Jiang et al 2001 Fig1 male-enriched TF, 14 genes

Gene list file name:Jiang2001.Fig1_male-enriched_TF.txt
Type of gene identifier:Cosmid name
Description:Jiang et al 2001 Fig1 male-enriched Transcription factors  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C07A12.1 ham-2 P W All gene names: ham-2; C07A12.1; CE07992; CE39669; CE39670; WBGene00001821; WP:CE07992; WP:CE39669; WP:CE39670; XF177 WormBase description: The ham-2 gene encodes a C2H2 zinc finger-containing protein required for proper migration of the hermaphrodite-specific neurons (HSNs) and proper attachment of the pharynx to the nose; HAM-2 is expressed in the nuclei of the HSNs during migration, and acts downstream of EGL-5, a posterior group Hox protein, in HSN specification; HAM-2 acts redundantly with UNC-86 to downregulate UNC-43 expression in the HSNs after migration is complete.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

C25G4.4 C25G4.4 P W All gene names: tag-347; C25G4.4; 4N218; CE05305; WBGene00007732; WP:CE05305 WormBase description: SAND domain
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Reinke et al 2004, spermatogenesis enriched genes,                             
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              males vs glp4 male enriched , Reinke et al 2004, GO                                
                                              categories, Reinke et al 2004, shared sperm,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C44F1.2 C44F1.2 P W All gene names: C44F1.2; 3E859; CE31443; WBGene00008092; WP:CE31443 WormBase description: SAND domain
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Murphy et al 2003  Fig2 Class2 shorten lifespan,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, mixed sperm soma, Reinke et al 2004, list of                                 
                                              genes in cluster D, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F08C6.7 F08C6.7 P W All gene names: unc-98; F08C6.7; CE31900; NM_076883; WBGene00006827; WP:CE31900; XI190 WormBase description: unc-98 encodes a protein with four C2H2 zinc fingers and several possible nuclear localization and export sequences; UNC-98 is required for normal mobility, M-line structures, and dense body (Z-line analog) structures; UNC-98 binds UNC-97/PINCH, HUM-6, and MEP-1; UNC-98 is located in M-lines, muscle cell nuclei, and perhaps dense bodies. WormBase CDS description: Zinc finger
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Reinke et al 2004, list of genes in cluster A,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F19F10.1 F19F10.1 P W All gene names: F19F10.1; 5I41; CE09481; WBGene00017598; WP:CE09481 WormBase description: DNA-binding protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Reinke et al 2004, wt herm vs wt herm enriched gen,                            
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              IVb male soma enriched genes, Wang et al 2003  S3                                  
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Dauer                                
                                              Enriched, Wang et al 2003  S4 genes pass two-wayANOVA                              
                                              P0                                                                                 

F22D6.2 F22D6.2 P W All gene names: F22D6.2; F22D6.2.1; F22D6.2.2; 1H656; CE05683; WBGene00009050; WP:CE05683
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                            
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F38A6.3 F38A6.3 P W All gene names: hif-1; F38A6.3; F38A6.3e.1; F38A6.3e.2; 5V253; CE18671; CE18672; CE32019; CE38181; CE38182; NM_075607; WBGene00001851; WP:CE18671; WP:CE18672; WP:CE32019; WP:CE38181; WP:CE38182 WormBase description: hif-1 encodes an ortholog of the mammalian hypoxia-induced factor HIF-1, and is required for survival in hypoxic environments (1% oxygen) that have no effect on wild-type C. elegans.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF                                                                                 

F56F3.4 F56F3.4 P W All gene names: F56F3.4; 3F561; CE01016; WBGene00010155; WP:CE01016 WormBase description: Ubiquitin family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jiang et al 2001  Fig1 male-enriched TF,                              
                                              Jones et al 2001  Non dauer genes P<0.05, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, Reinke et al 2004, wt vs                                
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, list of genes                              
                                              in cluster D, Reinke et al 2004, shared sperm                                      

F58E6.1 stat-b P W All gene names: STAT-B; F58E6.1; CE20893; CE25921; WBGene00010251; WP:CE20893; WP:CE25921 WormBase description: The F58E6.1 encodes a protein that may be involved in apoptosis.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

SIA-1 sia-1 P W All gene names: SIA-1; WBGene00004794
T01G6.6 T01G6.6 P W All gene names: nhr-212; T01G6.6; 5A963; CE35608; WBGene00020153; WP:CE35608 WormBase description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, ViswanathanM et al 2005  S2 sir-2.1 regulated                                  

T24H10.2 T24H10.2 P W All gene names: T24H10.2; WBGene00012001
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Reinke et al 2004, list of genes in cluster order,                             
                                              Reinke et al 2004, list of genes in cluster B                                      

W03B1.9 W03B1.9 P W All gene names: W03B1.9; 4F116; CE14504; WBGene00020978; WP:CE14504
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1 male-enriched                              
                                              TF, Lund et al 2002  Fig1 aging-regulated genes, Reinke                            
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, Reinke et al 2004, shared                               
                                              sperm                                                                              

W09C2.1 elt-1 P W All gene names: elt-1; W09C2.1; W09C2.1a.1; W09C2.1a.2; 4K383; CE03799; CE39113; NM_069307; WBGene00001249; WP:CE03799; WP:CE39113 WormBase description: The elt-1 gene encodes a GATA transcription factor expressed in the embryonic hypodermis, and is essential for the production of most hypodermal cells. WormBase CDS description: elongation factor ELT
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, validated PAL-1                                 
                                              target genes, Baugh et al 2005, PAL-1 target genes,                                
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, mixed sperm soma, Reinke et al 2004,                            
                                              fem3 enriched genes