Portman et al 2004 T1 25 candidate ray genes, 25 genes

Gene list file name:Portman2004.T1_25_candidate_ray-genes.txt
Type of gene identifier:MA primer pair (sjj)
Description:Portman et al 2004 Table1 25 candidate ray genes  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AH6.3 AH6.3 P W All gene names: AH6.3; 2J805; CE01457; WBGene00007081; WP:CE01457
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm                                                                       

B0272.1 B0272.1 P W All gene names: tbb-4; B0272.1; CE00850; NM_077184; WBGene00006538; WP:CE00850; XK54 WormBase description: tubulin beta chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Portman et al 2004  T1 newly found ray-genes                              
                                              in25c, Portman et al 2004  T1 25 candidate ray genes,                              
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C03A7.3 C03A7.3 P W All gene names: srw-140; C03A7.3; 5F641; CE34521; NM_071984; WBGene00005887; WP:CE34521 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

C09B9.3 C09B9.3 P W All gene names: C09B9.3; 4F786; CE29571; WBGene00015628; WP:CE29571
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              Portman et al 2004  T1 25 candidate ray genes, Reinke                              
                                              et al 2004, herm sperm, Reinke et al 2004, wt vs glp-4                             
                                              enriched genes, Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C17H12.9 C17H12.9 P W All gene names: ceh-48; C17H12.9; 4H577; CE16869; WBGene00015934; WP:CE16869 WormBase description: C17H12.9 encodes a ONECUT class CUT homeobox protein with a single N-terminal cut domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; C17H12.9 is strongly affiliated with, and may be orthologous to, Drosophila ONECUT and mammalian HNF6 proteins; C17H12.9 has no obvious function in mass RNAi assays. WormBase CDS description: homeobox protein
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, mixed sperm soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, fem3                                 
                                              enriched genes                                                                     

C25F9.1 C25F9.1 P W All gene names: srw-85; C25F9.1; 5T900; CE31883; NM_075380; WBGene00005832; WP:CE31883 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              A, Reinke et al 2004, list of genes in cluster order                               

C28A5.4 C28A5.4 P W All gene names: ceh-43; C28A5.4; 3F536; CE05325; NM_065503; WBGene00000463; WP:CE05325 WormBase description: A homeobox protein of the Distal-less (Dll) class that is required for development of the anterior hypdermis during embryonic morphogenesis for cell adhesion; also affects embryonic and larval viability; it is predominantly expressed in the head hypdodermis, neuronal support cells and CAN neurons. WormBase CDS description: homeobox protein (distal-less subfamily)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Portman et al 2004  T1 25                                    
                                              candidate ray genes, Reinke et al 2004, fem1 enriched                              
                                              genes, Reinke et al 2004, mixed oogenesis soma                                     

C37H5.10 C37H5.10 P W All gene names: cwp-1; C37H5.10; 5F318; CE08633; NM_071893; WBGene00000859; WP:CE08633 WormBase description: cwp-1 encodes a nematode-specific protein that is coexpressed with lov-1 and pkd-2.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes                                                                              

C37H5.11 C37H5.11 P W All gene names: cwp-2; C37H5.11; 5F320; CE08634; NM_071894; WBGene00000860; WP:CE08634 WormBase description: cwp-2 encodes a nematode-specific protein that is coexpressed with lov-1 and pkd-2.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C37H5.4 C37H5.4 P W All gene names: cwp-3; C37H5.4; 5F321; CE33278; NM_071895; WBGene00000861; WP:CE33278 WormBase description: cwp-3 encodes an unfamiliar protein predicted to be secreted and alleged to be coexpressed with polycystins; CWP-3 is dispensable for viability and gross morphology in mass RNAi screens.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

C50E10.11 C50E10.11 P W All gene names: sre-50; C50E10.11; 2M595; CE38165; NM_064211; WBGene00016834; WP:CE38165 WormBase description: 7TM chemoreceptor, sre family
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F14H3.1 F14H3.1 P W All gene names: srj-10; F14H3.1; 5Q552; CE15826; NM_074645; WBGene00005598; WP:CE15826 WormBase description: 7TM receptor
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F23F12.9 F23F12.9 P W All gene names: F23F12.9; 3H569; CE01256; CE32389; WBGene00017755; WP:CE01256; WP:CE32389
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              A, Reinke et al 2004, list of genes in cluster order                               

F28C6.1 F28C6.1 P W All gene names: F28C6.1; 2I881; CE03272; WBGene00009202; WP:CE03272 WormBase description: transcription factor AP-2 like
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F43G6.6 F43G6.6 P W All gene names: F43G6.6; 2M97; CE20788; WBGene00005013; WP:CE20788
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, male sperm, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, mixed sperm soma, Reinke et al 2004, list of                                 
                                              genes in cluster D, Reinke et al 2004, fem3 enriched                               
                                              genes                                                                              

K11D12.1 K11D12.1 P W All gene names: cwp-4; K11D12.1; 5F533; CE30382; NM_071955; WBGene00000862; WP:CE30382 WormBase description: cwp-4 encodes a protein with some similarity to mucins that is predicted to be secreted, and is alleged to be coexpressed with polycystins; CWP-4 is dispensable for viability and gross morphology in mass RNAi screens.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

K11G9.4 K11G9.4 P W All gene names: egl-46; K11G9.4; 5H160; CE07377; NM_072293; WBGene00001210; WP:CE07377 WormBase description: egl-46 encodes a predicted transcription factor and conserved member of a TFIIA-like zinc finger protein family that affects coordinated locomotion, morphology and process formation of the touch cells, male mating efficiency, HSN cell migration, differentiation, and axonal outgrowth, serotonin production and also affects terminal divisions of the Q neuroblasts; acts to inhibit touch cell fate in FLP cells together with egl-44 and is expressed dynamically in neurons, specifically in touch cells, FLP, and HSN neurons. WormBase CDS description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Portman et al 2004  T1 newly                                 
                                              found ray-genes in25c, Portman et al 2004  T1 25                                   
                                              candidate ray genes, Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

T05G5.2 T05G5.2 P W All gene names: hlh-4; T05G5.2; 3K828; CE00314; NM_066749; WBGene00001951; WP:CE00314 WormBase description: Achaete-scute/HLH
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

T10H4.3 T10H4.3 P W All gene names: srw-22; T10H4.3; 5P749; CE16388; NM_074379; WBGene00005769; WP:CE16388 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T28A11.1 T28A11.1 P W All gene names: str-64; T28A11.1; 5D757; CE14281; NM_071506; WBGene00006127; WP:CE14281 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y49G5A.1 Y49G5A.1 P W All gene names: Y49G5A.1; Y49G5A.A; 5F762; CE22273; WBGene00021731; WP:CE22273 WormBase description: trypsin inhibitor
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

Y53C12C.1 Y53C12C.1 P W All gene names: Y53C12C.1; 2K112; CE14906; WBGene00013147; WP:CE14906 WormBase description: Y53C12C.1 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes; it has no obvious function in mass RNAi assays. WormBase CDS description: 'Paired box' domain, Homeobox domain
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 25 candidate                               
                                              ray genes, Romagnolo et al 2002  Fig3b TF                                          

ZK1251.8 ZK1251.8 P W All gene names: twk-21; twk-9; ZK1251.8; 4K459; CE03855; NM_069323; WBGene00006664; WP:CE03855 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

ZK682.4 ZK682.4 P W All gene names: CEABF-1; hlh-10; ZK682.4; 5J758; CE05102; NM_073000; WBGene00001954; WP:CE05102 WormBase description: helix-loop-helix
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

ZK909.4 ZK909.4 P W All gene names: ces-2; ZK909.4; 1P559; CE15479; NM_061209; WBGene00000469; WP:CE15479 WormBase description: ces-2 encodes a basic region leucine-zipper (bZIP) transcription factor, most similar in sequence and binding specificity to the PAR (proline- and acid-rich) subfamily of bZIP proteins; ces-2 is required to activate programmed cell death in the sister cells of the serotoninergic neurosecretory motor (NSM) neurons, and is transcriptionally inhibited by activated LET-60(G12V). WormBase CDS description: albumin D-binding protein like
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              Romagnolo et al 2002  Fig3b TF