Link et al 2003 T2 Abeta induced, 12 genes

Gene list file name:Link2003.T2_Abeta_induced.txt
Type of gene identifier:Cosmid name
Description:Link et al 2003 Table2: Abeta induced  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C09B9.3 C09B9.3 P W All gene names: C09B9.3; 4F786; CE29571; WBGene00015628; WP:CE29571
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              Portman et al 2004  T1 25 candidate ray genes, Reinke                              
                                              et al 2004, herm sperm, Reinke et al 2004, wt vs glp-4                             
                                              enriched genes, Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C49C8.1 C49C8.1 P W All gene names: C49C8.1; 4J421; CE08836; WBGene00016765; WP:CE08836 WormBase description: serine/threonine-protein kinase
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              Reinke et al 2004, spermatogenesis enriched genes,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              males vs glp4 male enriched , Reinke et al 2004, GO                                
                                              categories, Reinke et al 2004, shared sperm                                        

F22E5.6 F22E5.6 P W All gene names: F22E5.6; 2C941; CE35503; WBGene00017705; WP:CE35503
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T3 Abeta highly                                  
                                              induced, Link et al 2003  T2 Abeta induced,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F33A8.1 F33A8.1 P W All gene names: let-858; F33A8.1; F33A8.1.1; F33A8.1.2; 2L317; CE17753; NM_063962; WBGene00002957; WP:CE17753 WormBase description: let-858 encodes nucampholin, a highly conserved protein rich in acidic and basic residues that also shares some similarity to eukaryotic initiation factor eIF-4 gamma; LET-858 is required for early embryogenesis and tissue differentiation and is expressed ubiquitously throughout development; LET-858 localizes to nuclei where it overlaps, but is not restricted to, chromosomal regions; based upon its sequence and localization, LET-858 is likely to be involved in protein synthesis and/or RNA binding.
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, wt vs                             
                                              glp-4 enriched genes, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Roy et al 2002  S3 muscle genes                                 

F37C12.2 F37C12.2 P W All gene names: F37C12.2; 3I275; CE00741; WBGene00018150; WP:CE00741
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F45E4.1 F45E4.1 P W All gene names: arf-1.1; arl-6; F45E4.1; 4I401; CE10492; NM_068841; WBGene00000190; WP:CE10492 WormBase description: arf-1.1 encodes a member of the ADP-ribosylation factor family. WormBase CDS description: ADP-ribosylation factor
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, list of genes in cluster D                                      

T01H10.3 T01H10.3 P W All gene names: T01H10.3; CE36663; WBGene00011356; WP:CE36663; XM735 WormBase description: nicotinic acetylcholine receptor
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              Romagnolo et al 2002  Fig3b signaling, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

T23G5.5 T23G5.5 P W All gene names: dat-1; T23G5.5; 3K335; CE25124; NM_066642; WBGene00000934; WP:CE25124 WormBase description: dat-1 is orthologous to the human gene NOREPINEPHRINE TRANSPORTER (SLC6A2; OMIM:163970), which when mutated leads to disease. WormBase CDS description: sodium:neurotransmitter symporter
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Portman et al 2004 T1 10 previously-known ray gene,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y46H3A.2 Y46H3A.E P W All gene names: hsp-16.41; HSP16-41; Y46H3A.2; Y46H3A.E; 5C283; CE22003; NM_071107; WBGene00002018; WP:CE22003 WormBase description: hsp-16.41 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; an hsp-16.41 reporter fusion, expressed broadly but strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; expression is detectable in somatic tissues in post-gastrulation embryos, all larval stages, and in adults; HSP-16.41 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Link et al 2003  T3 Abeta highly                                    
                                              induced, Link et al 2003  T2 Abeta induced, Reinke et                              
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

Y46H3A.3 Y46H3A.D P W All gene names: hsp-16.2; Y46H3A.3; Y46H3A.D; 5C282; CE22002; NM_071106; WBGene00002016; WP:CE22002 WormBase description: hsp-16.2 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; hsp-16.2 expression, strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; HSP-16.2 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease; HSP-16.2 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, Golden et al 2004, daf-2 differentially                             
                                              expressed , Link et al 2003  T3 Abeta highly induced,                              
                                              Link et al 2003  T2 Abeta induced, Murphy et al 2003                               
                                              Fig2 Class1 elongate lifespan, Romagnolo et al 2002                                
                                              Fig2a heat shock, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated                                                                          

Y50E8A.9 Y50E8A.9 P W All gene names: Y50E8.N; Y50E8A.9; 5P258; CE22316; WBGene00013052; WP:CE22316 WormBase description: Y50E8A.9 encodes a homolog of human scramblase (PLSCR1; OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis; paralogs of Y50E8A.9 include F46A8.9, F46A8.10, K08D10.7, K08D10.8, and Y50E8A.9.
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              Reinke et al 2004, intrinsic, Reinke et al 2004, Fig2b                             
                                              shared gemlines, Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, wt males vs glp4 male                            
                                              enriched , Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen                                                                       

ZC239.12 ZC239.12 P W All gene names: sdz-35; ZC239.12; 2D498; CE15132; WBGene00022570; WP:CE15132
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T3 Abeta highly                                  
                                              induced, Link et al 2003  T2 Abeta induced,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated