Romagnolo et al 2002 Fig3b Proteases, 19 genes

Gene list file name:Romagnolo2002.Fig3b_20Proteases.txt
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig3b 20 Proteases  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C10G8.3 C10G8.3 P W All gene names: C10G8.3; 5F791; CE20494; WBGene00015682; WP:CE20494
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C17G1.6 C17G1.6 P W All gene names: nas-37; C17G1.6; C17G1.6b.1; C17G1.6b.2; CE31417; CE38034; WBGene00003553; WP:CE31417; WP:CE38034; XK564 WormBase description: nas-37 encodes an extracellular matrix metalloprotease of the M12A (astacin) family that, in addition to its catalytic domain, contains an N-terminal secretion signal and EGF-like, CUB, and thrombospondin-1 domains in the C-terminal regulatory, or predicted protein-protein interaction, region; NAS-37 activity is required for efficient or full completion of the four larval molts in which older cuticle is shed and replaced by the newer, stage-specific cuticle; NAS-37 is able to induce the formation of an anterior contractile ring in cuticle from a parasitic nematode, suggesting that anterior cuticle digestion may be a conserved process in nematode ecdysis; in addition, NAS-37 may also play a minor role in normal cuticular collagen synthesis and/or processing; a NAS-37 translational reporter is expressed in the anterior hypodermis Hyp5, the excretory duct cell, and in pharyngeal, rectal, amphid, and vulval tissues; expression in Hyp5 can be see up to four hours prior to ecdysis; nas-37 promoter fusions additionally reveal expression in all hypodermal cells, although the functional significance of this more widespread expression is not yet known.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, Romagnolo et al 2002  Fig3b Proteases,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

C34D4.9 C34D4.9 P W All gene names: nas-8; C34D4.9; 4H881; CE31327; NM_068713; WBGene00003527; WP:CE31327
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C34H3.1 C34H3.B P W All gene names: tag-275; C34H3.1; CE35421; WBGene00016423; WP:CE35421; XG762
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              Romagnolo et al 2002  Fig3b Unkown, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, Wang et al 2003  S4 TransientList,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

C46C2.4 C46C2.4 P W All gene names: C46C2.4; 4J955; CE03083; WBGene00008112; WP:CE03083 WormBase description: alpha/beta hydrolase fold
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases                             

C52D10.8 C52D10.8 P W All gene names: skr-13; C52D10.8; 4S106; CE17592; NM_070641; WBGene00004819; WP:CE17592 WormBase description: The skr-13 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-13(RNAi) animals are at least superficially normal. WormBase CDS description: cyclin A-associated protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, Lund et al 2002  Fig3D Oocyte-en,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              Romagnolo et al 2002  Fig3b Proteases, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F18A12.5 F18A12.5, T06D4.5 P W All gene names: F18A12.5; 2D686; CE35493; WBGene00017554; WP:CE35493 WormBase description: F18A12.5 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F18A12.5 has no clear orthologs in other organisms. WormBase CDS description: peptidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, spermatogenesis enriched genes, Reinke et al                              
                                              2004, fem3 enriched genes, Reinke et al 2004, wt vs                                
                                              glp-4 enriched genes, Reinke et al 2004, list of genes                             
                                              in cluster D, Reinke et al 2004, GO categories,                                    
                                              Romagnolo et al 2002  Fig3b Proteases, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F21F8.6 F21F8.6 P W All gene names: F21F8.6; 5I746; CE35285; WBGene00017680; WP:CE35285 WormBase description: protease
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases                             

F23B2.12 F23B2.12 P W All gene names: pcp-2; F23B2.12; F23B2.12.1; F23B2.12.2; 4J926; CE09592; NM_069198; WBGene00003957; WP:CE09592 WormBase description: lysosomal carboxypeptidase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              herm soma enriched genes, Romagnolo et al 2002  Fig3b                              
                                              Proteases, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 Early genes, Wang et al 2003                            
                                               S4 genes pass two-wayANOVA P0                                                     

F29G6.1 F29G6.1 P W All gene names: F29G6.1; CE34177; WBGene00009257; WP:CE34177; XM127 WormBase description: kazal-type proteinase inhibitor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Proteases,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F44E7.4 F44E7.4 P W All gene names: F44E7.4; F44E7.4c.1; F44E7.4c.2; 5G254; CE10402; CE30799; CE33092; CE37110; WBGene00018426; WP:CE10402; WP:CE30799; WP:CE33092; WP:CE37110 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Proteases,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F45E4.7 F45E4.7 P W All gene names: F45E4.7; 4I400; CE33648; CE37644; CE37645; WBGene00018472; WP:CE33648; WP:CE37644; WP:CE37645
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

F53B6.5 F53B6.5 P W All gene names: F53B6.5; 1J525; CE34486; WBGene00009960; WP:CE34486 WormBase description: initiation factor associated protein
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F58A6.4 F58A6.4 P W All gene names: nas-29; F58A6.4; 2F424; CE39943; NM_062552; WBGene00003547; WP:CE39943
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Proteases, Wang                             
                                              et al 2003  S3  genes pass one-way ANOVA, Wang et al                               
                                              2003  S4 LateList, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

K03B8.1 K03B8.1 P W All gene names: nas-16; K03B8.1; 5L871; CE06075; NM_073488; WBGene00003535; WP:CE06075 WormBase description: zinc metalloprotease
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K10B2.2 K10B2.2 P W All gene names: K10B2.2; 2G659; CE02009; CE33418; WBGene00019605; WP:CE02009; WP:CE33418 WormBase description: Carboxypeptidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, GO categories, Reinke et                             
                                              al 2004, herm soma enriched genes, Romagnolo et al 2002                            
                                               Fig3b Proteases                                                                   

T02B11.7 T02B11.7 P W All gene names: nas-32; T02B11.7; 5B374; CE36189; NM_070950; WBGene00003550; WP:CE36189 WormBase description: protease
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases                             

ZK688.6 ZK688.6 P W All gene names: tag-282; ZK688.6; ZK688.6a.1; ZK688.6a.2; 3I996; CE00464; CE29648; WBGene00022801; WP:CE00464; WP:CE29648
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Proteases, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

ZK945.2 ZK945.2 P W All gene names: pas-7; ZK945.2; ZK945.2.1; ZK945.2.2; 2K388; CE36420; NM_063776; WBGene00003928; WP:CE36420 WormBase description: proteasome component (A-type)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Proteases,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA