Romagnolo et al 2002 Fig3b Transporters, 26 genes

Gene list file name:Romagnolo2002.Fig3b_26Transporters.txt
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig3b 26 Transporters  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0495.4 B0495.4 P W All gene names: nhx-2; B0495.4; 2H982; CE29549; NM_063213; WBGene00003730; WP:CE29549 WormBase description: nhx-2 encodes a sodium/proton exchanger expressed in the apical membranes of intestinal cells; NHX-2 is required for normally high growth rates, and for propagation or maintenance of the germline, NHX-2 is thought to prevent intracellular acidification by catalysing the electroneutral exchange of extracellular sodium for an intracellular proton. WormBase CDS description: NA(+)/H(+) exchanger
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              Romagnolo et al 2002  Fig3b Transporters, Wang et al                               
                                              2003  S4 Early genes, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C01F6.8 C01F6.8 P W All gene names: icl-1; C01F6.8; 4J860; CE17360; CE30069; ICln; WBGene00002046; WP:CE17360; WP:CE30069 WormBase description: The icl-1 gene encodes, through alternative splicing, two alternative forms (ICL-1A, or 'IClnN1', and ICL-1B, or 'IClnN2'), with distinct electrophysiological properties, of an anion channel homolog. WormBase CDS description: nucleotide-sensitive chloride ion channel
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Reinke et al 2004, fem1 enriched                                 
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Romagnolo et                             
                                              al 2002  Fig3b Transporters, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

C24G7.1 C24G7.1 P W All gene names: C24G7.1; 1E681; CE08351; WBGene00016063; WP:CE08351
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Transporters, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C30H6.6 C30H6.6 P W All gene names: haf-1; C30H6.6; 4S321; CE39331; NM_070697; WBGene00001811; WP:CE39331 WormBase description: haf-1 encodes a predicted transmembrane protein of the ATP-binding cassette (ABC) transporter superfamily; by homology, HAF-1 is proposed to function in ATP-dependent transport of molecules across plasma and intracellular membranes; however, as loss of HAF-1 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of HAF-1 in C. elegans development and/or behavior is not yet known. WormBase CDS description: multidrug resistance protein (p-glycoprotein)
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

C35A5.1 C35A5.1 P W All gene names: aqp-5; C35A5.1; 5K969; CE05359; NM_073290; WBGene00000173; WP:CE05359 WormBase description: tonoplast channel protein
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters                                                                       

C41C4.5 C41C4.5 P W All gene names: unc-105; C41C4.5; C41C4.5.1; C41C4.5.2; 2I411; CE23585; NM_063301; WBGene00006832; WP:CE23585 WormBase description: unc-105 encodes a muscle degenerin, a mechanosensory membrane channel that is a member of the degenerin ion channel superfamily and similar to subunits of the mammalian amiloride-sensitive epithelial sodium channel (ENaC, OMIM:600761); UNC-105 is required for normal growth and for normal contraction and organization of muscle, where it is expressed; UNC-105 interacts with LET-2, an alpha2 chain of type IV collagen that is also expressed by muscle and localized to the basement membrane between muscle and hypodermis. WormBase CDS description: Amiloride-sensitive sodium channel
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Transporters,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

C53B4.1 C53B4.1 P W All gene names: C53B4.1; 4J735; CE03087; WBGene00008271; WP:CE03087 WormBase description: transport protein
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

F10D7.2 F10D7.2 P W All gene names: F10D7.2; F10D7.2.1; F10D7.2.2; CE04352; WBGene00017339; WP:CE04352; XR980 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: calcium alpha subunit; tetracycline resistance
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Transporters,                               
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA                                           

F23F1.6 F23F1.6 P W All gene names: F23F1.6; 2A326; CE09606; WBGene00017747; WP:CE09606 WormBase description: amino acid permease
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2                                    
                                              different genes at , Reinke et al 2004, list of genes                              
                                              in cluster order, Reinke et al 2004, GO categories,                                
                                              Reinke et al 2004, herm soma enriched genes, Romagnolo                             
                                              et al 2002  Fig3b Transporters, ViswanathanM et al 2005                            
                                               S2 daf-16 Resveratrol, ViswanathanM et al 2005  S2                                
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0, Wang et al 2003  S4 Dauer Enriched                                

F23F12.3 F23F12.3 P W All gene names: F23F12.3; 3H597; CE37224; WBGene00017751; WP:CE37224
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, Wang et al 2003  S4 Early genes, Wang et                              
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

F41C3.2 F41C3.2 P W All gene names: F41C3.2; 2F41; CE39500; WBGene00018268; WP:CE39500 WormBase description: Sodium/phosphate transporter protein
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Romagnolo et al 2002  Fig3b Transporters,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F44C8.7 F44C8.7 P W All gene names: F44C8.7; 5C695; CE30797; WBGene00018414; WP:CE30797
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters                                                                       

F53C11.6 F53C11.6 P W All gene names: twk-32; F53C11.6; 5O277; CE10914; NM_074015; WBGene00006684; WP:CE10914 WormBase description: potassium channel protein like
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters                                                                       

F54E7.1 F54E7.1 P W All gene names: F54E7.1; 3G771; CE01312; WBGene00018827; WP:CE01312
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Transporters, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

F58G6.3 F58G6.3 P W All gene names: F58G6.3; 4K417; CE28937; WBGene00010274; WP:CE28937
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b Transporters,                               
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

K04E7.2 K04E7.2 P W All gene names: opt-2; pep-2; K04E7.2; CE25039; NM_076686; WBGene00003877; WP:CE25039; XH79 WormBase description: Oligopeptide transporter
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Murphy et al 2003  Fig2 Class2 shorten                                     
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, herm soma enriched genes, Romagnolo                             
                                              et al 2002  Fig3b Transporters, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S3  genes pass                             
                                              one-way ANOVA, Wang et al 2003  S4 Early genes, Wang et                            
                                              al 2003  S4 genes pass two-wayANOVA P0                                             

R09F10.4 R09F10.4 P W All gene names: inx-5; opu-5; R09F10.4; CE33811; NM_077002; WBGene00002127; WP:CE33811; XI916 WormBase description: inx-5 encodes a predicted member of the innexin family; expressed in the embryonic hypodermis, developing vulva, seam cells, and spermatheca. WormBase CDS description: unc-7-like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Transporters,                               
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

T01B4.1 T01B4.1 P W All gene names: T01B4.1; CE06336; NM_078253; WBGene00006674; WP:CE06336; XQ919 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol                                                                        

T10B10.5 T10B10.5 P W All gene names: T10B10.5; CE28659; WBGene00011682; WP:CE28659; XP814 WormBase description: synaptotagmin like
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters                                                                       

T21E8.2 T21E8.2 P W All gene names: pgp-7; T21E8.2; CE36668; NM_077411; WBGene00004001; WP:CE36668; XL484 WormBase description: pgp-7 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; PGP-7 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-7 activity via RNAi results in no obvious defects, the precise role of PGP-7 in C. elegans development and/or behavior is not yet known; pgp-7 promoter-gfp fusion proteins are expressed in the rays of the adult male tail. WormBase CDS description: p-glycoprotein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Transporters,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

T22E5.2 T22E5.2 P W All gene names: glt-4; T22E5.2; CE38553; NM_076674; WBGene00001622; WP:CE38553; XH23 WormBase description: glt-4 encodes an ortholog of glutamate/aspartate and neutral amino acid transporters. WormBase CDS description: sodium-dependent glutamate/aspartate transporter
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters                                                                       

Y32F6A.2 Y32F6A.2 P W All gene names: snf-10; Y32F6A.2; 5K920; CE35652; NM_073281; WBGene00004909; WP:CE35652 WormBase description: snf-10 encodes a member of the sodium:neurotransmitter symporter family. WormBase CDS description: Sodium:neurotransmitter symporter family (2 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt males vs glp4 male                            
                                              enriched , Reinke et al 2004, spermatogenesis enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster D,                              
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, shared sperm, Romagnolo et al 2002  Fig3b                                    
                                              Transporters                                                                       

Y48A6B.6 Y48A6B.6 P W All gene names: Y48A6B.6; 3M115; CE36457; CE36458; WBGene00012967; WP:CE36457; WP:CE36458 WormBase description: Ion transport proteins
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b                                       
                                              Transporters                                                                       

Y48G8AL.13 Y48G8A_3051.B P W All gene names: Y48G8AL.13; Y48G8AL.13.1; Y48G8AL.13.2; Y48G8AL.13.3; 1B698; CE22187; WBGene00021691; WP:CE22187
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              Romagnolo et al 2002  Fig3b Transporters, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, Wang et al 2003  S3  genes                            
                                              pass one-way ANOVA, Wang et al 2003  S4 Dauer Enriched,                            
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

Y8G1A.2 Y8G1A.2 P W All gene names: inx-13; opu-13; Y8G1A.2; 1E318; CE18356; NM_058811; WBGene00002135; WP:CE18356 WormBase description: inx-13 encodes an innexin, an integral transmembrane channel protein that is a structural component of invertebrate gap junctions; INX-13 is essential for larval development and osmoregulation, and may be a component of the gap junctions that link the excretory and hypodermal cells; INX-13 is expressed embryonically in hypodermis and post-embryonically, in hypodermal seam cells, the excretory cell, and the developing vulva and spermatheca; in hypodermal cells, INX-13 localizes to the plasma membrane at points of contact between adjacent cells. WormBase CDS description: membrane protein; probably a channel protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b Transporters,                               
                                              Wang et al 2003  S4 Climbing, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

ZK484.2 ZK484.2 P W All gene names: haf-9; ZK484.2; 1G661; CE27353; CE33261; NM_059353; NM_182010; WBGene00001819; WP:CE27353; WP:CE33261 WormBase description: haf-9 is orthologous to the human gene ATP-BINDING CASSETTE, SUB-FAMILY B (MDR/TAP), MEMBER 3 (TAP2; OMIM:170261), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Reinke et al 2004, herm soma enriched genes, Romagnolo                             
                                              et al 2002  Fig3b Transporters, Wang et al 2003  S4                                
                                              Early genes, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0