm soma enriched genes                                   

T05B4.12 T05B4.12 P W All gene names: T05B4.12; 5E602; CE13215; WBGene00020243; WP:CE13215
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

T09F5.8 T09F5.8 P W All gene names: srh-278; T09F5.8; 5P651; CE13535; NM_074342; WBGene00005483; WP:CE13535
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T3 20 most abundant                             
                                              Dauer, Wang et al 2003  S8 SAGE genes in the dauer exit                            

T16A1.4 T16A1.4 P W All gene names: T16A1.4; 2C367; CE13710; WBGene00020535; WP:CE13710
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S7                               
                                              SAGE genes in the dataset, Wang et al 2003  S4 genes                               
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

T21D12.11 T21D12.11 P W All gene names: T21D12.11; 4B23; CE18274; WBGene00020650; WP:CE18274
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T3 20 most abundant                             
                                              Dauer                                                                              

T25D10.3 T25D10.3 P W All gene names: spp-11; T25D10.3; 2G696; CE30192; NM_062890; WBGene00004996; WP:CE30192 WormBase description: 7TM chemoreceptor, spp family
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S8 SAGE genes in                               
                                              the dauer exit, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

T26C11.2 T26C11.2 P W All gene names: T26C11.2; CE05021; WBGene00020828; WP:CE05021; XC449 WormBase description: E. gracilis major membrane skeletal protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T3 20 most abundant                             
                                              Dauer                                                                              

W01A11.7 W01A11.7 P W All gene names: F46E10.G; W01A11.7; W01A11.7.1; W01A11.7.2; 5G982; CE37796; WBGene00020912; WP:CE37796
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              Romagnolo et al 2002  Fig3b Unkown, Wang et al 2003  S3                            
                                               genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                
                                              genes in the dauer exit, Wang et al 2003  S7 SAGE genes                            
                                              in the dataset, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

W07A12.7 W07A12.7 P W All gene names: tag-323; W07A12.7; 2J453; CE20163; WBGene00012324; WP:CE20163
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Shen et al 2005  T1 hif-1 depend hypoxia, Wang et al                               
                                              2003  S6 removed genes of contamination, Wang et al                                
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit