Romagnolo et al 2002 Fig3b Protein Synthesis, 19 genes

Gene list file name:Romagnolo2002.Fig3b_19ProteinSynthesis.txt
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig3b 19 Protein Synthesis  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C04F12.4 C04F12.4 P W All gene names: rpl-14; C04F12.4; C04F12.4.1; C04F12.4.2; 1K265; CE19677; NM_060175; WBGene00004426; WP:CE19677 WormBase description: rpl-14 encodes a large ribosomal subunit L14 protein.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig3b Protein Synthesis,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C06B8.8 C06B8.8 P W All gene names: rpl-38; C06B8.8; C06B8.8.1; C06B8.8.2; 5P991; CE20485; NM_074459; WBGene00004452; WP:CE20485 WormBase description: rpl-38 encodes a large ribosomal subunit L38 protein.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Romagnolo et al 2002  Fig3b Protein Synthesis                                      

C09H10.2 C09H10.2 P W All gene names: rpl-41; C09H10.2; C09H10.2.1; C09H10.2.2; C09H10.2.3; 2L388; CE02131; NM_063974; WBGene00004454; WP:CE02131 WormBase description: rpl-41 encodes a large ribosomal subunit L41 protein; by homology, RPL-41 is predicted to function in protein biosynthesis. WormBase CDS description: 60S ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Romagnolo et al 2002  Fig3b Protein Synthesis                                      

C25A1.3 C25A1.3 P W All gene names: tag-72; C25A1.3; 1K736; CE36918; WBGene00006447; WP:CE36918 WormBase description: Yeast ABD1 protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, Fig2b shared gemlines,                                 
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, GO categories,                             
                                              Romagnolo et al 2002  Fig3b Protein Synthesis,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C48E7.2 C48E7.2 P W All gene names: C48E7.2; 1G833; CE08817; WBGene00016750; WP:CE08817
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Romagnolo et al 2002  Fig3b                                  
                                              Protein Synthesis                                                                  

D1007.12 D1007.12 P W All gene names: rpl-24.1; RPL-24; D1007.12; D1007.12.1; D1007.12.2; 1F153; CE09047; NM_058998; WBGene00004436; WP:CE09047 WormBase description: rpl-24.1 encodes a large ribosomal subunit L24 protein. WormBase CDS description: 60S ribosomal protein L24
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F10C2.6 F10C2.6 P W All gene names: drs-2; F10C2.6; 5M531; CE31906; NM_073618; WBGene00001095; WP:CE31906 WormBase description: drs-2 encodes a putative aspartyl-tRNA synthetase. WormBase CDS description: aspartyl-tRNA synthetase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Romagnolo et al 2002                                 
                                              Fig3b Protein Synthesis, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

F10E7.7 F10E7.7 P W All gene names: rpl-33; F10E7.7; F10E7.7.1; F10E7.7.2; 2H397; CE04362; NM_063067; WBGene00004447; WP:CE04362 WormBase description: rpl-33 encodes a large ribosomal subunit L35a protein. WormBase CDS description: 60s ribosomal protein L35A
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F29C12.4 F29C12.4 P W All gene names: F29C12.4; 2N411; CE19822; WBGene00009246; WP:CE19822 WormBase description: Elongation factor Tu family (contains ATP/GTP binding P-loop), Elongation factor G C-terminus
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F52B5.6 F52B5.6 P W All gene names: rpl-25.2; F52B5.6; F52B5.6.1; F52B5.6.2; 1I906; CE05721; NM_059862; WBGene00004439; WP:CE05721 WormBase description: rpl-25.2 encodes a large ribosomal subunit L23a protein. WormBase CDS description: 60S ribosomal protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, Fig2b shared gemlines, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, intrinsic, Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Romagnolo et al 2002  Fig3b Protein                                
                                              Synthesis, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F54A3.3 F54A3_31.E P W All gene names: F54A3.3; 2C531; CE31540; WBGene00018782; WP:CE31540
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F57B9.6 F57B9.6 P W All gene names: inf-1; F57B9.6; F57B9.6a.1; F57B9.6a.2; 3I21; CE01341; CE38524; Ce1F; CeIF; NM_066108; WBGene00002083; WP:CE01341; WP:CE38524 WormBase description: inf-1 encodes a protein with high similarity to eukaryotic initiation factor 4A.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

K02E7.3 K02E7.3 P W All gene names: K02E7.3; 2B367; CE11626; WBGene00019308; WP:CE11626
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Romagnolo et al 2002                            
                                              Fig5 genes in let-60 timecour, Romagnolo et al 2002                                
                                              Fig3b Protein Synthesis, ViswanathanM et al 2005  S2                               
                                              daf-16 Resveratrol                                                                 

W03G1.4 W03G1.4 P W All gene names: W03G1.4; CE17282; WBGene00043538; WP:CE17282
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Romagnolo                             
                                              et al 2002  Fig3b Protein Synthesis, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol                                                        

Y37D8A.18 Y37D8A.18 P W All gene names: Y37D8A.18; 3O17; CE20222; WBGene00012556; WP:CE20222
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Protein Synthesis, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated                                                                          

Y92H12BR.8 F37F2.1 P W All gene names: Y92H12BR.8; 1B913; CE26840; WBGene00022373; WP:CE26840
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Protein Synthesis, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

ZC434.2 ZC434.2 P W All gene names: rps-7; ZC434.2; ZC434.2.1; ZC434.2.2; 1K907; CE06577; NM_060307; WBGene00004476; WP:CE06577 WormBase description: rps-7 encodes a small ribosomal subunit S7 protein. WormBase CDS description: 40S ribosomal protein S7
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK1098.4 ZK1098.4 P W All gene names: ZK1098.4; 3K633; CE00367; WBGene00014221; WP:CE00367 WormBase description: GCN3 (yeast transcription activator)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Protein Synthesis,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK856.10 ZK856.10 P W All gene names: ZK856.10; 5K686; CE06667; WBGene00014111; WP:CE06667 WormBase description: DNA directed RNA polymerase III
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, fem1 enriched genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              herm vs wt male enriched gen, Romagnolo et al 2002                                 
                                              Fig3b Protein Synthesis, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated